Multiple sequence alignment - TraesCS5D01G200000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G200000 chr5D 100.000 2599 0 0 1 2599 302743076 302745674 0.000000e+00 4800
1 TraesCS5D01G200000 chr5A 92.721 1882 74 28 346 2188 395304768 395302911 0.000000e+00 2658
2 TraesCS5D01G200000 chr5A 96.000 350 14 0 1 350 395309675 395309326 1.040000e-158 569
3 TraesCS5D01G200000 chr5B 91.776 1605 55 30 625 2188 347301925 347303493 0.000000e+00 2161
4 TraesCS5D01G200000 chr5B 94.418 627 22 4 1 625 347301132 347301747 0.000000e+00 952
5 TraesCS5D01G200000 chr6A 93.478 414 26 1 2187 2599 203934575 203934988 4.750000e-172 614
6 TraesCS5D01G200000 chr3A 91.905 420 27 2 2182 2599 515741478 515741892 4.820000e-162 580
7 TraesCS5D01G200000 chr3A 87.081 418 47 4 2184 2598 726112243 726112656 1.410000e-127 466
8 TraesCS5D01G200000 chr2A 88.564 411 46 1 2189 2598 13086549 13086139 4.990000e-137 497
9 TraesCS5D01G200000 chr1B 87.711 415 50 1 2185 2598 675319406 675318992 1.400000e-132 483
10 TraesCS5D01G200000 chr7B 87.591 411 50 1 2189 2598 218544487 218544897 2.340000e-130 475
11 TraesCS5D01G200000 chr7B 87.224 407 51 1 2189 2594 503485263 503485669 1.820000e-126 462
12 TraesCS5D01G200000 chr7B 86.893 412 53 1 2188 2598 58596343 58595932 6.550000e-126 460
13 TraesCS5D01G200000 chr3B 87.409 413 51 1 2187 2598 29609065 29609477 8.420000e-130 473
14 TraesCS5D01G200000 chr3B 76.230 244 39 11 1281 1522 821391610 821391384 7.600000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G200000 chr5D 302743076 302745674 2598 False 4800.0 4800 100.000 1 2599 1 chr5D.!!$F1 2598
1 TraesCS5D01G200000 chr5A 395302911 395304768 1857 True 2658.0 2658 92.721 346 2188 1 chr5A.!!$R1 1842
2 TraesCS5D01G200000 chr5B 347301132 347303493 2361 False 1556.5 2161 93.097 1 2188 2 chr5B.!!$F1 2187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 987 0.041238 AGATTCCCACCCTCGTCTCA 59.959 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 2775 0.035915 TATGTGCAAGCTAACCGGCA 60.036 50.0 0.0 0.0 34.17 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.937706 CACCAAAAATCAACACCAAAGCA 59.062 39.130 0.00 0.00 0.00 3.91
120 121 5.989777 ACAAACAACTGTAGTGGTGTAGATC 59.010 40.000 0.00 0.00 31.36 2.75
121 122 6.183360 ACAAACAACTGTAGTGGTGTAGATCT 60.183 38.462 0.00 0.00 31.36 2.75
122 123 6.420913 AACAACTGTAGTGGTGTAGATCTT 57.579 37.500 0.00 0.00 31.36 2.40
123 124 5.784177 ACAACTGTAGTGGTGTAGATCTTG 58.216 41.667 0.00 0.00 29.39 3.02
124 125 4.457834 ACTGTAGTGGTGTAGATCTTGC 57.542 45.455 0.00 0.00 0.00 4.01
125 126 3.832490 ACTGTAGTGGTGTAGATCTTGCA 59.168 43.478 0.00 0.00 0.00 4.08
126 127 4.177026 CTGTAGTGGTGTAGATCTTGCAC 58.823 47.826 16.98 16.98 0.00 4.57
127 128 3.576550 TGTAGTGGTGTAGATCTTGCACA 59.423 43.478 22.94 11.32 35.05 4.57
128 129 3.988976 AGTGGTGTAGATCTTGCACAT 57.011 42.857 22.94 11.45 35.05 3.21
147 148 6.431852 TGCACATAATTGTAGATGATCCATGG 59.568 38.462 4.97 4.97 33.76 3.66
151 152 9.104713 ACATAATTGTAGATGATCCATGGTCTA 57.895 33.333 12.58 8.65 33.16 2.59
158 159 4.522405 AGATGATCCATGGTCTACTTCTCG 59.478 45.833 12.58 0.00 0.00 4.04
161 162 3.868757 TCCATGGTCTACTTCTCGTTG 57.131 47.619 12.58 0.00 0.00 4.10
164 165 2.983402 TGGTCTACTTCTCGTTGTCG 57.017 50.000 0.00 0.00 38.55 4.35
176 177 2.760181 TCGTTGTCGTTGTTTTTGACG 58.240 42.857 0.00 0.00 40.43 4.35
194 195 2.203480 ACCAACCATGCAAGGCGT 60.203 55.556 8.15 0.00 0.00 5.68
207 208 0.106149 AAGGCGTGGAGTCGAAAAGT 59.894 50.000 0.00 0.00 0.00 2.66
232 233 6.596621 AGGAAGAAAAAGAAGTCTAGCAAGT 58.403 36.000 0.00 0.00 0.00 3.16
406 407 2.018515 ACGTAACCCAACCACAAACTG 58.981 47.619 0.00 0.00 0.00 3.16
693 881 1.226974 CGCTGACGTGGATCCGATT 60.227 57.895 7.39 0.00 33.53 3.34
723 911 4.530857 CCATCCGACGGCCCAGAC 62.531 72.222 9.66 0.00 0.00 3.51
734 922 1.501654 GGCCCAGACCCTTTTCCTCT 61.502 60.000 0.00 0.00 0.00 3.69
744 932 7.171653 CAGACCCTTTTCCTCTTCTTTTATCT 58.828 38.462 0.00 0.00 0.00 1.98
798 987 0.041238 AGATTCCCACCCTCGTCTCA 59.959 55.000 0.00 0.00 0.00 3.27
817 1006 4.662961 CCTCTCCACACGCGCACA 62.663 66.667 5.73 0.00 0.00 4.57
818 1007 2.433145 CTCTCCACACGCGCACAT 60.433 61.111 5.73 0.00 0.00 3.21
893 1091 0.240678 TTACGGACTTTGCGAGCGTA 59.759 50.000 0.00 0.00 34.49 4.42
913 1111 1.521681 GTGTGCTAGGGTGGATCGC 60.522 63.158 0.00 0.00 0.00 4.58
964 1167 0.759959 GTTAAGGGAGGAGCTAGGCC 59.240 60.000 0.00 0.00 0.00 5.19
996 1209 0.687920 GGAGCTAGCTGGGGGATAAC 59.312 60.000 24.99 3.61 0.00 1.89
1065 1278 2.112297 GCGGTGGTGTTGGAGGAA 59.888 61.111 0.00 0.00 0.00 3.36
1350 1563 1.037493 ACAAGTACGTGAGCTGTCCA 58.963 50.000 16.00 0.00 0.00 4.02
1382 1602 1.811860 GTGCATCCATGGCCAAGTC 59.188 57.895 10.96 0.00 0.00 3.01
1758 2007 1.067060 TCGCTGGTAATCGATCTGTGG 59.933 52.381 0.00 0.00 0.00 4.17
1895 2144 2.717639 TCCTACGGTACTACTCCACC 57.282 55.000 0.00 0.00 0.00 4.61
1926 2175 6.992123 TCGATTAGTTAATTGCATCACCTCAT 59.008 34.615 0.00 0.00 0.00 2.90
1927 2176 7.171508 TCGATTAGTTAATTGCATCACCTCATC 59.828 37.037 0.00 0.00 0.00 2.92
1928 2177 6.942532 TTAGTTAATTGCATCACCTCATCC 57.057 37.500 0.00 0.00 0.00 3.51
1929 2178 5.121380 AGTTAATTGCATCACCTCATCCT 57.879 39.130 0.00 0.00 0.00 3.24
1930 2179 5.128919 AGTTAATTGCATCACCTCATCCTC 58.871 41.667 0.00 0.00 0.00 3.71
1931 2180 3.657398 AATTGCATCACCTCATCCTCA 57.343 42.857 0.00 0.00 0.00 3.86
1964 2213 1.068895 TGTTTGGCTTTGTGCATCCTG 59.931 47.619 0.00 0.00 45.15 3.86
1972 2221 1.236616 TTGTGCATCCTGGACGCTTG 61.237 55.000 16.42 3.43 41.94 4.01
1974 2223 1.078918 TGCATCCTGGACGCTTGAG 60.079 57.895 16.42 0.00 0.00 3.02
1999 2251 3.957671 CAGTACTGCGTAGACCGAATA 57.042 47.619 10.54 0.00 39.56 1.75
2089 2341 3.384146 TGGTGATGTGTGCAGTCAAAAAT 59.616 39.130 0.00 0.00 0.00 1.82
2147 2400 2.151202 CGCCAGGCTGAAAGTTAAGAA 58.849 47.619 17.94 0.00 35.30 2.52
2188 2441 4.468510 TGGTAACTAATCAATCCCGTGAGT 59.531 41.667 0.00 0.00 37.61 3.41
2189 2442 5.657745 TGGTAACTAATCAATCCCGTGAGTA 59.342 40.000 0.00 0.00 37.61 2.59
2190 2443 6.154877 TGGTAACTAATCAATCCCGTGAGTAA 59.845 38.462 0.00 0.00 28.49 2.24
2191 2444 7.043565 GGTAACTAATCAATCCCGTGAGTAAA 58.956 38.462 0.00 0.00 28.49 2.01
2192 2445 7.713942 GGTAACTAATCAATCCCGTGAGTAAAT 59.286 37.037 0.00 0.00 28.49 1.40
2193 2446 7.787725 AACTAATCAATCCCGTGAGTAAATC 57.212 36.000 0.00 0.00 28.49 2.17
2194 2447 7.125792 ACTAATCAATCCCGTGAGTAAATCT 57.874 36.000 0.00 0.00 28.49 2.40
2195 2448 6.986817 ACTAATCAATCCCGTGAGTAAATCTG 59.013 38.462 0.00 0.00 28.49 2.90
2196 2449 5.614324 ATCAATCCCGTGAGTAAATCTGA 57.386 39.130 0.00 0.00 0.00 3.27
