Multiple sequence alignment - TraesCS5D01G190400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G190400 chr5D 100.000 2486 0 0 1 2486 292713336 292715821 0.000000e+00 4591.0
1 TraesCS5D01G190400 chr5B 91.563 1612 88 18 123 1713 333563498 333565082 0.000000e+00 2180.0
2 TraesCS5D01G190400 chr5B 93.935 676 29 6 1786 2452 333565101 333565773 0.000000e+00 1011.0
3 TraesCS5D01G190400 chr5A 95.244 841 30 4 834 1672 385542741 385543573 0.000000e+00 1323.0
4 TraesCS5D01G190400 chr5A 94.337 618 23 6 1786 2392 385543659 385544275 0.000000e+00 937.0
5 TraesCS5D01G190400 chr5A 85.377 677 58 24 3 666 385541937 385542585 0.000000e+00 664.0
6 TraesCS5D01G190400 chr5A 98.571 140 2 0 712 851 385542586 385542725 5.310000e-62 248.0
7 TraesCS5D01G190400 chr7D 100.000 28 0 0 2444 2471 386906960 386906987 4.000000e-03 52.8
8 TraesCS5D01G190400 chr2B 100.000 28 0 0 2448 2475 651616364 651616337 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G190400 chr5D 292713336 292715821 2485 False 4591.0 4591 100.00000 1 2486 1 chr5D.!!$F1 2485
1 TraesCS5D01G190400 chr5B 333563498 333565773 2275 False 1595.5 2180 92.74900 123 2452 2 chr5B.!!$F1 2329
2 TraesCS5D01G190400 chr5A 385541937 385544275 2338 False 793.0 1323 93.38225 3 2392 4 chr5A.!!$F1 2389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1011 0.034574 TGCGCTCTCTCTTCCTCTCT 60.035 55.0 9.73 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 2212 0.035152 ACTCGGCCTGAAATCATGCA 60.035 50.0 11.82 0.0 38.91 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.627834 AGCTATAGAGGGGAATGCAGC 59.372 52.381 3.21 0.00 0.00 5.25
63 64 1.220749 GGGGAATGCAGCTCACGTA 59.779 57.895 0.00 0.00 0.00 3.57
65 66 0.811616 GGGAATGCAGCTCACGTAGG 60.812 60.000 0.00 0.00 0.00 3.18
107 109 2.936032 GGCTCCTCCACCACCCTT 60.936 66.667 0.00 0.00 34.01 3.95
120 122 2.202932 CCCTTCAGGCGACATCCG 60.203 66.667 0.00 0.00 42.21 4.18
142 150 1.237285 GGCAGTGGCAACGATGAACT 61.237 55.000 12.58 0.00 43.71 3.01
153 161 2.555199 ACGATGAACTGAATAGGCTGC 58.445 47.619 0.00 0.00 0.00 5.25
157 165 1.280133 TGAACTGAATAGGCTGCTGCT 59.720 47.619 15.64 4.34 39.59 4.24
241 249 0.842030 TCATGCTCTGTTCCCACCCT 60.842 55.000 0.00 0.00 0.00 4.34
266 274 1.071987 GCTGATGGATCCGATGCCA 59.928 57.895 7.39 0.34 38.78 4.92
346 360 2.183046 GGGAGAGTGCGAGTGAGC 59.817 66.667 0.00 0.00 37.71 4.26
350 364 1.640210 GAGAGTGCGAGTGAGCGAGA 61.640 60.000 0.00 0.00 40.67 4.04
387 401 2.435586 CCCAGCCGCTTCTGACAG 60.436 66.667 0.00 0.00 36.19 3.51
