>input_sequence_78699
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----------------------ATGCCTAGATCCTTCGTGATCACCATCTTCGTCTTCGTCGCCGTGGTCAGCATGCTCG
CCACCATGGCGGTGGCGGACACGCCGGCCGACTGCCCGTACCCGTGCCTCCCACCACCAACCTCAGGAGGCGTCATCAAC
AGCTACCCGCCACCGCCACCAGCAGGGACTGGAACAGGAACAGGTGGTGGTGGCGGCGACGGCTTCAGCGGCAGCTACCC
GCCACCTCCGCCAGGGGGCTTCCAGCTGACCCCGCCAGGGGTCATGCCGGGGTTCCTCGCGCCGCCGTTCAGCGCCGTCC
CGGCCGGGCCGGCTCCTCCGCCGCCGAACCCTGTCCTGCCGTGGTTCCCGTGGTACTACCAGCACGACAACCCGATCACG
GGGTCGACCACGTCGGCGTCCTCGCCAACGGCGTCGCACCGGAGGACGACGTGCATGGTCACCCTGCTGCTCCAACTGTG
TTTAGCGATTCTTCTTCGGGCGCCGTAG----------------------------------------------------
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>chr5D_1_TraesCS5D01G190400
ATTTACAACAATGAAATGGATATAAAGAGAGGGGAGAGCTATAGAGGGGAATGCAGCTCACGTAGGGGGGGGGGCACAT-
TTGCAGTGGGTGGCTCCTCCACCACCCTTCAGGCGACATCCGT------TGGCAGTGGCAACGATGAACTGAATAGGCTG
CTGCTGCAGCAATCCTCCTCCTCGCCGCGGGTCCCCCCTGCCACACCGCCATCCGCCCCCATCTGCGCTTCATGCTCTGT
TCCCACCCTGCCATCGCTGATGGATCCGATGCCACCTTCGGCAGATCCCGCCGCCGCCATGCCTTGCAAGAGAGATGAGG
GAGATCGAGGTGGGAGGGGAGAGTGCGAG------TGAGCGAGAGCGCTCGAGTTCATTCCGACCCAGCCGCTTCTGACA
GCGTAGTCAACGGCCATTAACGCCGCGCCATCACTGTTGTTGGCCTGAGAGGGATCAACCACGTCAAAACGTGCTCAGAA
AGTAGCTCGTG--TTTTTCGTCACTGTCAAAAATTCGGTGCAGTTCAAAATGCCACGAATCGTAGAGTGATGGGTTTTAG
CTAATCATAGCACAAATGTGGTGATTCTATGCTTTT---TACTT---------AATGTTTCTATGTAAACTCTCTTGGCG
GTAAAACGAACATCCTCTCTCACGCACGGTGTGGGGTCATACCTATCTCGCACCTCATCAAACTCACTCACCAGCAGGCA
GCAGCCCGTTTAGCCAGAGCCATCTGGGTTCAACCACTGCGCCGCATCATTGGTCACATTTTCTTCCTCGCGCTTACGGT
AGATCCCCCGTAGCAAGTGAATGATTGCTGTTCGTCGGACACACCAGCAGCTCGTTTAGT--------------------
-------------AGTAGTATCAGACTATCAGGTGTCCCTGTAAACCAAAACCCCAAAAGGGCCATCTCGGTGTGACCAG
AGCGCCGCACCAACTAGTATCAAATATTCAGTGCGCTCTCTCTTCCTCTCTCGGTCCTTCTCTTGCAGACTCGAGAGTCC
AGAC--ACACACGTACGCAACCATGCCTAGATCCTTCGTGATCACCATCTTCGTCTTCGTCGCCGTGGTCAGCATGCTCG
CCACCATGGCGGTGGCGGACACGCCGGCCGACTGCCCGTACCCGTGCCTCCCACCACCAACCTCAGGAGGCGTCATCAAC
AGCTACCCGCCACCGCCACCAGCAGGGACTGGAACAGGAACAGGTGGTGGTGGCGGCGACGGCTTCAGCGGCAGCTACCC
GCCACCTCCGCCAGGGGGCTTCCAGCTGACCCCGCCAGGGGTCATGCCGGGGTTCCTCGCGCCGCCGTTCAGCGCCGTCC
CGGCCGGGCCGGCTCCTCCGCCGCCGAACCCTGTCCTGCCGTGGTTCCCGTGGTACTACCAGCACGACAACCCGATCACG
GGGTCGACCACGTCGGCGTCCTCGCCAACGGCGTCGCACCGGAGGACGACGTGCATGGTCACCCTGCTGCTCCAACTGTG