2197 2450 5.011090 TCAATCCCGTGAGTAAATCTGAG 57.989 43.478 0.00 0.00 0.00 3.35
2198 2451 4.709886 TCAATCCCGTGAGTAAATCTGAGA 59.290 41.667 0.00 0.00 0.00 3.27
2199 2452 5.186992 TCAATCCCGTGAGTAAATCTGAGAA 59.813 40.000 0.00 0.00 0.00 2.87
2200 2453 5.878406 ATCCCGTGAGTAAATCTGAGAAT 57.122 39.130 0.00 0.00 0.00 2.40
2201 2454 5.011090 TCCCGTGAGTAAATCTGAGAATG 57.989 43.478 0.00 0.00 0.00 2.67
2202 2455 4.122776 CCCGTGAGTAAATCTGAGAATGG 58.877 47.826 0.00 0.00 0.00 3.16
2203 2456 4.383118 CCCGTGAGTAAATCTGAGAATGGT 60.383 45.833 0.00 0.00 0.00 3.55
2204 2457 5.178797 CCGTGAGTAAATCTGAGAATGGTT 58.821 41.667 0.00 0.00 0.00 3.67
2205 2458 5.643777 CCGTGAGTAAATCTGAGAATGGTTT 59.356 40.000 0.00 0.00 0.00 3.27
2206 2459 6.149474 CCGTGAGTAAATCTGAGAATGGTTTT 59.851 38.462 0.00 0.00 0.00 2.43
2207 2460 7.308589 CCGTGAGTAAATCTGAGAATGGTTTTT 60.309 37.037 0.00 0.00 0.00 1.94
2208 2461 7.535258 CGTGAGTAAATCTGAGAATGGTTTTTG 59.465 37.037 0.00 0.00 0.00 2.44
2209 2462 8.567948 GTGAGTAAATCTGAGAATGGTTTTTGA 58.432 33.333 0.00 0.00 0.00 2.69
2210 2463 9.300681 TGAGTAAATCTGAGAATGGTTTTTGAT 57.699 29.630 0.00 0.00 0.00 2.57
2215 2468 9.710900 AAATCTGAGAATGGTTTTTGATTAACC 57.289 29.630 0.00 0.00 44.28 2.85
2216 2469 6.908825 TCTGAGAATGGTTTTTGATTAACCG 58.091 36.000 0.00 0.00 46.44 4.44
2217 2470 6.019779 TGAGAATGGTTTTTGATTAACCGG 57.980 37.500 0.00 0.00 46.44 5.28
2218 2471 5.047660 TGAGAATGGTTTTTGATTAACCGGG 60.048 40.000 6.32 0.00 46.44 5.73
2219 2472 4.221924 AGAATGGTTTTTGATTAACCGGGG 59.778 41.667 6.32 0.00 46.44 5.73
2220 2473 1.619332 TGGTTTTTGATTAACCGGGGC 59.381 47.619 6.32 0.00 46.44 5.80
2221 2474 1.066716 GGTTTTTGATTAACCGGGGCC 60.067 52.381 6.32 0.00 36.06 5.80
2222 2475 1.619332 GTTTTTGATTAACCGGGGCCA 59.381 47.619 6.32 0.00 0.00 5.36
2223 2476 2.011122 TTTTGATTAACCGGGGCCAA 57.989 45.000 6.32 0.00 0.00 4.52
2224 2477 1.258676 TTTGATTAACCGGGGCCAAC 58.741 50.000 6.32 0.00 0.00 3.77
2225 2478 0.961358 TTGATTAACCGGGGCCAACG 60.961 55.000 6.32 8.85 0.00 4.10
2255 2508 5.622346 TTTTTACCTTGGGCTTGATTTGT 57.378 34.783 0.00 0.00 0.00 2.83
2256 2509 5.622346 TTTTACCTTGGGCTTGATTTGTT 57.378 34.783 0.00 0.00 0.00 2.83
2257 2510 5.622346 TTTACCTTGGGCTTGATTTGTTT 57.378 34.783 0.00 0.00 0.00 2.83
2258 2511 3.473923 ACCTTGGGCTTGATTTGTTTG 57.526 42.857 0.00 0.00 0.00 2.93
2259 2512 2.104622 ACCTTGGGCTTGATTTGTTTGG 59.895 45.455 0.00 0.00 0.00 3.28
2260 2513 2.550639 CCTTGGGCTTGATTTGTTTGGG 60.551 50.000 0.00 0.00 0.00 4.12
2261 2514 1.799933 TGGGCTTGATTTGTTTGGGT 58.200 45.000 0.00 0.00 0.00 4.51
2262 2515 2.122768 TGGGCTTGATTTGTTTGGGTT 58.877 42.857 0.00 0.00 0.00 4.11
2263 2516 2.158842 TGGGCTTGATTTGTTTGGGTTG 60.159 45.455 0.00 0.00 0.00 3.77
2264 2517 2.158827 GGGCTTGATTTGTTTGGGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
2265 2518 2.871633 GGCTTGATTTGTTTGGGTTGTG 59.128 45.455 0.00 0.00 0.00 3.33
2266 2519 3.431486 GGCTTGATTTGTTTGGGTTGTGA 60.431 43.478 0.00 0.00 0.00 3.58
2267 2520 4.379652 GCTTGATTTGTTTGGGTTGTGAT 58.620 39.130 0.00 0.00 0.00 3.06
2268 2521 4.211794 GCTTGATTTGTTTGGGTTGTGATG 59.788 41.667 0.00 0.00 0.00 3.07
2269 2522 4.333913 TGATTTGTTTGGGTTGTGATGG 57.666 40.909 0.00 0.00 0.00 3.51
2270 2523 3.070734 TGATTTGTTTGGGTTGTGATGGG 59.929 43.478 0.00 0.00 0.00 4.00
2271 2524 0.755686 TTGTTTGGGTTGTGATGGGC 59.244 50.000 0.00 0.00 0.00 5.36
2272 2525 1.118356 TGTTTGGGTTGTGATGGGCC 61.118 55.000 0.00 0.00 0.00 5.80
2273 2526 1.535202 TTTGGGTTGTGATGGGCCC 60.535 57.895 17.59 17.59 41.42 5.80
2275 2528 2.362889 GGGTTGTGATGGGCCCAG 60.363 66.667 31.97 0.00 40.76 4.45
2276 2529 2.763215 GGTTGTGATGGGCCCAGA 59.237 61.111 31.97 16.96 0.00 3.86
2277 2530 1.678970 GGTTGTGATGGGCCCAGAC 60.679 63.158 31.97 27.45 0.00 3.51
2278 2531 1.380302 GTTGTGATGGGCCCAGACT 59.620 57.895 31.97 14.51 0.00 3.24
2279 2532 0.962356 GTTGTGATGGGCCCAGACTG 60.962 60.000 31.97 0.00 0.00 3.51
2280 2533 1.426251 TTGTGATGGGCCCAGACTGT 61.426 55.000 31.97 13.59 0.00 3.55
2281 2534 1.380302 GTGATGGGCCCAGACTGTT 59.620 57.895 31.97 12.68 0.00 3.16
2282 2535 0.618458 GTGATGGGCCCAGACTGTTA 59.382 55.000 31.97 6.67 0.00 2.41
2283 2536 1.212935 GTGATGGGCCCAGACTGTTAT 59.787 52.381 31.97 10.87 0.00 1.89
2284 2537 1.490490 TGATGGGCCCAGACTGTTATC 59.510 52.381 31.97 20.15 0.00 1.75
2285 2538 1.490490 GATGGGCCCAGACTGTTATCA 59.510 52.381 31.97 0.50 0.00 2.15
2286 2539 0.911769 TGGGCCCAGACTGTTATCAG 59.088 55.000 24.45 0.00 46.18 2.90
2302 2555 7.648039 TGTTATCAGTTTAGTTTGGTTTGGT 57.352 32.000 0.00 0.00 0.00 3.67
2303 2556 8.068892 TGTTATCAGTTTAGTTTGGTTTGGTT 57.931 30.769 0.00 0.00 0.00 3.67
2304 2557 8.532819 TGTTATCAGTTTAGTTTGGTTTGGTTT 58.467 29.630 0.00 0.00 0.00 3.27
2305 2558 9.373603 GTTATCAGTTTAGTTTGGTTTGGTTTT 57.626 29.630 0.00 0.00 0.00 2.43
2306 2559 7.841915 ATCAGTTTAGTTTGGTTTGGTTTTG 57.158 32.000 0.00 0.00 0.00 2.44
2307 2560 5.639931 TCAGTTTAGTTTGGTTTGGTTTTGC 59.360 36.000 0.00 0.00 0.00 3.68
2308 2561 4.627900 AGTTTAGTTTGGTTTGGTTTTGCG 59.372 37.500 0.00 0.00 0.00 4.85
2309 2562 2.753055 AGTTTGGTTTGGTTTTGCGT 57.247 40.000 0.00 0.00 0.00 5.24
2310 2563 3.870633 AGTTTGGTTTGGTTTTGCGTA 57.129 38.095 0.00 0.00 0.00 4.42
2311 2564 4.189639 AGTTTGGTTTGGTTTTGCGTAA 57.810 36.364 0.00 0.00 0.00 3.18
2312 2565 4.566987 AGTTTGGTTTGGTTTTGCGTAAA 58.433 34.783 0.00 0.00 0.00 2.01
2313 2566 4.995487 AGTTTGGTTTGGTTTTGCGTAAAA 59.005 33.333 7.36 7.36 33.57 1.52
2314 2567 5.469084 AGTTTGGTTTGGTTTTGCGTAAAAA 59.531 32.000 13.12 3.65 37.51 1.94
2315 2568 6.149640 AGTTTGGTTTGGTTTTGCGTAAAAAT 59.850 30.769 13.12 0.00 39.86 1.82
2316 2569 7.333672 AGTTTGGTTTGGTTTTGCGTAAAAATA 59.666 29.630 13.12 2.81 39.86 1.40
2317 2570 7.605410 TTGGTTTGGTTTTGCGTAAAAATAA 57.395 28.000 13.12 8.56 39.86 1.40
2318 2571 7.235430 TGGTTTGGTTTTGCGTAAAAATAAG 57.765 32.000 13.12 0.00 39.86 1.73
2319 2572 6.817140 TGGTTTGGTTTTGCGTAAAAATAAGT 59.183 30.769 13.12 0.00 39.86 2.24
2320 2573 7.333672 TGGTTTGGTTTTGCGTAAAAATAAGTT 59.666 29.630 13.12 0.00 39.86 2.66
2321 2574 7.636745 GGTTTGGTTTTGCGTAAAAATAAGTTG 59.363 33.333 13.12 0.00 39.86 3.16
2322 2575 6.830114 TGGTTTTGCGTAAAAATAAGTTGG 57.170 33.333 13.12 0.00 39.86 3.77
2323 2576 5.753921 TGGTTTTGCGTAAAAATAAGTTGGG 59.246 36.000 13.12 0.00 39.86 4.12
2324 2577 5.754406 GGTTTTGCGTAAAAATAAGTTGGGT 59.246 36.000 13.12 0.00 39.86 4.51
2325 2578 6.922407 GGTTTTGCGTAAAAATAAGTTGGGTA 59.078 34.615 13.12 0.00 39.86 3.69
2326 2579 7.599621 GGTTTTGCGTAAAAATAAGTTGGGTAT 59.400 33.333 13.12 0.00 39.86 2.73
2327 2580 8.429299 GTTTTGCGTAAAAATAAGTTGGGTATG 58.571 33.333 13.12 0.00 39.86 2.39
