>input_sequence_82331
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--------------------------------------------------------ATGGGGCTGCAGGACACGGGCAGC
AGCCGGAGGGGCAGCTTCTTCCAGTACCAGAGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGCG
GTGGCTGCCCTCTCTGAAC---GGTAAGGCGGCGTGCTCCTGTTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATCA
GTTCGGTCCTCCTGCCAAGGAAGGTCTCCGACCCCTCCTCCTCCTCCTCC---------AAGATCCGCCATGCAAGCGTG
GCGCACGCCGAGGATGCCTGCCCGAGCATCGTCTTCTTGTCGCAGTGGGGGCTGCCGGTGCTCTCCGGCCCGTCGGTGGC
TGGTAACAGGGGCAAGCATCCCCGTGGGAAGGGCTACTGA----------------------------------------
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>chr5D_1_TraesCS5D01G195200
GGATTAAACTATCCTTCGTTAAATGCATCACATGACAAAACCATAGGCCAGCTGTTTAACACTCAGATGCACGA---CTT
TGGATTCATGATTTGAATTTGGTGTTAAGAGTTGCATGTGTTGTGGTGTCCATGCATTGGCTTTACTGGTTCTTTTCTTG
TCCTTTAGGTGCGATGCAGTCGGACCTGCTTGCTGAAGTTACTGACGGATCATCCAATGTTAGGGAGGTTTGGAAATTCT
CATTCAAGTAGACTAGCATGGCCTCTGTGGTTGTTGTATCAGATAC-AAGCGTGTACTGGGCTCCATAGTGGTAGAGTGT
GAGCCTTGGTTTAGCGGTATCATGGTGTTTTAATGCACTGTTAGTTTCAAGTTGATTGTCCATGAGCTCTTGAGAAGTCA
TACAAGTACTTGAGTCCTATCTCTGAATTAC-GACTCTTAAAACCGGTGTACCCTTTCCTCTGAGATGTGAATTCTCCAT
GATG-CCCGCTTGTACCATCTCACAACTTTGACAAAAGCAGCACTTTCTATTGCCCATGGTAGCAAAGATTCTTGGGAAT
TCCAGTGGCAGACAGAACTGATTGAGTAGCGATAGCAACTGACAAGTCATCAAAAAGAGTAACAAGAAACAAAATTTGTG
CCCCCATACTTTACCTCCTTTGTCCAGATGCCATGATACACTCCAT----GCTTTCCTGGCAACC--AGGAAACTCTCCA
ACGTACCCCCACAAGATAATTTTGGGAGAGGTGCGAGTGAGGAAGGGA---CATGGATGTGAGAGGGTGGCTAGGCCCAT
GTGGCACAAGGAATCAAACATTAGGGCGACCTTTGTCCTCTTGTT-CATGTGTCAATGTTTCTAATTATCGGCGCCGTAC
CACTTTGGTCGGGGTCACTCCATGTGCAAGCTACTGCTGTGTTGTCCGTCGTCAAGATGATCTGCATCTTCCTTCCTTGT
AGAGTCTACTATATCTTGGCCTTGCAGGTTGCAGCCTTTCCCCTTGAGCTGCAATGATGGGGCTGCAGGACACGGGCAGC
AGCCGGAGGGGCAGCTTCTTCCAGTACCAGAGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGCG
GTGGCTGCCCTCTCTGAAC---GGTAAGGCGGCGTGCTCCTGTTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATCA
GTTCGGTCCTCCTGCCAAGGAAGGTCTCCGACC---------CCTCCTCCTCCTCCTCCAAGATCCGCCATGCAAGCGTG
GCGCACGCCGAGGATGCCTGCCCGAGCATCGTCTTCTTGTCGCAGTGGGGGCTGCCGGTGCTCTCCGGCCCGTCGGTGGC
TGGTAACAGGGGCAAGCATCCCCGTGGGAAGGGCTACTGAGAGGCAGC-----AGGCTTCTGCACATTTTTCAGGTGTCG
TCTCTGTTCCTAGCGA-----TATATGCGTGTGTATGATGTGGTATATGGTAG----TATATATCTAGTTGATCCTGTAA
ATCGAATTGTGTTCGTTGCTCTGTGCCGGGATGGATCTGAGAT-----------------TGCTGATCGATCGTGCCCGG
ATCTTGTGCGAAAAAATGTAGGCCGATTTTAAGTTGATGCCGGGCAGAAAAACT----GCAAGATTCACTCACAGCTGTG
CCGTGTGAGTTGTGATGTGAAGATCGCCCTTCTCCCATGAACCACCTTACG-TTCTGAAACGGGGGTTAGATTG------
AGATAGGCAGCGTCTGCAACGCATGAACCTTTGCATGTT-----GCCGTGGAAAACGAACTGATTTTCGTGAAATTCCTT
TTGGCTCCAAAACAAGAAGCTCGAAATGGGGTGAAAAGAATGGCACCAACGGAATGCTGTGCTTTGCAGCTTGCTTCCAC
GGCGGCTCTACTGCTGTTGGCCTAGGAGCGAGAAACGGTGTCCTGATTTGTGCGACCTTG--AGCCGTCAACTAGATGAT
AA---ACGGTCTCCTTTCCTCCACGACACCACACCTCCCCCGTTCTTTTCTCTCGATGAGACGCACAACTGGTGCTCGTG
CT------------------------------------------------------------------------------
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CTTAAAAAGCTACTTCCTCCGTCCCACAATATAAGAGAATACCCTCCCATAATATAAGGGAGTACTGTACTAGTACTATG