388 402 3.123620 CCAGCCGCTTCTGACAGC 61.124 66.667 0.00 2.91 36.19 4.40
421 435 3.943479 TTAACGCCGCGCCATCACT 62.943 57.895 13.88 0.00 0.00 3.41
427 441 2.616330 CCGCGCCATCACTGTTGTT 61.616 57.895 0.00 0.00 0.00 2.83
432 446 3.040965 CCATCACTGTTGTTGGCCT 57.959 52.632 3.32 0.00 36.10 5.19
475 489 1.263776 CGTGCTCAGAAAGTAGCTCG 58.736 55.000 0.00 4.69 45.45 5.03
476 490 1.401670 CGTGCTCAGAAAGTAGCTCGT 60.402 52.381 9.78 0.00 45.56 4.18
477 491 1.989165 GTGCTCAGAAAGTAGCTCGTG 59.011 52.381 0.00 0.00 39.53 4.35
483 499 5.652744 TCAGAAAGTAGCTCGTGTTTTTC 57.347 39.130 0.00 0.00 0.00 2.29
536 552 2.120232 GCCACGAATCGTAGAGTGATG 58.880 52.381 8.35 0.00 43.63 3.07
577 593 4.142315 GCACAAATGTGGTGATTCTATGCT 60.142 41.667 14.85 0.00 45.72 3.79
585 604 7.759489 TGTGGTGATTCTATGCTTTTTACTT 57.241 32.000 0.00 0.00 0.00 2.24
641 669 1.226802 CATCCTCTCTCACGCACGG 60.227 63.158 0.00 0.00 0.00 4.94
677 705 2.370281 TCTCGCACCTCATCAAACTC 57.630 50.000 0.00 0.00 0.00 3.01
678 706 1.618343 TCTCGCACCTCATCAAACTCA 59.382 47.619 0.00 0.00 0.00 3.41
679 707 1.728971 CTCGCACCTCATCAAACTCAC 59.271 52.381 0.00 0.00 0.00 3.51
680 708 1.344438 TCGCACCTCATCAAACTCACT 59.656 47.619 0.00 0.00 0.00 3.41
688 716 2.104622 TCATCAAACTCACTCACCAGCA 59.895 45.455 0.00 0.00 0.00 4.41
757 785 4.487948 CGCATCATTGGTCACATTTTCTT 58.512 39.130 0.00 0.00 0.00 2.52
950 1011 0.034574 TGCGCTCTCTCTTCCTCTCT 60.035 55.000 9.73 0.00 0.00 3.10
951 1012 0.663153 GCGCTCTCTCTTCCTCTCTC 59.337 60.000 0.00 0.00 0.00 3.20
952 1013 0.937304 CGCTCTCTCTTCCTCTCTCG 59.063 60.000 0.00 0.00 0.00 4.04
953 1014 1.308998 GCTCTCTCTTCCTCTCTCGG 58.691 60.000 0.00 0.00 0.00 4.63
956 1017 1.210967 TCTCTCTTCCTCTCTCGGTCC 59.789 57.143 0.00 0.00 0.00 4.46
963 1024 1.636519 TCCTCTCTCGGTCCTTCTCTT 59.363 52.381 0.00 0.00 0.00 2.85
972 1033 1.403514 GGTCCTTCTCTTGCAGACTCG 60.404 57.143 0.77 0.00 0.00 4.18
1024 1087 2.959030 CCTAGATCCTTCGTGATCACCA 59.041 50.000 20.03 4.37 42.95 4.17
1025 1088 3.576118 CCTAGATCCTTCGTGATCACCAT 59.424 47.826 20.03 4.65 42.95 3.55
1026 1089 3.742433 AGATCCTTCGTGATCACCATC 57.258 47.619 20.03 12.64 42.95 3.51
1027 1090 3.303938 AGATCCTTCGTGATCACCATCT 58.696 45.455 20.03 14.41 42.95 2.90
1028 1091 3.708631 AGATCCTTCGTGATCACCATCTT 59.291 43.478 20.03 1.12 42.95 2.40
1029 1092 3.526931 TCCTTCGTGATCACCATCTTC 57.473 47.619 20.03 0.00 0.00 2.87
1045 1108 3.884581 TTCGTCTTCGTCGCCGTGG 62.885 63.158 0.00 0.00 38.33 4.94