2328 2581 6.197364 TGCGTAAAAATAAGTTGGGTATGG 57.803 37.500 0.00 0.00 0.00 2.74
2329 2582 5.711036 TGCGTAAAAATAAGTTGGGTATGGT 59.289 36.000 0.00 0.00 0.00 3.55
2330 2583 6.208994 TGCGTAAAAATAAGTTGGGTATGGTT 59.791 34.615 0.00 0.00 0.00 3.67
2331 2584 6.528774 GCGTAAAAATAAGTTGGGTATGGTTG 59.471 38.462 0.00 0.00 0.00 3.77
2332 2585 7.030768 CGTAAAAATAAGTTGGGTATGGTTGG 58.969 38.462 0.00 0.00 0.00 3.77
2333 2586 6.367374 AAAAATAAGTTGGGTATGGTTGGG 57.633 37.500 0.00 0.00 0.00 4.12
2334 2587 4.685513 AATAAGTTGGGTATGGTTGGGT 57.314 40.909 0.00 0.00 0.00 4.51
2335 2588 4.685513 ATAAGTTGGGTATGGTTGGGTT 57.314 40.909 0.00 0.00 0.00 4.11
2336 2589 3.338110 AAGTTGGGTATGGTTGGGTTT 57.662 42.857 0.00 0.00 0.00 3.27
2337 2590 2.604139 AGTTGGGTATGGTTGGGTTTG 58.396 47.619 0.00 0.00 0.00 2.93
2338 2591 1.621317 GTTGGGTATGGTTGGGTTTGG 59.379 52.381 0.00 0.00 0.00 3.28
2339 2592 0.115349 TGGGTATGGTTGGGTTTGGG 59.885 55.000 0.00 0.00 0.00 4.12
2340 2593 1.261938 GGGTATGGTTGGGTTTGGGC 61.262 60.000 0.00 0.00 0.00 5.36
2341 2594 1.261938 GGTATGGTTGGGTTTGGGCC 61.262 60.000 0.00 0.00 0.00 5.80
2342 2595 0.252057 GTATGGTTGGGTTTGGGCCT 60.252 55.000 4.53 0.00 0.00 5.19
2343 2596 1.006162 GTATGGTTGGGTTTGGGCCTA 59.994 52.381 4.53 0.00 0.00 3.93
2344 2597 0.489567 ATGGTTGGGTTTGGGCCTAA 59.510 50.000 4.53 0.00 0.00 2.69
2345 2598 0.264955 TGGTTGGGTTTGGGCCTAAA 59.735 50.000 10.69 10.69 30.76 1.85
2346 2599 1.132689 TGGTTGGGTTTGGGCCTAAAT 60.133 47.619 18.08 0.00 30.76 1.40
2347 2600 1.277842 GGTTGGGTTTGGGCCTAAATG 59.722 52.381 18.08 0.00 30.76 2.32
2348 2601 1.277842 GTTGGGTTTGGGCCTAAATGG 59.722 52.381 18.08 0.00 39.35 3.16
2349 2602 0.489567 TGGGTTTGGGCCTAAATGGT 59.510 50.000 18.08 0.00 38.35 3.55
2350 2603 1.132689 TGGGTTTGGGCCTAAATGGTT 60.133 47.619 18.08 0.00 38.35 3.67
2351 2604 1.982226 GGGTTTGGGCCTAAATGGTTT 59.018 47.619 18.08 0.00 38.35 3.27
2352 2605 2.027561 GGGTTTGGGCCTAAATGGTTTC 60.028 50.000 18.08 3.35 38.35 2.78
2353 2606 2.353307 GGTTTGGGCCTAAATGGTTTCG 60.353 50.000 18.08 0.00 38.35 3.46
2354 2607 1.551452 TTGGGCCTAAATGGTTTCGG 58.449 50.000 4.53 0.00 38.35 4.30
2357 2610 2.177044 GCCTAAATGGTTTCGGCGT 58.823 52.632 6.85 0.00 40.92 5.68
2358 2611 0.524414 GCCTAAATGGTTTCGGCGTT 59.476 50.000 6.85 0.00 40.92 4.84
2359 2612 1.731098 GCCTAAATGGTTTCGGCGTTG 60.731 52.381 6.85 0.00 40.92 4.10
2360 2613 1.807742 CCTAAATGGTTTCGGCGTTGA 59.192 47.619 6.85 0.00 0.00 3.18
2361 2614 2.413634 CCTAAATGGTTTCGGCGTTGAC 60.414 50.000 6.85 4.12 0.00 3.18
2362 2615 1.025812 AAATGGTTTCGGCGTTGACA 58.974 45.000 6.85 3.03 0.00 3.58
2363 2616 0.591170 AATGGTTTCGGCGTTGACAG 59.409 50.000 6.85 0.00 0.00 3.51
2364 2617 0.534203 ATGGTTTCGGCGTTGACAGT 60.534 50.000 6.85 0.00 0.00 3.55
2365 2618 0.745128 TGGTTTCGGCGTTGACAGTT 60.745 50.000 6.85 0.00 0.00 3.16
2366 2619 0.316689 GGTTTCGGCGTTGACAGTTG 60.317 55.000 6.85 0.00 0.00 3.16
2367 2620 0.375803 GTTTCGGCGTTGACAGTTGT 59.624 50.000 6.85 0.00 0.00 3.32
2368 2621 0.375454 TTTCGGCGTTGACAGTTGTG 59.625 50.000 6.85 0.00 0.00 3.33
2369 2622 0.460459 TTCGGCGTTGACAGTTGTGA 60.460 50.000 6.85 0.00 0.00 3.58
2370 2623 0.460459 TCGGCGTTGACAGTTGTGAA 60.460 50.000 6.85 0.00 0.00 3.18
2371 2624 0.586319 CGGCGTTGACAGTTGTGAAT 59.414 50.000 0.00 0.00 0.00 2.57
2372 2625 1.398451 CGGCGTTGACAGTTGTGAATC 60.398 52.381 0.00 0.00 0.00 2.52
2373 2626 1.398451 GGCGTTGACAGTTGTGAATCG 60.398 52.381 0.00 0.00 0.00 3.34
2374 2627 1.260561 GCGTTGACAGTTGTGAATCGT 59.739 47.619 0.00 0.00 0.00 3.73
2375 2628 2.891391 CGTTGACAGTTGTGAATCGTG 58.109 47.619 0.00 0.00 0.00 4.35
2376 2629 2.348498 CGTTGACAGTTGTGAATCGTGG 60.348 50.000 0.00 0.00 0.00 4.94
2377 2630 2.612212 GTTGACAGTTGTGAATCGTGGT 59.388 45.455 0.00 0.00 0.00 4.16
2378 2631 2.912771 TGACAGTTGTGAATCGTGGTT 58.087 42.857 0.00 0.00 0.00 3.67
2379 2632 2.869801 TGACAGTTGTGAATCGTGGTTC 59.130 45.455 0.00 0.00 0.00 3.62
2380 2633 2.869801 GACAGTTGTGAATCGTGGTTCA 59.130 45.455 0.00 0.00 35.84 3.18
2381 2634 2.872245 ACAGTTGTGAATCGTGGTTCAG 59.128 45.455 0.00 0.00 38.68 3.02
2382 2635 3.130633 CAGTTGTGAATCGTGGTTCAGA 58.869 45.455 0.00 0.00 38.68 3.27
2383 2636 3.559655 CAGTTGTGAATCGTGGTTCAGAA 59.440 43.478 1.68 1.68 38.54 3.02
2396 2649 4.478843 GGTTCAGAACCGGTTCTTAAAC 57.521 45.455 36.90 36.90 46.95 2.01
2397 2650 4.132336 GGTTCAGAACCGGTTCTTAAACT 58.868 43.478 39.21 25.54 46.95 2.66
2398 2651 5.299949 GGTTCAGAACCGGTTCTTAAACTA 58.700 41.667 39.21 24.20 46.95 2.24
2399 2652 5.407691 GGTTCAGAACCGGTTCTTAAACTAG 59.592 44.000 39.21 30.59 46.95 2.57
2400 2653 6.218746 GTTCAGAACCGGTTCTTAAACTAGA 58.781 40.000 37.03 30.26 46.95 2.43
2401 2654 5.776744 TCAGAACCGGTTCTTAAACTAGAC 58.223 41.667 40.70 15.71 46.95 2.59
2402 2655 4.620184 CAGAACCGGTTCTTAAACTAGACG 59.380 45.833 40.70 24.08 46.95 4.18
2403 2656 4.279420 AGAACCGGTTCTTAAACTAGACGT 59.721 41.667 38.38 16.36 46.95 4.34
2404 2657 5.473504 AGAACCGGTTCTTAAACTAGACGTA 59.526 40.000 38.38 0.00 46.95 3.57
2405 2658 5.048153 ACCGGTTCTTAAACTAGACGTAC 57.952 43.478 0.00 0.00 35.61 3.67
2406 2659 4.082733 ACCGGTTCTTAAACTAGACGTACC 60.083 45.833 0.00 0.00 35.61 3.34
2407 2660 4.415735 CGGTTCTTAAACTAGACGTACCC 58.584 47.826 0.00 0.00 35.61 3.69
2408 2661 4.082787 CGGTTCTTAAACTAGACGTACCCA 60.083 45.833 0.00 0.00 35.61 4.51
2409 2662 5.164233 GGTTCTTAAACTAGACGTACCCAC 58.836 45.833 0.00 0.00 35.61 4.61
2410 2663 5.278957 GGTTCTTAAACTAGACGTACCCACA 60.279 44.000 0.00 0.00 35.61 4.17
2411 2664 5.376854 TCTTAAACTAGACGTACCCACAC 57.623 43.478 0.00 0.00 0.00 3.82
2412 2665 7.538594 GTTCTTAAACTAGACGTACCCACACG 61.539 46.154 0.00 0.00 38.84 4.49
2413 2666 1.896220 AACTAGACGTACCCACACGA 58.104 50.000 0.00 0.00 44.69 4.35
2414 2667 1.160137 ACTAGACGTACCCACACGAC 58.840 55.000 0.00 0.00 44.69 4.34
2415 2668 1.159285 CTAGACGTACCCACACGACA 58.841 55.000 2.26 0.00 44.69 4.35
2416 2669 0.874390 TAGACGTACCCACACGACAC 59.126 55.000 2.26 0.00 44.69 3.67
2417 2670 1.727022 GACGTACCCACACGACACG 60.727 63.158 2.26 0.00 44.69 4.49
2418 2671 3.101428 CGTACCCACACGACACGC 61.101 66.667 0.00 0.00 44.69 5.34
2419 2672 2.735857 GTACCCACACGACACGCC 60.736 66.667 0.00 0.00 0.00 5.68
2420 2673 4.345962 TACCCACACGACACGCCG 62.346 66.667 0.00 0.00 0.00 6.46
2437 2690 4.664677 GCGGCTGGACAGACACGT 62.665 66.667 5.93 0.00 35.77 4.49
2438 2691 2.959372 CGGCTGGACAGACACGTA 59.041 61.111 5.93 0.00 35.77 3.57
2439 2692 1.443872 CGGCTGGACAGACACGTAC 60.444 63.158 5.93 0.00 35.77 3.67
2440 2693 1.663739 GGCTGGACAGACACGTACA 59.336 57.895 3.00 0.00 36.17 2.90
2441 2694 0.246635 GGCTGGACAGACACGTACAT 59.753 55.000 3.00 0.00 36.17 2.29
