>input_sequence_74596
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------------ATGAGGCGAACGACGAGCTTGACGGAGGTCGCGCCGCCGTCGGTGCTGGCGGTGGTGTTGGAGGAAGA
GGACGAGGACGAGCAGGTCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGGCAGGACTGGCTGGCGGCCC
TAGGCGGCGGCAGCGGTGCCCCCGGGACGGACTGGCTAGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTC
CGGCGGAACTCGGCCGACTACTCCAAGGTCGAGACCGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTCCTCGG
CCCCGGCCGCGACACCTTCATGTACAAGTACGTGAGCTGTCCACTCCTGCATGCACG-------TGCATCCATGGCCAAG
TCGTACCA------------CT------------AATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGC
GAGGCGGCGTTCTGCAGCCTGGAGTGCCGGCAGCAGCACATAACGCACGAGGAGTGGAAGGACAAGTGCACGTCAAGGTC
CATGAGCGAGGCGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCT
GA------------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G200000
GAGTAAGACCAAGTCACCTAGGCAGTGACACCTACACCAAAAATCAACACCAAAGCAAGTTTGATGAAAAGATACCACCT
CTGCTATTTTTTTAAGACAAACAACTGTAGTGGTGTAGATCTTGCACATAATTGTAGATGATCCATGGTCTACTTCTCGT
TGTCGTTGTTTTTGACGACCAACCATGCAAGGCGTGGAGTCGAAAAGTAGGAAGAAAAAGAAGTCTAGCAAGTATATCGA
TAGATGAATTTGATGACAGCATGATGCATGTTGTTCCTTTCAACTTTTCAACACAAGTTAGGCACTCATATATGTACTTT
GTTGGTTTGAATATGACATTTCTGAATTACAAAGTAAATAAATTATATATGAGGTCTACAGTTGCTACGTAACCCAACCA
CAAACTGAGCTTTCATCTCATGCATCGAGCTGCTGAATCACACGTCCTCTCTTTCTATCCTTCACAAAAACTTCTTGGTC
ACAATAATGCTCCTCCTCCTACTACTACTAGCAAAAAAAAA--CCAATGAAAGTTGCCAAGAGGCGCCTGGAATCGTAAT
AAATTCGGCGAACGACGTTGCGACAGGCCCCCGACCGAGCGCCCGGAAGAGAACAAGCGCGCAGCAA-------------
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-----TCAGGCGCGAGCACGAGGCGGCCCAGGGCCCAGGG-------GAATAACAATCAGTGCGCTGACGTGGATCCGAT
TGGTCATGGGACCCCATCCGACGGCCCAGACCCTTTTCCTCTTCTTTTATCTTCCCCCCTCCTCCCTCCCA-CCCTCTCG
CAGTCGCAGATTCCCACCCTCGTCTCATCCTCTCCACACGCGCACATACGCACTTCCATGGCCGCCGCCTCC--------
-CCTCCTCCCAGCTCCGCCTCCTCGCGCCTTTTACGGACTTTGCGAGCGTACGTGTGCTAGGGTGGATCGCGCAAGAGCA
GAGG----CGTACGTCTTGGTTTGTCG-TTAAGGGAGGAGCTAGGCCGTGGTGTGGGGTGGAGCTAGCTGGGGGAT----
------AACCCGATGAGGCGAACGACGAGCTTGACGGAGGTCGCGCCGCCGTCGGTGCTGGCGGTGGTGTTGGAGGAAGA
GGACGAGGACGAGCAGGTCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGGCAGGACTGGCTGGCGGCCC
TAGGCGGCGGCAGCGGTGCCCCCGGGACGGACTGGCTAGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTC
CGGCGGAACTCGGCCGACTACTCCAAGGTCGAGACCGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTCCTCGG
CCCCGGCCGCGACACCTTCATGTACAAGTACGTGAGCTGTCCACTCCTGCATGCACG-------TGCATCCATGGCCAAG
TCGTACCA------------CT------------AATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGC
GAGGCGGCGTTCTGCAGCCTGGAGTGCCGGCAGCAGCACATAACGCACGAGGAGTGGAAGGACAAGTGCACGTCAAGGTC
CATGAGCGAGGCGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCT
