Multiple sequence alignment - TraesCS5D01G189600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G189600 chr5D 100.000 3062 0 0 1 3062 291886297 291883236 0.000000e+00 5655.0
1 TraesCS5D01G189600 chr5A 92.885 2080 113 16 1 2052 384214817 384212745 0.000000e+00 2988.0
2 TraesCS5D01G189600 chr5A 86.458 576 32 22 2047 2606 384195595 384195050 9.460000e-165 590.0
3 TraesCS5D01G189600 chr5B 92.352 2105 108 17 1 2078 332436984 332434906 0.000000e+00 2946.0
4 TraesCS5D01G189600 chr5B 90.909 99 7 2 2334 2431 332434409 332434312 6.890000e-27 132.0
5 TraesCS5D01G189600 chr1D 79.000 100 18 3 777 873 112749990 112749891 7.090000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G189600 chr5D 291883236 291886297 3061 True 5655 5655 100.0000 1 3062 1 chr5D.!!$R1 3061
1 TraesCS5D01G189600 chr5A 384212745 384214817 2072 True 2988 2988 92.8850 1 2052 1 chr5A.!!$R2 2051
2 TraesCS5D01G189600 chr5A 384195050 384195595 545 True 590 590 86.4580 2047 2606 1 chr5A.!!$R1 559
3 TraesCS5D01G189600 chr5B 332434312 332436984 2672 True 1539 2946 91.6305 1 2431 2 chr5B.!!$R1 2430

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.535335 GGACAACCGAGATGCTGGTA 59.465 55.0 0.0 0.0 37.54 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 2291 0.108424 GTCTGCTGGAGGCTGTAGTG 60.108 60.0 0.0 0.0 42.39 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.003580 TGCCTTCCTCTTGATCCACAC 59.996 52.381 0.00 0.00 0.00 3.82
111 112 6.479990 CACGCTGGAAGAATATGATTCTTGTA 59.520 38.462 17.01 6.80 38.73 2.41
116 117 6.767902 TGGAAGAATATGATTCTTGTACTGCC 59.232 38.462 17.01 11.71 38.73 4.85
161 162 4.457257 GCCATTACCTTGGATCAGCTTATC 59.543 45.833 0.00 0.00 39.25 1.75
224 225 2.838202 GAGAGGGATTACCACAAGGACA 59.162 50.000 0.00 0.00 43.89 4.02
239 240 0.535335 GGACAACCGAGATGCTGGTA 59.465 55.000 0.00 0.00 37.54 3.25
266 267 2.223735 CCTAATAGCGGAAACTGCTCGA 60.224 50.000 8.38 0.00 39.99 4.04
301 302 1.686800 GCAATGGGGATGCCAACCT 60.687 57.895 5.30 0.00 37.85 3.50
304 305 4.738998 TGGGGATGCCAACCTGCG 62.739 66.667 5.30 0.00 0.00 5.18
318 319 4.023193 CCAACCTGCGTACTGAAGAAAATT 60.023 41.667 0.00 0.00 0.00 1.82
334 335 8.306038 TGAAGAAAATTGTGATGTTAATGGAGG 58.694 33.333 0.00 0.00 0.00 4.30
350 351 2.231478 TGGAGGCGTTCTAACAGAAGAG 59.769 50.000 0.00 0.00 34.42 2.85
362 363 8.651588 GTTCTAACAGAAGAGTGTAATGATGTG 58.348 37.037 0.00 0.00 34.42 3.21
371 372 7.009179 AGAGTGTAATGATGTGAAGGAAAGA 57.991 36.000 0.00 0.00 0.00 2.52
377 378 1.672881 GATGTGAAGGAAAGATGGCGG 59.327 52.381 0.00 0.00 0.00 6.13
403 404 2.550830 AGAAAAGCTGGACGACATGT 57.449 45.000 0.00 0.00 0.00 3.21
431 434 6.288941 TCCCTTAGATTGACACGACAATAA 57.711 37.500 0.00 0.00 40.03 1.40
453 456 5.646692 AGGGCAGGATAAACTATTAAGCA 57.353 39.130 0.00 0.00 0.00 3.91
457 460 6.072452 GGGCAGGATAAACTATTAAGCATGAC 60.072 42.308 0.00 0.00 0.00 3.06
459 462 6.347725 GCAGGATAAACTATTAAGCATGACCG 60.348 42.308 0.00 0.00 0.00 4.79
469 472 7.817962 ACTATTAAGCATGACCGATGTATAACC 59.182 37.037 0.00 0.00 34.14 2.85
497 500 8.846211 AGTTAGTGTATATGTTTGCAGTTTTGT 58.154 29.630 0.00 0.00 0.00 2.83
536 539 6.183360 GCATTCCTCGAATTTTGGATTACTGA 60.183 38.462 0.00 0.00 28.87 3.41
538 541 6.925610 TCCTCGAATTTTGGATTACTGATG 57.074 37.500 0.00 0.00 0.00 3.07
549 552 8.640063 TTTGGATTACTGATGATGATTATGGG 57.360 34.615 0.00 0.00 0.00 4.00
553 556 7.884877 GGATTACTGATGATGATTATGGGTGAA 59.115 37.037 0.00 0.00 0.00 3.18
576 581 7.547019 TGAACATGTCTGAGATAGATGTTGAAC 59.453 37.037 16.99 7.92 38.25 3.18
590 595 7.072177 AGATGTTGAACGGTGTATAATTGTG 57.928 36.000 0.00 0.00 0.00 3.33
597 602 6.428465 TGAACGGTGTATAATTGTGTTGATGT 59.572 34.615 0.00 0.00 0.00 3.06
650 655 3.950395 AGCTATCATTCCTTTGGTTCAGC 59.050 43.478 0.00 0.00 0.00 4.26
664 669 4.081406 TGGTTCAGCTTGATATGCAGTTT 58.919 39.130 0.00 0.00 0.00 2.66
665 670 4.082625 TGGTTCAGCTTGATATGCAGTTTG 60.083 41.667 0.00 0.00 0.00 2.93
666 671 4.082571 GGTTCAGCTTGATATGCAGTTTGT 60.083 41.667 0.00 0.00 0.00 2.83
667 672 5.464168 GTTCAGCTTGATATGCAGTTTGTT 58.536 37.500 0.00 0.00 0.00 2.83
808 844 1.066573 ACCGAAGCTGACCAGATGAAG 60.067 52.381 0.47 0.00 0.00 3.02
833 869 3.963733 CCAATCTCTGAACCTGGCA 57.036 52.632 0.00 0.00 0.00 4.92
1089 1125 0.478072 ACAGAAGCAATGTGGGGTCA 59.522 50.000 0.00 0.00 0.00 4.02
1797 1833 2.434185 GATCGTGTTGCGCTGGGA 60.434 61.111 9.73 0.00 41.07 4.37
1800 1836 2.803155 ATCGTGTTGCGCTGGGACAT 62.803 55.000 9.73 0.00 41.07 3.06
1838 1874 1.536662 AGAAGCCAGAGGAACCGGT 60.537 57.895 0.00 0.00 0.00 5.28
1951 1987 4.345337 GGAAGCCGAAGCCGATAG 57.655 61.111 0.00 0.00 41.25 2.08
2030 2066 2.126228 CGGTAACAAGAGCGCGGA 60.126 61.111 8.83 0.00 33.05 5.54
2073 2109 0.458543 CAAGGTGATGTCGGAGTCGG 60.459 60.000 0.00 0.00 36.95 4.79
2081 2117 1.153997 GTCGGAGTCGGAAGCACTC 60.154 63.158 1.41 0.00 37.46 3.51
2082 2118 2.202492 CGGAGTCGGAAGCACTCG 60.202 66.667 0.00 0.00 38.38 4.18
2084 2120 2.637383 GGAGTCGGAAGCACTCGGT 61.637 63.158 0.00 0.00 38.38 4.69
2086 2122 2.143594 GAGTCGGAAGCACTCGGTGT 62.144 60.000 6.02 0.00 35.75 4.16
2128 2184 8.085296 TGCAAAAATACTGTAAATCCAAACGAT 58.915 29.630 0.00 0.00 0.00 3.73
2138 2194 7.915508 TGTAAATCCAAACGATATTACTGCTG 58.084 34.615 0.00 0.00 32.03 4.41
2168 2247 6.037172 GGTAAAAGATCAGAAGCTGCGATAAA 59.963 38.462 0.00 0.00 0.00 1.40
2177 2256 5.680229 CAGAAGCTGCGATAAATTTCATGTC 59.320 40.000 0.00 0.00 0.00 3.06
2178 2257 5.355071 AGAAGCTGCGATAAATTTCATGTCA 59.645 36.000 0.00 0.00 0.00 3.58
2179 2258 4.913376 AGCTGCGATAAATTTCATGTCAC 58.087 39.130 0.00 0.00 0.00 3.67
2180 2259 3.720818 GCTGCGATAAATTTCATGTCACG 59.279 43.478 0.00 0.00 0.00 4.35
2181 2260 4.271590 TGCGATAAATTTCATGTCACGG 57.728 40.909 0.00 0.00 0.00 4.94
2182 2261 3.035942 GCGATAAATTTCATGTCACGGC 58.964 45.455 0.00 0.00 0.00 5.68
2183 2262 3.486708 GCGATAAATTTCATGTCACGGCA 60.487 43.478 0.00 0.00 0.00 5.69
2185 2264 5.273170 CGATAAATTTCATGTCACGGCATT 58.727 37.500 0.00 0.00 0.00 3.56
2187 2266 4.517952 AAATTTCATGTCACGGCATTGA 57.482 36.364 0.00 0.00 0.00 2.57
2188 2267 3.770263 ATTTCATGTCACGGCATTGAG 57.230 42.857 0.00 0.00 0.00 3.02
2189 2268 0.804364 TTCATGTCACGGCATTGAGC 59.196 50.000 0.00 0.00 44.65 4.26
2190 2269 0.036105 TCATGTCACGGCATTGAGCT 60.036 50.000 0.00 0.00 44.79 4.09
2191 2270 0.376152 CATGTCACGGCATTGAGCTC 59.624 55.000 6.82 6.82 44.79 4.09
2192 2271 0.036105 ATGTCACGGCATTGAGCTCA 60.036 50.000 13.74 13.74 44.79 4.26
2193 2272 0.671472 TGTCACGGCATTGAGCTCAG 60.671 55.000 17.43 7.60 44.79 3.35
2194 2273 0.390340 GTCACGGCATTGAGCTCAGA 60.390 55.000 17.43 8.70 44.79 3.27
2195 2274 0.321346 TCACGGCATTGAGCTCAGAA 59.679 50.000 17.43 3.10 44.79 3.02
2196 2275 1.065926 TCACGGCATTGAGCTCAGAAT 60.066 47.619 17.43 5.74 44.79 2.40
2197 2276 1.063616 CACGGCATTGAGCTCAGAATG 59.936 52.381 19.78 19.78 44.79 2.67
2198 2277 1.339438 ACGGCATTGAGCTCAGAATGT 60.339 47.619 23.11 14.64 44.79 2.71
2199 2278 1.329906 CGGCATTGAGCTCAGAATGTC 59.670 52.381 23.11 21.09 44.79 3.06
2201 2280 2.097142 GGCATTGAGCTCAGAATGTCAC 59.903 50.000 22.37 13.12 44.79 3.67
2202 2281 2.097142 GCATTGAGCTCAGAATGTCACC 59.903 50.000 23.11 8.45 41.15 4.02
2203 2282 3.340928 CATTGAGCTCAGAATGTCACCA 58.659 45.455 17.43 0.00 37.40 4.17
2204 2283 3.708403 TTGAGCTCAGAATGTCACCAT 57.292 42.857 17.43 0.00 37.40 3.55
2205 2284 2.981898 TGAGCTCAGAATGTCACCATG 58.018 47.619 13.74 0.00 37.40 3.66
2243 2326 2.358615 GCAGACACATGTCCGGCA 60.359 61.111 16.92 0.00 45.85 5.69
2245 2328 1.308069 GCAGACACATGTCCGGCAAT 61.308 55.000 16.92 0.00 45.85 3.56
2259 2532 5.163602 TGTCCGGCAATAATGAAATGTTACC 60.164 40.000 0.00 0.00 0.00 2.85
2271 2544 8.519492 AATGAAATGTTACCAAAGAATTGTCG 57.481 30.769 0.00 0.00 34.60 4.35
2302 2606 1.538950 CTCTTGCTGAGGCCAGAAAAC 59.461 52.381 5.01 0.00 43.02 2.43
2448 2753 1.279271 AGCAAGGATCCTTTGCGTACT 59.721 47.619 24.93 11.79 36.20 2.73
2450 2755 2.935238 GCAAGGATCCTTTGCGTACTGA 60.935 50.000 24.93 0.00 33.42 3.41
2453 2758 2.567615 AGGATCCTTTGCGTACTGAACT 59.432 45.455 9.02 0.00 0.00 3.01
2456 2761 4.491676 GATCCTTTGCGTACTGAACTGTA 58.508 43.478 0.00 0.00 0.00 2.74
2479 2789 3.701241 CGTCTCTCTTGTGCTCCTATTC 58.299 50.000 0.00 0.00 0.00 1.75
2490 2800 8.758829 TCTTGTGCTCCTATTCTAGACAAAATA 58.241 33.333 0.00 0.00 0.00 1.40
