Multiple sequence alignment - TraesCS5D01G195200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G195200 chr5D 100.000 2372 0 0 1 2372 298862374 298864745 0.000000e+00 4381.0
1 TraesCS5D01G195200 chr5B 92.144 2024 101 21 1 1987 339534801 339536803 0.000000e+00 2804.0
2 TraesCS5D01G195200 chr5B 87.456 287 28 2 2094 2372 339537009 339537295 8.180000e-85 324.0
3 TraesCS5D01G195200 chr5A 91.351 2058 92 35 1 2016 398927567 398925554 0.000000e+00 2736.0
4 TraesCS5D01G195200 chr4D 100.000 29 0 0 2013 2041 450649018 450649046 1.000000e-03 54.7
5 TraesCS5D01G195200 chr4A 100.000 29 0 0 2011 2039 118637073 118637045 1.000000e-03 54.7
6 TraesCS5D01G195200 chr4A 100.000 28 0 0 2012 2039 107368846 107368873 4.000000e-03 52.8
7 TraesCS5D01G195200 chr4A 100.000 28 0 0 2012 2039 107422483 107422510 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G195200 chr5D 298862374 298864745 2371 False 4381 4381 100.000 1 2372 1 chr5D.!!$F1 2371
1 TraesCS5D01G195200 chr5B 339534801 339537295 2494 False 1564 2804 89.800 1 2372 2 chr5B.!!$F1 2371
2 TraesCS5D01G195200 chr5A 398925554 398927567 2013 True 2736 2736 91.351 1 2016 1 chr5A.!!$R1 2015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 270 0.179062 GACTAGCATGGCCTCTGTGG 60.179 60.0 3.32 0.0 39.35 4.17 F
304 309 0.249489 GCGTGTACTGGGCTCCATAG 60.249 60.0 0.00 0.0 30.82 2.23 F
914 931 0.318360 TACTGCTGTGTTGTCCGTCG 60.318 55.0 6.48 0.0 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1113 1130 0.179134 CCGCCTTACCGTTCAGAGAG 60.179 60.0 0.0 0.0 0.0 3.20 R
1224 1253 0.250209 CATGGCGGATCTTGGAGGAG 60.250 60.0 0.0 0.0 0.0 3.69 R
1924 2002 0.685660 GTGGAGGAAAGGAGACCGTT 59.314 55.0 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.449746 AACCATAGGCCAGCTGTTTAA 57.550 42.857 13.81 0.00 0.00 1.52
89 93 3.758023 TGCACGACTTTGGATTCATGATT 59.242 39.130 0.00 0.00 0.00 2.57
135 139 1.340568 TGTTGTGGTGTCCATGCATTG 59.659 47.619 0.00 0.00 35.28 2.82
169 173 3.813166 TCTTTTCTTGTCCTTTAGGTGCG 59.187 43.478 0.00 0.00 36.34 5.34
266 270 0.179062 GACTAGCATGGCCTCTGTGG 60.179 60.000 3.32 0.00 39.35 4.17
293 298 5.830000 TGTATCAGATACAAGCGTGTACT 57.170 39.130 19.29 10.98 42.99 2.73
304 309 0.249489 GCGTGTACTGGGCTCCATAG 60.249 60.000 0.00 0.00 30.82 2.23