GACCTGACAGCGCACGAGAGGCAGGCAGGCTATCATCTTCCGAAGCTACCTGCC--GGCCAGTAGCTCTGGAAGCTCTCG
CTTCTCACCGCCCGCTACGCATGTATTACTCTCGTAC---GTACGTACGAACGCCTCCAATATGAATCGCTGGTAATCGA
TCTGTGGAGGCCGTCAGCCACCGCTGGTCGATCGATCGACCATCGCCTCAGTACAACTGCATAGCTTTTTTATTAATTAT
TGTATGTACACTTGGAGCTCGAATCCGTTTCTGAGATCGTTCCTTCCTACGGTACTACTCCACCACTGATCGATTAGTTA
ATTGCATCACCTCATCCTCACGGATCTTATCTTGTTTGGCTTTGTGCATCCTGGACGCTTGAGATTGCAGTACTGCGTA-
--GACCGAATACGTTAACAAAATTGCACTTTAATGAAGAGAGAAAAACAATCTTATCTTGCCTAGTGTAATCAAGTCTTG
GTGATGTGTGCAGTCAAAAAT-ATATGTGATCACTGTTGTTACGTGCTCGTGAGGCCGCCGCCAGGCTGAAAGTTAAGAA
TCATTGAACCAGTCGCGTGGTAACTAATCAATCCCGTGAGTAAATCTGAGAATGGTTTTTGATTAACCGGGGCCAACGGT
TTGGTTTTTTACCTTGGGCTTGATTTGTTTGGGTTGTGATGGGCCCAGACTGTTATCAGTTTAGTTTGGTTTGGTTTTGC
GTAAAAATAAGTTGGGTATGGTTGGGTTTGGGCCTAAATGGTTTCGGCGTTGACAGTTGTGAATCGTGGTTCAGAACCGG
TTCTTAAACTAGACGTACCCACACGACACGCCGCGGCTGGACAGACACGTACATACGCTACGCGACGCGGTTCGGCGGGA
CACACATGTATTTAGCTGCTACTGTACATCAATTACGTTGCTAGCTAGCTTGCTTGCCGGTTAGCTTGCACATACAGCAG
ATTGAATTGGTTTCAACCCAAAACTAAGAACCAGGTTAAGCCCATATATCC
>chr5B_1
GAGTAAGACCAAGTCACCTAAGCAGTGACCCCTACACCAAAAATCAACACCAAAGCGAGTTTGATGAAAAGATACCACCT
CTGCTATTTTTTG-AGACAAACAACTATAGTGGTGTAGAT---------AATTGTAGATGATCCATGATCTGCTTCTCAT
TATCATTGTTTTTGACAACCAACCATGCAAGGCGCGGAGTCGAAAAGAAGGAAGAAAAAGAAGTCTAGCAAGCATATTGA
TAGATGAATTTGATGACAGCATGATGCATGTTGTTCCTTTCAACTTTTCAACACAAGTTAGGCACTCATATATGTACTTT
GTTGGTTTGAATATGTCATTTCTGAATTACAAAGTAAATGAATAATATATGAGGTCTACAGTTGCTACGTAACCCAACCA
CAAACTCAGCTTTCATCTCATGCATCGAGCTGCTGAATCACACGTCCTCTTTTTCTATCCTTCACAAAAACTTCTTGGTC
ACAATCATGCTCCTCCTCCTACTACTACTAGCAAAAAAAAAAACCGATGAAAGTTGCCAAGAGGCGCCTGGAATCGTAAT
AAATTCGGCGAACGACGTTGCGACAGG-CCCCGACCGAGCGCCCGGAAGAGAACAAGCGCGCAGCAAAAATGATAGACAT
ACAAAGACTTACACGCTTTTACACGCTTTTTTCATCTAACAACCAATCATAAATCTCTCCCCCCCCTGATTTTCAGAGGG
TGGGTCATCCCGCTCACCTATTGACCAATCAAAGTTAACCATCATGTAAAAGTCTGTAAATCGTTTGTACGTGTAGCATT
GCCGATCAGGCGCGAGCACGAGGCGGCCCAGGGCCCAGGG-------GAATAACAATCAGTGCGCTGACGTGGATCCGAT
CGGTCATGGGACCCCATCCGACGGCCCAGATCCTTTTCCTCCTCTTTTATC-TCCCCCCTCCTCCCTCCCAACCCTCTCG
CAGTCGCAGATTCCCACCCTCGTCTCCTCCTCTCCACACACGCACGGACGCACTTCCATGGCCGCCGCCTCCTCGTCGTC
CCCCCCTCCCAGCCCCGCTTCATCGTGCCTTTTACGGAGTTTGCGAGCGTGCATGTGCTAGGGTGGATCGTGCAAGAGCG
GAGGCGTACGTACGTCTTGGTTTGTTGGTGAAGGGAGGAGCTAGGCTGTGGTGCGGGGTGGAGCTAGCTGGGGGATAGCC
TGCAAGAAGCCGATGAGGCGAACGACTAGCTTGACGGAGGTCGCGCCGCCGTCGGTGCTGGCGGTGGTGTTGGAGGACGA
GGACGAGGACGAGCTGGTCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGCCAGGACTGGCTGGCGGCCC
TAGGCGGCGGCAGCGATGCCCCCGGGACGGACTGGCTAGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTC
CGGCGCAACTCGGCCGACTACTCCAAGGTCGAGACCGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTTCTCGG
CCCCGGTCGCGACACCTTCATGTACAAGTACGTGAGCTGTCCGCTCCTGCATGCACG-------TGCATCCATGGCGAAG