2491 2801 9.553064 CTTGTGCTCCTATTCTAGACAAAATAT 57.447 33.333 0.00 0.00 0.00 1.28
2535 2845 3.826524 TGAGTAGCAATCCACAAAACCA 58.173 40.909 0.00 0.00 0.00 3.67
2600 2910 9.838339 TGTTCAAACATTTTACCAAACCATAAT 57.162 25.926 0.00 0.00 33.17 1.28
2612 2922 9.699703 TTACCAAACCATAATTTTAGTTTCTGC 57.300 29.630 0.00 0.00 30.27 4.26
2613 2923 7.731054 ACCAAACCATAATTTTAGTTTCTGCA 58.269 30.769 0.00 0.00 30.27 4.41
2614 2924 8.207545 ACCAAACCATAATTTTAGTTTCTGCAA 58.792 29.630 0.00 0.00 30.27 4.08
2615 2925 8.711457 CCAAACCATAATTTTAGTTTCTGCAAG 58.289 33.333 0.00 0.00 30.27 4.01
2616 2926 8.711457 CAAACCATAATTTTAGTTTCTGCAAGG 58.289 33.333 0.00 0.00 30.27 3.61
2617 2927 7.539034 ACCATAATTTTAGTTTCTGCAAGGT 57.461 32.000 0.00 0.00 0.00 3.50
2618 2928 7.378181 ACCATAATTTTAGTTTCTGCAAGGTG 58.622 34.615 0.00 0.00 0.00 4.00
2619 2929 6.813152 CCATAATTTTAGTTTCTGCAAGGTGG 59.187 38.462 0.00 0.00 0.00 4.61
2620 2930 3.726291 TTTTAGTTTCTGCAAGGTGGC 57.274 42.857 0.00 0.00 0.00 5.01
2621 2931 1.616159 TTAGTTTCTGCAAGGTGGCC 58.384 50.000 0.00 0.00 0.00 5.36
2622 2932 0.605319 TAGTTTCTGCAAGGTGGCCG 60.605 55.000 0.00 0.00 0.00 6.13
2623 2933 2.193536 GTTTCTGCAAGGTGGCCGT 61.194 57.895 0.00 0.00 0.00 5.68
2624 2934 2.192861 TTTCTGCAAGGTGGCCGTG 61.193 57.895 0.00 0.00 36.14 4.94
2625 2935 2.616797 TTTCTGCAAGGTGGCCGTGA 62.617 55.000 0.00 0.00 35.05 4.35
2626 2936 2.594303 CTGCAAGGTGGCCGTGAA 60.594 61.111 0.00 0.00 35.05 3.18
2627 2937 2.124109 TGCAAGGTGGCCGTGAAA 60.124 55.556 0.00 0.00 35.05 2.69
2628 2938 1.733402 CTGCAAGGTGGCCGTGAAAA 61.733 55.000 0.00 0.00 35.05 2.29
2629 2939 1.112315 TGCAAGGTGGCCGTGAAAAT 61.112 50.000 0.00 0.00 35.05 1.82
2630 2940 0.885196 GCAAGGTGGCCGTGAAAATA 59.115 50.000 0.00 0.00 35.05 1.40
2631 2941 1.135402 GCAAGGTGGCCGTGAAAATAG 60.135 52.381 0.00 0.00 35.05 1.73
2632 2942 2.159382 CAAGGTGGCCGTGAAAATAGT 58.841 47.619 0.00 0.00 35.05 2.12
2633 2943 1.821216 AGGTGGCCGTGAAAATAGTG 58.179 50.000 0.00 0.00 0.00 2.74
2634 2944 0.170339 GGTGGCCGTGAAAATAGTGC 59.830 55.000 0.00 0.00 0.00 4.40
2635 2945 0.878416 GTGGCCGTGAAAATAGTGCA 59.122 50.000 0.00 0.00 0.00 4.57
2636 2946 1.472480 GTGGCCGTGAAAATAGTGCAT 59.528 47.619 0.00 0.00 0.00 3.96
2637 2947 1.742831 TGGCCGTGAAAATAGTGCATC 59.257 47.619 0.00 0.00 0.00 3.91
2638 2948 1.065551 GGCCGTGAAAATAGTGCATCC 59.934 52.381 0.00 0.00 0.00 3.51
2639 2949 1.065551 GCCGTGAAAATAGTGCATCCC 59.934 52.381 0.00 0.00 0.00 3.85
2640 2950 1.330521 CCGTGAAAATAGTGCATCCCG 59.669 52.381 0.00 0.00 0.00 5.14
2641 2951 2.276201 CGTGAAAATAGTGCATCCCGA 58.724 47.619 0.00 0.00 0.00 5.14
2642 2952 2.030457 CGTGAAAATAGTGCATCCCGAC 59.970 50.000 0.00 0.00 0.00 4.79
2643 2953 2.354821 GTGAAAATAGTGCATCCCGACC 59.645 50.000 0.00 0.00 0.00 4.79
2644 2954 2.238646 TGAAAATAGTGCATCCCGACCT 59.761 45.455 0.00 0.00 0.00 3.85
2645 2955 3.452990 TGAAAATAGTGCATCCCGACCTA 59.547 43.478 0.00 0.00 0.00 3.08
2646 2956 4.080807 TGAAAATAGTGCATCCCGACCTAA 60.081 41.667 0.00 0.00 0.00 2.69
2647 2957 3.753294 AATAGTGCATCCCGACCTAAG 57.247 47.619 0.00 0.00 0.00 2.18
2648 2958 2.154567 TAGTGCATCCCGACCTAAGT 57.845 50.000 0.00 0.00 0.00 2.24
2649 2959 2.154567 AGTGCATCCCGACCTAAGTA 57.845 50.000 0.00 0.00 0.00 2.24
2650 2960 2.032620 AGTGCATCCCGACCTAAGTAG 58.967 52.381 0.00 0.00 0.00 2.57
2651 2961 0.750850 TGCATCCCGACCTAAGTAGC 59.249 55.000 0.00 0.00 0.00 3.58
2652 2962 0.750850 GCATCCCGACCTAAGTAGCA 59.249 55.000 0.00 0.00 0.00 3.49
2653 2963 1.269831 GCATCCCGACCTAAGTAGCAG 60.270 57.143 0.00 0.00 0.00 4.24
2654 2964 1.041437 ATCCCGACCTAAGTAGCAGC 58.959 55.000 0.00 0.00 0.00 5.25
2655 2965 0.323999 TCCCGACCTAAGTAGCAGCA 60.324 55.000 0.00 0.00 0.00 4.41
2656 2966 0.179108 CCCGACCTAAGTAGCAGCAC 60.179 60.000 0.00 0.00 0.00 4.40
2657 2967 0.530744 CCGACCTAAGTAGCAGCACA 59.469 55.000 0.00 0.00 0.00 4.57
2658 2968 1.067142 CCGACCTAAGTAGCAGCACAA 60.067 52.381 0.00 0.00 0.00 3.33
2659 2969 2.611971 CCGACCTAAGTAGCAGCACAAA 60.612 50.000 0.00 0.00 0.00 2.83
2660 2970 3.064207 CGACCTAAGTAGCAGCACAAAA 58.936 45.455 0.00 0.00 0.00 2.44
2661 2971 3.684788 CGACCTAAGTAGCAGCACAAAAT 59.315 43.478 0.00 0.00 0.00 1.82
2662 2972 4.154195 CGACCTAAGTAGCAGCACAAAATT 59.846 41.667 0.00 0.00 0.00 1.82
2663 2973 5.629079 ACCTAAGTAGCAGCACAAAATTC 57.371 39.130 0.00 0.00 0.00 2.17
2664 2974 4.154195 ACCTAAGTAGCAGCACAAAATTCG 59.846 41.667 0.00 0.00 0.00 3.34
2665 2975 4.391830 CCTAAGTAGCAGCACAAAATTCGA 59.608 41.667 0.00 0.00 0.00 3.71
2666 2976 3.813529 AGTAGCAGCACAAAATTCGAC 57.186 42.857 0.00 0.00 0.00 4.20
2667 2977 3.138304 AGTAGCAGCACAAAATTCGACA 58.862 40.909 0.00 0.00 0.00 4.35
2668 2978 2.405892 AGCAGCACAAAATTCGACAC 57.594 45.000 0.00 0.00 0.00 3.67
2669 2979 1.001378 AGCAGCACAAAATTCGACACC 60.001 47.619 0.00 0.00 0.00 4.16
2670 2980 1.930371 GCAGCACAAAATTCGACACCC 60.930 52.381 0.00 0.00 0.00 4.61
2671 2981 1.336440 CAGCACAAAATTCGACACCCA 59.664 47.619 0.00 0.00 0.00 4.51
2672 2982 1.336755 AGCACAAAATTCGACACCCAC 59.663 47.619 0.00 0.00 0.00 4.61
2673 2983 1.066303 GCACAAAATTCGACACCCACA 59.934 47.619 0.00 0.00 0.00 4.17
2674 2984 2.288152 GCACAAAATTCGACACCCACAT 60.288 45.455 0.00 0.00 0.00 3.21
2675 2985 3.798548 GCACAAAATTCGACACCCACATT 60.799 43.478 0.00 0.00 0.00 2.71
2676 2986 4.367450 CACAAAATTCGACACCCACATTT 58.633 39.130 0.00 0.00 0.00 2.32
2677 2987 4.808364 CACAAAATTCGACACCCACATTTT 59.192 37.500 0.00 0.00 0.00 1.82
2678 2988 5.980116 CACAAAATTCGACACCCACATTTTA 59.020 36.000 2.37 0.00 0.00 1.52
2679 2989 6.477033 CACAAAATTCGACACCCACATTTTAA 59.523 34.615 2.37 0.00 0.00 1.52
2680 2990 7.170658 CACAAAATTCGACACCCACATTTTAAT 59.829 33.333 2.37 0.00 0.00 1.40
2681 2991 8.361139 ACAAAATTCGACACCCACATTTTAATA 58.639 29.630 2.37 0.00 0.00 0.98
2682 2992 8.643752 CAAAATTCGACACCCACATTTTAATAC 58.356 33.333 2.37 0.00 0.00 1.89
2683 2993 7.455641 AATTCGACACCCACATTTTAATACA 57.544 32.000 0.00 0.00 0.00 2.29
2684 2994 6.879276 TTCGACACCCACATTTTAATACAA 57.121 33.333 0.00 0.00 0.00 2.41
2685 2995 7.455641 TTCGACACCCACATTTTAATACAAT 57.544 32.000 0.00 0.00 0.00 2.71
2686 2996 7.079182 TCGACACCCACATTTTAATACAATC 57.921 36.000 0.00 0.00 0.00 2.67
2687 2997 6.655425 TCGACACCCACATTTTAATACAATCA 59.345 34.615 0.00 0.00 0.00 2.57
2688 2998 7.338196 TCGACACCCACATTTTAATACAATCAT 59.662 33.333 0.00 0.00 0.00 2.45
2689 2999 7.643764 CGACACCCACATTTTAATACAATCATC 59.356 37.037 0.00 0.00 0.00 2.92
2690 3000 7.781056 ACACCCACATTTTAATACAATCATCC 58.219 34.615 0.00 0.00 0.00 3.51
2691 3001 7.398618 ACACCCACATTTTAATACAATCATCCA 59.601 33.333 0.00 0.00 0.00 3.41
2692 3002 8.256605 CACCCACATTTTAATACAATCATCCAA 58.743 33.333 0.00 0.00 0.00 3.53
2693 3003 8.257306 ACCCACATTTTAATACAATCATCCAAC 58.743 33.333 0.00 0.00 0.00 3.77
2694 3004 8.256605 CCCACATTTTAATACAATCATCCAACA 58.743 33.333 0.00 0.00 0.00 3.33
2695 3005 9.650539 CCACATTTTAATACAATCATCCAACAA 57.349 29.630 0.00 0.00 0.00 2.83
2697 3007 9.369904 ACATTTTAATACAATCATCCAACAAGC 57.630 29.630 0.00 0.00 0.00 4.01
2698 3008 9.368674 CATTTTAATACAATCATCCAACAAGCA 57.631 29.630 0.00 0.00 0.00 3.91
2699 3009 9.941325 ATTTTAATACAATCATCCAACAAGCAA 57.059 25.926 0.00 0.00 0.00 3.91
2700 3010 9.770097 TTTTAATACAATCATCCAACAAGCAAA 57.230 25.926 0.00 0.00 0.00 3.68
2701 3011 8.984891 TTAATACAATCATCCAACAAGCAAAG 57.015 30.769 0.00 0.00 0.00 2.77
2702 3012 6.839124 ATACAATCATCCAACAAGCAAAGA 57.161 33.333 0.00 0.00 0.00 2.52
2703 3013 5.130292 ACAATCATCCAACAAGCAAAGAG 57.870 39.130 0.00 0.00 0.00 2.85
2704 3014 4.828939 ACAATCATCCAACAAGCAAAGAGA 59.171 37.500 0.00 0.00 0.00 3.10
2705 3015 5.048224 ACAATCATCCAACAAGCAAAGAGAG 60.048 40.000 0.00 0.00 0.00 3.20
2706 3016 3.415212 TCATCCAACAAGCAAAGAGAGG 58.585 45.455 0.00 0.00 0.00 3.69
2707 3017 3.072915 TCATCCAACAAGCAAAGAGAGGA 59.927 43.478 0.00 0.00 0.00 3.71
2708 3018 3.576078 TCCAACAAGCAAAGAGAGGAA 57.424 42.857 0.00 0.00 0.00 3.36
2709 3019 3.897239 TCCAACAAGCAAAGAGAGGAAA 58.103 40.909 0.00 0.00 0.00 3.13
2710 3020 3.885297 TCCAACAAGCAAAGAGAGGAAAG 59.115 43.478 0.00 0.00 0.00 2.62
2711 3021 3.885297 CCAACAAGCAAAGAGAGGAAAGA 59.115 43.478 0.00 0.00 0.00 2.52
2712 3022 4.339247 CCAACAAGCAAAGAGAGGAAAGAA 59.661 41.667 0.00 0.00 0.00 2.52
2713 3023 5.010415 CCAACAAGCAAAGAGAGGAAAGAAT 59.990 40.000 0.00 0.00 0.00 2.40