331 336 0.517316 GTGTGAGCCTTGGTTTAGCG 59.483 55.000 0.00 0.00 0.00 4.26
375 380 6.414987 GCACTGTTAGTTTCAAGTTGATTGTC 59.585 38.462 6.36 0.00 40.05 3.18
675 682 2.773661 TGTCCAGATGCCATGATACACT 59.226 45.455 0.00 0.00 0.00 3.55
741 754 4.706962 ACAAGATAATTTTGGGAGAGGTGC 59.293 41.667 0.00 0.00 0.00 5.01
914 931 0.318360 TACTGCTGTGTTGTCCGTCG 60.318 55.000 6.48 0.00 0.00 5.12
1134 1154 3.186047 CTGAACGGTAAGGCGGCG 61.186 66.667 0.51 0.51 0.00 6.46
1181 1201 0.464870 CTCAGGTGGAGCAGGATCAG 59.535 60.000 0.00 0.00 36.69 2.90
1222 1251 2.617538 TCTCCGACCCCTCCTCCT 60.618 66.667 0.00 0.00 0.00 3.69
1223 1252 2.123640 CTCCGACCCCTCCTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
1224 1253 3.742248 CTCCGACCCCTCCTCCTCC 62.742 73.684 0.00 0.00 0.00 4.30
1225 1254 3.756783 CCGACCCCTCCTCCTCCT 61.757 72.222 0.00 0.00 0.00 3.69
1226 1255 2.123640 CGACCCCTCCTCCTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
1227 1256 2.284151 GACCCCTCCTCCTCCTCC 59.716 72.222 0.00 0.00 0.00 4.30
1228 1257 2.204705 ACCCCTCCTCCTCCTCCT 60.205 66.667 0.00 0.00 0.00 3.69
1229 1258 2.306715 GACCCCTCCTCCTCCTCCTC 62.307 70.000 0.00 0.00 0.00 3.71
1230 1259 2.612251 CCCTCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1350 1379 1.773635 TGGTAACAGGGGCAAGCAT 59.226 52.632 0.00 0.00 46.17 3.79
1450 1489 4.987912 TGCGTGTGTATGATGTGGTATATG 59.012 41.667 0.00 0.00 0.00 1.78
1451 1490 4.388773 GCGTGTGTATGATGTGGTATATGG 59.611 45.833 0.00 0.00 0.00 2.74
1452 1491 5.538118 CGTGTGTATGATGTGGTATATGGT 58.462 41.667 0.00 0.00 0.00 3.55
1453 1492 6.683715 CGTGTGTATGATGTGGTATATGGTA 58.316 40.000 0.00 0.00 0.00 3.25
1454 1493 6.806739 CGTGTGTATGATGTGGTATATGGTAG 59.193 42.308 0.00 0.00 0.00 3.18
1519 1562 1.075301 TGCCGGGATGGATCTGAGA 60.075 57.895 2.18 0.00 42.00 3.27
1520 1563 0.472543 TGCCGGGATGGATCTGAGAT 60.473 55.000 2.18 0.00 42.00 2.75
1537 1597 0.510359 GATTGCTGATCGATCGTGCC 59.490 55.000 28.30 16.33 0.00 5.01
1539 1599 3.032609 GCTGATCGATCGTGCCCG 61.033 66.667 24.00 9.85 0.00 6.13
1544 1604 1.867919 GATCGATCGTGCCCGGATCT 61.868 60.000 15.94 0.00 31.01 2.75
1582 1642 2.450160 GCCGATTTTAAGTTGATGCCG 58.550 47.619 0.00 0.00 0.00 5.69
1590 1650 0.539438 AAGTTGATGCCGGGCAGAAA 60.539 50.000 27.62 19.84 43.65 2.52
1625 1689 2.280389 ACAGCTGTGCCGTGTGAG 60.280 61.111 20.97 0.00 0.00 3.51