2442 2695 1.475280 GGCTGGACAGACACGTACATA 59.525 52.381 3.00 0.00 36.17 2.29
2443 2696 2.527100 GCTGGACAGACACGTACATAC 58.473 52.381 3.00 0.00 0.00 2.39
2473 2726 4.612412 GGTTCGGCGGGACACACA 62.612 66.667 7.21 0.00 0.00 3.72
2474 2727 2.358247 GTTCGGCGGGACACACAT 60.358 61.111 7.21 0.00 0.00 3.21
2475 2728 2.358125 TTCGGCGGGACACACATG 60.358 61.111 7.21 0.00 0.00 3.21
2476 2729 3.171828 TTCGGCGGGACACACATGT 62.172 57.895 7.21 0.00 43.71 3.21
2477 2730 1.817911 TTCGGCGGGACACACATGTA 61.818 55.000 7.21 0.00 39.95 2.29
2478 2731 1.153449 CGGCGGGACACACATGTAT 60.153 57.895 0.00 0.00 39.95 2.29
2479 2732 0.742990 CGGCGGGACACACATGTATT 60.743 55.000 0.00 0.00 39.95 1.89
2480 2733 1.459450 GGCGGGACACACATGTATTT 58.541 50.000 0.00 0.00 39.95 1.40
2481 2734 2.634600 GGCGGGACACACATGTATTTA 58.365 47.619 0.00 0.00 39.95 1.40
2482 2735 2.612212 GGCGGGACACACATGTATTTAG 59.388 50.000 0.00 0.00 39.95 1.85
2483 2736 2.031683 GCGGGACACACATGTATTTAGC 59.968 50.000 0.00 0.00 39.95 3.09
2484 2737 3.531538 CGGGACACACATGTATTTAGCT 58.468 45.455 0.00 0.00 39.95 3.32
2485 2738 3.309682 CGGGACACACATGTATTTAGCTG 59.690 47.826 0.00 0.00 39.95 4.24
2486 2739 3.065371 GGGACACACATGTATTTAGCTGC 59.935 47.826 0.00 0.00 39.95 5.25
2487 2740 3.941483 GGACACACATGTATTTAGCTGCT 59.059 43.478 7.57 7.57 39.95 4.24
2488 2741 5.116180 GGACACACATGTATTTAGCTGCTA 58.884 41.667 5.02 5.02 39.95 3.49
2489 2742 5.006746 GGACACACATGTATTTAGCTGCTAC 59.993 44.000 9.27 0.66 39.95 3.58
2490 2743 5.734720 ACACACATGTATTTAGCTGCTACT 58.265 37.500 9.27 2.58 37.26 2.57
2491 2744 5.582269 ACACACATGTATTTAGCTGCTACTG 59.418 40.000 9.27 4.01 37.26 2.74
2492 2745 5.582269 CACACATGTATTTAGCTGCTACTGT 59.418 40.000 9.27 4.58 0.00 3.55
2493 2746 6.756542 CACACATGTATTTAGCTGCTACTGTA 59.243 38.462 9.27 0.12 0.00 2.74
2494 2747 6.757010 ACACATGTATTTAGCTGCTACTGTAC 59.243 38.462 9.27 12.29 0.00 2.90
2495 2748 6.756542 CACATGTATTTAGCTGCTACTGTACA 59.243 38.462 20.64 20.64 0.00 2.90
2496 2749 7.439356 CACATGTATTTAGCTGCTACTGTACAT 59.561 37.037 22.25 22.25 33.25 2.29
2497 2750 7.653713 ACATGTATTTAGCTGCTACTGTACATC 59.346 37.037 23.72 8.64 31.31 3.06
2498 2751 7.107639 TGTATTTAGCTGCTACTGTACATCA 57.892 36.000 9.27 0.00 0.00 3.07
2499 2752 7.552459 TGTATTTAGCTGCTACTGTACATCAA 58.448 34.615 9.27 0.00 0.00 2.57
2500 2753 8.204160 TGTATTTAGCTGCTACTGTACATCAAT 58.796 33.333 9.27 5.86 0.00 2.57
2501 2754 9.046296 GTATTTAGCTGCTACTGTACATCAATT 57.954 33.333 9.27 0.00 0.00 2.32
2503 2756 8.420374 TTTAGCTGCTACTGTACATCAATTAC 57.580 34.615 9.27 0.00 0.00 1.89
2504 2757 5.043903 AGCTGCTACTGTACATCAATTACG 58.956 41.667 0.00 0.00 0.00 3.18
2505 2758 4.804139 GCTGCTACTGTACATCAATTACGT 59.196 41.667 0.00 0.00 0.00 3.57
2506 2759 5.291128 GCTGCTACTGTACATCAATTACGTT 59.709 40.000 0.00 0.00 0.00 3.99
2507 2760 6.641176 TGCTACTGTACATCAATTACGTTG 57.359 37.500 0.00 0.00 39.25 4.10
2508 2761 5.062934 TGCTACTGTACATCAATTACGTTGC 59.937 40.000 0.00 1.69 37.74 4.17
2509 2762 5.291128 GCTACTGTACATCAATTACGTTGCT 59.709 40.000 0.00 0.00 37.74 3.91
2510 2763 6.474427 GCTACTGTACATCAATTACGTTGCTA 59.526 38.462 0.00 0.00 37.74 3.49
2511 2764 6.887376 ACTGTACATCAATTACGTTGCTAG 57.113 37.500 0.00 0.00 37.74 3.42
2512 2765 5.291128 ACTGTACATCAATTACGTTGCTAGC 59.709 40.000 8.10 8.10 37.74 3.42
2513 2766 5.416083 TGTACATCAATTACGTTGCTAGCT 58.584 37.500 17.23 0.00 37.74 3.32
2514 2767 6.566141 TGTACATCAATTACGTTGCTAGCTA 58.434 36.000 17.23 5.31 37.74 3.32
2515 2768 6.695713 TGTACATCAATTACGTTGCTAGCTAG 59.304 38.462 16.84 16.84 37.74 3.42
2526 2779 2.305405 CTAGCTAGCTTGCTTGCCG 58.695 57.895 27.19 10.35 43.74 5.69
2527 2780 1.153369 TAGCTAGCTTGCTTGCCGG 60.153 57.895 27.19 0.00 43.74 6.13
2528 2781 1.899437 TAGCTAGCTTGCTTGCCGGT 61.899 55.000 27.19 4.54 43.74 5.28
2529 2782 2.335712 GCTAGCTTGCTTGCCGGTT 61.336 57.895 13.17 0.00 0.00 4.44
2530 2783 1.024579 GCTAGCTTGCTTGCCGGTTA 61.025 55.000 13.17 0.00 0.00 2.85
2531 2784 1.009829 CTAGCTTGCTTGCCGGTTAG 58.990 55.000 1.90 1.40 0.00 2.34
2532 2785 1.024579 TAGCTTGCTTGCCGGTTAGC 61.025 55.000 19.23 19.23 37.89 3.09
2533 2786 2.335712 GCTTGCTTGCCGGTTAGCT 61.336 57.895 24.07 0.00 38.22 3.32
2534 2787 1.866853 GCTTGCTTGCCGGTTAGCTT 61.867 55.000 24.07 0.00 38.22 3.74
2535 2788 0.109597 CTTGCTTGCCGGTTAGCTTG 60.110 55.000 24.07 15.50 38.22 4.01
2536 2789 2.141122 TTGCTTGCCGGTTAGCTTGC 62.141 55.000 24.07 11.48 38.22 4.01
2537 2790 2.625823 GCTTGCCGGTTAGCTTGCA 61.626 57.895 18.90 0.00 34.57 4.08
2538 2791 1.210155 CTTGCCGGTTAGCTTGCAC 59.790 57.895 1.90 0.00 32.63 4.57
2539 2792 1.514678 CTTGCCGGTTAGCTTGCACA 61.515 55.000 1.90 0.00 32.63 4.57
2540 2793 0.893270 TTGCCGGTTAGCTTGCACAT 60.893 50.000 1.90 0.00 32.63 3.21
2541 2794 0.035915 TGCCGGTTAGCTTGCACATA 60.036 50.000 1.90 0.00 0.00 2.29
2542 2795 0.377203 GCCGGTTAGCTTGCACATAC 59.623 55.000 1.90 0.00 0.00 2.39
2543 2796 1.732941 CCGGTTAGCTTGCACATACA 58.267 50.000 0.00 0.00 0.00 2.29
2544 2797 1.665679 CCGGTTAGCTTGCACATACAG 59.334 52.381 0.00 0.00 0.00 2.74
2545 2798 1.062587 CGGTTAGCTTGCACATACAGC 59.937 52.381 0.00 0.00 0.00 4.40
2546 2799 2.083774 GGTTAGCTTGCACATACAGCA 58.916 47.619 9.84 0.00 40.85 4.41
2547 2800 2.096496 GGTTAGCTTGCACATACAGCAG 59.904 50.000 9.84 0.00 43.75 4.24
2548 2801 3.002791 GTTAGCTTGCACATACAGCAGA 58.997 45.455 9.84 0.00 43.75 4.26
2549 2802 2.414994 AGCTTGCACATACAGCAGAT 57.585 45.000 9.84 0.00 43.75 2.90
2550 2803 2.719739 AGCTTGCACATACAGCAGATT 58.280 42.857 9.84 0.00 43.75 2.40
2551 2804 2.422479 AGCTTGCACATACAGCAGATTG 59.578 45.455 9.84 0.00 43.75 2.67
2552 2805 2.421073 GCTTGCACATACAGCAGATTGA 59.579 45.455 2.44 0.00 43.75 2.57
2553 2806 3.119743 GCTTGCACATACAGCAGATTGAA 60.120 43.478 2.44 0.00 43.75 2.69
2554 2807 4.439700 GCTTGCACATACAGCAGATTGAAT 60.440 41.667 2.44 0.00 43.75 2.57
2555 2808 5.647589 CTTGCACATACAGCAGATTGAATT 58.352 37.500 0.00 0.00 43.75 2.17
2556 2809 4.989044 TGCACATACAGCAGATTGAATTG 58.011 39.130 0.00 0.00 37.02 2.32
2557 2810 4.142337 TGCACATACAGCAGATTGAATTGG 60.142 41.667 0.00 0.00 37.02 3.16
2558 2811 4.142315 GCACATACAGCAGATTGAATTGGT 60.142 41.667 0.00 0.00 0.00 3.67
2559 2812 5.622914 GCACATACAGCAGATTGAATTGGTT 60.623 40.000 0.00 0.00 0.00 3.67
2560 2813 6.392354 CACATACAGCAGATTGAATTGGTTT 58.608 36.000 0.00 0.00 0.00 3.27
2561 2814 6.529125 CACATACAGCAGATTGAATTGGTTTC 59.471 38.462 0.00 0.00 34.72 2.78
2562 2815 6.209192 ACATACAGCAGATTGAATTGGTTTCA 59.791 34.615 0.00 0.00 42.62 2.69
2572 2825 5.810095 TTGAATTGGTTTCAACCCAAAACT 58.190 33.333 6.25 0.00 46.80 2.66