GATACAACCACATACAACCACGTCAAAAAAGAGTACTATCGATACAACGGATGTCTCGTTTCGCTGCATTTCGGGTGCTC
TTGGAACATACCAAGGTCATCTTCGACGTTGGGCGCTTGTTTAGGCGCTTGAGCAATAAACGGAATATAATTTTCACTTG
TTCAGGAGTGAGGGACTCCTAGCGAGCTACTTCCTCTTTTGCTTAAGGATGTAGGCATTATTACAAGT------TAATAA
ATAAGGGAAACATTATCTGGTGAATGTTCTCTGGGAGCG--TTTTTCCAGCAAACGCT
>chr5B_1
GGATTAAACTGTCCTTCGTTAAATGCATCACATGACAGAACCATACGCCAGCTGTTTA-CACGCAGATGCACGA---CTT
TGGATTCATGATGTGAATTTTGTGTTAAGAGTTGCATGTGTTGTGGTGTCCATGCATTTGCTTTACTGGTTCTTTTATTG
TCCTTTAGGTACCATGCAATCGGACCTGCTTGCTGAAGTTACTGATGGTTCATCCAATGTTAGGGAGGTTTGGAAATTCT
CATTCAAGTAGACTAGCATGGCCTCTGTGATTGTTGTATCAGATAC-AAACGTGTACCGGGCTCCATATTGGTAGAGTGC
GAGCCTTGGTTTAGCCGTTTCATGGTGTTTTAATGCACTGTTAGTTTCAGGTTGATTGTTCATGAGCTCTTGAGAAGTCA
TACAAGTACTTGAGTCCTATCTCTGAATTAC-GATTCTTAAAACTGGTGTACCCTTTCCTCTGAGATGTGAATTCTCCAT
GATG-CCCGCTTGTACCATCTCACAACTTTGACAAAAGTAGCACTTTTTATGGCCCATGGTAGCAAAGATTCTTGGGAAT
TCCAGTGGCAGACAGAACTGATTGAGTAGCGATAGCAACTGACAAGTCATCAAAAAGAGTAACAAGAAACAAAATCTGTG
CTCCCACACTTTACCTCCTTTGTCCGGATGCCATGATACACACCAT----GCTTTCCTGGCAACC--AGGAAATACTCCA
ACGTACTCCCACAAGATAATTTTGGGAGAGGTGTGAGTGAGGAAGGGACG---TGGATGTGAGAGGGTGGCTAGGCCCAT
GTGGCACAAGGAATCAAACATTAGGGCGACCTTTGTCCTCTTGTT-CATGTGTCAATGTTTCTAATTATCGGCGCCGTAC
CACTTTGGTCGGGGTCACTCCATGTGCAAGCTACTGCTGTGTTGTCCGTCCTCAAGATGATCTGCATCTTCCTTCCTTGT
AGAGTCTACTATATCTTGGCCTTGCAGGTTGCAGCCTTTCCCCTTGAGCTGCAATGATGGGGCTGCAGGACACGGGCAGC
AGCCGGAGGAGCAGCTTCTTCCAGTACCAGAGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGCG
GTGGCTGCCGTCTCTGAAC---GGCAAGGCGGCCTGCTCCTGCTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATCA
CTTCGGTCCTCCTGCCAAGGAAGGTCTCCGAGC---------CCTCCTCC---------AAGATCCGCCATGCAAGCGTG
GCGCACGCCGAGGATGCCTGCCCGAGCATCGTCTTCTTGTCGCAGTGGGGGCTGCCGGTGCTCTCCGGCCCGTCGGTGGG
CGGTAACAGGGGCAAGTACCCCCGTGGGAAGGGCTACTGAGAGGCAGC-----AGGCTTCTGCACATTTTTCAGGTGTCG
TCTCTGTTCCCAACGATATAGTATATGCGTGTGTATGGTGTGGTATATATCTAGGTATATATATCTAGCTGATCCTGTAA
ATCGAGTTGTGTTTGTTGCTCTCTGCCGGGAAGGATCTGAGTCTGAGATCGGGTGTGCCCTGCTGATCGATCGTGCGCAG
ATCCTGTGCGAAAAAATGTAGGTCGATTT-AAGTTGATGTCAGGCAGAAGAACTACAGGCAAGACTCACTCACAGCGGT-
CCGTGTGAATTGTGTTGTGAAGATTGTCCTTGTCCCATGAACCGGTTTACA-TTCTGCAACGGGGATTAGA--------C
AGATAGGCACCGTCTGCAACGCATGAACCTTTGTAAGTTTGTACGCCGTGGGAAACGAACTGATTTTCGTGAAATTCCTT
--GGCTC-CAACAAAGAAGCTCGAAATGT-GTGAAAAGAGTGGCACCAATGGAATGTTGTGCTTCGCAGTTTGCTTACAC
TGCGGCTCTACTGCTGTTGGCCTAGGAGCGAGAAACAGTGTCCTGATTTGTGCGGCCTCTTCAGCCGTCAACTAGATGGT
GG---GCGGTCTCCTTTCCTCCACGACACCACACCTTCCCCGTTCTTTTCTCTCGAGGCGCACACGCTCTTAGGCCTTGT
ACAAAGGGAGGTGCTTCGAAAAATAAACCGAGTTTTTCTGAAGCAGCGATGCCTATTTCTACAGGAGAGACGCTTAGTTA
AGCATCTATCCTGTACAAATAAACACCGGTGCTTAGGAAAGCCTGGTTTATTTCTCTAAGCACCTTGCATCGTACAATGC
CTTAAAAAGC----------------------------------------------------TACTGTGCTAGTACTATG
GATACAACA----------ACGTAAAAAAAAAGTACCATCAATACAACTGATGTCTTGTCTCGCTGCATTTCGGGTGCTC
TTGGAACATACTAAGGCCATCTTCGACGCTGAGCGCTTGTTTAGGCGCTTGAGCAATAAAGGAAATAGAATTTTCCCTTG
TTTAGGAGTGAGGGACTCCTAGTGAGCTACTTCCTCTTTCGCCTAGGGATATAGGCATTATTACAAGTTACTAGTAATAA