1049 1112 2.805353 CTTCGTCGCCGTGGTCAG 60.805 66.667 0.00 0.00 35.01 3.51
1185 1248 2.627771 TGGAACAGGAACAGGTGGT 58.372 52.632 0.00 0.00 0.00 4.16
1387 1450 3.445687 CGATCACGGGGTCGACCA 61.446 66.667 34.40 15.51 42.91 4.02
1499 1562 2.260481 GCCGTAGAGTACTTTGTCTGC 58.740 52.381 0.00 0.00 0.00 4.26
1500 1563 2.877335 CCGTAGAGTACTTTGTCTGCC 58.123 52.381 0.00 0.00 0.00 4.85
1713 1805 8.661352 TTGTATACATGGATGTCACATAGTTG 57.339 34.615 6.36 0.00 41.97 3.16
1714 1806 6.705825 TGTATACATGGATGTCACATAGTTGC 59.294 38.462 0.00 0.00 41.97 4.17
1715 1807 4.226427 ACATGGATGTCACATAGTTGCT 57.774 40.909 0.00 0.00 35.87 3.91
1716 1808 4.194640 ACATGGATGTCACATAGTTGCTC 58.805 43.478 0.00 0.00 35.87 4.26
1717 1809 3.266510 TGGATGTCACATAGTTGCTCC 57.733 47.619 0.00 0.00 0.00 4.70
1718 1810 2.092968 TGGATGTCACATAGTTGCTCCC 60.093 50.000 0.00 0.00 0.00 4.30
1719 1811 2.205074 GATGTCACATAGTTGCTCCCG 58.795 52.381 0.00 0.00 0.00 5.14
1720 1812 0.391130 TGTCACATAGTTGCTCCCGC 60.391 55.000 0.00 0.00 0.00 6.13
1743 1835 7.253783 CCGCACTTTGATGCTTATATATAGTCG 60.254 40.741 0.00 0.00 43.80 4.18
1744 1836 7.484959 CGCACTTTGATGCTTATATATAGTCGA 59.515 37.037 0.00 0.00 43.80 4.20
1745 1837 8.802856 GCACTTTGATGCTTATATATAGTCGAG 58.197 37.037 0.00 0.00 42.62 4.04
1750 1842 9.634021 TTGATGCTTATATATAGTCGAGATCCT 57.366 33.333 0.00 0.00 0.00 3.24
1751 1843 9.634021 TGATGCTTATATATAGTCGAGATCCTT 57.366 33.333 0.00 0.00 0.00 3.36
1780 1872 7.391148 AGTTTGAACTTTGAACACATAGTGT 57.609 32.000 0.00 0.00 41.90 3.55
1781 1873 7.250569 AGTTTGAACTTTGAACACATAGTGTG 58.749 34.615 8.44 8.44 44.65 3.82
1856 1949 4.816925 GCTTTCTTCACTGTACAGTTTCCT 59.183 41.667 25.89 0.94 40.20 3.36
2012 2105 1.000233 CAACAGCAACGCATCAGCAC 61.000 55.000 0.00 0.00 42.27 4.40
2037 2130 1.068921 CGGTTTTGGGGCCACAAAG 59.931 57.895 30.88 17.59 40.97 2.77
2108 2202 6.072112 TCAATTTTCTCAAGAGGTTTTCGG 57.928 37.500 0.00 0.00 0.00 4.30
2118 2212 1.304962 GGTTTTCGGGCCCAATCCT 60.305 57.895 24.92 0.00 0.00 3.24
2123 2217 3.221389 CGGGCCCAATCCTGCATG 61.221 66.667 24.92 0.00 0.00 4.06
2130 2224 2.223971 GCCCAATCCTGCATGATTTCAG 60.224 50.000 13.80 7.51 32.71 3.02
2161 2255 0.108567 TGCTGCTACACGCCGATAAA 60.109 50.000 0.00 0.00 38.05 1.40
2179 2273 2.849880 AATTGTTGATTGCGATCGGG 57.150 45.000 18.30 0.00 34.91 5.14
2438 2548 9.921637 CTACTTATCCCTCAGAAAATCACTATC 57.078 37.037 0.00 0.00 0.00 2.08
2452 2563 8.738645 AAAATCACTATCCCTCTGTTTCATAC 57.261 34.615 0.00 0.00 0.00 2.39