TTTAGCGATTCTTCTTCGGGCGCCGTAGAGTACTTTGTCTGCCTGTTAACCAAGGTGTGTTGATTAGTTGCTACGAAGTG
TTTGTTCTCGTTAATTGCAATGTTGTTTTGACTTTTGAGTTTTTGTAGCTATAAGCTCGTAGAGAAGGTTACTGTTACTG
TTCTTACTCATAGATAATACACTGTTGTCAAGCATATAGACTACAGAGTACGTA--------------------------
---ATTTTGAAGGTAATTATTGTATACATGGATGTCACATAGTTGCTCCCGCACTTTGATGCTTATATATAGTCGAGATC
CTTATATAGTTTGAACTTTGAACACATAGTGTGTTTTCTGTT-AAAGTCTGTAATTTTCTCAAGCAACCGTGCGGCGCAT
TTCCTGCTTTCTTCACTGTACAGTTTCCTCTCTGACGGATACAGAAAGGCGCTTTCTCTTTGCCCTCACCATTCAGCAAG
CCATCGTGGGCAGGCTAGCGAGGTTTCGTGCCAGCCTTTATCGATCGATTGGTTTGTTGAGATGTCCAAATCTGTACATT
CAACTCAACAGCAACGCATCAGCACCTAAATCGGTTTTGGGGCCACAAAGGCGAGACATGCTGCGCGCGGTGCGCTTGCA
CGTTCCCTTTTTTGGGCTCAATTTTCTC-AAGAGGTTTTCGGGCCCAATCCTGCATGATTTCAGGCCGAGTGAGCTGCTG
CTACACGCCGATAAATTGTTGATTGCGATCGGGTGGTAAATCAGTGAGACAAATTATTGGG----TTGACGTACGTCATG
GCGTAGAAGATTGAGAACAACGTCGGACACGTTGCCCTTCTGGATGCTGCTTGTTACGT----CAGTAGTGCAAGCTGCG
CTCCACCGTTCCTACCTGAAG-------GATCATGCA-GTACAGCCAATCGTGACCACGGTTTCGGAGACACGTATAGTG
ACGTTCGGCCTGCTTGTCTTTGGCTTCTCTCGGATTTGCTCCTACTTATCCCTCAGAAAATCACTATC-CCTCTGTTTCA
TACTCCCTCCGTTTCAAAATAAATGTTTAAGTTTAA
>chr5A_3
TTGCAG--CAATGAAATGGATATAAAGAGAGGGGAGAGCTATAGAGGGGAATGCAGTTCACGTGGTGGGGGGGGGGCACA
TTGGAGTGGGTGGCTCCTCCACCACACTGCAGGCGACATCCATTGATGCTGGCAGTGGCAGCGATGAATGGAATAGGTTG
TTGCCGCAGCAATCTTCCTCCTCGCCGCGTGTCCACCCCGCAACACCGCCATCCGCCCCCATCTGTGCTTCATGATCTGT
CCCCACCCCGCCATCGCCGATGGATCTGATGCCGCCTTCGATAGATCCCGCCGTCGCCATGCCCTGCGAGAGAAATGAGG
GAGATCGAGGTGGGAGGGGAGAGTGCGAG------TGAGAGAGCACGCTCGGGTTCATTCCGACCCAGCCGCTTCTGACA
AAGCAGTCAACGA----------CGTGTCGTCGCCGATGTCGGCCCGAGAGGGATCAACCACGTCAAAACGTGCTTAGAA
AGTAGCTCAGTGTTTTTTTGTCACTGTCAAAAATTCGATGCAGTTC---------------GTAAAGTGATAGGTTTTAG
CTAATCATAGCACAAATGTGGTGATTGTGTGCATTTTGCTACTC---------AATGTTTGTATGTAAACTCTCTTGGCG
CTAAAACGTGCATC--CTCTCCCGCACGCTGTGGGGTCATACCTATCTCGCAC---------------------------
------------------GCCATCTGGGTTCAACCACTGCGCCGCATCATTGGTCACATTTTCTCCCTCGCGCTTACGGT
AGATCCCCCGTAGCAAGTGAATGATTGCTGTTCGTCGGACACACCAGCAGCTCGTTTAGTAGTACTATCAGACTATCATC
GCTCAAAAAATAAAGTAGTATCAGACTATCAGGTGTCCCTGTAAACCAAAACCCCAAAAGGGCCATCTCGGTGTGACCAG
AGCGCCGCACCAACCAGTATCAAATATTCAGTGCGCTCTCTCTTCCTCTCGA--TCTTTCTCTCGCAGACTCCAGAGTCC
ACACACACACACGTACGCAACCATGCCTAGATCCTTCGTGATCACCC------TCTTCGTCGCCGTGATCACCATGCTCG
CCGCCATGGCGGTGGCGGACACGCCGGCCGACTGCCCATACCCGTGCCTCCCGCCACCAACCTCAGGAGGCGTCATCAAC