ATAAGGGAAGCGTTATCGGGTGAACGTTCTCTGGGAGCGTCTTTTTCCAGCGGACGCT
>chr5A_1
GGATTAAACTATCCTTCGTTAAATGCATCACATGACGAAACCATAGGCCAGCTGTTAA-CACTCAGATGCATGACTTCTT
TGGATTCATGATGTGAATTTTGTGTTAAGAGTTGCATGTGTTGTGGTGTCCATGCATTTGCTT-ACTAGTTCCTTTCTTG
TCCTTTAGGTGCCATGCAGTCGGACCTGCTTGCTGAAGTTACTGACGGATCATCCAATGTTAGGGAGGTTTGGAAATTCT
CATTCAAGTAGACAAGCATGGCCTCTGTGATTGCTGTATCAGATACAAAACGTGTACCGGGCTCCATATTGGTAGAGTGT
GAGCCTTGGTTTAGCCGTATCATGGTGTTTTAATGCACTGTTAGTTCCAAGTTGATTGTTCATGAACTCTTGAGAAGTCA
TACAAGTACTTGAGTCCTATCTCTGAATTACTGACTCTTAAAACCGGTGTACCCTTTCCTCTGAGATGTGAATCCTCCAT
GATGGCCCGCTTGTACCATCTCACAACTTTGACAAAAGCAGCACTTTTTATTGCCCACGGTAGCAAAGATTCTTGGGAAT
TCCAGTGGCAGACAGAGCTGATTGAGTGGCGATAGCAACTGACAAGTCATCAAAAAGAGTAACAAGAAACAAAATTTGTG
CCCCCATACTTTACCTCCTTTGTCCAGACGCCATGATACACACCATGCTCGCTTTCCTGGCAACCAGAGGAAATACTCCA
ACGTACCCCCACAAGATAATTTTGGGAGAGGTGTGGGTGAGGAAGAGGGGGCATGGATGTGAGAGGGTGGCTAGGCCCAT
GTGGCACGAGGAATCAAACATTAGGGCGACCTTTGTCCTCTTGTTTCATGTGTCAATGTTTCTAATTATCGGCGCCGTGC
CACTTTGGTCGGGGTCACTCCATGTGCAAGCTACTGCTCTATTGTCCTCCCTCAAGATGATCTGCATCTTCCTTGCTTGT
AGAGTCTACTATATCTTGGCCTTGCAGGTTGCAGCCTTTCCCCTTGAGCTGCAATGATGGGGCTGCAGGACACGGGCAGC
GGCCGGAGGGGCAGCTTCTTCCAGTACCAGCGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGCG
GTGGCTGCCGTCTCTGACGACTGGTAAGGCGGCCTGCTCCTGCTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATCA
CTTCGGTCCTCCTGCCGAGGAAGGTCTCCGAGC------CCTCCTCCTCC---------AAGATCCGCCATGCAAGCGTG
GCGCACGCTGAGGATGCCTGCCCGAGCATCGTCTTCCTGTCGCAGTGGGGGCTGCCGGTGCTCTCTGGCCCGTCGGTGGC
CGGTAACAGGGGCAAGCACTCCCGTGGGAAGGGCTACTGAGAGGCAGCAGCAGAGGCTTCTGCACATTTTCCAGGTGTCG
TCTCTGTTCCTAGCGAC-----ATATGCGTGTGTATGATGTGGTATATATCTAG--------------TTGATCCTGTAA
ATCGGATTGTGTTCGTTGCTCTGTGCCGGGGTAGA------TCTGGGATCGGGTGTACCCTGCTGATCGATCGTGT----
---CTGTGCGAAAAAATGTAGGTCGATTTTAAGTTGATGCCAGGCATAAG---TACAAGCAAGACTCACTCACAGCTGTG
TC-------------------GATTGCTCTTCTCCCATGAGCCACTCTACGTTTCTGAAACGGGGGTTAGATTGATAGCC
AGATAGGCACCGCCTGCAACGCATGAACCTTTGCATGTT-----GCCGTGGAAAGCGAACTGATTTTCGTGAAATTCCTT
TTGGCTA-AAAAAAAGAAGCTCAAAATGGGGTGAAAAGAATGGCACTAATGGAATGCTGTGCTTTGCGGTTTGCTTCCAC
TGCGGCTCTACTGCTGTTGGCCTAGGAGCGAGAAACGGTGTTCTGATTTATGCGACCTTG--AGCCGTCAACTAGATGAT
GGACGACGGTCTCCTTTACTCCACGACACCACACCTCCCCCGTTCTTTTCCCTC---GAGACGCACAACTGGTGCTCGTG
CT------------------------------------------------------------------------------
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CTTAAAAAGCTACT------------------------------------------------------------------
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>SNPs
----------------------------------------------------------S---------------------
------------S-------S-------------------------------------S---------------------
------------S-------------------------------------------------------------------
-----------------------------S-------------------S-------S----------S-----------
---------------S-------------------------------------------S--------------------
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-----------------------------------------------S--------------------------------