2453 2564 7.682787 AATCACTATCCCTCTGTTTCATACT 57.317 36.000 0.00 0.00 0.00 2.12
2454 2565 6.716934 TCACTATCCCTCTGTTTCATACTC 57.283 41.667 0.00 0.00 0.00 2.59
2455 2566 5.598830 TCACTATCCCTCTGTTTCATACTCC 59.401 44.000 0.00 0.00 0.00 3.85
2456 2567 4.902448 ACTATCCCTCTGTTTCATACTCCC 59.098 45.833 0.00 0.00 0.00 4.30
2457 2568 3.491766 TCCCTCTGTTTCATACTCCCT 57.508 47.619 0.00 0.00 0.00 4.20
2458 2569 3.375699 TCCCTCTGTTTCATACTCCCTC 58.624 50.000 0.00 0.00 0.00 4.30
2459 2570 2.436173 CCCTCTGTTTCATACTCCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
2460 2571 2.101582 CCTCTGTTTCATACTCCCTCCG 59.898 54.545 0.00 0.00 0.00 4.63
2461 2572 2.761208 CTCTGTTTCATACTCCCTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
2462 2573 3.170717 TCTGTTTCATACTCCCTCCGTT 58.829 45.455 0.00 0.00 0.00 4.44
2463 2574 3.581332 TCTGTTTCATACTCCCTCCGTTT 59.419 43.478 0.00 0.00 0.00 3.60
2464 2575 3.933332 CTGTTTCATACTCCCTCCGTTTC 59.067 47.826 0.00 0.00 0.00 2.78
2465 2576 3.325425 TGTTTCATACTCCCTCCGTTTCA 59.675 43.478 0.00 0.00 0.00 2.69
2466 2577 4.202377 TGTTTCATACTCCCTCCGTTTCAA 60.202 41.667 0.00 0.00 0.00 2.69
2467 2578 4.627284 TTCATACTCCCTCCGTTTCAAA 57.373 40.909 0.00 0.00 0.00 2.69
2468 2579 4.627284 TCATACTCCCTCCGTTTCAAAA 57.373 40.909 0.00 0.00 0.00 2.44
2469 2580 5.174037 TCATACTCCCTCCGTTTCAAAAT 57.826 39.130 0.00 0.00 0.00 1.82
2470 2581 6.302535 TCATACTCCCTCCGTTTCAAAATA 57.697 37.500 0.00 0.00 0.00 1.40
2471 2582 6.713276 TCATACTCCCTCCGTTTCAAAATAA 58.287 36.000 0.00 0.00 0.00 1.40
2472 2583 7.169591 TCATACTCCCTCCGTTTCAAAATAAA 58.830 34.615 0.00 0.00 0.00 1.40
2473 2584 7.832187 TCATACTCCCTCCGTTTCAAAATAAAT 59.168 33.333 0.00 0.00 0.00 1.40
2474 2585 6.267496 ACTCCCTCCGTTTCAAAATAAATG 57.733 37.500 0.00 0.00 0.00 2.32
2475 2586 5.773176 ACTCCCTCCGTTTCAAAATAAATGT 59.227 36.000 0.00 0.00 0.00 2.71
2476 2587 6.266786 ACTCCCTCCGTTTCAAAATAAATGTT 59.733 34.615 0.00 0.00 0.00 2.71
2477 2588 7.056844 TCCCTCCGTTTCAAAATAAATGTTT 57.943 32.000 0.00 0.00 0.00 2.83
2478 2589 8.179509 TCCCTCCGTTTCAAAATAAATGTTTA 57.820 30.769 0.00 0.00 0.00 2.01
2479 2590 8.639761 TCCCTCCGTTTCAAAATAAATGTTTAA 58.360 29.630 0.00 0.00 0.00 1.52
2480 2591 8.921670 CCCTCCGTTTCAAAATAAATGTTTAAG 58.078 33.333 0.00 0.00 0.00 1.85
2481 2592 9.471084 CCTCCGTTTCAAAATAAATGTTTAAGT 57.529 29.630 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.359653 CCCTCTCTTTATATCCATTTCATTGTT 57.640 33.333 0.00 0.00 0.00 2.83