2573 2826 6.947464 TTGAATTGGTTTCAACCCAAAACTA 58.053 32.000 6.25 0.00 46.80 2.24
2574 2827 7.394816 TTGAATTGGTTTCAACCCAAAACTAA 58.605 30.769 6.25 1.01 46.80 2.24
2575 2828 7.550906 TTGAATTGGTTTCAACCCAAAACTAAG 59.449 33.333 6.25 0.00 46.80 2.18
2579 2832 5.353938 GGTTTCAACCCAAAACTAAGAACC 58.646 41.667 0.00 0.00 43.43 3.62
2580 2833 5.105269 GGTTTCAACCCAAAACTAAGAACCA 60.105 40.000 0.00 0.00 43.43 3.67
2581 2834 5.845391 TTCAACCCAAAACTAAGAACCAG 57.155 39.130 0.00 0.00 0.00 4.00
2582 2835 4.211920 TCAACCCAAAACTAAGAACCAGG 58.788 43.478 0.00 0.00 0.00 4.45
2583 2836 3.958147 CAACCCAAAACTAAGAACCAGGT 59.042 43.478 0.00 0.00 0.00 4.00
2584 2837 4.259933 ACCCAAAACTAAGAACCAGGTT 57.740 40.909 3.79 3.79 0.00 3.50
2585 2838 5.391577 ACCCAAAACTAAGAACCAGGTTA 57.608 39.130 4.25 0.00 0.00 2.85
2586 2839 5.768752 ACCCAAAACTAAGAACCAGGTTAA 58.231 37.500 4.25 0.00 0.00 2.01
2587 2840 5.831525 ACCCAAAACTAAGAACCAGGTTAAG 59.168 40.000 4.25 6.07 0.00 1.85
2588 2841 5.278808 CCCAAAACTAAGAACCAGGTTAAGC 60.279 44.000 4.25 0.00 0.00 3.09
2589 2842 5.278808 CCAAAACTAAGAACCAGGTTAAGCC 60.279 44.000 4.25 0.00 37.58 4.35
2590 2843 3.715638 ACTAAGAACCAGGTTAAGCCC 57.284 47.619 4.25 0.00 38.26 5.19
2591 2844 2.983898 ACTAAGAACCAGGTTAAGCCCA 59.016 45.455 4.25 0.00 38.26 5.36
2592 2845 3.591977 ACTAAGAACCAGGTTAAGCCCAT 59.408 43.478 4.25 0.00 38.26 4.00
2593 2846 4.786454 ACTAAGAACCAGGTTAAGCCCATA 59.214 41.667 4.25 0.00 38.26 2.74
2594 2847 4.881157 AAGAACCAGGTTAAGCCCATAT 57.119 40.909 4.25 0.00 38.26 1.78
2595 2848 5.987019 AAGAACCAGGTTAAGCCCATATA 57.013 39.130 4.25 0.00 38.26 0.86
2596 2849 6.530601 AAGAACCAGGTTAAGCCCATATAT 57.469 37.500 4.25 0.00 38.26 0.86
2597 2850 6.128138 AGAACCAGGTTAAGCCCATATATC 57.872 41.667 4.25 0.00 38.26 1.63
2598 2851 4.929146 ACCAGGTTAAGCCCATATATCC 57.071 45.455 0.00 0.00 38.26 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.107831 TTGGTGTAGGTGTCACTGCC 59.892 55.000 2.35 0.00 36.25 4.85
29 30 4.282496 TGGTGTTGATTTTTGGTGTAGGT 58.718 39.130 0.00 0.00 0.00 3.08
56 57 7.175641 CAGAGGTGGTATCTTTTCATCAAACTT 59.824 37.037 0.00 0.00 0.00 2.66
92 93 5.736813 ACACCACTACAGTTGTTTGTCTTA 58.263 37.500 0.00 0.00 32.56 2.10
93 94 4.585879 ACACCACTACAGTTGTTTGTCTT 58.414 39.130 0.00 0.00 32.56 3.01
106 107 4.188247 TGTGCAAGATCTACACCACTAC 57.812 45.455 20.39 4.01 33.30 2.73
120 121 7.500720 TGGATCATCTACAATTATGTGCAAG 57.499 36.000 0.00 0.00 40.84 4.01
121 122 7.040271 CCATGGATCATCTACAATTATGTGCAA 60.040 37.037 5.56 0.00 40.84 4.08
122 123 6.431852 CCATGGATCATCTACAATTATGTGCA 59.568 38.462 5.56 0.00 40.84 4.57
123 124 6.432162 ACCATGGATCATCTACAATTATGTGC 59.568 38.462 21.47 0.00 40.84 4.57
124 125 7.881751 AGACCATGGATCATCTACAATTATGTG 59.118 37.037 21.47 0.00 40.84 3.21
125 126 7.982252 AGACCATGGATCATCTACAATTATGT 58.018 34.615 21.47 0.00 43.74 2.29
126 127 9.376075 GTAGACCATGGATCATCTACAATTATG 57.624 37.037 24.91 0.00 42.02 1.90
127 128 9.331466 AGTAGACCATGGATCATCTACAATTAT 57.669 33.333 28.59 14.09 43.94 1.28
128 129 8.727100 AGTAGACCATGGATCATCTACAATTA 57.273 34.615 28.59 4.22 43.94 1.40
147 148 3.625938 ACAACGACAACGAGAAGTAGAC 58.374 45.455 0.00 0.00 42.66 2.59
151 152 4.152759 TCAAAAACAACGACAACGAGAAGT 59.847 37.500 0.00 0.00 42.66 3.01
164 165 3.219052 TGGTTGGTCGTCAAAAACAAC 57.781 42.857 0.00 0.00 40.35 3.32
176 177 2.268076 ACGCCTTGCATGGTTGGTC 61.268 57.895 19.05 2.24 0.00 4.02
194 195 5.540400 TTTCTTCCTACTTTTCGACTCCA 57.460 39.130 0.00 0.00 0.00 3.86
207 208 7.736893 ACTTGCTAGACTTCTTTTTCTTCCTA 58.263 34.615 1.04 0.00 0.00 2.94
237 238 6.535274 TGCTGTCATCAAATTCATCTATCG 57.465 37.500 0.00 0.00 0.00 2.92
363 364 7.881751 ACGTAGCAACTGTAGACCTCATATATA 59.118 37.037 0.00 0.00 0.00 0.86
406 407 6.361334 GCTCGATGCATGAGATGAAAGCTC 62.361 50.000 22.46 0.00 45.74 4.09
723 911 6.378564 GGGAAGATAAAAGAAGAGGAAAAGGG 59.621 42.308 0.00 0.00 0.00 3.95
798 987 3.381983 TGCGCGTGTGGAGAGGAT 61.382 61.111 8.43 0.00 0.00 3.24
817 1006 1.523711 CGGCCATGGAAGTGCGTAT 60.524 57.895 18.40 0.00 0.00 3.06
818 1007 2.125310 CGGCCATGGAAGTGCGTA 60.125 61.111 18.40 0.00 0.00 4.42
861 1059 2.165301 CCGTAAAAGGCGCGAGGAG 61.165 63.158 12.10 0.00 0.00 3.69
893 1091 1.898154 GATCCACCCTAGCACACGT 59.102 57.895 0.00 0.00 0.00 4.49
996 1209 2.582498 GTCGTTCGCCTCATCGGG 60.582 66.667 0.00 0.00 0.00 5.14
1065 1278 1.747367 CTGCTCGTCCTCGTCCTCT 60.747 63.158 0.00 0.00 38.33 3.69
1233 1446 1.310933 TGGAGTAGTCGGCCGAGTTC 61.311 60.000 38.35 32.23 0.00 3.01
1350 1563 3.052082 GCACGTGCATGCAGGAGT 61.052 61.111 38.75 26.90 45.39 3.85
1382 1602 4.669197 GCAAAGCAACAGATTAGTGGTACG 60.669 45.833 0.00 0.00 0.00 3.67
1624 1868 2.829741 AGCTTCGGAAGATGATAGCC 57.170 50.000 21.45 1.08 41.60 3.93
1824 2073 9.899661 AGCTCCAAGTGTACATACAATAATTAA 57.100 29.630 0.00 0.00 38.04 1.40
1825 2074 9.542462 GAGCTCCAAGTGTACATACAATAATTA 57.458 33.333 0.87 0.00 38.04 1.40
1826 2075 7.224753 CGAGCTCCAAGTGTACATACAATAATT 59.775 37.037 8.47 0.00 38.04 1.40
1827 2076 6.701841 CGAGCTCCAAGTGTACATACAATAAT 59.298 38.462 8.47 0.00 38.04 1.28
1828 2077 6.040247 CGAGCTCCAAGTGTACATACAATAA 58.960 40.000 8.47 0.00 38.04 1.40
1829 2078 5.358725 TCGAGCTCCAAGTGTACATACAATA 59.641 40.000 8.47 0.00 38.04 1.90
1895 2144 7.795734 GTGATGCAATTAACTAATCGATCAGTG 59.204 37.037 0.85 0.00 0.00 3.66
1928 2177 4.034510 GCCAAACAAGATAAGATCCGTGAG 59.965 45.833 0.00 0.00 0.00 3.51
1929 2178 3.938963 GCCAAACAAGATAAGATCCGTGA 59.061 43.478 0.00 0.00 0.00 4.35
1930 2179 3.941483 AGCCAAACAAGATAAGATCCGTG 59.059 43.478 0.00 0.00 0.00 4.94
1931 2180 4.222124 AGCCAAACAAGATAAGATCCGT 57.778 40.909 0.00 0.00 0.00 4.69
1964 2213 1.661112 GTACTGCAATCTCAAGCGTCC 59.339 52.381 0.00 0.00 0.00 4.79
1999 2251 8.635877 TCATTAAAGTGCAATTTTGTTAACGT 57.364 26.923 18.18 0.00 0.00 3.99
2089 2341 6.254804 GCACGTAACAACAGTGATCACATATA 59.745 38.462 27.02 8.76 38.06 0.86
2147 2400 1.078709 CACGCGACTGGTTCAATGAT 58.921 50.000 15.93 0.00 0.00 2.45
2189 2442 9.710900 GGTTAATCAAAAACCATTCTCAGATTT 57.289 29.630 0.19 0.00 44.83 2.17
2190 2443 8.028938 CGGTTAATCAAAAACCATTCTCAGATT 58.971 33.333 5.89 0.00 45.59 2.40
2191 2444 7.362920 CCGGTTAATCAAAAACCATTCTCAGAT 60.363 37.037 0.00 0.00 45.59 2.90
2192 2445 6.072175 CCGGTTAATCAAAAACCATTCTCAGA 60.072 38.462 0.00 0.00 45.59 3.27
2193 2446 6.092748 CCGGTTAATCAAAAACCATTCTCAG 58.907 40.000 0.00 0.00 45.59 3.35
2194 2447 5.047660 CCCGGTTAATCAAAAACCATTCTCA 60.048 40.000 0.00 0.00 45.59 3.27
2195 2448 5.407502 CCCGGTTAATCAAAAACCATTCTC 58.592 41.667 0.00 0.00 45.59 2.87
2196 2449 4.221924 CCCCGGTTAATCAAAAACCATTCT 59.778 41.667 0.00 0.00 45.59 2.40