1631 1695 0.809636 CTGTGCCGTGTGAGTTGTGA 60.810 55.000 0.00 0.00 0.00 3.58
1641 1705 4.143242 CGTGTGAGTTGTGATGTGAAGATC 60.143 45.833 0.00 0.00 0.00 2.75
1662 1726 0.034089 CCCTTCTCCCATGAACCACC 60.034 60.000 0.00 0.00 0.00 4.61
1699 1770 3.008485 GGGGGTTAGATTGAGATAGGCAG 59.992 52.174 0.00 0.00 0.00 4.85
1772 1848 2.556622 TCGTGAAATTCCTTTTGGCTCC 59.443 45.455 0.00 0.00 40.12 4.70
1777 1853 5.007626 GTGAAATTCCTTTTGGCTCCAAAAC 59.992 40.000 19.62 10.75 46.80 2.43
1845 1921 0.662374 CTTTGCAGCTTGCTTCCACG 60.662 55.000 9.12 0.00 45.31 4.94
1923 2001 4.038042 CCTTGAGCCGTCAACTAGATGATA 59.962 45.833 5.94 0.00 37.79 2.15
1924 2002 5.451937 CCTTGAGCCGTCAACTAGATGATAA 60.452 44.000 5.94 0.00 37.79 1.75
1976 2057 1.207329 CCCCCGTTCTTTTCTCTCGAT 59.793 52.381 0.00 0.00 0.00 3.59
2016 2255 4.152580 GCTCGTGCTCTTAAAAAGCTACTT 59.847 41.667 1.41 0.00 40.50 2.24
2017 2256 5.669111 GCTCGTGCTCTTAAAAAGCTACTTC 60.669 44.000 1.41 0.00 40.50 3.01
2018 2257 4.689345 TCGTGCTCTTAAAAAGCTACTTCC 59.311 41.667 10.04 0.00 40.50 3.46
2019 2258 4.691216 CGTGCTCTTAAAAAGCTACTTCCT 59.309 41.667 10.04 0.00 40.50 3.36
2020 2259 5.163943 CGTGCTCTTAAAAAGCTACTTCCTC 60.164 44.000 10.04 0.00 40.50 3.71
2021 2260 5.122554 GTGCTCTTAAAAAGCTACTTCCTCC 59.877 44.000 10.04 0.00 40.50 4.30
2022 2261 4.330347 GCTCTTAAAAAGCTACTTCCTCCG 59.670 45.833 0.00 0.00 36.80 4.63
2023 2262 5.479124 TCTTAAAAAGCTACTTCCTCCGT 57.521 39.130 0.00 0.00 0.00 4.69
2024 2263 5.476614 TCTTAAAAAGCTACTTCCTCCGTC 58.523 41.667 0.00 0.00 0.00 4.79
2025 2264 2.764439 AAAAGCTACTTCCTCCGTCC 57.236 50.000 0.00 0.00 0.00 4.79
2026 2265 0.903236 AAAGCTACTTCCTCCGTCCC 59.097 55.000 0.00 0.00 0.00 4.46
2027 2266 0.252103 AAGCTACTTCCTCCGTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
2028 2267 0.971447 AGCTACTTCCTCCGTCCCAC 60.971 60.000 0.00 0.00 0.00 4.61
2029 2268 1.255667 GCTACTTCCTCCGTCCCACA 61.256 60.000 0.00 0.00 0.00 4.17
2030 2269 1.263356 CTACTTCCTCCGTCCCACAA 58.737 55.000 0.00 0.00 0.00 3.33
2031 2270 1.831736 CTACTTCCTCCGTCCCACAAT 59.168 52.381 0.00 0.00 0.00 2.71
2032 2271 1.946984 ACTTCCTCCGTCCCACAATA 58.053 50.000 0.00 0.00 0.00 1.90
2033 2272 2.478292 ACTTCCTCCGTCCCACAATAT 58.522 47.619 0.00 0.00 0.00 1.28
2034 2273 3.649843 ACTTCCTCCGTCCCACAATATA 58.350 45.455 0.00 0.00 0.00 0.86