2714 3024 6.462067 CCAACAAGCAAAGAGAGGAAAGAATT 60.462 38.462 0.00 0.00 0.00 2.17
2715 3025 7.255590 CCAACAAGCAAAGAGAGGAAAGAATTA 60.256 37.037 0.00 0.00 0.00 1.40
2716 3026 7.446001 ACAAGCAAAGAGAGGAAAGAATTAG 57.554 36.000 0.00 0.00 0.00 1.73
2717 3027 6.432472 ACAAGCAAAGAGAGGAAAGAATTAGG 59.568 38.462 0.00 0.00 0.00 2.69
2718 3028 5.504853 AGCAAAGAGAGGAAAGAATTAGGG 58.495 41.667 0.00 0.00 0.00 3.53
2719 3029 5.014649 AGCAAAGAGAGGAAAGAATTAGGGT 59.985 40.000 0.00 0.00 0.00 4.34
2720 3030 5.712446 GCAAAGAGAGGAAAGAATTAGGGTT 59.288 40.000 0.00 0.00 0.00 4.11
2721 3031 6.209589 GCAAAGAGAGGAAAGAATTAGGGTTT 59.790 38.462 0.00 0.00 0.00 3.27
2722 3032 7.575909 GCAAAGAGAGGAAAGAATTAGGGTTTC 60.576 40.741 0.00 0.00 0.00 2.78
2723 3033 6.068461 AGAGAGGAAAGAATTAGGGTTTCC 57.932 41.667 5.14 5.14 46.58 3.13
2734 3044 4.513777 GGTTTCCACCCCTTGGTC 57.486 61.111 0.00 0.00 45.57 4.02
2735 3045 1.602605 GGTTTCCACCCCTTGGTCG 60.603 63.158 0.00 0.00 45.57 4.79
2736 3046 1.602605 GTTTCCACCCCTTGGTCGG 60.603 63.158 0.00 0.00 45.57 4.79
2737 3047 2.079911 TTTCCACCCCTTGGTCGGT 61.080 57.895 0.00 0.00 45.57 4.69
2738 3048 2.346284 TTTCCACCCCTTGGTCGGTG 62.346 60.000 7.76 7.76 45.57 4.94
2772 3082 3.710722 CCGCCTCTGGTGGCTCTT 61.711 66.667 11.15 0.00 46.89 2.85
2773 3083 3.965539 CCGCCTCTGGTGGCTCTTG 62.966 68.421 11.15 0.00 46.89 3.02
2775 3085 2.673523 CCTCTGGTGGCTCTTGGG 59.326 66.667 0.00 0.00 0.00 4.12
2776 3086 2.673523 CTCTGGTGGCTCTTGGGG 59.326 66.667 0.00 0.00 0.00 4.96
2777 3087 3.635268 CTCTGGTGGCTCTTGGGGC 62.635 68.421 0.00 0.00 0.00 5.80
2778 3088 3.970410 CTGGTGGCTCTTGGGGCA 61.970 66.667 0.00 0.00 39.45 5.36
2779 3089 3.267233 TGGTGGCTCTTGGGGCAT 61.267 61.111 0.00 0.00 43.39 4.40
2780 3090 2.757099 GGTGGCTCTTGGGGCATG 60.757 66.667 0.00 0.00 43.39 4.06
2781 3091 2.757099 GTGGCTCTTGGGGCATGG 60.757 66.667 0.00 0.00 43.39 3.66
2782 3092 2.940467 TGGCTCTTGGGGCATGGA 60.940 61.111 0.00 0.00 36.85 3.41
2783 3093 2.123982 GGCTCTTGGGGCATGGAG 60.124 66.667 0.00 0.00 0.00 3.86
2784 3094 2.123982 GCTCTTGGGGCATGGAGG 60.124 66.667 0.00 0.00 0.00 4.30
2785 3095 2.988839 GCTCTTGGGGCATGGAGGT 61.989 63.158 0.00 0.00 0.00 3.85
2786 3096 1.077212 CTCTTGGGGCATGGAGGTG 60.077 63.158 0.00 0.00 0.00 4.00
2787 3097 1.852157 TCTTGGGGCATGGAGGTGT 60.852 57.895 0.00 0.00 0.00 4.16
2788 3098 1.679977 CTTGGGGCATGGAGGTGTG 60.680 63.158 0.00 0.00 0.00 3.82
2789 3099 3.222599 TTGGGGCATGGAGGTGTGG 62.223 63.158 0.00 0.00 0.00 4.17
2793 3103 4.408821 GCATGGAGGTGTGGCGGA 62.409 66.667 0.00 0.00 0.00 5.54
2794 3104 2.436646 CATGGAGGTGTGGCGGAC 60.437 66.667 0.00 0.00 0.00 4.79
2795 3105 3.717294 ATGGAGGTGTGGCGGACC 61.717 66.667 0.00 0.00 0.00 4.46
2797 3107 2.682494 GGAGGTGTGGCGGACCTA 60.682 66.667 7.21 0.00 44.28 3.08
2798 3108 2.722201 GGAGGTGTGGCGGACCTAG 61.722 68.421 7.21 0.00 44.28 3.02
2799 3109 1.681327 GAGGTGTGGCGGACCTAGA 60.681 63.158 7.21 0.00 44.28 2.43
2800 3110 1.946475 GAGGTGTGGCGGACCTAGAC 61.946 65.000 7.21 0.00 44.28 2.59
2801 3111 2.577593 GTGTGGCGGACCTAGACC 59.422 66.667 0.00 0.00 36.63 3.85
2802 3112 2.682494 TGTGGCGGACCTAGACCC 60.682 66.667 0.00 0.00 36.63 4.46
2803 3113 3.468140 GTGGCGGACCTAGACCCC 61.468 72.222 0.00 0.00 36.63 4.95
2804 3114 4.791069 TGGCGGACCTAGACCCCC 62.791 72.222 0.00 0.00 36.63 5.40
2807 3117 2.363406 CGGACCTAGACCCCCGTT 60.363 66.667 0.00 0.00 37.40 4.44
2808 3118 2.718073 CGGACCTAGACCCCCGTTG 61.718 68.421 0.00 0.00 37.40 4.10
2809 3119 2.364780 GGACCTAGACCCCCGTTGG 61.365 68.421 0.00 0.00 0.00 3.77
2810 3120 3.007323 ACCTAGACCCCCGTTGGC 61.007 66.667 0.00 0.00 0.00 4.52
2811 3121 4.157120 CCTAGACCCCCGTTGGCG 62.157 72.222 0.00 0.00 37.95 5.69
2821 3131 4.547367 CGTTGGCGGGAGGGATCC 62.547 72.222 1.92 1.92 0.00 3.36
2822 3132 4.191015 GTTGGCGGGAGGGATCCC 62.191 72.222 24.59 24.59 46.43 3.85
2839 3149 6.301169 GGATCCCATCCTTATTGTAGGTAG 57.699 45.833 0.00 0.00 46.19 3.18
2840 3150 5.785940 GGATCCCATCCTTATTGTAGGTAGT 59.214 44.000 0.00 0.00 46.19 2.73
2841 3151 6.272558 GGATCCCATCCTTATTGTAGGTAGTT 59.727 42.308 0.00 0.00 46.19 2.24
2842 3152 7.202195 GGATCCCATCCTTATTGTAGGTAGTTT 60.202 40.741 0.00 0.00 46.19 2.66
2843 3153 7.519347 TCCCATCCTTATTGTAGGTAGTTTT 57.481 36.000 0.00 0.00 36.63 2.43
2844 3154 8.626917 TCCCATCCTTATTGTAGGTAGTTTTA 57.373 34.615 0.00 0.00 36.63 1.52
2845 3155 8.711170 TCCCATCCTTATTGTAGGTAGTTTTAG 58.289 37.037 0.00 0.00 36.63 1.85
2846 3156 8.491958 CCCATCCTTATTGTAGGTAGTTTTAGT 58.508 37.037 0.00 0.00 36.63 2.24
2847 3157 9.326413 CCATCCTTATTGTAGGTAGTTTTAGTG 57.674 37.037 0.00 0.00 36.63 2.74
2848 3158 9.886132 CATCCTTATTGTAGGTAGTTTTAGTGT 57.114 33.333 0.00 0.00 36.63 3.55
2850 3160 9.317827 TCCTTATTGTAGGTAGTTTTAGTGTCT 57.682 33.333 0.00 0.00 36.63 3.41
2851 3161 9.583765 CCTTATTGTAGGTAGTTTTAGTGTCTC 57.416 37.037 0.00 0.00 0.00 3.36
2852 3162 9.286946 CTTATTGTAGGTAGTTTTAGTGTCTCG 57.713 37.037 0.00 0.00 0.00 4.04
2853 3163 5.633830 TGTAGGTAGTTTTAGTGTCTCGG 57.366 43.478 0.00 0.00 0.00 4.63
2854 3164 5.072741 TGTAGGTAGTTTTAGTGTCTCGGT 58.927 41.667 0.00 0.00 0.00 4.69
2855 3165 5.536161 TGTAGGTAGTTTTAGTGTCTCGGTT 59.464 40.000 0.00 0.00 0.00 4.44
2856 3166 4.879598 AGGTAGTTTTAGTGTCTCGGTTG 58.120 43.478 0.00 0.00 0.00 3.77
2857 3167 3.992427 GGTAGTTTTAGTGTCTCGGTTGG 59.008 47.826 0.00 0.00 0.00 3.77
2858 3168 4.262164 GGTAGTTTTAGTGTCTCGGTTGGA 60.262 45.833 0.00 0.00 0.00 3.53
2859 3169 3.991367 AGTTTTAGTGTCTCGGTTGGAG 58.009 45.455 0.00 0.00 44.58 3.86
2860 3170 2.450609 TTTAGTGTCTCGGTTGGAGC 57.549 50.000 0.00 0.00 42.82 4.70
2861 3171 0.242825 TTAGTGTCTCGGTTGGAGCG 59.757 55.000 0.00 0.00 42.82 5.03
2862 3172 0.607217 TAGTGTCTCGGTTGGAGCGA 60.607 55.000 2.17 2.17 46.53 4.93
2867 3177 2.915659 TCGGTTGGAGCGAGTGGT 60.916 61.111 0.00 0.00 43.66 4.16
2868 3178 2.738521 CGGTTGGAGCGAGTGGTG 60.739 66.667 0.00 0.00 42.41 4.17
2869 3179 2.358737 GGTTGGAGCGAGTGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
2870 3180 2.358737 GTTGGAGCGAGTGGTGGG 60.359 66.667 0.00 0.00 0.00 4.61
2871 3181 4.329545 TTGGAGCGAGTGGTGGGC 62.330 66.667 0.00 0.00 0.00 5.36
2873 3183 4.767255 GGAGCGAGTGGTGGGCAG 62.767 72.222 0.00 0.00 0.00 4.85
2885 3195 2.590092 GGGCAGCGTCCCATAGTT 59.410 61.111 10.92 0.00 45.82 2.24
2886 3196 1.827394 GGGCAGCGTCCCATAGTTA 59.173 57.895 10.92 0.00 45.82 2.24
2887 3197 0.179468 GGGCAGCGTCCCATAGTTAA 59.821 55.000 10.92 0.00 45.82 2.01
2888 3198 1.407712 GGGCAGCGTCCCATAGTTAAA 60.408 52.381 10.92 0.00 45.82 1.52
2889 3199 2.361789 GGCAGCGTCCCATAGTTAAAA 58.638 47.619 0.00 0.00 0.00 1.52
2890 3200 2.949644 GGCAGCGTCCCATAGTTAAAAT 59.050 45.455 0.00 0.00 0.00 1.82
2891 3201 4.131596 GGCAGCGTCCCATAGTTAAAATA 58.868 43.478 0.00 0.00 0.00 1.40
2892 3202 4.577283 GGCAGCGTCCCATAGTTAAAATAA 59.423 41.667 0.00 0.00 0.00 1.40
2893 3203 5.240844 GGCAGCGTCCCATAGTTAAAATAAT 59.759 40.000 0.00 0.00 0.00 1.28
2894 3204 6.142817 GCAGCGTCCCATAGTTAAAATAATG 58.857 40.000 0.00 0.00 0.00 1.90
2895 3205 6.238648 GCAGCGTCCCATAGTTAAAATAATGT 60.239 38.462 0.00 0.00 0.00 2.71
2896 3206 7.352739 CAGCGTCCCATAGTTAAAATAATGTC 58.647 38.462 0.00 0.00 0.00 3.06
2897 3207 6.485648 AGCGTCCCATAGTTAAAATAATGTCC 59.514 38.462 0.00 0.00 0.00 4.02
2898 3208 6.485648 GCGTCCCATAGTTAAAATAATGTCCT 59.514 38.462 0.00 0.00 0.00 3.85
2899 3209 7.307811 GCGTCCCATAGTTAAAATAATGTCCTC 60.308 40.741 0.00 0.00 0.00 3.71
2900 3210 7.172703 CGTCCCATAGTTAAAATAATGTCCTCC 59.827 40.741 0.00 0.00 0.00 4.30
2901 3211 7.447545 GTCCCATAGTTAAAATAATGTCCTCCC 59.552 40.741 0.00 0.00 0.00 4.30
2902 3212 6.719829 CCCATAGTTAAAATAATGTCCTCCCC 59.280 42.308 0.00 0.00 0.00 4.81
2903 3213 7.294584 CCATAGTTAAAATAATGTCCTCCCCA 58.705 38.462 0.00 0.00 0.00 4.96
2904 3214 7.950124 CCATAGTTAAAATAATGTCCTCCCCAT 59.050 37.037 0.00 0.00 0.00 4.00
2905 3215 9.014297 CATAGTTAAAATAATGTCCTCCCCATC 57.986 37.037 0.00 0.00 0.00 3.51
2906 3216 7.226059 AGTTAAAATAATGTCCTCCCCATCT 57.774 36.000 0.00 0.00 0.00 2.90
2907 3217 7.652554 AGTTAAAATAATGTCCTCCCCATCTT 58.347 34.615 0.00 0.00 0.00 2.40
2908 3218 8.787818 AGTTAAAATAATGTCCTCCCCATCTTA 58.212 33.333 0.00 0.00 0.00 2.10
2909 3219 9.588096 GTTAAAATAATGTCCTCCCCATCTTAT 57.412 33.333 0.00 0.00 0.00 1.73
2911 3221 8.712228 AAAATAATGTCCTCCCCATCTTATTC 57.288 34.615 0.00 0.00 0.00 1.75