2197 2450 4.500127 CCCCGGTTAATCAAAAACCATTC 58.500 43.478 0.00 0.00 45.59 2.67
2198 2451 3.307129 GCCCCGGTTAATCAAAAACCATT 60.307 43.478 0.00 0.00 45.59 3.16
2199 2452 2.235155 GCCCCGGTTAATCAAAAACCAT 59.765 45.455 0.00 0.00 45.59 3.55
2200 2453 1.619332 GCCCCGGTTAATCAAAAACCA 59.381 47.619 0.00 0.00 45.59 3.67
2201 2454 1.066716 GGCCCCGGTTAATCAAAAACC 60.067 52.381 0.00 0.00 42.52 3.27
2202 2455 1.619332 TGGCCCCGGTTAATCAAAAAC 59.381 47.619 0.00 0.00 0.00 2.43
2203 2456 2.011122 TGGCCCCGGTTAATCAAAAA 57.989 45.000 0.00 0.00 0.00 1.94
2204 2457 1.619332 GTTGGCCCCGGTTAATCAAAA 59.381 47.619 0.00 0.00 0.00 2.44
2205 2458 1.258676 GTTGGCCCCGGTTAATCAAA 58.741 50.000 0.00 0.00 0.00 2.69
2206 2459 0.961358 CGTTGGCCCCGGTTAATCAA 60.961 55.000 0.00 0.00 0.00 2.57
2207 2460 1.377463 CGTTGGCCCCGGTTAATCA 60.377 57.895 0.00 0.00 0.00 2.57
2208 2461 2.116533 CCGTTGGCCCCGGTTAATC 61.117 63.158 19.93 0.00 40.59 1.75
2209 2462 2.044749 CCGTTGGCCCCGGTTAAT 60.045 61.111 19.93 0.00 40.59 1.40
2233 2486 5.622346 ACAAATCAAGCCCAAGGTAAAAA 57.378 34.783 0.00 0.00 0.00 1.94
2234 2487 5.622346 AACAAATCAAGCCCAAGGTAAAA 57.378 34.783 0.00 0.00 0.00 1.52
2235 2488 5.363939 CAAACAAATCAAGCCCAAGGTAAA 58.636 37.500 0.00 0.00 0.00 2.01
2236 2489 4.202305 CCAAACAAATCAAGCCCAAGGTAA 60.202 41.667 0.00 0.00 0.00 2.85
2237 2490 3.323403 CCAAACAAATCAAGCCCAAGGTA 59.677 43.478 0.00 0.00 0.00 3.08
2238 2491 2.104622 CCAAACAAATCAAGCCCAAGGT 59.895 45.455 0.00 0.00 0.00 3.50
2239 2492 2.550639 CCCAAACAAATCAAGCCCAAGG 60.551 50.000 0.00 0.00 0.00 3.61
2240 2493 2.104622 ACCCAAACAAATCAAGCCCAAG 59.895 45.455 0.00 0.00 0.00 3.61
2241 2494 2.122768 ACCCAAACAAATCAAGCCCAA 58.877 42.857 0.00 0.00 0.00 4.12
2242 2495 1.799933 ACCCAAACAAATCAAGCCCA 58.200 45.000 0.00 0.00 0.00 5.36
2243 2496 2.158827 ACAACCCAAACAAATCAAGCCC 60.159 45.455 0.00 0.00 0.00 5.19
2244 2497 2.871633 CACAACCCAAACAAATCAAGCC 59.128 45.455 0.00 0.00 0.00 4.35
2245 2498 3.791245 TCACAACCCAAACAAATCAAGC 58.209 40.909 0.00 0.00 0.00 4.01
2246 2499 4.751098 CCATCACAACCCAAACAAATCAAG 59.249 41.667 0.00 0.00 0.00 3.02
2247 2500 4.444022 CCCATCACAACCCAAACAAATCAA 60.444 41.667 0.00 0.00 0.00 2.57
2248 2501 3.070734 CCCATCACAACCCAAACAAATCA 59.929 43.478 0.00 0.00 0.00 2.57
2249 2502 3.663025 CCCATCACAACCCAAACAAATC 58.337 45.455 0.00 0.00 0.00 2.17
2250 2503 2.224499 GCCCATCACAACCCAAACAAAT 60.224 45.455 0.00 0.00 0.00 2.32
2251 2504 1.139853 GCCCATCACAACCCAAACAAA 59.860 47.619 0.00 0.00 0.00 2.83
2252 2505 0.755686 GCCCATCACAACCCAAACAA 59.244 50.000 0.00 0.00 0.00 2.83
2253 2506 1.118356 GGCCCATCACAACCCAAACA 61.118 55.000 0.00 0.00 0.00 2.83
2254 2507 1.671166 GGCCCATCACAACCCAAAC 59.329 57.895 0.00 0.00 0.00 2.93
2255 2508 1.535202 GGGCCCATCACAACCCAAA 60.535 57.895 19.95 0.00 42.33 3.28
2256 2509 2.119391 GGGCCCATCACAACCCAA 59.881 61.111 19.95 0.00 42.33 4.12
2258 2511 2.362889 CTGGGCCCATCACAACCC 60.363 66.667 28.82 0.00 43.14 4.11
2259 2512 1.678970 GTCTGGGCCCATCACAACC 60.679 63.158 28.82 4.25 0.00 3.77
2260 2513 0.962356 CAGTCTGGGCCCATCACAAC 60.962 60.000 28.82 17.94 0.00 3.32
2261 2514 1.379916 CAGTCTGGGCCCATCACAA 59.620 57.895 28.82 5.84 0.00 3.33
2262 2515 1.426251 AACAGTCTGGGCCCATCACA 61.426 55.000 28.82 6.88 0.00 3.58
2263 2516 0.618458 TAACAGTCTGGGCCCATCAC 59.382 55.000 28.82 24.51 0.00 3.06
2264 2517 1.490490 GATAACAGTCTGGGCCCATCA 59.510 52.381 28.82 12.96 0.00 3.07
2265 2518 1.490490 TGATAACAGTCTGGGCCCATC 59.510 52.381 28.82 21.42 0.00 3.51
2266 2519 1.492176 CTGATAACAGTCTGGGCCCAT 59.508 52.381 28.82 12.47 39.11 4.00
2267 2520 0.911769 CTGATAACAGTCTGGGCCCA 59.088 55.000 26.67 26.67 39.11 5.36
2268 2521 3.788672 CTGATAACAGTCTGGGCCC 57.211 57.895 17.59 17.59 39.11 5.80
2278 2531 7.648039 ACCAAACCAAACTAAACTGATAACA 57.352 32.000 0.00 0.00 0.00 2.41
2279 2532 8.936070 AAACCAAACCAAACTAAACTGATAAC 57.064 30.769 0.00 0.00 0.00 1.89
2280 2533 9.372369 CAAAACCAAACCAAACTAAACTGATAA 57.628 29.630 0.00 0.00 0.00 1.75
2281 2534 7.492994 GCAAAACCAAACCAAACTAAACTGATA 59.507 33.333 0.00 0.00 0.00 2.15
2282 2535 6.315144 GCAAAACCAAACCAAACTAAACTGAT 59.685 34.615 0.00 0.00 0.00 2.90
2283 2536 5.639931 GCAAAACCAAACCAAACTAAACTGA 59.360 36.000 0.00 0.00 0.00 3.41
2284 2537 5.445275 CGCAAAACCAAACCAAACTAAACTG 60.445 40.000 0.00 0.00 0.00 3.16
2285 2538 4.627900 CGCAAAACCAAACCAAACTAAACT 59.372 37.500 0.00 0.00 0.00 2.66
2286 2539 4.389382 ACGCAAAACCAAACCAAACTAAAC 59.611 37.500 0.00 0.00 0.00 2.01
2287 2540 4.566987 ACGCAAAACCAAACCAAACTAAA 58.433 34.783 0.00 0.00 0.00 1.85
2288 2541 4.189639 ACGCAAAACCAAACCAAACTAA 57.810 36.364 0.00 0.00 0.00 2.24
2289 2542 3.870633 ACGCAAAACCAAACCAAACTA 57.129 38.095 0.00 0.00 0.00 2.24
2290 2543 2.753055 ACGCAAAACCAAACCAAACT 57.247 40.000 0.00 0.00 0.00 2.66
2291 2544 4.923264 TTTACGCAAAACCAAACCAAAC 57.077 36.364 0.00 0.00 0.00 2.93
2292 2545 5.934935 TTTTTACGCAAAACCAAACCAAA 57.065 30.435 0.00 0.00 33.39 3.28
2293 2546 7.333672 ACTTATTTTTACGCAAAACCAAACCAA 59.666 29.630 0.00 0.00 37.18 3.67
2294 2547 6.817140 ACTTATTTTTACGCAAAACCAAACCA 59.183 30.769 0.00 0.00 37.18 3.67
2295 2548 7.236674 ACTTATTTTTACGCAAAACCAAACC 57.763 32.000 0.00 0.00 37.18 3.27
2296 2549 7.636745 CCAACTTATTTTTACGCAAAACCAAAC 59.363 33.333 0.00 0.00 37.18 2.93
2297 2550 7.201617 CCCAACTTATTTTTACGCAAAACCAAA 60.202 33.333 0.00 0.00 37.18 3.28
2298 2551 6.258068 CCCAACTTATTTTTACGCAAAACCAA 59.742 34.615 0.00 0.00 37.18 3.67
2299 2552 5.753921 CCCAACTTATTTTTACGCAAAACCA 59.246 36.000 0.00 0.00 37.18 3.67
2300 2553 5.754406 ACCCAACTTATTTTTACGCAAAACC 59.246 36.000 0.00 0.00 37.18 3.27
2301 2554 6.831727 ACCCAACTTATTTTTACGCAAAAC 57.168 33.333 0.00 0.00 37.18 2.43
2302 2555 7.599245 CCATACCCAACTTATTTTTACGCAAAA 59.401 33.333 0.00 0.00 38.76 2.44
2303 2556 7.091443 CCATACCCAACTTATTTTTACGCAAA 58.909 34.615 0.00 0.00 0.00 3.68
2304 2557 6.208994 ACCATACCCAACTTATTTTTACGCAA 59.791 34.615 0.00 0.00 0.00 4.85
2305 2558 5.711036 ACCATACCCAACTTATTTTTACGCA 59.289 36.000 0.00 0.00 0.00 5.24
2306 2559 6.198650 ACCATACCCAACTTATTTTTACGC 57.801 37.500 0.00 0.00 0.00 4.42
2307 2560 7.030768 CCAACCATACCCAACTTATTTTTACG 58.969 38.462 0.00 0.00 0.00 3.18
2308 2561 7.038870 ACCCAACCATACCCAACTTATTTTTAC 60.039 37.037 0.00 0.00 0.00 2.01
2309 2562 7.017531 ACCCAACCATACCCAACTTATTTTTA 58.982 34.615 0.00 0.00 0.00 1.52
2310 2563 5.847265 ACCCAACCATACCCAACTTATTTTT 59.153 36.000 0.00 0.00 0.00 1.94
2311 2564 5.407936 ACCCAACCATACCCAACTTATTTT 58.592 37.500 0.00 0.00 0.00 1.82