AGCTACCCGCCACCGCCACCAGCAGGGACTGGAACGGGAACAGGTGGCGGTGCCGGCGACGGCTTCGGCGGCAGCTACCC
GCCACCTCCGGCAGGGGGCTTCCAGCTGACCCCGCCCGGGGTCATGCCGGGGTTCCTCGCGCCGCCGTTCAGCGCCGTCC
AGGCCGGGCCGGCTCCTCCGCCGCCGAACCCGGTCCTGCCGTGGTTCCCGTGGTACTACCAGCACGACAACCCGATCACG
GGGTCGACCGCGTCGGCGTCCTCGCCACCGGCGGTGCACCGGAGGACAACGTGCATGGTCACCCTGCTGCTCCAACTGTG
TTTAGCGATTCTTCTTCGGGCGCCGTAGAGTACCTTGTCTGTTTGTTAAGCAAGGTGTGTTGATTAGTTGCTACGAAGTG
TTTGCTCTCGTTAATTGCAATGTTGTTTTGACTTTTGAGTTTTTGTAGCTATAAGCTCGTAGAGAAGGCTACTGTTACTG
TTCTTACTCATAGATAATACACTGTTGTCAAGCATATAGACTACAGAGTACGTACTCCCTTATATTTTGGGACAGACGGA
GTAATTTTGAAGGCTACCGTT-------------------------------ACTTTAATGCTTATATATAGTC------
-----------TGAACTTTGAACAGTG---------TCTGTTCAAAGTCTGTAATTTTCTGAAGCGAGCGTGCGGCGCAT
TTCCTGCTTTCTTCACTGTACAGTTTCCCCTCTGAGGGATACAGAAAGGCGCTTTCTCTTTGCCCTCACCATTCAGCAAG
CCATCGTGGGCAGGCTAGCGAGGTTTCGTGCCAGCCTTTATCAATCGATTGGTTTGTTGAGACGTCCAAATCTGTACATT
CAACTCAACAGCAACGCATCAGCAGCTAAATCGGTTTTGGGGCCACAAAACCGAGACATGCTGCGCGGGGTGCGCTTGCA
CGTCCCCTTTTTGGGGCTCAATTTTCTCTAAGAGGTTTTCGAGCCCAATCCCGCATTATTTCAAGCCGAGTGAGCTGCTG
CTACACGCCGATAA-TTGTTGATCGCGATCGGCTGGTAAATCAGTGAGAGAAATTATTGGGTTGATTGACGTACGTCATG
GCGTAGAGGATTGAGAACAACGTCGGACACGTTGCCCTTCTGGATGCTGCTTGTTACGTACGTCAGTAGTGCAAGCTGCG
CTCCACCGTTCCTACCTGAAG-------GATCATGCATGTACAGCCAATCGTGACCACGGTTTTGGAGACATGTATAGTG
ACGTTCGGCCTGCTTGTCTTT-----------------------------------------------------------
------------------------------------
>chr5B_123
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-------------------------------------------------TGGCAGTGGCAATGATGAACGGAATAGGCTG
TTGTCGCAGCAATCGGCCTCCTCGCCGCGGGTGCCCCCTGCCACACCGCAATCTGCCCCCAGTCGCGCTTCATGCTCTGT
TCCCACCCCGCCATCGTTGATGGATCTGACGCCGCCTTCGACAAATCCCGCCGCCGCCATGCCCTGCT-GAGAGATGAGG
GAGGTCGAGGTGGGAAGGGAGAGGGCGAGTGACAGTGAGAGAGCGCGCTCGGGTTCGTTCCGACCTAGCCGCTTCTGACA
AAGCAGTCAACGGTCGTTAACGCCGCACCGTCACAGATGTCG------GAGGGATCAACCACGTCAAAACGTGCTCAGAA
AGTAGCTCAGTGTTTTTTTGTCACTGTCAAAAATTTGGTGCAGTTCAAAATGCCACGAATCGTAGAGTGATAGGTTTTAC
CTAATCATAGCACAAATGTGGTGATTCTGTGCATTTTGCTACTCTTTTTACTAAATGTTTCTATGTAAACTCTCTTGGCG
GTAAAACGAACATCCTCTCTCACGCACGCTGTGGGGTCAAACCTATCTCGCACCTCATCAAACT----CACCAGCTGGCA
GCAGCCCGTTTAGCCAGAGCCATCTGGGCTCAACCACTGCGCCGCACCATTGGTCACATTTTCTCCCTCGCGCTTACGGT
AGATCCCCCGTAGCAAGTGAATGATTGCTGTTCGTCCGACACACCAGCAGCTCGTTTATT--------------------