2912 3222 7.654287 AATAATGTCCTCCCCATCTTATTCT 57.346 36.000 0.00 0.00 0.00 2.40
2913 3223 5.574970 AATGTCCTCCCCATCTTATTCTC 57.425 43.478 0.00 0.00 0.00 2.87
2914 3224 2.965831 TGTCCTCCCCATCTTATTCTCG 59.034 50.000 0.00 0.00 0.00 4.04
2915 3225 1.971357 TCCTCCCCATCTTATTCTCGC 59.029 52.381 0.00 0.00 0.00 5.03
2916 3226 1.974236 CCTCCCCATCTTATTCTCGCT 59.026 52.381 0.00 0.00 0.00 4.93
2917 3227 2.028567 CCTCCCCATCTTATTCTCGCTC 60.029 54.545 0.00 0.00 0.00 5.03
2918 3228 1.971357 TCCCCATCTTATTCTCGCTCC 59.029 52.381 0.00 0.00 0.00 4.70
2919 3229 1.337260 CCCCATCTTATTCTCGCTCCG 60.337 57.143 0.00 0.00 0.00 4.63
2920 3230 1.337260 CCCATCTTATTCTCGCTCCGG 60.337 57.143 0.00 0.00 0.00 5.14
2921 3231 1.341531 CCATCTTATTCTCGCTCCGGT 59.658 52.381 0.00 0.00 0.00 5.28
2922 3232 2.398498 CATCTTATTCTCGCTCCGGTG 58.602 52.381 0.00 0.00 0.00 4.94
2923 3233 0.744874 TCTTATTCTCGCTCCGGTGG 59.255 55.000 0.00 0.00 0.00 4.61
2924 3234 0.460311 CTTATTCTCGCTCCGGTGGT 59.540 55.000 0.00 0.00 0.00 4.16
2925 3235 0.174845 TTATTCTCGCTCCGGTGGTG 59.825 55.000 0.00 2.64 0.00 4.17
2926 3236 2.292794 TATTCTCGCTCCGGTGGTGC 62.293 60.000 0.00 1.16 38.64 5.01
2944 3254 3.285371 ACCTAGCGTCGGTGAAGG 58.715 61.111 7.30 9.41 32.41 3.46
2945 3255 2.348888 ACCTAGCGTCGGTGAAGGG 61.349 63.158 15.72 10.71 32.41 3.95
2946 3256 2.348888 CCTAGCGTCGGTGAAGGGT 61.349 63.158 7.30 0.00 0.00 4.34
2947 3257 1.153823 CTAGCGTCGGTGAAGGGTG 60.154 63.158 7.30 0.00 0.00 4.61
2948 3258 1.874345 CTAGCGTCGGTGAAGGGTGT 61.874 60.000 7.30 0.00 0.00 4.16
2949 3259 2.149803 TAGCGTCGGTGAAGGGTGTG 62.150 60.000 7.30 0.00 0.00 3.82
2950 3260 2.420043 CGTCGGTGAAGGGTGTGT 59.580 61.111 0.00 0.00 0.00 3.72
2951 3261 1.954146 CGTCGGTGAAGGGTGTGTG 60.954 63.158 0.00 0.00 0.00 3.82
2952 3262 1.145377 GTCGGTGAAGGGTGTGTGT 59.855 57.895 0.00 0.00 0.00 3.72
2953 3263 1.145156 TCGGTGAAGGGTGTGTGTG 59.855 57.895 0.00 0.00 0.00 3.82
2954 3264 2.542907 CGGTGAAGGGTGTGTGTGC 61.543 63.158 0.00 0.00 0.00 4.57
2955 3265 1.453015 GGTGAAGGGTGTGTGTGCA 60.453 57.895 0.00 0.00 0.00 4.57
2956 3266 1.034838 GGTGAAGGGTGTGTGTGCAA 61.035 55.000 0.00 0.00 0.00 4.08
2957 3267 0.381801 GTGAAGGGTGTGTGTGCAAG 59.618 55.000 0.00 0.00 0.00 4.01
2958 3268 0.034574 TGAAGGGTGTGTGTGCAAGT 60.035 50.000 0.00 0.00 0.00 3.16
2959 3269 0.381801 GAAGGGTGTGTGTGCAAGTG 59.618 55.000 0.00 0.00 0.00 3.16
2960 3270 0.323360 AAGGGTGTGTGTGCAAGTGT 60.323 50.000 0.00 0.00 0.00 3.55
2961 3271 1.031571 AGGGTGTGTGTGCAAGTGTG 61.032 55.000 0.00 0.00 0.00 3.82
2962 3272 1.312371 GGGTGTGTGTGCAAGTGTGT 61.312 55.000 0.00 0.00 0.00 3.72
2963 3273 0.098728 GGTGTGTGTGCAAGTGTGTC 59.901 55.000 0.00 0.00 0.00 3.67
2964 3274 1.086696 GTGTGTGTGCAAGTGTGTCT 58.913 50.000 0.00 0.00 0.00 3.41
2965 3275 1.468520 GTGTGTGTGCAAGTGTGTCTT 59.531 47.619 0.00 0.00 36.75 3.01
2966 3276 2.095263 GTGTGTGTGCAAGTGTGTCTTT 60.095 45.455 0.00 0.00 33.63 2.52
2967 3277 2.095314 TGTGTGTGCAAGTGTGTCTTTG 60.095 45.455 0.00 0.00 33.63 2.77
2968 3278 1.472082 TGTGTGCAAGTGTGTCTTTGG 59.528 47.619 0.00 0.00 33.63 3.28
2969 3279 1.472480 GTGTGCAAGTGTGTCTTTGGT 59.528 47.619 0.00 0.00 33.63 3.67
2970 3280 1.472082 TGTGCAAGTGTGTCTTTGGTG 59.528 47.619 0.00 0.00 33.63 4.17
2971 3281 1.102154 TGCAAGTGTGTCTTTGGTGG 58.898 50.000 0.00 0.00 33.63 4.61
2972 3282 0.385390 GCAAGTGTGTCTTTGGTGGG 59.615 55.000 0.00 0.00 33.63 4.61
2973 3283 1.762708 CAAGTGTGTCTTTGGTGGGT 58.237 50.000 0.00 0.00 33.63 4.51
2974 3284 1.676006 CAAGTGTGTCTTTGGTGGGTC 59.324 52.381 0.00 0.00 33.63 4.46
2975 3285 1.213296 AGTGTGTCTTTGGTGGGTCT 58.787 50.000 0.00 0.00 0.00 3.85
2976 3286 1.564348 AGTGTGTCTTTGGTGGGTCTT 59.436 47.619 0.00 0.00 0.00 3.01
2977 3287 1.947456 GTGTGTCTTTGGTGGGTCTTC 59.053 52.381 0.00 0.00 0.00 2.87
2978 3288 1.843851 TGTGTCTTTGGTGGGTCTTCT 59.156 47.619 0.00 0.00 0.00 2.85
2979 3289 2.241176 TGTGTCTTTGGTGGGTCTTCTT 59.759 45.455 0.00 0.00 0.00 2.52
2980 3290 2.618709 GTGTCTTTGGTGGGTCTTCTTG 59.381 50.000 0.00 0.00 0.00 3.02
2981 3291 2.230660 GTCTTTGGTGGGTCTTCTTGG 58.769 52.381 0.00 0.00 0.00 3.61
2982 3292 2.131854 TCTTTGGTGGGTCTTCTTGGA 58.868 47.619 0.00 0.00 0.00 3.53
2983 3293 2.716424 TCTTTGGTGGGTCTTCTTGGAT 59.284 45.455 0.00 0.00 0.00 3.41
2984 3294 2.879103 TTGGTGGGTCTTCTTGGATC 57.121 50.000 0.00 0.00 0.00 3.36
2985 3295 0.991920 TGGTGGGTCTTCTTGGATCC 59.008 55.000 4.20 4.20 37.04 3.36
2986 3296 0.991920 GGTGGGTCTTCTTGGATCCA 59.008 55.000 11.44 11.44 43.45 3.41
2987 3297 1.566231 GGTGGGTCTTCTTGGATCCAT 59.434 52.381 17.06 0.00 46.60 3.41
2988 3298 2.024941 GGTGGGTCTTCTTGGATCCATT 60.025 50.000 17.06 0.00 46.60 3.16
2989 3299 3.282885 GTGGGTCTTCTTGGATCCATTC 58.717 50.000 17.06 2.83 46.60 2.67
2990 3300 2.918934 TGGGTCTTCTTGGATCCATTCA 59.081 45.455 17.06 0.00 41.11 2.57
2991 3301 3.333381 TGGGTCTTCTTGGATCCATTCAA 59.667 43.478 17.06 7.76 41.11 2.69
2992 3302 4.202663 TGGGTCTTCTTGGATCCATTCAAA 60.203 41.667 17.06 6.84 41.11 2.69
2993 3303 4.400567 GGGTCTTCTTGGATCCATTCAAAG 59.599 45.833 17.06 15.67 36.80 2.77
2994 3304 5.012893 GGTCTTCTTGGATCCATTCAAAGT 58.987 41.667 17.06 0.00 36.81 2.66
2995 3305 5.478332 GGTCTTCTTGGATCCATTCAAAGTT 59.522 40.000 17.06 0.00 36.81 2.66
2996 3306 6.349694 GGTCTTCTTGGATCCATTCAAAGTTC 60.350 42.308 17.06 12.71 36.81 3.01
2997 3307 5.412594 TCTTCTTGGATCCATTCAAAGTTCG 59.587 40.000 17.06 3.16 36.81 3.95
2998 3308 4.651778 TCTTGGATCCATTCAAAGTTCGT 58.348 39.130 17.06 0.00 36.81 3.85
2999 3309 4.695455 TCTTGGATCCATTCAAAGTTCGTC 59.305 41.667 17.06 0.00 36.81 4.20
3000 3310 4.286297 TGGATCCATTCAAAGTTCGTCT 57.714 40.909 11.44 0.00 0.00 4.18
3001 3311 4.253685 TGGATCCATTCAAAGTTCGTCTC 58.746 43.478 11.44 0.00 0.00 3.36
3002 3312 4.253685 GGATCCATTCAAAGTTCGTCTCA 58.746 43.478 6.95 0.00 0.00 3.27
3003 3313 4.093556 GGATCCATTCAAAGTTCGTCTCAC 59.906 45.833 6.95 0.00 0.00 3.51
3004 3314 4.066646 TCCATTCAAAGTTCGTCTCACA 57.933 40.909 0.00 0.00 0.00 3.58
3005 3315 4.641396 TCCATTCAAAGTTCGTCTCACAT 58.359 39.130 0.00 0.00 0.00 3.21
3006 3316 4.452114 TCCATTCAAAGTTCGTCTCACATG 59.548 41.667 0.00 0.00 0.00 3.21
3007 3317 4.452114 CCATTCAAAGTTCGTCTCACATGA 59.548 41.667 0.00 0.00 0.00 3.07
3008 3318 5.377358 CATTCAAAGTTCGTCTCACATGAC 58.623 41.667 0.00 0.00 0.00 3.06
3009 3319 3.390135 TCAAAGTTCGTCTCACATGACC 58.610 45.455 0.00 0.00 33.70 4.02
3010 3320 2.457366 AAGTTCGTCTCACATGACCC 57.543 50.000 0.00 0.00 33.70 4.46
3011 3321 0.243907 AGTTCGTCTCACATGACCCG 59.756 55.000 0.00 0.00 33.70 5.28
3012 3322 0.038526 GTTCGTCTCACATGACCCGT 60.039 55.000 0.00 0.00 33.70 5.28
3013 3323 0.242825 TTCGTCTCACATGACCCGTC 59.757 55.000 0.00 0.00 33.70 4.79
3014 3324 0.608308 TCGTCTCACATGACCCGTCT 60.608 55.000 0.00 0.00 33.70 4.18
3015 3325 0.456824 CGTCTCACATGACCCGTCTG 60.457 60.000 0.00 0.00 33.70 3.51
3016 3326 0.888619 GTCTCACATGACCCGTCTGA 59.111 55.000 0.00 0.00 0.00 3.27
3017 3327 1.272490 GTCTCACATGACCCGTCTGAA 59.728 52.381 0.00 0.00 0.00 3.02
3018 3328 2.093973 GTCTCACATGACCCGTCTGAAT 60.094 50.000 0.00 0.00 0.00 2.57
3019 3329 2.567169 TCTCACATGACCCGTCTGAATT 59.433 45.455 0.00 0.00 0.00 2.17
3020 3330 2.932614 CTCACATGACCCGTCTGAATTC 59.067 50.000 0.00 0.00 0.00 2.17
3021 3331 2.301583 TCACATGACCCGTCTGAATTCA 59.698 45.455 8.12 8.12 0.00 2.57
3022 3332 2.674852 CACATGACCCGTCTGAATTCAG 59.325 50.000 26.56 26.56 45.08 3.02
3023 3333 2.303022 ACATGACCCGTCTGAATTCAGT 59.697 45.455 29.80 15.00 44.12 3.41
3024 3334 2.743636 TGACCCGTCTGAATTCAGTC 57.256 50.000 29.80 24.35 44.12 3.51
3028 3338 2.373938 CGTCTGAATTCAGTCGCCC 58.626 57.895 31.64 16.98 45.07 6.13
3029 3339 1.084370 CGTCTGAATTCAGTCGCCCC 61.084 60.000 31.64 15.64 45.07 5.80
3030 3340 0.250513 GTCTGAATTCAGTCGCCCCT 59.749 55.000 29.80 0.00 44.12 4.79
3031 3341 0.537188 TCTGAATTCAGTCGCCCCTC 59.463 55.000 29.80 0.00 44.12 4.30
3032 3342 0.807667 CTGAATTCAGTCGCCCCTCG 60.808 60.000 24.65 0.00 39.09 4.63
3033 3343 1.218316 GAATTCAGTCGCCCCTCGT 59.782 57.895 0.00 0.00 39.67 4.18
3034 3344 0.391263 GAATTCAGTCGCCCCTCGTT 60.391 55.000 0.00 0.00 39.67 3.85
3035 3345 0.036306 AATTCAGTCGCCCCTCGTTT 59.964 50.000 0.00 0.00 39.67 3.60
3036 3346 0.391263 ATTCAGTCGCCCCTCGTTTC 60.391 55.000 0.00 0.00 39.67 2.78