2312 2565 5.018374 ACCCAACCATACCCAACTTATTT 57.982 39.130 0.00 0.00 0.00 1.40
2313 2566 4.685513 ACCCAACCATACCCAACTTATT 57.314 40.909 0.00 0.00 0.00 1.40
2314 2567 4.685513 AACCCAACCATACCCAACTTAT 57.314 40.909 0.00 0.00 0.00 1.73
2315 2568 4.153411 CAAACCCAACCATACCCAACTTA 58.847 43.478 0.00 0.00 0.00 2.24
2316 2569 2.969262 CAAACCCAACCATACCCAACTT 59.031 45.455 0.00 0.00 0.00 2.66
2317 2570 2.604139 CAAACCCAACCATACCCAACT 58.396 47.619 0.00 0.00 0.00 3.16
2318 2571 1.621317 CCAAACCCAACCATACCCAAC 59.379 52.381 0.00 0.00 0.00 3.77
2319 2572 1.483307 CCCAAACCCAACCATACCCAA 60.483 52.381 0.00 0.00 0.00 4.12
2320 2573 0.115349 CCCAAACCCAACCATACCCA 59.885 55.000 0.00 0.00 0.00 4.51
2321 2574 1.261938 GCCCAAACCCAACCATACCC 61.262 60.000 0.00 0.00 0.00 3.69
2322 2575 1.261938 GGCCCAAACCCAACCATACC 61.262 60.000 0.00 0.00 0.00 2.73
2323 2576 0.252057 AGGCCCAAACCCAACCATAC 60.252 55.000 0.00 0.00 0.00 2.39
2324 2577 1.383963 TAGGCCCAAACCCAACCATA 58.616 50.000 0.00 0.00 0.00 2.74
2325 2578 0.489567 TTAGGCCCAAACCCAACCAT 59.510 50.000 0.00 0.00 0.00 3.55
2326 2579 0.264955 TTTAGGCCCAAACCCAACCA 59.735 50.000 0.00 0.00 0.00 3.67
2327 2580 1.277842 CATTTAGGCCCAAACCCAACC 59.722 52.381 0.00 0.00 0.00 3.77
2328 2581 1.277842 CCATTTAGGCCCAAACCCAAC 59.722 52.381 0.00 0.00 0.00 3.77
2329 2582 1.132689 ACCATTTAGGCCCAAACCCAA 60.133 47.619 0.00 0.00 43.14 4.12
2330 2583 0.489567 ACCATTTAGGCCCAAACCCA 59.510 50.000 0.00 0.00 43.14 4.51
2331 2584 1.651737 AACCATTTAGGCCCAAACCC 58.348 50.000 0.00 0.00 43.14 4.11
2332 2585 2.353307 CGAAACCATTTAGGCCCAAACC 60.353 50.000 0.00 0.00 43.14 3.27
2333 2586 2.353307 CCGAAACCATTTAGGCCCAAAC 60.353 50.000 0.00 0.00 43.14 2.93
2334 2587 1.896465 CCGAAACCATTTAGGCCCAAA 59.104 47.619 0.00 0.00 43.14 3.28
2335 2588 1.551452 CCGAAACCATTTAGGCCCAA 58.449 50.000 0.00 0.00 43.14 4.12
2336 2589 3.274601 CCGAAACCATTTAGGCCCA 57.725 52.632 0.00 0.00 43.14 5.36
2340 2593 1.807742 TCAACGCCGAAACCATTTAGG 59.192 47.619 0.00 0.00 45.67 2.69
2341 2594 2.224549 TGTCAACGCCGAAACCATTTAG 59.775 45.455 0.00 0.00 0.00 1.85
2342 2595 2.219458 TGTCAACGCCGAAACCATTTA 58.781 42.857 0.00 0.00 0.00 1.40
2343 2596 1.001815 CTGTCAACGCCGAAACCATTT 60.002 47.619 0.00 0.00 0.00 2.32
2344 2597 0.591170 CTGTCAACGCCGAAACCATT 59.409 50.000 0.00 0.00 0.00 3.16
2345 2598 0.534203 ACTGTCAACGCCGAAACCAT 60.534 50.000 0.00 0.00 0.00 3.55
2346 2599 0.745128 AACTGTCAACGCCGAAACCA 60.745 50.000 0.00 0.00 0.00 3.67
2347 2600 0.316689 CAACTGTCAACGCCGAAACC 60.317 55.000 0.00 0.00 0.00 3.27
2348 2601 0.375803 ACAACTGTCAACGCCGAAAC 59.624 50.000 0.00 0.00 0.00 2.78
2349 2602 0.375454 CACAACTGTCAACGCCGAAA 59.625 50.000 0.00 0.00 0.00 3.46
2350 2603 0.460459 TCACAACTGTCAACGCCGAA 60.460 50.000 0.00 0.00 0.00 4.30
2351 2604 0.460459 TTCACAACTGTCAACGCCGA 60.460 50.000 0.00 0.00 0.00 5.54
2352 2605 0.586319 ATTCACAACTGTCAACGCCG 59.414 50.000 0.00 0.00 0.00 6.46
2353 2606 1.398451 CGATTCACAACTGTCAACGCC 60.398 52.381 0.00 0.00 0.00 5.68
2354 2607 1.260561 ACGATTCACAACTGTCAACGC 59.739 47.619 0.00 0.00 0.00 4.84
2355 2608 2.348498 CCACGATTCACAACTGTCAACG 60.348 50.000 0.00 0.00 0.00 4.10
2356 2609 2.612212 ACCACGATTCACAACTGTCAAC 59.388 45.455 0.00 0.00 0.00 3.18
2357 2610 2.912771 ACCACGATTCACAACTGTCAA 58.087 42.857 0.00 0.00 0.00 3.18
2358 2611 2.613026 ACCACGATTCACAACTGTCA 57.387 45.000 0.00 0.00 0.00 3.58
2359 2612 2.869801 TGAACCACGATTCACAACTGTC 59.130 45.455 0.00 0.00 33.62 3.51
2360 2613 2.872245 CTGAACCACGATTCACAACTGT 59.128 45.455 0.00 0.00 34.84 3.55
2361 2614 3.130633 TCTGAACCACGATTCACAACTG 58.869 45.455 0.00 0.00 34.84 3.16
2362 2615 3.469008 TCTGAACCACGATTCACAACT 57.531 42.857 0.00 0.00 34.84 3.16
2363 2616 3.873529 GTTCTGAACCACGATTCACAAC 58.126 45.455 9.38 0.00 34.84 3.32
2381 2634 4.550422 ACGTCTAGTTTAAGAACCGGTTC 58.450 43.478 35.28 35.28 39.78 3.62
2382 2635 4.590850 ACGTCTAGTTTAAGAACCGGTT 57.409 40.909 22.50 22.50 36.39 4.44
2383 2636 4.082733 GGTACGTCTAGTTTAAGAACCGGT 60.083 45.833 0.00 0.00 36.39 5.28
2384 2637 4.415735 GGTACGTCTAGTTTAAGAACCGG 58.584 47.826 0.00 0.00 36.39 5.28
2385 2638 4.082787 TGGGTACGTCTAGTTTAAGAACCG 60.083 45.833 0.00 0.00 36.39 4.44
2386 2639 5.164233 GTGGGTACGTCTAGTTTAAGAACC 58.836 45.833 0.00 0.00 36.39 3.62
2387 2640 5.631096 GTGTGGGTACGTCTAGTTTAAGAAC 59.369 44.000 0.00 0.00 35.97 3.01
2388 2641 5.562696 CGTGTGGGTACGTCTAGTTTAAGAA 60.563 44.000 0.00 0.00 39.13 2.52
2389 2642 4.083324 CGTGTGGGTACGTCTAGTTTAAGA 60.083 45.833 0.00 0.00 39.13 2.10
2390 2643 4.083324 TCGTGTGGGTACGTCTAGTTTAAG 60.083 45.833 0.00 0.00 44.06 1.85
2391 2644 3.818210 TCGTGTGGGTACGTCTAGTTTAA 59.182 43.478 0.00 0.00 44.06 1.52
2392 2645 3.188460 GTCGTGTGGGTACGTCTAGTTTA 59.812 47.826 0.00 0.00 44.06 2.01
2393 2646 2.030805 GTCGTGTGGGTACGTCTAGTTT 60.031 50.000 0.00 0.00 44.06 2.66
2394 2647 1.537202 GTCGTGTGGGTACGTCTAGTT 59.463 52.381 0.00 0.00 44.06 2.24
2395 2648 1.160137 GTCGTGTGGGTACGTCTAGT 58.840 55.000 0.00 0.00 44.06 2.57
2396 2649 1.135859 GTGTCGTGTGGGTACGTCTAG 60.136 57.143 0.00 0.00 44.06 2.43
2397 2650 0.874390 GTGTCGTGTGGGTACGTCTA 59.126 55.000 0.00 0.00 44.06 2.59
2398 2651 1.656441 GTGTCGTGTGGGTACGTCT 59.344 57.895 0.00 0.00 44.06 4.18
2399 2652 1.727022 CGTGTCGTGTGGGTACGTC 60.727 63.158 0.00 0.00 44.06 4.34
2400 2653 2.332514 CGTGTCGTGTGGGTACGT 59.667 61.111 0.00 0.00 44.06 3.57
2401 2654 3.101428 GCGTGTCGTGTGGGTACG 61.101 66.667 0.00 0.00 44.98 3.67
2402 2655 2.735857 GGCGTGTCGTGTGGGTAC 60.736 66.667 0.00 0.00 0.00 3.34
2403 2656 4.345962 CGGCGTGTCGTGTGGGTA 62.346 66.667 0.00 0.00 0.00 3.69
2420 2673 3.277211 TACGTGTCTGTCCAGCCGC 62.277 63.158 0.00 0.00 0.00 6.53
2421 2674 1.443872 GTACGTGTCTGTCCAGCCG 60.444 63.158 0.00 0.00 0.00 5.52
2422 2675 0.246635 ATGTACGTGTCTGTCCAGCC 59.753 55.000 0.00 0.00 0.00 4.85
2423 2676 2.527100 GTATGTACGTGTCTGTCCAGC 58.473 52.381 0.00 0.00 0.00 4.85
2424 2677 2.782163 CGTATGTACGTGTCTGTCCAG 58.218 52.381 0.00 0.00 44.13 3.86
2425 2678 2.905959 CGTATGTACGTGTCTGTCCA 57.094 50.000 0.00 0.00 44.13 4.02
2456 2709 3.894547 ATGTGTGTCCCGCCGAACC 62.895 63.158 0.00 0.00 0.00 3.62
2457 2710 2.358247 ATGTGTGTCCCGCCGAAC 60.358 61.111 0.00 0.00 0.00 3.95
2458 2711 1.817911 TACATGTGTGTCCCGCCGAA 61.818 55.000 9.11 0.00 39.77 4.30
2459 2712 1.609635 ATACATGTGTGTCCCGCCGA 61.610 55.000 9.11 0.00 39.77 5.54
2460 2713 0.742990 AATACATGTGTGTCCCGCCG 60.743 55.000 9.11 0.00 39.77 6.46
2461 2714 1.459450 AAATACATGTGTGTCCCGCC 58.541 50.000 9.11 0.00 39.77 6.13
2462 2715 2.031683 GCTAAATACATGTGTGTCCCGC 59.968 50.000 9.11 0.00 39.77 6.13