-------------ATTAGTATGAGACTATCAGGTGCCCCTGTAAACCAAAACCCCCAAAGGGCCATCTCGGTGTGACCAG
AGCGCCACACCAACTAGTATCAAATATTCAGTGCGCTCTCTCTTTCTCTCGA--TCTTTCTGTCGCAAACTCCAGAGTCC
AGAC--ACACACGTACGCAACCATGCCTAGAACCTTCGTGATCACC------GTCTTCGTCGCCGTGATCACCATGCTCG
CCACCATGGCGGTGGCGGACACGCCGGCCGACTGCCCGTACCCGTGCCTCCCGCCACCAACCTCAGGAGGCGTCATCAAC
AGCTACCCGCCACCGCCACCAGCAGGAACGGGAACCGGAACA------GGTGGCGGCGACGGCTTCGGCGGCAGCTACCC
GCCACCTCCGCCAGGGAGCTTCCAGCTGACCCCGCCTGGGGTCATGCCGGGGTTCCTCGCGCCACCGTTCAGCGCCGTCC
CGGCCGGGCCGGCTCCTCCGCCGCCGAACCCGGTCCTGCCGTGGTTCCCGTGGTACTACCAGCACGACAACCCGATCACG
GGGTCGACCGCGTCGGCGTCCTCGCCACCGGCGGTGCACCGTGGGACGACGTGCATGGTGGCCCTGCTGCTCCAACTGTG
TTTAGCGATTCTTCTTCGGGCGCCGTAGAGTACTTTGTCTGTTTGTTAACCAAGGTTTGTTGATTAGTTGCTACGAAGTG
TTTGTTCTCGTTAATTGCAATGTTGTTTTGACTTTTCACTTTTTGTAACTATAAGCTCGTAGAGAAGGCTACTGTTACTG
TTCTTACTCATAGATAATACACTGTTGTCAAGCATATAGACTACAGAGTACGTA--------------------------
---ATTTTCAAGGTAATTATTATATACATGGATGTCCATAGTTA-----------------------------C------
-----------TGAACTTTGAACAGTG---------TCTGTT-AAAGTCTGTAATTTTCTGAAGCAACCGTGCGGCGCAT
TTCCCGCTTTCTTCACTGTACAGTTTCCCCTCTGACGGATGCAGAAAGGCGCTTTCTCTTTGCCCTCACCATTCAGCAAG
CCATCGTGGGCAGGCTAGCGAGGTTTCGTGCCAGCCTTTATCGATCCATTGGTTTGTTGAGATGTCCAAATCTGTGCATT
CAACTCAATAGCAACGCATCAGCGGCTATATCGGTTTTGGGGCCACAAAAGCGAGGCATGCTGCGCGCGGTGCGCTCGCA
CGTCCCCTTTTTGGGGCTCAATTTTCTC-AAGAGGTTTTCGAGCCCAATC--GCATTATTTCAAGCCGAGTGAGCTGTTG
CTACACGCCGGTAATTTGTTGATTGCGATCGGCTGGTAAATCAGC-AGACAAATTATTGGG----TTGACGTACGTCATG
GCGTAGAAGATTGAGAACAACGTCGGACACGTTGCCCTTCAGGATGCTGCTTGTTAC----GTCAGTAGTGCTAGCTGCG
CTCCACCGTTCCTACCTGAAGCCTGAAGGATCATGCACGTACAGCCAATCGTGGCTACGGTTTTGGAGACACGTATAGTG
ACGTTCGGCCTGCTTGTCTTTGGCTTCTCTCGGATTTGCTCCTACTTATCCCTCAGAAAATCACTATTTCCTCTGTTTCA
TA----------------------------------
>SNPs
S-SS-SSS------------------------------------------------S------S-S--------SS--S-
---S---------------------S--S------------S---------------------------S----------
S---S---------S-----------------------------------------------------------------
--------S-----------------S------S------S----------------------S---S------------
---------------------------------------S---S-------S----------------------------
SS-S---------S-S-------------S----S-S---S----S----------------------------------
--------SSS-------S----------------------------------------------------S--------
----------------------------S---S----------S------------------------------------
----------------------------S-----------------------------------SSSS-------S----
----------------------------------------------------------------S---------------
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--------------------------------------------------SSSS--S------S--------S-------
----------------------------------------------SSSSSS---------------S---S--------
----------------------------------------------------S---------------------------
-----------------------------------S-----------S------------------S-------------
------------------------------------S-------------------------------------------
-------------------------------S------------------------------------------------
---------S-----------------S-----SS---------------------------------------------
-----------------------------------------SS-------------------------------------
--------------------------------------------------------------------S-----------
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---------------------S--------------SSSSSS-SSSSSSSSS-----S----------------SSSSSS
SSSSSSSSSSS-------------SSSSSSSSSSSS------------------------S-------------------
----------------------------S---------------------------------------------------
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------------------------S------------------------S------------------------------
---S--------S----------------------------S---------S----S------S----------------
--------------S-----------------S-----------------------------------------------
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---------------------------------------------------------------S----------------
-------------------------------------------------------------------S------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1011
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-------------------------------TGCGCTCTCTCTTCCTCTCT-----------------------------
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>reverse_2212
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---------------------------------------------------TGCATGATTTCAGGCCGAGT---------
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