TTGTACCG------------CTAGCCAATATACCAATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGC
GAGGCGGCGTTCTGCAGCCTGGAGTGCCGGCAGCAGCACATAACCCACGAGGAGTGGAAGGACAAGCGCACGTCAAGGTC
CATGAGCGAGGCGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCT
GACCTGACAGCGCACGAGAGGCAGGCACGCTATCATCTTCCGAAGCTACCTGCCAAGGCCAGTAGCTCTCAG--------
------------CGCTACGCATGTATTACTC---------GTACGTACGTACGCCTCGACTATGAATCGCTGGTAATCGA
TCTGTGCAGGCCGTCAACCACCGCTGGTCGATCGATCGACCATCGCCTCAGTACAACTGCATAGCTTTTTATCA----AT
TGTATGTACACTCGGAGCTCGAATCCGTTTCTGAGATCGTTCCTTCCTACGGTACTACTACACTACTGATCGATTAGTTA
ATTGCATCACCTCA------CGGATCTTATCTTGTTTGGCTTTGTGCATCCTCGACGCTTCATATTGCAGTACTGCGTAC
TAGACCTAATGCGTTAACAAAATTGCATTTTAATGAACAGAGAAAAACAATCTTATCTTGCCTAGTGTAATCAAGTCTTG
GTGATGTGTGCAGTCAAAAAAAATATGTGACCACTGTTGTTACGTGCTCGTGAGGCCGCCGCCAGGCTGAAAGTTAAGAG
TCATTGAACCAGTCGCGTGGTAACTAATCAATCCGTGAG-----------------------------------------
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>chr5A_346
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-------------------------ATTACAAAGTAAATAAAAAATATATGGGGTCTACAGTTGCTACGTAACCCAACCA
CAAACTCAGCTTTCATCTCATGCATCGAGCTGCTGAATCACACGTCCTCCCTTTCTATCCTTCACAAAAACTTCACCGTC
ACAATAATGCTCCTCCTCCTGCTACTGGTAGCAAAAACCAG--CCAATGAAAGTTGCCAAGAGGTGCCTGGAATCGTAAT
AAATTCGGCGAACGACGTTGCGACAGGCCCCCGACCGAGCGCCCGGAAGCGAACAAGCGCGCAGCAA-------------
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-----TCAGGCGCGAGCACGATGCGGCCCAGGGCCCAGGGCCCAGGGGAATAACAATCAGTGCGCTGACGTGGATCCGAT
CGGTCATGGGACCCCATCCGACGGCCCAGATCCTTTCCCCCCTCTTT-ATC-TTCCCCCTCCTCCCTCCCACCC---TCG
CCGTCGCAGATCCCCACCCTCGTCTCTTCCTCTCCACAAGCACACTGACGCACTTCCATGGCCGCCGCCTCCTCCTCGTC
CCCCCCTCCCAGCTCCGCTTCCTCGCACCATTTACGGACTTTGCGGGCGTGCGTCTGGTAGGGTGGATCGTGCGAGAGCA
GAGG----CGTACGTCTTGGTTTGTCGGTTAAGGGAGGAGCTAGGCTGTGGTGTGGGGTGGAGCTAGGTGGGGGAACG--
----------CGATGAGGCGAACGACGAGCTTGAGGGAGGTCGCGCCGCCGTCCGTGTTGGCGGTGGTGTTGGAGGACGA
GGACGAGGACGAGCAGGCCAAGGCGGTGGTGCAGGCCGAAGAAGGTGGCGCCGGCGGGGGGCAGGACTGGCTGGCGGCCC
TAGGCGGCGGCAGCGGGGCCCCCGGGACGGACTGGCTCGCGGCGTACCGCGCGCGCGCGGCGCCGGCGCGGGCGGGGCTC
CGGCGCAACTCGGCCGACTACTCCAAGGTCGAGACGGCCGCGTTCCTCCGCCACTGCGGCCTCTGCCGCCGCCTCCTCGG
CCCCGGCCGCGACACCTTCATGTACAAGTACGTGAGCTGTCCGCCCCTGCATGCACGTGCAACGTGCATCAATGGCCAAG
TAGCACCACTAGCCAATATACT------------AATCTGTTGCTTTGCTTCTGCTTCCGTTGCACGATTTTTCAGGGGC
GAGGCGGCCTTCTGCAGCCTGGAGTGCCGGCAGCAGCACATAACGCACGAGGAGTGGAAGGACAAGTGCACGCCAAGGTC
CATGAGCGAGGCGGCGGCGCCGGCGACCAGCCGCGGCCGCTCCGGCAAGACCGACACCGGCGGCACGGTGGCGGCGGCCT
AACCTGACGGCGCACGAGAGGCAGGCACGCTATCATCTTCCGAAGCTACCTGCC--GGCCAGTAGCTCTGGAAGCTCTCG
CTTCTCACCGCCCGCTACGCATGTATTACTCTCGTACGTAGTACGTACGAACGCCTCCAATATGAATCGCTGGTAATC--
--TGTGCAGGCCGTCAGCCACCGCTGGTCGATCGATCGACCATCGCCTCAGTACAACTGCATAGCTTTTTATCA----AT