2035 2274 4.035112 ACTTCCTCCGTCCCACAATATAA 58.965 43.478 0.00 0.00 0.00 0.98
2036 2275 4.101119 ACTTCCTCCGTCCCACAATATAAG 59.899 45.833 0.00 0.00 0.00 1.73
2037 2276 3.918566 TCCTCCGTCCCACAATATAAGA 58.081 45.455 0.00 0.00 0.00 2.10
2038 2277 3.895656 TCCTCCGTCCCACAATATAAGAG 59.104 47.826 0.00 0.00 0.00 2.85
2039 2278 3.895656 CCTCCGTCCCACAATATAAGAGA 59.104 47.826 0.00 0.00 0.00 3.10
2040 2279 4.344102 CCTCCGTCCCACAATATAAGAGAA 59.656 45.833 0.00 0.00 0.00 2.87
2041 2280 5.012148 CCTCCGTCCCACAATATAAGAGAAT 59.988 44.000 0.00 0.00 0.00 2.40
2042 2281 6.210784 CCTCCGTCCCACAATATAAGAGAATA 59.789 42.308 0.00 0.00 0.00 1.75
2043 2282 6.989659 TCCGTCCCACAATATAAGAGAATAC 58.010 40.000 0.00 0.00 0.00 1.89
2044 2283 6.014840 TCCGTCCCACAATATAAGAGAATACC 60.015 42.308 0.00 0.00 0.00 2.73
2045 2284 6.164176 CGTCCCACAATATAAGAGAATACCC 58.836 44.000 0.00 0.00 0.00 3.69
2046 2285 6.014499 CGTCCCACAATATAAGAGAATACCCT 60.014 42.308 0.00 0.00 0.00 4.34
2047 2286 7.387643 GTCCCACAATATAAGAGAATACCCTC 58.612 42.308 0.00 0.00 0.00 4.30
2048 2287 6.500751 TCCCACAATATAAGAGAATACCCTCC 59.499 42.308 0.00 0.00 33.76 4.30
2049 2288 6.296489 CCCACAATATAAGAGAATACCCTCCC 60.296 46.154 0.00 0.00 33.76 4.30
2050 2289 6.272324 CCACAATATAAGAGAATACCCTCCCA 59.728 42.308 0.00 0.00 33.76 4.37
2051 2290 7.037297 CCACAATATAAGAGAATACCCTCCCAT 60.037 40.741 0.00 0.00 33.76 4.00
2052 2291 9.046846 CACAATATAAGAGAATACCCTCCCATA 57.953 37.037 0.00 0.00 33.76 2.74
2053 2292 9.629649 ACAATATAAGAGAATACCCTCCCATAA 57.370 33.333 0.00 0.00 33.76 1.90
2060 2299 8.862091 AGAGAATACCCTCCCATAATATAAGG 57.138 38.462 0.00 0.00 33.76 2.69
2090 2329 8.688747 ACTGTACTAGTACTATGGATACAACC 57.311 38.462 28.56 3.05 45.34 3.77
2091 2330 8.277197 ACTGTACTAGTACTATGGATACAACCA 58.723 37.037 28.56 7.13 45.34 3.67
2092 2331 8.455903 TGTACTAGTACTATGGATACAACCAC 57.544 38.462 28.56 4.35 43.09 4.16
2093 2332 8.054572 TGTACTAGTACTATGGATACAACCACA 58.945 37.037 28.56 6.81 43.09 4.17
2094 2333 9.075678 GTACTAGTACTATGGATACAACCACAT 57.924 37.037 23.17 0.00 40.87 3.21
2105 2344 2.215196 ACAACCACATACAACCACGTC 58.785 47.619 0.00 0.00 0.00 4.34
2138 2377 5.359716 ACTATCGATACAACGGATGTCTC 57.640 43.478 0.00 0.00 42.70 3.36
2173 2412 1.751437 GGGTGCTCTTGGAACATACC 58.249 55.000 0.00 0.00 39.30 2.73