7 8 7.946776 CCCCTCTCTTTATATCCATTTCATTGT 59.053 37.037 0.00 0.00 0.00 2.71
74 75 1.005867 GCCACCCACTGCAAATGTG 60.006 57.895 0.00 0.00 35.39 3.21
75 76 1.152483 AGCCACCCACTGCAAATGT 60.152 52.632 0.00 0.00 0.00 2.71
78 79 2.203480 GGAGCCACCCACTGCAAA 60.203 61.111 0.00 0.00 0.00 3.68
82 84 2.930019 TGGAGGAGCCACCCACTG 60.930 66.667 0.38 0.00 43.33 3.66
104 106 1.079127 AACGGATGTCGCCTGAAGG 60.079 57.895 0.00 0.00 43.89 3.46
107 109 2.264480 CCAACGGATGTCGCCTGA 59.736 61.111 0.00 0.00 43.89 3.86
120 122 1.081242 CATCGTTGCCACTGCCAAC 60.081 57.895 0.00 0.00 36.33 3.77
142 150 4.230603 GCAGCAGCAGCCTATTCA 57.769 55.556 0.00 0.00 43.56 2.57
157 165 1.910722 GAGGAGGAGGATTGCTGCA 59.089 57.895 0.00 0.00 35.52 4.41
296 304 2.825223 TCTCCCTCATCTCTCTTGCAA 58.175 47.619 0.00 0.00 0.00 4.08
300 308 3.498481 CCTCGATCTCCCTCATCTCTCTT 60.498 52.174 0.00 0.00 0.00 2.85
350 364 1.517257 CGGAATGAACTCGAGCGCT 60.517 57.895 11.27 11.27 0.00 5.92
358 372 1.299976 GGCTGGGTCGGAATGAACT 59.700 57.895 0.00 0.00 33.55 3.01
390 404 1.361793 GCGTTAATGGCCGTTGACTA 58.638 50.000 25.19 2.54 0.00 2.59
400 414 3.521308 GATGGCGCGGCGTTAATGG 62.521 63.158 29.00 0.00 0.00 3.16
402 416 2.512745 TGATGGCGCGGCGTTAAT 60.513 55.556 29.00 16.10 0.00 1.40
416 430 1.421268 TCTCAGGCCAACAACAGTGAT 59.579 47.619 5.01 0.00 0.00 3.06
421 435 1.059584 TCCCTCTCAGGCCAACAACA 61.060 55.000 5.01 0.00 32.73 3.33
423 437 0.620556 GATCCCTCTCAGGCCAACAA 59.379 55.000 5.01 0.00 32.73 2.83
427 441 1.274703 GGTTGATCCCTCTCAGGCCA 61.275 60.000 5.01 0.00 32.73 5.36
432 446 0.895530 GACGTGGTTGATCCCTCTCA 59.104 55.000 0.00 0.00 34.77 3.27
475 489 6.626199 ATTTTTGACAGTGACGAAAAACAC 57.374 33.333 19.85 0.00 35.28 3.32
476 490 6.032985 CGAATTTTTGACAGTGACGAAAAACA 59.967 34.615 19.85 3.54 35.28 2.83
477 491 6.391709 CGAATTTTTGACAGTGACGAAAAAC 58.608 36.000 19.85 16.04 35.28 2.43
483 499 3.288242 CACCGAATTTTTGACAGTGACG 58.712 45.455 0.00 0.00 0.00 4.35
585 604 9.162764 GCCAAGAGAGTTTACATAGAAACATTA 57.837 33.333 2.23 0.00 41.00 1.90
641 669 2.296471 CGAGATAGGTATGACCCCACAC 59.704 54.545 0.00 0.00 39.75 3.82
677 705 3.054503 GCTGCCTGCTGGTGAGTG 61.055 66.667 11.69 0.00 38.95 3.51
678 706 3.548306 CTGCTGCCTGCTGGTGAGT 62.548 63.158 11.69 0.00 43.37 3.41
679 707 2.746671 CTGCTGCCTGCTGGTGAG 60.747 66.667 11.69 8.70 43.37 3.51
757 785 0.816825 ATCTACCGTAAGCGCGAGGA 60.817 55.000 12.10 0.00 36.67 3.71
950 1011 3.051617 TCTGCAAGAGAAGGACCGA 57.948 52.632 0.00 0.00 38.67 4.69
972 1033 0.669077 ACGTGTGTGTCTGGACTCTC 59.331 55.000 0.00 1.04 0.00 3.20