3037 3347 2.758770 TTCAGTCGCCCCTCGTTTCG 62.759 60.000 0.00 0.00 39.67 3.46
3038 3348 3.300765 AGTCGCCCCTCGTTTCGT 61.301 61.111 0.00 0.00 39.67 3.85
3039 3349 2.356673 GTCGCCCCTCGTTTCGTT 60.357 61.111 0.00 0.00 39.67 3.85
3040 3350 2.356553 TCGCCCCTCGTTTCGTTG 60.357 61.111 0.00 0.00 39.67 4.10
3041 3351 3.419759 CGCCCCTCGTTTCGTTGG 61.420 66.667 0.00 0.00 0.00 3.77
3042 3352 2.281276 GCCCCTCGTTTCGTTGGT 60.281 61.111 0.00 0.00 0.00 3.67
3043 3353 2.613506 GCCCCTCGTTTCGTTGGTG 61.614 63.158 0.00 0.00 0.00 4.17
3044 3354 1.227734 CCCCTCGTTTCGTTGGTGT 60.228 57.895 0.00 0.00 0.00 4.16
3045 3355 1.503818 CCCCTCGTTTCGTTGGTGTG 61.504 60.000 0.00 0.00 0.00 3.82
3046 3356 1.278637 CCTCGTTTCGTTGGTGTGC 59.721 57.895 0.00 0.00 0.00 4.57
3047 3357 1.278637 CTCGTTTCGTTGGTGTGCC 59.721 57.895 0.00 0.00 0.00 5.01
3048 3358 2.113131 CTCGTTTCGTTGGTGTGCCC 62.113 60.000 0.00 0.00 0.00 5.36
3049 3359 2.184167 CGTTTCGTTGGTGTGCCCT 61.184 57.895 0.00 0.00 0.00 5.19
3050 3360 1.720694 CGTTTCGTTGGTGTGCCCTT 61.721 55.000 0.00 0.00 0.00 3.95
3051 3361 0.458260 GTTTCGTTGGTGTGCCCTTT 59.542 50.000 0.00 0.00 0.00 3.11
3052 3362 1.134936 GTTTCGTTGGTGTGCCCTTTT 60.135 47.619 0.00 0.00 0.00 2.27
3053 3363 0.457851 TTCGTTGGTGTGCCCTTTTG 59.542 50.000 0.00 0.00 0.00 2.44
3054 3364 0.394488 TCGTTGGTGTGCCCTTTTGA 60.394 50.000 0.00 0.00 0.00 2.69
3055 3365 0.673437 CGTTGGTGTGCCCTTTTGAT 59.327 50.000 0.00 0.00 0.00 2.57
3056 3366 1.335872 CGTTGGTGTGCCCTTTTGATC 60.336 52.381 0.00 0.00 0.00 2.92
3057 3367 1.963515 GTTGGTGTGCCCTTTTGATCT 59.036 47.619 0.00 0.00 0.00 2.75
3058 3368 3.153919 GTTGGTGTGCCCTTTTGATCTA 58.846 45.455 0.00 0.00 0.00 1.98
3059 3369 2.790433 TGGTGTGCCCTTTTGATCTAC 58.210 47.619 0.00 0.00 0.00 2.59
3060 3370 1.737793 GGTGTGCCCTTTTGATCTACG 59.262 52.381 0.00 0.00 0.00 3.51
3061 3371 1.130561 GTGTGCCCTTTTGATCTACGC 59.869 52.381 0.00 0.00 0.00 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 5.295292 ACAAGAATCATATTCTTCCAGCGTG 59.705 40.000 11.07 3.65 36.69 5.34
111 112 2.604686 TCTTCCTCTGCCGGCAGT 60.605 61.111 45.86 0.00 43.96 4.40
116 117 0.539051 ATCCAACTCTTCCTCTGCCG 59.461 55.000 0.00 0.00 0.00 5.69
161 162 3.123620 GGCAACAGAGCTGGCTCG 61.124 66.667 15.59 12.96 46.90 5.03
224 225 3.270877 GTCATTTACCAGCATCTCGGTT 58.729 45.455 0.00 0.00 36.69 4.44
239 240 4.335594 GCAGTTTCCGCTATTAGGTCATTT 59.664 41.667 0.00 0.00 0.00 2.32
266 267 4.711949 CTTGCCAGGCCTCGCAGT 62.712 66.667 24.50 0.00 36.14 4.40
301 302 5.238432 ACATCACAATTTTCTTCAGTACGCA 59.762 36.000 0.00 0.00 0.00 5.24
318 319 2.779755 ACGCCTCCATTAACATCACA 57.220 45.000 0.00 0.00 0.00 3.58
334 335 5.862323 TCATTACACTCTTCTGTTAGAACGC 59.138 40.000 0.00 0.00 29.89 4.84
350 351 6.678900 GCCATCTTTCCTTCACATCATTACAC 60.679 42.308 0.00 0.00 0.00 2.90
362 363 0.392998 TCTGCCGCCATCTTTCCTTC 60.393 55.000 0.00 0.00 0.00 3.46
371 372 1.457346 CTTTTCTTCTCTGCCGCCAT 58.543 50.000 0.00 0.00 0.00 4.40
377 378 1.462670 CGTCCAGCTTTTCTTCTCTGC 59.537 52.381 0.00 0.00 0.00 4.26
403 404 7.526526 ATTGTCGTGTCAATCTAAGGGAACTTA 60.527 37.037 0.00 0.00 41.37 2.24
431 434 5.646692 TGCTTAATAGTTTATCCTGCCCT 57.353 39.130 0.00 0.00 0.00 5.19
453 456 6.984474 CACTAACTTGGTTATACATCGGTCAT 59.016 38.462 0.00 0.00 0.00 3.06
469 472 9.677567 AAAACTGCAAACATATACACTAACTTG 57.322 29.630 0.00 0.00 0.00 3.16
497 500 4.009675 GAGGAATGCTACACCATCAACAA 58.990 43.478 0.00 0.00 0.00 2.83
536 539 6.489022 CAGACATGTTCACCCATAATCATCAT 59.511 38.462 0.00 0.00 0.00 2.45
538 541 6.057533 TCAGACATGTTCACCCATAATCATC 58.942 40.000 0.00 0.00 0.00 2.92
549 552 7.038048 TCAACATCTATCTCAGACATGTTCAC 58.962 38.462 0.00 0.00 35.31 3.18
553 556 6.038985 CGTTCAACATCTATCTCAGACATGT 58.961 40.000 0.00 0.00 35.62 3.21
576 581 6.607689 ACAACATCAACACAATTATACACCG 58.392 36.000 0.00 0.00 0.00 4.94
621 626 5.191722 ACCAAAGGAATGATAGCTTCTGGTA 59.808 40.000 0.00 0.00 0.00 3.25
638 643 3.444742 TGCATATCAAGCTGAACCAAAGG 59.555 43.478 0.00 0.00 0.00 3.11
650 655 6.906659 AGTTCAGAACAAACTGCATATCAAG 58.093 36.000 15.85 0.00 35.68 3.02
664 669 2.575532 CTGCCCAGAAAGTTCAGAACA 58.424 47.619 15.85 0.00 0.00 3.18
665 670 1.268079 GCTGCCCAGAAAGTTCAGAAC 59.732 52.381 5.00 5.00 0.00 3.01
666 671 1.143684 AGCTGCCCAGAAAGTTCAGAA 59.856 47.619 0.00 0.00 0.00 3.02
667 672 0.767375 AGCTGCCCAGAAAGTTCAGA 59.233 50.000 0.00 0.00 0.00 3.27
790 826 1.005340 GCTTCATCTGGTCAGCTTCG 58.995 55.000 0.00 0.00 0.00 3.79
808 844 1.674962 GGTTCAGAGATTGGCATCTGC 59.325 52.381 10.95 0.00 40.14 4.26
833 869 4.099419 GGATGAACTCACCCACAAGTTTTT 59.901 41.667 0.00 0.00 35.90 1.94
1120 1156 4.200283 CTGAGGTCGAGGCGAGGC 62.200 72.222 0.00 0.00 36.23 4.70
1122 1158 4.200283 GGCTGAGGTCGAGGCGAG 62.200 72.222 0.00 0.00 36.23 5.03
1207 1243 1.060244 AGCCTGGAGGGGGATATCTTT 60.060 52.381 0.00 0.00 35.18 2.52
1525 1561 3.499737 CTGGTTGCCGATGTCCGC 61.500 66.667 0.00 0.00 36.84 5.54
1698 1734 1.635663 CCATCGCCGAGTTGTTCACC 61.636 60.000 0.00 0.00 0.00 4.02
1797 1833 2.270205 CGCTCCTCCTTGCCATGT 59.730 61.111 0.00 0.00 0.00 3.21
2030 2066 3.775654 CTTCCGCGCCTTCCTCCT 61.776 66.667 0.00 0.00 0.00 3.69
2081 2117 2.865551 ACAAAAACCGTAGTACACACCG 59.134 45.455 0.38 0.00 0.00 4.94
2082 2118 3.546616 GCACAAAAACCGTAGTACACACC 60.547 47.826 0.38 0.00 0.00 4.16
2084 2120 3.268330 TGCACAAAAACCGTAGTACACA 58.732 40.909 0.38 0.00 0.00 3.72
2086 2122 4.959596 TTTGCACAAAAACCGTAGTACA 57.040 36.364 0.38 0.00 0.00 2.90
2128 2184 8.318412 TGATCTTTTACCAAGTCAGCAGTAATA 58.682 33.333 0.00 0.00 0.00 0.98
2138 2194 5.391416 GCAGCTTCTGATCTTTTACCAAGTC 60.391 44.000 0.00 0.00 32.44 3.01
2168 2247 2.159338 GCTCAATGCCGTGACATGAAAT 60.159 45.455 0.00 0.00 35.15 2.17
2177 2256 1.063616 CATTCTGAGCTCAATGCCGTG 59.936 52.381 18.85 4.10 44.23 4.94
2178 2257 1.339438 ACATTCTGAGCTCAATGCCGT 60.339 47.619 22.69 12.32 44.23 5.68
2179 2258 1.329906 GACATTCTGAGCTCAATGCCG 59.670 52.381 22.69 10.31 44.23 5.69
2180 2259 2.097142 GTGACATTCTGAGCTCAATGCC 59.903 50.000 22.69 15.44 44.23 4.40
2181 2260 2.097142 GGTGACATTCTGAGCTCAATGC 59.903 50.000 22.69 16.96 43.29 3.56
2182 2261 3.340928 TGGTGACATTCTGAGCTCAATG 58.659 45.455 21.62 21.62 36.28 2.82
2183 2262 3.708403 TGGTGACATTCTGAGCTCAAT 57.292 42.857 18.85 6.46 33.40 2.57
2198 2277 3.402110 CTGTAGTGCAAAGTCATGGTGA 58.598 45.455 0.00 0.00 0.00 4.02
2199 2278 2.095567 GCTGTAGTGCAAAGTCATGGTG 60.096 50.000 0.00 0.00 0.00 4.17
2201 2280 1.470098 GGCTGTAGTGCAAAGTCATGG 59.530 52.381 0.00 0.00 34.04 3.66
2202 2281 2.417933 GAGGCTGTAGTGCAAAGTCATG 59.582 50.000 0.00 0.00 34.04 3.07
2203 2282 2.616510 GGAGGCTGTAGTGCAAAGTCAT 60.617 50.000 0.00 0.00 34.04 3.06
2204 2283 1.270839 GGAGGCTGTAGTGCAAAGTCA 60.271 52.381 0.00 0.00 34.04 3.41
2205 2284 1.270839 TGGAGGCTGTAGTGCAAAGTC 60.271 52.381 0.00 0.00 34.04 3.01
2207 2286 1.446907 CTGGAGGCTGTAGTGCAAAG 58.553 55.000 0.00 0.00 34.04 2.77
2212 2291 0.108424 GTCTGCTGGAGGCTGTAGTG 60.108 60.000 0.00 0.00 42.39 2.74
2213 2292 0.542938 TGTCTGCTGGAGGCTGTAGT 60.543 55.000 1.71 0.00 42.39 2.73
2214 2293 0.108424 GTGTCTGCTGGAGGCTGTAG 60.108 60.000 1.71 0.00 42.39 2.74
2259 2532 5.590259 AGGATATCCCAACGACAATTCTTTG 59.410 40.000 18.56 0.00 36.75 2.77
2271 2544 3.737850 CTCAGCAAGAGGATATCCCAAC 58.262 50.000 18.56 10.20 40.84 3.77
2302 2606 4.134379 TCTCCATTTCTCTGCTGCTAAG 57.866 45.455 0.00 0.00 0.00 2.18
2443 2748 2.415857 AGAGACGCTACAGTTCAGTACG 59.584 50.000 0.00 0.00 0.00 3.67
2448 2753 2.885266 ACAAGAGAGACGCTACAGTTCA 59.115 45.455 0.00 0.00 0.00 3.18
2450 2755 2.608261 GCACAAGAGAGACGCTACAGTT 60.608 50.000 0.00 0.00 0.00 3.16
2453 2758 1.200252 GAGCACAAGAGAGACGCTACA 59.800 52.381 0.00 0.00 31.86 2.74
2456 2761 0.897863 AGGAGCACAAGAGAGACGCT 60.898 55.000 0.00 0.00 35.14 5.07
2502 2812 9.331282 GTGGATTGCTACTCATTTATACTTTCT 57.669 33.333 0.00 0.00 0.00 2.52
2535 2845 9.903682 GCATGATAGTAGCATCAAATAAAATGT 57.096 29.630 0.00 0.00 38.39 2.71
2600 2910 2.364002 GGCCACCTTGCAGAAACTAAAA 59.636 45.455 0.00 0.00 0.00 1.52
2606 2916 2.192861 CACGGCCACCTTGCAGAAA 61.193 57.895 2.24 0.00 0.00 2.52
2607 2917 2.594303 CACGGCCACCTTGCAGAA 60.594 61.111 2.24 0.00 0.00 3.02
2608 2918 2.616797 TTTCACGGCCACCTTGCAGA 62.617 55.000 2.24 0.00 0.00 4.26
2609 2919 1.733402 TTTTCACGGCCACCTTGCAG 61.733 55.000 2.24 0.00 0.00 4.41