TGTATGTACACTTGGAGCTCGAATCCGTTTATGAGATCGTTCCTTCCTACGGTC---CTCCACTACTGATCGATTAGTTA
ATTGCATCACCTCA------CGGATCTTATCTTGTTTGGCTTTGTGCATCCTCGACGGTTCATATTGCAGCACTGCGTA-
--GACCGAATCCGTTAACGAAATTGCACTTTAATGAAGAGAGAAAAACAACCTTATCTTGCCTAGTGTAATCAAGTCTTG
GTGATGTGTGCAGTCAAAAGGG--ATGTGATCACTGTTGTTACGTGCTCGTGAGGCCGCCGCCAGGCTGAAAGTTAAGAG
TCATTGAACCAGTCGCGTGGTTACTAATCAATCCCGTGAG----------------------------------------
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>SNPs
--------------------S--------S--------------------------S-----------------------
------------SS------------S-------------SSSSSSSSS------------------S---S------S-
-S--S-----------S-----------------S------------S------------------------S----S--
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---------------S---------------------------S------------------------------------
------S-------------------------------------------------------------------------
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S-----------------------------S----------S---------S----------------------------
--------------------------S------------------SS---------------------------------
---S--------------S-------------------------------S-------------------S---------
----------------------------------------------S---------------------------------
--------S--------------------------------------------------------------------S--
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-----S--------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-S------------------------------------------------------------------------------
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---------------------------S----------------------------------------------------
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------S---------------------------------------------------------------SSSSSSSS--
---------------------------------------------------------------S----------------
--------------SSSSSS--------------------------------S-------S-S-----------------
----------S---------------------------------------------------------------------
--------------------S----------------------------------------------------------S
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_987
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-------AGATTCCCACCCTCGTCTCA-----------------------------------------------------
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>reverse_2775
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------------------------------------------------------TGCCGGTTAGCTTGCACATA------
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