2190 2429 0.966920 ACCAAGGTCATCTTCGACGT 59.033 50.000 0.00 0.00 36.73 4.34
2193 2432 2.080286 AAGGTCATCTTCGACGTTGG 57.920 50.000 2.20 0.00 41.19 3.77
2222 2461 3.757745 TTAGGCGCTTGAGCAATAAAC 57.242 42.857 7.64 0.00 42.21 2.01
2224 2463 0.523335 GGCGCTTGAGCAATAAACGG 60.523 55.000 7.64 0.00 42.21 4.44
2229 2468 4.554723 GCGCTTGAGCAATAAACGGAATAT 60.555 41.667 0.00 0.00 42.21 1.28
2281 2520 3.131400 CCTAGCGAGCTACTTCCTCTTTT 59.869 47.826 0.00 0.00 0.00 2.27
2284 2523 2.933056 GCGAGCTACTTCCTCTTTTGCT 60.933 50.000 0.00 0.00 0.00 3.91
2287 2526 4.929808 CGAGCTACTTCCTCTTTTGCTTAA 59.070 41.667 0.00 0.00 0.00 1.85
2292 2531 6.183360 GCTACTTCCTCTTTTGCTTAAGGATG 60.183 42.308 4.29 0.00 37.74 3.51
2340 2585 9.492730 AAATAAGGGAAACATTATCTGGTGAAT 57.507 29.630 0.00 0.00 45.84 2.57
2365 2612 1.152860 TGGGAGCGTTTTTCCAGCA 60.153 52.632 0.00 0.00 36.40 4.41
2366 2613 0.753479 TGGGAGCGTTTTTCCAGCAA 60.753 50.000 0.00 0.00 36.40 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.138320 CAAAGTCGTGCATCTGAGTGT 58.862 47.619 0.00 0.00 0.00 3.55
89 93 6.214191 TGCAACTCTTAACACCAAATTCAA 57.786 33.333 0.00 0.00 0.00 2.69
97 101 4.202010 ACAACACATGCAACTCTTAACACC 60.202 41.667 0.00 0.00 0.00 4.16
135 139 5.507482 GGACAAGAAAAGAACCAGTAAAGCC 60.507 44.000 0.00 0.00 0.00 4.35
285 290 0.249489 CTATGGAGCCCAGTACACGC 60.249 60.000 0.00 0.00 36.75 5.34
293 298 1.291033 ACTCTACCACTATGGAGCCCA 59.709 52.381 0.84 0.00 40.96 5.36
304 309 1.338200 CCAAGGCTCACACTCTACCAC 60.338 57.143 0.00 0.00 0.00 4.16
331 336 6.035843 CAGTGCATTAAAACACCATGATACC 58.964 40.000 0.00 0.00 37.51 2.73
375 380 3.606595 TGACTTCTCAAGAGCTCATGG 57.393 47.619 18.26 9.60 0.00 3.66
521 528 3.554934 TCTTTGCTACCATGGGCAATAG 58.445 45.455 23.70 21.34 45.82 1.73
701 714 1.189524 TGTGGGGGTACGTTGGAGAG 61.190 60.000 0.00 0.00 0.00 3.20
702 715 0.763604 TTGTGGGGGTACGTTGGAGA 60.764 55.000 0.00 0.00 0.00 3.71
741 754 0.176680 CCATGTCCCTTCCTCACTCG 59.823 60.000 0.00 0.00 0.00 4.18
1113 1130 0.179134 CCGCCTTACCGTTCAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
1134 1154 3.006247 GAGATGGAAGAAACAGGAGCAC 58.994 50.000 0.00 0.00 0.00 4.40
1143 1163 5.233083 TGAGCTTCTTGAGATGGAAGAAA 57.767 39.130 6.85 0.00 40.74 2.52
1181 1201 1.376037 CTTGGCAGGAGGACCGAAC 60.376 63.158 0.00 0.00 41.83 3.95