2610 2920 1.112315 ATTTTCACGGCCACCTTGCA 61.112 50.000 2.24 0.00 0.00 4.08
2611 2921 0.885196 TATTTTCACGGCCACCTTGC 59.115 50.000 2.24 0.00 0.00 4.01
2612 2922 2.095263 CACTATTTTCACGGCCACCTTG 60.095 50.000 2.24 0.00 0.00 3.61
2613 2923 2.159382 CACTATTTTCACGGCCACCTT 58.841 47.619 2.24 0.00 0.00 3.50
2614 2924 1.821216 CACTATTTTCACGGCCACCT 58.179 50.000 2.24 0.00 0.00 4.00
2615 2925 0.170339 GCACTATTTTCACGGCCACC 59.830 55.000 2.24 0.00 0.00 4.61
2616 2926 0.878416 TGCACTATTTTCACGGCCAC 59.122 50.000 2.24 0.00 0.00 5.01
2617 2927 1.742831 GATGCACTATTTTCACGGCCA 59.257 47.619 2.24 0.00 0.00 5.36
2618 2928 1.065551 GGATGCACTATTTTCACGGCC 59.934 52.381 0.00 0.00 0.00 6.13
2619 2929 1.065551 GGGATGCACTATTTTCACGGC 59.934 52.381 0.00 0.00 0.00 5.68
2620 2930 1.330521 CGGGATGCACTATTTTCACGG 59.669 52.381 0.00 0.00 31.57 4.94
2621 2931 2.030457 GTCGGGATGCACTATTTTCACG 59.970 50.000 0.97 0.97 36.37 4.35
2622 2932 2.354821 GGTCGGGATGCACTATTTTCAC 59.645 50.000 0.00 0.00 0.00 3.18
2623 2933 2.238646 AGGTCGGGATGCACTATTTTCA 59.761 45.455 0.00 0.00 0.00 2.69
2624 2934 2.919228 AGGTCGGGATGCACTATTTTC 58.081 47.619 0.00 0.00 0.00 2.29
2625 2935 4.080526 ACTTAGGTCGGGATGCACTATTTT 60.081 41.667 0.00 0.00 0.00 1.82
2626 2936 3.454812 ACTTAGGTCGGGATGCACTATTT 59.545 43.478 0.00 0.00 0.00 1.40
2627 2937 3.039011 ACTTAGGTCGGGATGCACTATT 58.961 45.455 0.00 0.00 0.00 1.73
2628 2938 2.679082 ACTTAGGTCGGGATGCACTAT 58.321 47.619 0.00 0.00 0.00 2.12
2629 2939 2.154567 ACTTAGGTCGGGATGCACTA 57.845 50.000 0.00 0.00 0.00 2.74
2630 2940 2.032620 CTACTTAGGTCGGGATGCACT 58.967 52.381 0.00 0.00 0.00 4.40
2631 2941 1.538419 GCTACTTAGGTCGGGATGCAC 60.538 57.143 0.00 0.00 0.00 4.57
2632 2942 0.750850 GCTACTTAGGTCGGGATGCA 59.249 55.000 0.00 0.00 0.00 3.96
2633 2943 0.750850 TGCTACTTAGGTCGGGATGC 59.249 55.000 0.00 0.00 0.00 3.91
2634 2944 1.269831 GCTGCTACTTAGGTCGGGATG 60.270 57.143 0.00 0.00 0.00 3.51
2635 2945 1.041437 GCTGCTACTTAGGTCGGGAT 58.959 55.000 0.00 0.00 0.00 3.85
2636 2946 0.323999 TGCTGCTACTTAGGTCGGGA 60.324 55.000 0.00 0.00 0.00 5.14
2637 2947 0.179108 GTGCTGCTACTTAGGTCGGG 60.179 60.000 0.00 0.00 0.00 5.14
2638 2948 0.530744 TGTGCTGCTACTTAGGTCGG 59.469 55.000 0.00 0.00 0.00 4.79
2639 2949 2.363788 TTGTGCTGCTACTTAGGTCG 57.636 50.000 0.00 0.00 0.00 4.79
2640 2950 5.629079 AATTTTGTGCTGCTACTTAGGTC 57.371 39.130 0.00 0.00 0.00 3.85
2641 2951 4.154195 CGAATTTTGTGCTGCTACTTAGGT 59.846 41.667 0.00 0.00 0.00 3.08
2642 2952 4.391830 TCGAATTTTGTGCTGCTACTTAGG 59.608 41.667 0.00 0.00 0.00 2.69
2643 2953 5.107104 TGTCGAATTTTGTGCTGCTACTTAG 60.107 40.000 0.00 0.00 0.00 2.18
2644 2954 4.752604 TGTCGAATTTTGTGCTGCTACTTA 59.247 37.500 0.00 0.00 0.00 2.24
2645 2955 3.563808 TGTCGAATTTTGTGCTGCTACTT 59.436 39.130 0.00 0.00 0.00 2.24
2646 2956 3.058914 GTGTCGAATTTTGTGCTGCTACT 60.059 43.478 0.00 0.00 0.00 2.57
2647 2957 3.226347 GTGTCGAATTTTGTGCTGCTAC 58.774 45.455 0.00 0.00 0.00 3.58
2648 2958 2.225491 GGTGTCGAATTTTGTGCTGCTA 59.775 45.455 0.00 0.00 0.00 3.49
2649 2959 1.001378 GGTGTCGAATTTTGTGCTGCT 60.001 47.619 0.00 0.00 0.00 4.24
2650 2960 1.408422 GGTGTCGAATTTTGTGCTGC 58.592 50.000 0.00 0.00 0.00 5.25
2651 2961 1.336440 TGGGTGTCGAATTTTGTGCTG 59.664 47.619 0.00 0.00 0.00 4.41
2652 2962 1.336755 GTGGGTGTCGAATTTTGTGCT 59.663 47.619 0.00 0.00 0.00 4.40
2653 2963 1.066303 TGTGGGTGTCGAATTTTGTGC 59.934 47.619 0.00 0.00 0.00 4.57
2654 2964 3.641437 ATGTGGGTGTCGAATTTTGTG 57.359 42.857 0.00 0.00 0.00 3.33
2655 2965 4.664150 AAATGTGGGTGTCGAATTTTGT 57.336 36.364 0.00 0.00 0.00 2.83
2656 2966 7.650834 ATTAAAATGTGGGTGTCGAATTTTG 57.349 32.000 10.50 0.00 33.67 2.44
2657 2967 8.361139 TGTATTAAAATGTGGGTGTCGAATTTT 58.639 29.630 6.86 6.86 35.32 1.82
2658 2968 7.887381 TGTATTAAAATGTGGGTGTCGAATTT 58.113 30.769 0.00 0.00 0.00 1.82
2659 2969 7.455641 TGTATTAAAATGTGGGTGTCGAATT 57.544 32.000 0.00 0.00 0.00 2.17
2660 2970 7.455641 TTGTATTAAAATGTGGGTGTCGAAT 57.544 32.000 0.00 0.00 0.00 3.34
2661 2971 6.879276 TTGTATTAAAATGTGGGTGTCGAA 57.121 33.333 0.00 0.00 0.00 3.71
2662 2972 6.655425 TGATTGTATTAAAATGTGGGTGTCGA 59.345 34.615 0.00 0.00 0.00 4.20
2663 2973 6.847400 TGATTGTATTAAAATGTGGGTGTCG 58.153 36.000 0.00 0.00 0.00 4.35
2664 2974 7.920682 GGATGATTGTATTAAAATGTGGGTGTC 59.079 37.037 0.00 0.00 0.00 3.67
2665 2975 7.398618 TGGATGATTGTATTAAAATGTGGGTGT 59.601 33.333 0.00 0.00 0.00 4.16
2666 2976 7.780064 TGGATGATTGTATTAAAATGTGGGTG 58.220 34.615 0.00 0.00 0.00 4.61
2667 2977 7.969690 TGGATGATTGTATTAAAATGTGGGT 57.030 32.000 0.00 0.00 0.00 4.51
2668 2978 8.256605 TGTTGGATGATTGTATTAAAATGTGGG 58.743 33.333 0.00 0.00 0.00 4.61
2669 2979 9.650539 TTGTTGGATGATTGTATTAAAATGTGG 57.349 29.630 0.00 0.00 0.00 4.17
2671 2981 9.369904 GCTTGTTGGATGATTGTATTAAAATGT 57.630 29.630 0.00 0.00 0.00 2.71
2672 2982 9.368674 TGCTTGTTGGATGATTGTATTAAAATG 57.631 29.630 0.00 0.00 0.00 2.32
2673 2983 9.941325 TTGCTTGTTGGATGATTGTATTAAAAT 57.059 25.926 0.00 0.00 0.00 1.82
2674 2984 9.770097 TTTGCTTGTTGGATGATTGTATTAAAA 57.230 25.926 0.00 0.00 0.00 1.52
2675 2985 9.421806 CTTTGCTTGTTGGATGATTGTATTAAA 57.578 29.630 0.00 0.00 0.00 1.52
2676 2986 8.801299 TCTTTGCTTGTTGGATGATTGTATTAA 58.199 29.630 0.00 0.00 0.00 1.40
2677 2987 8.347004 TCTTTGCTTGTTGGATGATTGTATTA 57.653 30.769 0.00 0.00 0.00 0.98
2678 2988 7.177216 TCTCTTTGCTTGTTGGATGATTGTATT 59.823 33.333 0.00 0.00 0.00 1.89
2679 2989 6.660521 TCTCTTTGCTTGTTGGATGATTGTAT 59.339 34.615 0.00 0.00 0.00 2.29
2680 2990 6.003326 TCTCTTTGCTTGTTGGATGATTGTA 58.997 36.000 0.00 0.00 0.00 2.41
2681 2991 4.828939 TCTCTTTGCTTGTTGGATGATTGT 59.171 37.500 0.00 0.00 0.00 2.71
2682 2992 5.381174 TCTCTTTGCTTGTTGGATGATTG 57.619 39.130 0.00 0.00 0.00 2.67
2683 2993 4.461781 CCTCTCTTTGCTTGTTGGATGATT 59.538 41.667 0.00 0.00 0.00 2.57
2684 2994 4.015084 CCTCTCTTTGCTTGTTGGATGAT 58.985 43.478 0.00 0.00 0.00 2.45
2685 2995 3.072915 TCCTCTCTTTGCTTGTTGGATGA 59.927 43.478 0.00 0.00 0.00 2.92
2686 2996 3.415212 TCCTCTCTTTGCTTGTTGGATG 58.585 45.455 0.00 0.00 0.00 3.51
2687 2997 3.795688 TCCTCTCTTTGCTTGTTGGAT 57.204 42.857 0.00 0.00 0.00 3.41
2688 2998 3.576078 TTCCTCTCTTTGCTTGTTGGA 57.424 42.857 0.00 0.00 0.00 3.53
2689 2999 3.885297 TCTTTCCTCTCTTTGCTTGTTGG 59.115 43.478 0.00 0.00 0.00 3.77
2690 3000 5.505173 TTCTTTCCTCTCTTTGCTTGTTG 57.495 39.130 0.00 0.00 0.00 3.33
2691 3001 6.721704 AATTCTTTCCTCTCTTTGCTTGTT 57.278 33.333 0.00 0.00 0.00 2.83
2692 3002 6.432472 CCTAATTCTTTCCTCTCTTTGCTTGT 59.568 38.462 0.00 0.00 0.00 3.16
2693 3003 6.127786 CCCTAATTCTTTCCTCTCTTTGCTTG 60.128 42.308 0.00 0.00 0.00 4.01
2694 3004 5.948758 CCCTAATTCTTTCCTCTCTTTGCTT 59.051 40.000 0.00 0.00 0.00 3.91
2695 3005 5.014649 ACCCTAATTCTTTCCTCTCTTTGCT 59.985 40.000 0.00 0.00 0.00 3.91
2696 3006 5.257262 ACCCTAATTCTTTCCTCTCTTTGC 58.743 41.667 0.00 0.00 0.00 3.68
2697 3007 7.094162 GGAAACCCTAATTCTTTCCTCTCTTTG 60.094 40.741 0.00 0.00 39.87 2.77
2698 3008 6.948886 GGAAACCCTAATTCTTTCCTCTCTTT 59.051 38.462 0.00 0.00 39.87 2.52
2699 3009 6.045577 TGGAAACCCTAATTCTTTCCTCTCTT 59.954 38.462 9.26 0.00 42.39 2.85
2700 3010 5.551977 TGGAAACCCTAATTCTTTCCTCTCT 59.448 40.000 9.26 0.00 42.39 3.10
2701 3011 5.648526 GTGGAAACCCTAATTCTTTCCTCTC 59.351 44.000 9.26 0.00 42.39 3.20
2702 3012 5.516768 GGTGGAAACCCTAATTCTTTCCTCT 60.517 44.000 9.26 0.00 42.39 3.69
2703 3013 4.705507 GGTGGAAACCCTAATTCTTTCCTC 59.294 45.833 9.26 6.09 42.39 3.71
2704 3014 4.510386 GGGTGGAAACCCTAATTCTTTCCT 60.510 45.833 6.68 0.00 46.39 3.36
2705 3015 3.767673 GGGTGGAAACCCTAATTCTTTCC 59.232 47.826 6.68 0.00 46.39 3.13
2758 3068 2.673523 CCCAAGAGCCACCAGAGG 59.326 66.667 0.00 0.00 0.00 3.69
2759 3069 2.673523 CCCCAAGAGCCACCAGAG 59.326 66.667 0.00 0.00 0.00 3.35
2760 3070 3.650950 GCCCCAAGAGCCACCAGA 61.651 66.667 0.00 0.00 0.00 3.86
2761 3071 3.292481 ATGCCCCAAGAGCCACCAG 62.292 63.158 0.00 0.00 0.00 4.00
2762 3072 3.267233 ATGCCCCAAGAGCCACCA 61.267 61.111 0.00 0.00 0.00 4.17
2763 3073 2.757099 CATGCCCCAAGAGCCACC 60.757 66.667 0.00 0.00 0.00 4.61
2764 3074 2.757099 CCATGCCCCAAGAGCCAC 60.757 66.667 0.00 0.00 0.00 5.01
2765 3075 2.940467 TCCATGCCCCAAGAGCCA 60.940 61.111 0.00 0.00 0.00 4.75
2766 3076 2.123982 CTCCATGCCCCAAGAGCC 60.124 66.667 0.00 0.00 0.00 4.70