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-----------------------------------------S-------------------------------SS-----
---------------------------------S----------------------------------------------
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--------------------------------------------------S-----------------------------
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---------S-----------------------S--------S-------------------------------------
S------------------------------S------------------SSSSSSSSS---------------------
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S-----------------S-------------------------------------------------------------
------------------------------------------------SSSSS---------------------------
-----------------------------------------SS---------------------------------S-S-
---S------------------S------------------S-------S--------------S---------------
--------S-----S---------S--------------------S----------------------------------
---------S----------------------------------------------------------------------
-------S----S------------------------------------S-------------------S----------
S-------------------------------------------------------------------------------
SS------------------------------------------------------S-----------------------
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--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----------
--------SSSSSSSSSSS----S------S-----S---S-------S-------S--S--------------------
-----------S----S-----------S--S----------------------------S-S----S-------S----
--S-------------------S----------------S--S--S----S-----------------------------
---------S-S-----S------S--------------------------SS-----
>forward_270
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----------GACTAGCATGGCCTCTGTGG--------------------------------------------------
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>reverse_1130
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---------CTCTCTGAACGGTAAGGCGG---------------------------------------------------
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>forward_309
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-------------------------------------------------GCGTGTACTGGGCTCCATAG-----------
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>reverse_1253
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----------------------------------------------------CTCCTCCAAGATCCGCCATG--------
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>forward_931
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-------------------------------TACTGCTGTGTTGTCCGTCG-----------------------------
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>reverse_2002
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-AACGGTCTCCTTTCCTCCAC-----------------------------------------------------------
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