2463 2716 3.309682 CAGCTAAATACATGTGTGTCCCG 59.690 47.826 9.11 0.00 39.77 5.14
2464 2717 3.065371 GCAGCTAAATACATGTGTGTCCC 59.935 47.826 9.11 0.00 39.77 4.46
2465 2718 3.941483 AGCAGCTAAATACATGTGTGTCC 59.059 43.478 9.11 0.00 39.77 4.02
2466 2719 5.812642 AGTAGCAGCTAAATACATGTGTGTC 59.187 40.000 9.11 0.00 39.77 3.67
2467 2720 5.582269 CAGTAGCAGCTAAATACATGTGTGT 59.418 40.000 9.11 0.00 42.39 3.72
2468 2721 5.582269 ACAGTAGCAGCTAAATACATGTGTG 59.418 40.000 9.11 0.00 0.00 3.82
2469 2722 5.734720 ACAGTAGCAGCTAAATACATGTGT 58.265 37.500 9.11 0.00 0.00 3.72
2470 2723 6.756542 TGTACAGTAGCAGCTAAATACATGTG 59.243 38.462 9.11 0.00 0.00 3.21
2471 2724 6.873997 TGTACAGTAGCAGCTAAATACATGT 58.126 36.000 2.87 2.69 0.00 3.21
2472 2725 7.653311 TGATGTACAGTAGCAGCTAAATACATG 59.347 37.037 25.41 13.14 33.36 3.21
2473 2726 7.726216 TGATGTACAGTAGCAGCTAAATACAT 58.274 34.615 22.80 22.80 35.32 2.29
2474 2727 7.107639 TGATGTACAGTAGCAGCTAAATACA 57.892 36.000 17.74 17.74 0.00 2.29
2475 2728 8.594881 ATTGATGTACAGTAGCAGCTAAATAC 57.405 34.615 2.87 7.73 0.00 1.89
2477 2730 9.046296 GTAATTGATGTACAGTAGCAGCTAAAT 57.954 33.333 2.87 0.00 0.00 1.40
2478 2731 7.222031 CGTAATTGATGTACAGTAGCAGCTAAA 59.778 37.037 2.87 0.00 0.00 1.85
2479 2732 6.695713 CGTAATTGATGTACAGTAGCAGCTAA 59.304 38.462 2.87 0.00 0.00 3.09
2480 2733 6.183360 ACGTAATTGATGTACAGTAGCAGCTA 60.183 38.462 0.33 0.00 0.00 3.32
2481 2734 5.043903 CGTAATTGATGTACAGTAGCAGCT 58.956 41.667 0.00 0.00 0.00 4.24
2482 2735 4.804139 ACGTAATTGATGTACAGTAGCAGC 59.196 41.667 0.33 0.00 0.00 5.25
2483 2736 6.696198 CAACGTAATTGATGTACAGTAGCAG 58.304 40.000 0.33 0.00 41.23 4.24
2484 2737 5.062934 GCAACGTAATTGATGTACAGTAGCA 59.937 40.000 0.33 0.00 41.23 3.49
2485 2738 5.291128 AGCAACGTAATTGATGTACAGTAGC 59.709 40.000 0.33 0.00 41.23 3.58
2486 2739 6.887376 AGCAACGTAATTGATGTACAGTAG 57.113 37.500 0.33 0.00 41.23 2.57
2487 2740 6.474427 GCTAGCAACGTAATTGATGTACAGTA 59.526 38.462 10.63 0.00 41.23 2.74
2488 2741 5.291128 GCTAGCAACGTAATTGATGTACAGT 59.709 40.000 10.63 0.00 41.23 3.55
2489 2742 5.520288 AGCTAGCAACGTAATTGATGTACAG 59.480 40.000 18.83 0.00 41.23 2.74
2490 2743 5.416083 AGCTAGCAACGTAATTGATGTACA 58.584 37.500 18.83 0.00 41.23 2.90
2491 2744 5.968387 AGCTAGCAACGTAATTGATGTAC 57.032 39.130 18.83 0.00 41.23 2.90
2507 2760 1.770085 CGGCAAGCAAGCTAGCTAGC 61.770 60.000 33.96 33.96 45.89 3.42
2508 2761 1.156645 CCGGCAAGCAAGCTAGCTAG 61.157 60.000 19.70 16.84 45.89 3.42
2509 2762 1.153369 CCGGCAAGCAAGCTAGCTA 60.153 57.895 19.70 0.00 45.89 3.32
2511 2764 1.024579 TAACCGGCAAGCAAGCTAGC 61.025 55.000 6.62 6.62 34.17 3.42
2512 2765 1.009829 CTAACCGGCAAGCAAGCTAG 58.990 55.000 0.00 0.00 34.17 3.42
2513 2766 1.024579 GCTAACCGGCAAGCAAGCTA 61.025 55.000 20.63 0.00 38.63 3.32
2514 2767 2.335712 GCTAACCGGCAAGCAAGCT 61.336 57.895 20.63 0.00 38.63 3.74
2515 2768 1.866853 AAGCTAACCGGCAAGCAAGC 61.867 55.000 25.57 14.62 41.32 4.01
2516 2769 0.109597 CAAGCTAACCGGCAAGCAAG 60.110 55.000 25.57 15.62 41.32 4.01
2517 2770 1.956043 CAAGCTAACCGGCAAGCAA 59.044 52.632 25.57 0.00 41.32 3.91
2518 2771 2.625823 GCAAGCTAACCGGCAAGCA 61.626 57.895 25.57 0.00 41.32 3.91
2519 2772 2.179267 GCAAGCTAACCGGCAAGC 59.821 61.111 18.52 18.52 39.08 4.01
2520 2773 1.210155 GTGCAAGCTAACCGGCAAG 59.790 57.895 0.00 0.00 38.10 4.01
2521 2774 0.893270 ATGTGCAAGCTAACCGGCAA 60.893 50.000 0.00 0.00 38.10 4.52
2522 2775 0.035915 TATGTGCAAGCTAACCGGCA 60.036 50.000 0.00 0.00 34.17 5.69
2523 2776 0.377203 GTATGTGCAAGCTAACCGGC 59.623 55.000 0.00 0.00 0.00 6.13
2524 2777 1.665679 CTGTATGTGCAAGCTAACCGG 59.334 52.381 0.00 0.00 0.00 5.28
2525 2778 1.062587 GCTGTATGTGCAAGCTAACCG 59.937 52.381 0.00 0.00 0.00 4.44
2526 2779 2.083774 TGCTGTATGTGCAAGCTAACC 58.916 47.619 8.68 0.00 37.51 2.85
2527 2780 3.002791 TCTGCTGTATGTGCAAGCTAAC 58.997 45.455 8.68 0.00 40.13 2.34
2528 2781 3.333029 TCTGCTGTATGTGCAAGCTAA 57.667 42.857 8.68 0.00 40.13 3.09
2529 2782 3.548745 ATCTGCTGTATGTGCAAGCTA 57.451 42.857 8.68 0.00 40.13 3.32
2530 2783 2.414994 ATCTGCTGTATGTGCAAGCT 57.585 45.000 8.68 0.00 40.13 3.74
2531 2784 2.421073 TCAATCTGCTGTATGTGCAAGC 59.579 45.455 0.21 0.21 40.13 4.01
2532 2785 4.690184 TTCAATCTGCTGTATGTGCAAG 57.310 40.909 0.00 0.00 40.13 4.01
2533 2786 5.404096 CAATTCAATCTGCTGTATGTGCAA 58.596 37.500 0.00 0.00 40.13 4.08
2534 2787 4.142337 CCAATTCAATCTGCTGTATGTGCA 60.142 41.667 0.00 0.00 38.81 4.57
2535 2788 4.142315 ACCAATTCAATCTGCTGTATGTGC 60.142 41.667 0.00 0.00 0.00 4.57
2536 2789 5.571784 ACCAATTCAATCTGCTGTATGTG 57.428 39.130 0.00 0.00 0.00 3.21
2537 2790 6.209192 TGAAACCAATTCAATCTGCTGTATGT 59.791 34.615 0.00 0.00 44.94 2.29
2538 2791 6.623486 TGAAACCAATTCAATCTGCTGTATG 58.377 36.000 0.00 0.00 44.94 2.39
2539 2792 6.839124 TGAAACCAATTCAATCTGCTGTAT 57.161 33.333 0.00 0.00 44.94 2.29
2557 2810 5.968254 TGGTTCTTAGTTTTGGGTTGAAAC 58.032 37.500 0.00 0.00 37.28 2.78
2558 2811 5.128008 CCTGGTTCTTAGTTTTGGGTTGAAA 59.872 40.000 0.00 0.00 0.00 2.69
2559 2812 4.647399 CCTGGTTCTTAGTTTTGGGTTGAA 59.353 41.667 0.00 0.00 0.00 2.69
2560 2813 4.211920 CCTGGTTCTTAGTTTTGGGTTGA 58.788 43.478 0.00 0.00 0.00 3.18
2561 2814 3.958147 ACCTGGTTCTTAGTTTTGGGTTG 59.042 43.478 0.00 0.00 0.00 3.77
2562 2815 4.259933 ACCTGGTTCTTAGTTTTGGGTT 57.740 40.909 0.00 0.00 0.00 4.11
2563 2816 3.965470 ACCTGGTTCTTAGTTTTGGGT 57.035 42.857 0.00 0.00 0.00 4.51
2564 2817 5.278808 GCTTAACCTGGTTCTTAGTTTTGGG 60.279 44.000 16.75 0.00 0.00 4.12
2565 2818 5.278808 GGCTTAACCTGGTTCTTAGTTTTGG 60.279 44.000 16.75 0.00 34.51 3.28
2566 2819 5.278808 GGGCTTAACCTGGTTCTTAGTTTTG 60.279 44.000 16.75 0.00 39.10 2.44
2567 2820 4.831155 GGGCTTAACCTGGTTCTTAGTTTT 59.169 41.667 16.75 0.00 39.10 2.43
2568 2821 4.141111 TGGGCTTAACCTGGTTCTTAGTTT 60.141 41.667 16.75 0.00 39.10 2.66
2569 2822 3.396611 TGGGCTTAACCTGGTTCTTAGTT 59.603 43.478 16.75 0.00 39.10 2.24
2570 2823 2.983898 TGGGCTTAACCTGGTTCTTAGT 59.016 45.455 16.75 0.00 39.10 2.24
2571 2824 3.713826 TGGGCTTAACCTGGTTCTTAG 57.286 47.619 16.75 12.74 39.10 2.18
2572 2825 5.987019 ATATGGGCTTAACCTGGTTCTTA 57.013 39.130 16.75 4.52 39.10 2.10
2573 2826 4.881157 ATATGGGCTTAACCTGGTTCTT 57.119 40.909 16.75 2.35 39.10 2.52
2574 2827 5.014228 GGATATATGGGCTTAACCTGGTTCT 59.986 44.000 16.75 0.00 39.10 3.01
2575 2828 5.254115 GGATATATGGGCTTAACCTGGTTC 58.746 45.833 16.75 1.42 39.10 3.62
2576 2829 5.256806 GGATATATGGGCTTAACCTGGTT 57.743 43.478 17.44 17.44 39.10 3.67
2577 2830 4.929146 GGATATATGGGCTTAACCTGGT 57.071 45.455 0.00 0.00 39.10 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.