2767 3077 2.123982 CCTCCATGCCCCAAGAGC 60.124 66.667 0.00 0.00 0.00 4.09
2768 3078 1.077212 CACCTCCATGCCCCAAGAG 60.077 63.158 0.00 0.00 0.00 2.85
2769 3079 1.852157 ACACCTCCATGCCCCAAGA 60.852 57.895 0.00 0.00 0.00 3.02
2770 3080 1.679977 CACACCTCCATGCCCCAAG 60.680 63.158 0.00 0.00 0.00 3.61
2771 3081 2.440147 CACACCTCCATGCCCCAA 59.560 61.111 0.00 0.00 0.00 4.12
2772 3082 3.660571 CCACACCTCCATGCCCCA 61.661 66.667 0.00 0.00 0.00 4.96
2776 3086 4.408821 TCCGCCACACCTCCATGC 62.409 66.667 0.00 0.00 0.00 4.06
2777 3087 2.436646 GTCCGCCACACCTCCATG 60.437 66.667 0.00 0.00 0.00 3.66
2778 3088 2.815684 TAGGTCCGCCACACCTCCAT 62.816 60.000 0.00 0.00 43.68 3.41
2779 3089 3.533079 TAGGTCCGCCACACCTCCA 62.533 63.158 0.00 0.00 43.68 3.86
2780 3090 2.682494 TAGGTCCGCCACACCTCC 60.682 66.667 0.00 0.00 43.68 4.30
2781 3091 1.681327 TCTAGGTCCGCCACACCTC 60.681 63.158 0.00 0.00 43.68 3.85
2782 3092 1.982938 GTCTAGGTCCGCCACACCT 60.983 63.158 1.73 1.73 46.60 4.00
2783 3093 2.577593 GTCTAGGTCCGCCACACC 59.422 66.667 0.00 0.00 37.19 4.16
2784 3094 2.577593 GGTCTAGGTCCGCCACAC 59.422 66.667 0.00 0.00 37.19 3.82
2785 3095 2.682494 GGGTCTAGGTCCGCCACA 60.682 66.667 0.00 0.00 37.19 4.17
2786 3096 3.468140 GGGGTCTAGGTCCGCCAC 61.468 72.222 9.57 0.00 37.19 5.01
2790 3100 2.363406 AACGGGGGTCTAGGTCCG 60.363 66.667 10.71 10.71 46.95 4.79
2791 3101 2.364780 CCAACGGGGGTCTAGGTCC 61.365 68.421 0.00 0.00 0.00 4.46
2792 3102 3.027675 GCCAACGGGGGTCTAGGTC 62.028 68.421 0.00 0.00 37.04 3.85
2793 3103 3.007323 GCCAACGGGGGTCTAGGT 61.007 66.667 0.00 0.00 37.04 3.08
2794 3104 4.157120 CGCCAACGGGGGTCTAGG 62.157 72.222 0.00 0.00 41.99 3.02
2804 3114 4.547367 GGATCCCTCCCGCCAACG 62.547 72.222 0.00 0.00 35.28 4.10
2817 3127 6.936968 ACTACCTACAATAAGGATGGGATC 57.063 41.667 0.00 0.00 39.15 3.36
2818 3128 7.707467 AAACTACCTACAATAAGGATGGGAT 57.293 36.000 0.00 0.00 39.15 3.85
2819 3129 7.519347 AAAACTACCTACAATAAGGATGGGA 57.481 36.000 0.00 0.00 39.15 4.37
2820 3130 8.491958 ACTAAAACTACCTACAATAAGGATGGG 58.508 37.037 0.00 0.00 39.15 4.00
2821 3131 9.326413 CACTAAAACTACCTACAATAAGGATGG 57.674 37.037 0.00 0.00 39.15 3.51
2822 3132 9.886132 ACACTAAAACTACCTACAATAAGGATG 57.114 33.333 0.00 0.00 39.15 3.51
2824 3134 9.317827 AGACACTAAAACTACCTACAATAAGGA 57.682 33.333 0.00 0.00 39.15 3.36
2825 3135 9.583765 GAGACACTAAAACTACCTACAATAAGG 57.416 37.037 0.00 0.00 42.82 2.69
2826 3136 9.286946 CGAGACACTAAAACTACCTACAATAAG 57.713 37.037 0.00 0.00 0.00 1.73
2827 3137 8.246180 CCGAGACACTAAAACTACCTACAATAA 58.754 37.037 0.00 0.00 0.00 1.40
2828 3138 7.394359 ACCGAGACACTAAAACTACCTACAATA 59.606 37.037 0.00 0.00 0.00 1.90
2829 3139 6.210185 ACCGAGACACTAAAACTACCTACAAT 59.790 38.462 0.00 0.00 0.00 2.71
2830 3140 5.536161 ACCGAGACACTAAAACTACCTACAA 59.464 40.000 0.00 0.00 0.00 2.41
2831 3141 5.072741 ACCGAGACACTAAAACTACCTACA 58.927 41.667 0.00 0.00 0.00 2.74
2832 3142 5.635417 ACCGAGACACTAAAACTACCTAC 57.365 43.478 0.00 0.00 0.00 3.18
2833 3143 5.047802 CCAACCGAGACACTAAAACTACCTA 60.048 44.000 0.00 0.00 0.00 3.08
2834 3144 4.262335 CCAACCGAGACACTAAAACTACCT 60.262 45.833 0.00 0.00 0.00 3.08
2835 3145 3.992427 CCAACCGAGACACTAAAACTACC 59.008 47.826 0.00 0.00 0.00 3.18
2836 3146 4.874970 TCCAACCGAGACACTAAAACTAC 58.125 43.478 0.00 0.00 0.00 2.73
2837 3147 4.560108 GCTCCAACCGAGACACTAAAACTA 60.560 45.833 0.00 0.00 41.63 2.24
2838 3148 3.802675 GCTCCAACCGAGACACTAAAACT 60.803 47.826 0.00 0.00 41.63 2.66
2839 3149 2.479275 GCTCCAACCGAGACACTAAAAC 59.521 50.000 0.00 0.00 41.63 2.43
2840 3150 2.762745 GCTCCAACCGAGACACTAAAA 58.237 47.619 0.00 0.00 41.63 1.52
2841 3151 1.336517 CGCTCCAACCGAGACACTAAA 60.337 52.381 0.00 0.00 41.63 1.85
2842 3152 0.242825 CGCTCCAACCGAGACACTAA 59.757 55.000 0.00 0.00 41.63 2.24
2843 3153 0.607217 TCGCTCCAACCGAGACACTA 60.607 55.000 0.00 0.00 41.63 2.74
2844 3154 1.901948 TCGCTCCAACCGAGACACT 60.902 57.895 0.00 0.00 41.63 3.55
2845 3155 2.649034 TCGCTCCAACCGAGACAC 59.351 61.111 0.00 0.00 41.63 3.67
2850 3160 2.915659 ACCACTCGCTCCAACCGA 60.916 61.111 0.00 0.00 0.00 4.69
2851 3161 2.738521 CACCACTCGCTCCAACCG 60.739 66.667 0.00 0.00 0.00 4.44
2852 3162 2.358737 CCACCACTCGCTCCAACC 60.359 66.667 0.00 0.00 0.00 3.77
2853 3163 2.358737 CCCACCACTCGCTCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
2854 3164 4.329545 GCCCACCACTCGCTCCAA 62.330 66.667 0.00 0.00 0.00 3.53
2856 3166 4.767255 CTGCCCACCACTCGCTCC 62.767 72.222 0.00 0.00 0.00 4.70
2869 3179 2.032680 TTTAACTATGGGACGCTGCC 57.967 50.000 0.00 0.00 0.00 4.85
2870 3180 5.744666 TTATTTTAACTATGGGACGCTGC 57.255 39.130 0.00 0.00 0.00 5.25
2871 3181 7.259290 ACATTATTTTAACTATGGGACGCTG 57.741 36.000 0.00 0.00 0.00 5.18
2872 3182 6.485648 GGACATTATTTTAACTATGGGACGCT 59.514 38.462 0.00 0.00 0.00 5.07
2873 3183 6.485648 AGGACATTATTTTAACTATGGGACGC 59.514 38.462 0.00 0.00 0.00 5.19
2874 3184 7.172703 GGAGGACATTATTTTAACTATGGGACG 59.827 40.741 0.00 0.00 0.00 4.79
2875 3185 7.447545 GGGAGGACATTATTTTAACTATGGGAC 59.552 40.741 0.00 0.00 0.00 4.46
2876 3186 7.422089 GGGGAGGACATTATTTTAACTATGGGA 60.422 40.741 0.00 0.00 0.00 4.37
2877 3187 6.719829 GGGGAGGACATTATTTTAACTATGGG 59.280 42.308 0.00 0.00 0.00 4.00
2878 3188 7.294584 TGGGGAGGACATTATTTTAACTATGG 58.705 38.462 0.00 0.00 0.00 2.74
2879 3189 8.940397 ATGGGGAGGACATTATTTTAACTATG 57.060 34.615 0.00 0.00 0.00 2.23
2880 3190 8.960064 AGATGGGGAGGACATTATTTTAACTAT 58.040 33.333 0.00 0.00 0.00 2.12
2881 3191 8.344939 AGATGGGGAGGACATTATTTTAACTA 57.655 34.615 0.00 0.00 0.00 2.24
2882 3192 7.226059 AGATGGGGAGGACATTATTTTAACT 57.774 36.000 0.00 0.00 0.00 2.24
2883 3193 7.898014 AAGATGGGGAGGACATTATTTTAAC 57.102 36.000 0.00 0.00 0.00 2.01
2885 3195 9.807921 GAATAAGATGGGGAGGACATTATTTTA 57.192 33.333 0.00 0.00 0.00 1.52
2886 3196 8.514504 AGAATAAGATGGGGAGGACATTATTTT 58.485 33.333 0.00 0.00 0.00 1.82
2887 3197 8.061890 AGAATAAGATGGGGAGGACATTATTT 57.938 34.615 0.00 0.00 0.00 1.40
2888 3198 7.527868 CGAGAATAAGATGGGGAGGACATTATT 60.528 40.741 0.00 0.00 0.00 1.40
2889 3199 6.070538 CGAGAATAAGATGGGGAGGACATTAT 60.071 42.308 0.00 0.00 0.00 1.28
2890 3200 5.246203 CGAGAATAAGATGGGGAGGACATTA 59.754 44.000 0.00 0.00 0.00 1.90
2891 3201 4.040952 CGAGAATAAGATGGGGAGGACATT 59.959 45.833 0.00 0.00 0.00 2.71
2892 3202 3.580458 CGAGAATAAGATGGGGAGGACAT 59.420 47.826 0.00 0.00 0.00 3.06
2893 3203 2.965831 CGAGAATAAGATGGGGAGGACA 59.034 50.000 0.00 0.00 0.00 4.02
2894 3204 2.289133 GCGAGAATAAGATGGGGAGGAC 60.289 54.545 0.00 0.00 0.00 3.85
2895 3205 1.971357 GCGAGAATAAGATGGGGAGGA 59.029 52.381 0.00 0.00 0.00 3.71
2896 3206 1.974236 AGCGAGAATAAGATGGGGAGG 59.026 52.381 0.00 0.00 0.00 4.30
2897 3207 2.028567 GGAGCGAGAATAAGATGGGGAG 60.029 54.545 0.00 0.00 0.00 4.30
2898 3208 1.971357 GGAGCGAGAATAAGATGGGGA 59.029 52.381 0.00 0.00 0.00 4.81
2899 3209 1.337260 CGGAGCGAGAATAAGATGGGG 60.337 57.143 0.00 0.00 0.00 4.96
2900 3210 1.337260 CCGGAGCGAGAATAAGATGGG 60.337 57.143 0.00 0.00 0.00 4.00
2901 3211 1.341531 ACCGGAGCGAGAATAAGATGG 59.658 52.381 9.46 0.00 0.00 3.51
2902 3212 2.398498 CACCGGAGCGAGAATAAGATG 58.602 52.381 9.46 0.00 0.00 2.90
2903 3213 1.341531 CCACCGGAGCGAGAATAAGAT 59.658 52.381 9.46 0.00 0.00 2.40
2904 3214 0.744874 CCACCGGAGCGAGAATAAGA 59.255 55.000 9.46 0.00 0.00 2.10
2905 3215 0.460311 ACCACCGGAGCGAGAATAAG 59.540 55.000 9.46 0.00 0.00 1.73
2906 3216 0.174845 CACCACCGGAGCGAGAATAA 59.825 55.000 9.46 0.00 0.00 1.40
2907 3217 1.813859 CACCACCGGAGCGAGAATA 59.186 57.895 9.46 0.00 0.00 1.75
2908 3218 2.579201 CACCACCGGAGCGAGAAT 59.421 61.111 9.46 0.00 0.00 2.40
2909 3219 4.373116 GCACCACCGGAGCGAGAA 62.373 66.667 9.46 0.00 28.62 2.87
2920 3230 2.809601 CGACGCTAGGTGCACCAC 60.810 66.667 36.39 23.55 43.06 4.16
2921 3231 4.063967 CCGACGCTAGGTGCACCA 62.064 66.667 36.39 21.17 43.06 4.17
2922 3232 4.065281 ACCGACGCTAGGTGCACC 62.065 66.667 29.22 29.22 41.10 5.01
2927 3237 2.348888 CCCTTCACCGACGCTAGGT 61.349 63.158 0.00 0.00 43.97 3.08
2928 3238 2.348888 ACCCTTCACCGACGCTAGG 61.349 63.158 0.00 0.00 0.00 3.02
2929 3239 1.153823 CACCCTTCACCGACGCTAG 60.154 63.158 0.00 0.00 0.00 3.42
2930 3240 1.904865 ACACCCTTCACCGACGCTA 60.905 57.895 0.00 0.00 0.00 4.26
2931 3241 3.231736 ACACCCTTCACCGACGCT 61.232 61.111 0.00 0.00 0.00 5.07