1212 1232 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
1222 1251 1.762460 GGCGGATCTTGGAGGAGGA 60.762 63.158 0.00 0.00 0.00 3.71
1223 1252 1.414061 ATGGCGGATCTTGGAGGAGG 61.414 60.000 0.00 0.00 0.00 4.30
1224 1253 0.250209 CATGGCGGATCTTGGAGGAG 60.250 60.000 0.00 0.00 0.00 3.69
1225 1254 1.832219 CATGGCGGATCTTGGAGGA 59.168 57.895 0.00 0.00 0.00 3.71
1226 1255 1.895707 GCATGGCGGATCTTGGAGG 60.896 63.158 0.00 0.00 0.00 4.30
1227 1256 0.749091 TTGCATGGCGGATCTTGGAG 60.749 55.000 0.00 0.00 0.00 3.86
1228 1257 0.749091 CTTGCATGGCGGATCTTGGA 60.749 55.000 0.00 0.00 0.00 3.53
1229 1258 1.731700 CTTGCATGGCGGATCTTGG 59.268 57.895 0.00 0.00 0.00 3.61
1230 1259 1.065273 GCTTGCATGGCGGATCTTG 59.935 57.895 1.34 0.00 0.00 3.02
1332 1361 0.323360 GATGCTTGCCCCTGTTACCA 60.323 55.000 0.00 0.00 0.00 3.25
1519 1562 0.882042 GGGCACGATCGATCAGCAAT 60.882 55.000 29.58 9.02 31.48 3.56
1520 1563 1.521457 GGGCACGATCGATCAGCAA 60.521 57.895 29.58 0.00 31.48 3.91
1563 1623 2.223479 CCCGGCATCAACTTAAAATCGG 60.223 50.000 0.00 0.00 35.33 4.18
1590 1650 3.004106 GCTGTGAGTGAATCTTGCAGTTT 59.996 43.478 0.00 0.00 33.78 2.66
1625 1689 1.398390 GGGCGATCTTCACATCACAAC 59.602 52.381 0.00 0.00 0.00 3.32
1631 1695 1.139853 GGAGAAGGGCGATCTTCACAT 59.860 52.381 16.69 1.19 44.01 3.21
1641 1705 1.452108 GGTTCATGGGAGAAGGGCG 60.452 63.158 0.00 0.00 0.00 6.13
1772 1848 3.983344 CCCATTTCGAGCTTCTTGTTTTG 59.017 43.478 0.00 0.00 0.00 2.44
1777 1853 1.470098 CACCCCATTTCGAGCTTCTTG 59.530 52.381 0.00 0.00 0.00 3.02
1814 1890 0.731514 CTGCAAAGCACAGCATTCCG 60.732 55.000 0.00 0.00 40.42 4.30
1845 1921 2.103042 CAACAGCAGTAGAGCCGCC 61.103 63.158 0.00 0.00 34.23 6.13
1923 2001 1.071857 GTGGAGGAAAGGAGACCGTTT 59.928 52.381 0.00 0.00 33.57 3.60
1924 2002 0.685660 GTGGAGGAAAGGAGACCGTT 59.314 55.000 0.00 0.00 0.00 4.44
1976 2057 4.436515 CACCAGTTGTGCGTCTCA 57.563 55.556 0.00 0.00 38.34 3.27
2016 2255 3.895656 CTCTTATATTGTGGGACGGAGGA 59.104 47.826 0.00 0.00 0.00 3.71
2017 2256 3.895656 TCTCTTATATTGTGGGACGGAGG 59.104 47.826 0.00 0.00 0.00 4.30
2018 2257 5.531122 TTCTCTTATATTGTGGGACGGAG 57.469 43.478 0.00 0.00 0.00 4.63
2019 2258 6.014840 GGTATTCTCTTATATTGTGGGACGGA 60.015 42.308 0.00 0.00 0.00 4.69
2020 2259 6.164176 GGTATTCTCTTATATTGTGGGACGG 58.836 44.000 0.00 0.00 0.00 4.79