1045 1108 3.503363 GGTGGCGAGCATGCTGAC 61.503 66.667 28.27 19.72 34.52 3.51
1110 1173 3.906980 CCTCCTGAGGTTGGTGGT 58.093 61.111 4.97 0.00 43.61 4.16
1173 1236 3.133365 GCCACCACCACCTGTTCCT 62.133 63.158 0.00 0.00 0.00 3.36
1499 1562 3.283751 TCAACACACCTTGGTTAACAGG 58.716 45.455 8.10 9.09 0.00 4.00
1500 1563 5.514274 AATCAACACACCTTGGTTAACAG 57.486 39.130 8.10 0.00 0.00 3.16
1690 1782 6.931281 AGCAACTATGTGACATCCATGTATAC 59.069 38.462 0.00 0.00 41.95 1.47
1719 1811 8.689251 TCGACTATATATAAGCATCAAAGTGC 57.311 34.615 0.00 0.00 45.38 4.40
1754 1846 9.120538 ACACTATGTGTTCAAAGTTCAAACTAT 57.879 29.630 0.00 0.00 45.08 2.12
1755 1847 8.394877 CACACTATGTGTTCAAAGTTCAAACTA 58.605 33.333 0.12 0.00 45.08 2.24
1756 1848 7.250569 CACACTATGTGTTCAAAGTTCAAACT 58.749 34.615 0.12 0.00 45.08 2.66
1757 1849 7.436536 CACACTATGTGTTCAAAGTTCAAAC 57.563 36.000 0.12 0.00 45.08 2.93
1773 1865 8.612619 ACAGACTTTAACAGAAAACACACTATG 58.387 33.333 0.00 0.00 0.00 2.23
1774 1866 8.732746 ACAGACTTTAACAGAAAACACACTAT 57.267 30.769 0.00 0.00 0.00 2.12
1775 1867 9.656040 TTACAGACTTTAACAGAAAACACACTA 57.344 29.630 0.00 0.00 0.00 2.74
1776 1868 8.556213 TTACAGACTTTAACAGAAAACACACT 57.444 30.769 0.00 0.00 0.00 3.55
1777 1869 9.783256 AATTACAGACTTTAACAGAAAACACAC 57.217 29.630 0.00 0.00 0.00 3.82
1856 1949 2.427453 GCCTTTCTGTATCCGTCAGAGA 59.573 50.000 0.00 0.00 41.87 3.10
2012 2105 0.821517 GGCCCCAAAACCGATTTAGG 59.178 55.000 0.00 0.00 37.30 2.69
2080 2173 3.181429 ACCTCTTGAGAAAATTGAGCCCA 60.181 43.478 0.00 0.00 0.00 5.36
2108 2202 1.069668 GAAATCATGCAGGATTGGGCC 59.930 52.381 25.77 12.43 37.55 5.80
2118 2212 0.035152 ACTCGGCCTGAAATCATGCA 60.035 50.000 11.82 0.00 38.91 3.96
2123 2217 0.107945 AGCTCACTCGGCCTGAAATC 60.108 55.000 0.00 0.00 0.00 2.17
2161 2255 1.401552 CACCCGATCGCAATCAACAAT 59.598 47.619 10.32 0.00 31.76 2.71
2179 2273 9.559958 CAATAATTTGTCTCACTGATTTACCAC 57.440 33.333 0.00 0.00 0.00 4.16
2354 2464 2.364243 CGTCACTATACGTGTCTCCG 57.636 55.000 0.00 0.00 44.16 4.63
2438 2548 2.436173 GGAGGGAGTATGAAACAGAGGG 59.564 54.545 0.00 0.00 0.00 4.30
2452 2563 6.267496 ACATTTATTTTGAAACGGAGGGAG 57.733 37.500 0.00 0.00 0.00 4.30
2453 2564 6.658188 AACATTTATTTTGAAACGGAGGGA 57.342 33.333 0.00 0.00 0.00 4.20
2454 2565 8.819643 TTAAACATTTATTTTGAAACGGAGGG 57.180 30.769 0.00 0.00 0.00 4.30
2455 2566 9.471084 ACTTAAACATTTATTTTGAAACGGAGG 57.529 29.630 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.