2932 3242 3.041940 CACACCCTTCACCGACGC 61.042 66.667 0.00 0.00 0.00 5.19
2933 3243 1.954146 CACACACCCTTCACCGACG 60.954 63.158 0.00 0.00 0.00 5.12
2934 3244 1.145377 ACACACACCCTTCACCGAC 59.855 57.895 0.00 0.00 0.00 4.79
2935 3245 1.145156 CACACACACCCTTCACCGA 59.855 57.895 0.00 0.00 0.00 4.69
2936 3246 2.542907 GCACACACACCCTTCACCG 61.543 63.158 0.00 0.00 0.00 4.94
2937 3247 1.034838 TTGCACACACACCCTTCACC 61.035 55.000 0.00 0.00 0.00 4.02
2938 3248 0.381801 CTTGCACACACACCCTTCAC 59.618 55.000 0.00 0.00 0.00 3.18
2939 3249 0.034574 ACTTGCACACACACCCTTCA 60.035 50.000 0.00 0.00 0.00 3.02
2940 3250 0.381801 CACTTGCACACACACCCTTC 59.618 55.000 0.00 0.00 0.00 3.46
2941 3251 0.323360 ACACTTGCACACACACCCTT 60.323 50.000 0.00 0.00 0.00 3.95
2942 3252 1.031571 CACACTTGCACACACACCCT 61.032 55.000 0.00 0.00 0.00 4.34
2943 3253 1.312371 ACACACTTGCACACACACCC 61.312 55.000 0.00 0.00 0.00 4.61
2944 3254 0.098728 GACACACTTGCACACACACC 59.901 55.000 0.00 0.00 0.00 4.16
2945 3255 1.086696 AGACACACTTGCACACACAC 58.913 50.000 0.00 0.00 0.00 3.82
2946 3256 1.819928 AAGACACACTTGCACACACA 58.180 45.000 0.00 0.00 37.45 3.72
2947 3257 2.518949 CAAAGACACACTTGCACACAC 58.481 47.619 0.00 0.00 38.98 3.82
2948 3258 1.472082 CCAAAGACACACTTGCACACA 59.528 47.619 0.00 0.00 38.98 3.72
2949 3259 1.472480 ACCAAAGACACACTTGCACAC 59.528 47.619 0.00 0.00 38.98 3.82
2950 3260 1.472082 CACCAAAGACACACTTGCACA 59.528 47.619 0.00 0.00 38.98 4.57
2951 3261 1.202290 CCACCAAAGACACACTTGCAC 60.202 52.381 0.00 0.00 38.98 4.57
2952 3262 1.102154 CCACCAAAGACACACTTGCA 58.898 50.000 0.00 0.00 38.98 4.08
2953 3263 0.385390 CCCACCAAAGACACACTTGC 59.615 55.000 0.00 0.00 38.98 4.01
2954 3264 1.676006 GACCCACCAAAGACACACTTG 59.324 52.381 0.00 0.00 38.98 3.16
2955 3265 1.564348 AGACCCACCAAAGACACACTT 59.436 47.619 0.00 0.00 40.98 3.16
2956 3266 1.213296 AGACCCACCAAAGACACACT 58.787 50.000 0.00 0.00 0.00 3.55
2957 3267 1.947456 GAAGACCCACCAAAGACACAC 59.053 52.381 0.00 0.00 0.00 3.82
2958 3268 1.843851 AGAAGACCCACCAAAGACACA 59.156 47.619 0.00 0.00 0.00 3.72
2959 3269 2.618709 CAAGAAGACCCACCAAAGACAC 59.381 50.000 0.00 0.00 0.00 3.67
2960 3270 2.422803 CCAAGAAGACCCACCAAAGACA 60.423 50.000 0.00 0.00 0.00 3.41
2961 3271 2.158667 TCCAAGAAGACCCACCAAAGAC 60.159 50.000 0.00 0.00 0.00 3.01
2962 3272 2.131854 TCCAAGAAGACCCACCAAAGA 58.868 47.619 0.00 0.00 0.00 2.52
2963 3273 2.656947 TCCAAGAAGACCCACCAAAG 57.343 50.000 0.00 0.00 0.00 2.77
2964 3274 2.225017 GGATCCAAGAAGACCCACCAAA 60.225 50.000 6.95 0.00 0.00 3.28
2965 3275 1.354368 GGATCCAAGAAGACCCACCAA 59.646 52.381 6.95 0.00 0.00 3.67
2966 3276 0.991920 GGATCCAAGAAGACCCACCA 59.008 55.000 6.95 0.00 0.00 4.17
2967 3277 0.991920 TGGATCCAAGAAGACCCACC 59.008 55.000 13.46 0.00 0.00 4.61
2968 3278 3.282885 GAATGGATCCAAGAAGACCCAC 58.717 50.000 20.67 0.00 0.00 4.61
2969 3279 2.918934 TGAATGGATCCAAGAAGACCCA 59.081 45.455 20.67 5.22 0.00 4.51
2970 3280 3.652057 TGAATGGATCCAAGAAGACCC 57.348 47.619 20.67 2.65 0.00 4.46
2971 3281 5.012893 ACTTTGAATGGATCCAAGAAGACC 58.987 41.667 20.67 3.70 35.04 3.85
2972 3282 6.581171 AACTTTGAATGGATCCAAGAAGAC 57.419 37.500 20.67 7.31 35.04 3.01
2973 3283 5.412594 CGAACTTTGAATGGATCCAAGAAGA 59.587 40.000 20.67 4.44 35.04 2.87
2974 3284 5.182001 ACGAACTTTGAATGGATCCAAGAAG 59.818 40.000 20.67 20.06 35.04 2.85
2975 3285 5.070001 ACGAACTTTGAATGGATCCAAGAA 58.930 37.500 20.67 8.91 35.04 2.52
2976 3286 4.651778 ACGAACTTTGAATGGATCCAAGA 58.348 39.130 20.67 2.21 35.04 3.02
2977 3287 4.697352 AGACGAACTTTGAATGGATCCAAG 59.303 41.667 20.67 13.73 36.96 3.61
2978 3288 4.651778 AGACGAACTTTGAATGGATCCAA 58.348 39.130 20.67 0.00 0.00 3.53
2979 3289 4.253685 GAGACGAACTTTGAATGGATCCA 58.746 43.478 18.88 18.88 0.00 3.41
2980 3290 4.093556 GTGAGACGAACTTTGAATGGATCC 59.906 45.833 4.20 4.20 0.00 3.36
2981 3291 4.690748 TGTGAGACGAACTTTGAATGGATC 59.309 41.667 0.00 0.00 0.00 3.36
2982 3292 4.641396 TGTGAGACGAACTTTGAATGGAT 58.359 39.130 0.00 0.00 0.00 3.41
2983 3293 4.066646 TGTGAGACGAACTTTGAATGGA 57.933 40.909 0.00 0.00 0.00 3.41
2984 3294 4.452114 TCATGTGAGACGAACTTTGAATGG 59.548 41.667 0.00 0.00 0.00 3.16
2985 3295 5.377358 GTCATGTGAGACGAACTTTGAATG 58.623 41.667 0.00 0.00 0.00 2.67
2986 3296 4.452455 GGTCATGTGAGACGAACTTTGAAT 59.548 41.667 0.00 0.00 39.42 2.57
2987 3297 3.807622 GGTCATGTGAGACGAACTTTGAA 59.192 43.478 0.00 0.00 39.42 2.69
2988 3298 3.390135 GGTCATGTGAGACGAACTTTGA 58.610 45.455 0.00 0.00 39.42 2.69
2989 3299 2.480419 GGGTCATGTGAGACGAACTTTG 59.520 50.000 0.00 0.00 39.42 2.77
2990 3300 2.767505 GGGTCATGTGAGACGAACTTT 58.232 47.619 0.00 0.00 39.42 2.66
2991 3301 1.336887 CGGGTCATGTGAGACGAACTT 60.337 52.381 0.00 0.00 39.42 2.66
2992 3302 0.243907 CGGGTCATGTGAGACGAACT 59.756 55.000 0.00 0.00 39.42 3.01
2993 3303 0.038526 ACGGGTCATGTGAGACGAAC 60.039 55.000 11.61 0.00 39.42 3.95
2994 3304 0.242825 GACGGGTCATGTGAGACGAA 59.757 55.000 11.61 0.00 39.42 3.85
2995 3305 0.608308 AGACGGGTCATGTGAGACGA 60.608 55.000 11.61 0.00 39.42 4.20
2996 3306 0.456824 CAGACGGGTCATGTGAGACG 60.457 60.000 1.17 5.16 39.42 4.18
2997 3307 0.888619 TCAGACGGGTCATGTGAGAC 59.111 55.000 1.17 0.00 37.80 3.36
2998 3308 1.627864 TTCAGACGGGTCATGTGAGA 58.372 50.000 1.17 0.00 0.00 3.27
2999 3309 2.680312 ATTCAGACGGGTCATGTGAG 57.320 50.000 1.17 0.00 0.00 3.51
3000 3310 2.301583 TGAATTCAGACGGGTCATGTGA 59.698 45.455 3.38 0.00 0.00 3.58
3001 3311 2.674852 CTGAATTCAGACGGGTCATGTG 59.325 50.000 28.13 0.00 46.59 3.21
3002 3312 2.303022 ACTGAATTCAGACGGGTCATGT 59.697 45.455 36.15 12.37 46.59 3.21
3003 3313 2.932614 GACTGAATTCAGACGGGTCATG 59.067 50.000 36.15 11.75 46.59 3.07
3004 3314 3.252974 GACTGAATTCAGACGGGTCAT 57.747 47.619 36.15 15.42 46.59 3.06
3005 3315 2.743636 GACTGAATTCAGACGGGTCA 57.256 50.000 36.15 0.00 46.59 4.02
3011 3321 0.250513 AGGGGCGACTGAATTCAGAC 59.749 55.000 36.15 29.25 46.59 3.51
3012 3322 0.537188 GAGGGGCGACTGAATTCAGA 59.463 55.000 36.15 3.81 46.59 3.27
3013 3323 3.431579 ACGAGGGGCGACTGAATTCAG 62.432 57.143 29.74 29.74 45.64 3.02
3014 3324 1.218047 CGAGGGGCGACTGAATTCA 59.782 57.895 8.12 8.12 44.57 2.57
3015 3325 0.391263 AACGAGGGGCGACTGAATTC 60.391 55.000 0.00 0.00 44.57 2.17
3016 3326 0.036306 AAACGAGGGGCGACTGAATT 59.964 50.000 0.00 0.00 44.57 2.17
3017 3327 0.391263 GAAACGAGGGGCGACTGAAT 60.391 55.000 0.00 0.00 44.57 2.57
3018 3328 1.005394 GAAACGAGGGGCGACTGAA 60.005 57.895 0.00 0.00 44.57 3.02
3019 3329 2.654877 GAAACGAGGGGCGACTGA 59.345 61.111 0.00 0.00 44.57 3.41
3020 3330 2.809601 CGAAACGAGGGGCGACTG 60.810 66.667 0.00 0.00 44.57 3.51
3021 3331 2.864471 AACGAAACGAGGGGCGACT 61.864 57.895 0.00 0.00 44.57 4.18
3022 3332 2.356673 AACGAAACGAGGGGCGAC 60.357 61.111 0.00 0.00 44.57 5.19
3023 3333 2.356553 CAACGAAACGAGGGGCGA 60.357 61.111 0.00 0.00 44.57 5.54
3025 3335 2.281276 ACCAACGAAACGAGGGGC 60.281 61.111 0.00 0.00 32.22 5.80
3026 3336 1.227734 ACACCAACGAAACGAGGGG 60.228 57.895 0.00 0.00 35.80 4.79
3027 3337 1.938861 CACACCAACGAAACGAGGG 59.061 57.895 0.00 0.00 32.22 4.30
3028 3338 1.278637 GCACACCAACGAAACGAGG 59.721 57.895 0.00 0.00 0.00 4.63
3029 3339 1.278637 GGCACACCAACGAAACGAG 59.721 57.895 0.00 0.00 35.26 4.18
3030 3340 2.181521 GGGCACACCAACGAAACGA 61.182 57.895 0.00 0.00 39.85 3.85
3031 3341 1.720694 AAGGGCACACCAACGAAACG 61.721 55.000 0.00 0.00 43.89 3.60
3032 3342 0.458260 AAAGGGCACACCAACGAAAC 59.542 50.000 0.00 0.00 43.89 2.78
3033 3343 1.134965 CAAAAGGGCACACCAACGAAA 60.135 47.619 0.00 0.00 43.89 3.46
3034 3344 0.457851 CAAAAGGGCACACCAACGAA 59.542 50.000 0.00 0.00 43.89 3.85
3035 3345 0.394488 TCAAAAGGGCACACCAACGA 60.394 50.000 0.00 0.00 43.89 3.85
3036 3346 0.673437 ATCAAAAGGGCACACCAACG 59.327 50.000 0.00 0.00 43.89 4.10
3037 3347 1.963515 AGATCAAAAGGGCACACCAAC 59.036 47.619 0.00 0.00 43.89 3.77
3038 3348 2.380064 AGATCAAAAGGGCACACCAA 57.620 45.000 0.00 0.00 43.89 3.67
3039 3349 2.790433 GTAGATCAAAAGGGCACACCA 58.210 47.619 0.00 0.00 43.89 4.17
3040 3350 1.737793 CGTAGATCAAAAGGGCACACC 59.262 52.381 0.00 0.00 40.67 4.16
3041 3351 1.130561 GCGTAGATCAAAAGGGCACAC 59.869 52.381 0.00 0.00 0.00 3.82
3042 3352 1.448985 GCGTAGATCAAAAGGGCACA 58.551 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.