2021 2260 6.014499 AGGGTATTCTCTTATATTGTGGGACG 60.014 42.308 0.00 0.00 0.00 4.79
2022 2261 7.317722 AGGGTATTCTCTTATATTGTGGGAC 57.682 40.000 0.00 0.00 0.00 4.46
2023 2262 6.500751 GGAGGGTATTCTCTTATATTGTGGGA 59.499 42.308 0.00 0.00 34.39 4.37
2024 2263 6.296489 GGGAGGGTATTCTCTTATATTGTGGG 60.296 46.154 0.00 0.00 34.39 4.61
2025 2264 6.272324 TGGGAGGGTATTCTCTTATATTGTGG 59.728 42.308 0.00 0.00 34.39 4.17
2026 2265 7.316393 TGGGAGGGTATTCTCTTATATTGTG 57.684 40.000 0.00 0.00 34.39 3.33
2027 2266 9.629649 TTATGGGAGGGTATTCTCTTATATTGT 57.370 33.333 0.00 0.00 34.39 2.71
2034 2273 9.285359 CCTTATATTATGGGAGGGTATTCTCTT 57.715 37.037 0.00 0.00 34.39 2.85
2035 2274 7.851968 CCCTTATATTATGGGAGGGTATTCTCT 59.148 40.741 10.96 0.00 43.93 3.10
2036 2275 7.849904 TCCCTTATATTATGGGAGGGTATTCTC 59.150 40.741 15.56 0.00 44.61 2.87
2037 2276 7.739379 TCCCTTATATTATGGGAGGGTATTCT 58.261 38.462 15.56 0.00 44.61 2.40
2046 2285 8.685311 AGTACAGTACTCCCTTATATTATGGGA 58.315 37.037 7.48 7.69 46.56 4.37
2047 2286 8.896722 AGTACAGTACTCCCTTATATTATGGG 57.103 38.462 7.48 0.00 42.88 4.00
2070 2309 9.075678 GTATGTGGTTGTATCCATAGTACTAGT 57.924 37.037 8.85 0.00 39.81 2.57
2112 2351 6.147492 AGACATCCGTTGTATCGATAGTACTC 59.853 42.308 5.09 1.18 39.18 2.59
2130 2369 1.014044 TGCAGCGAAACGAGACATCC 61.014 55.000 0.00 0.00 0.00 3.51
2138 2377 1.511887 CCCGAAATGCAGCGAAACG 60.512 57.895 7.83 0.00 0.00 3.60
2141 2380 2.976840 GCACCCGAAATGCAGCGAA 61.977 57.895 7.83 0.00 42.88 4.70
2190 2429 2.622011 CGCCTAAACAAGCGCCCAA 61.622 57.895 2.29 0.00 46.50 4.12
2222 2461 8.673711 TCCTGAACAAGTGAAAATTATATTCCG 58.326 33.333 0.00 0.00 0.00 4.30
2237 2476 1.694696 GTCCCTCACTCCTGAACAAGT 59.305 52.381 0.00 0.00 0.00 3.16
2264 2503 2.966050 AGCAAAAGAGGAAGTAGCTCG 58.034 47.619 0.00 0.00 0.00 5.03
2281 2520 7.513856 TGTAATAATGCCTACATCCTTAAGCA 58.486 34.615 0.00 0.00 34.62 3.91
2284 2523 9.914834 AACTTGTAATAATGCCTACATCCTTAA 57.085 29.630 0.00 0.00 34.62 1.85
2325 2570 6.118170 CCAGAGAACATTCACCAGATAATGT 58.882 40.000 0.00 0.00 45.75 2.71
2327 2572 5.429762 TCCCAGAGAACATTCACCAGATAAT 59.570 40.000 0.00 0.00 0.00 1.28
2333 2578 1.003580 GCTCCCAGAGAACATTCACCA 59.996 52.381 0.00 0.00 0.00 4.17
2340 2585 2.218603 GAAAAACGCTCCCAGAGAACA 58.781 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.