>input_sequence_61893
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---------------------------------------------------------------------------ATGTC
CGACCAACCACGGCCGCCGTCGATGCCGCCGCCCCAGCCGCAGCCGTTCCGGTTCTGGCTTCCTTACAGAAGCAATGTGG
GGTCATGGCGCCAGCAACCGCGGCTGCCAATGCCAGCCTCGCCTCGACCTCAGCCACCCGGTCCACCCCCACCAACTCCG
GCGGAGCCCGCGCCACGAGCGCCCCCGGCACGCGCCGTGGAGAAAGATATCCCCCTCCAGGCTGACTCGTCCGACGAGTC
GGACACGATTGCTGTTGAAGCTTTAGACTCGCTGCGGCTACGAGGAGCCAGGCCGGCCATGGCTGACCTGGAGCTGACGC
TCTCGAGGTCGCCGCCGCCGCCCACGGGCCCAGAGCAGGGCAGGAGCGGGGGTGGCGACCGTGGGAACGACGGCGCCAAG
ATCTCCATCTCCGGCTTCCCGAGGGCGCGCCTCTTCGACGGCGTCCGCGCGCCGTACCGGCGGGAGATCGAGGACGGCCT
CAAGAGCCTGGCCGGCCGCGAGACGCCGGCGCCGACGCCGGCGGACATCGGCAACCAGGGGTACCGCGTCTTCACGCTGG
CCGGTCACAACGTCGGCGCGAGCATGGTCCTCGGCAACGGCTCCAGCGGCGCGCCACTGCCAAGAAGCAATGAGCCGGAG
GGGTCGGCGAGGCCGCCGTCGGTGGCCGCGAACGTGAACAGCAACGTGCAGGGGGTGAACAACTCGGCGATGGAGGAGAG
CACGTGCAACTCCGGCGACCCCGGGGTGCGCGTGGACATCAAGAACGCGCACGAGGATCGTGTTGCGCTGGGACATGGCA
AGGAGGAGCGGGAGGAGAAGCCAGAGGAACCGGTAAGAACACCGCCGCCGCAAGCAGCGAGCATCGGCGAGGCGTCCCCG
GCGCCGCCGAAGACGAGGCGGTGCCTTCGCGCGCTGATGATCGAGGAGCGGAAGCCGAAGCCGATAGCCTGCCGGTTCCA
GTGCGTGGCGGATCACGCGCCGAAGCCGGCGACGGCGGGCGACCCCGGCGGTAACAAGAGCGCGGAGGAGGAAGGCGCGG
AAGAGAGCACAAGGTGA---------------------------------------------------------------
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>chr5D_1_TraesCS5D01G189600
AGTGGTTTTATGAAGAAGTTTGAGGGTTGCTGGAAAATAGAGCCCCTGTTTGTTGACAAGGAAGCATGCCTTCCTCTTGA
TCCACACACGCTGGAAGAATATGATTCTTGTACTGCCGGCAGAGGAAGAGTTGGATCTGCCATTACCTTGGATCAGCTTA
TCGAGCCAGCTCTGTTGCCCCCGCAGCCCATCGCATGGTATGTGAGAGGGATTACCACAAGGACAACCGAGATGCTGGTA
AATGACCTAATAGCGGAAACTGCTCGACTGCGAGGCCTGGCAAGCAATGGGGATGCCAACCTGCGTACTGAAGAAAATTG
TGATGTTAATGGAGGCGTTCTAACAGAAGAGTGTAATGATGTGAAGGAAAGATGGCGGCAGAGAAGAAAAGCTGGACGAC
ATGTAAGTTCCCTTAGATTGACAC--GACAATAAGGGCAGGATAAACTATTAAGCATGACCGATGTATAACCAAGTTAGT
GTATATGTTTGCAGTTTTGTTGTTGATGGTGTAGCATTCCTCGAATTTTGGATTACTGATGATGATTATGGGTGAACATG
TCTGAGAT--AGATGTTGAACGGTGTATAATTGTGTTGATGTTGTTACAAATGAAATTCTACTTCTACCAGAAGCTATCA
TTCCTTTGGTTCAGCTTGATATGCAGTTTGTTCTGAACTTTCTGGGCAGCTGAAGTTGCTTGATCTTCATGCCTGGCGTG
CTTGGCATGCGTACTACATTTCTTTAAAATATTTTTTACACTAACAAATTTACA--------------------------
-----AATCAAAGTTTCATGAAAACCGAAGCTGACCAGATGAAGCAGATGCCAATCTCTGAACCTGGCAAAAACTTGTGG
GTGAGTTCATCCATCCTTTCTCCAAATCTTCAAGGCAAGGAAAGCCTCCAATTCCTTTCTTTCCTACACATGCTCAAGGC
AACGTCGCCCTATGAAACTACCACCCTACCACAGCTTTTGCATTCTATAGCCCACTGATCAACCGCGCGGCAGCCATGTC
CGACCAACCACGGCCGCCGTCGATGCCGCCGCCCCAGCCGCAGCCGTTCCGGTTCTGGCTTCCTTACAGAAGCAATGTGG
GGTCATGGCGCCAGCAACCGCGGCTGCCAATGCCAGCCTCGCCTCGACCTCAGCCACCCGGTCCACCCCCACCAACTCCG
GCGGAGCCCGCGCCACGAGCGCCCCCGGCACGCGCCGTGGAGAAAGATATCCCCCTCCAGGCTGACTCGTCCGACGAGTC
GGACACGATTGCTGTTGAAGCTTTAGACTCGCTGCGGCTACGAGGAGCCAGGCCGGCCATGGCTGACCTGGAGCTGACGC
TCTCGAGGTCGCCGCCGCCGCCCACGGGCCCAGAGCAGGGCAGGAGCGGGGGTGGCGACCGTGGGAACGACGGCGCCAAG
ATCTCCATCTCCGGCTTCCCGAGGGCGCGCCTCTTCGACGGCGTCCGCGCGCCGTACCGGCGGGAGATCGAGGACGGCCT
CAAGAGCCTGGCCGGCCGCGAGACGCCGGCGCCGACGCCGGCGGACATCGGCAACCAGGGGTACCGCGTCTTCACGCTGG
CCGGTCACAACGTCGGCGCGAGCATGGTCCTCGGCAACGGCTCCAGCGGCGCGCCACTGCCAAGAAGCAATGAGCCGGAG
GGGTCGGCGAGGCCGCCGTCGGTGGCCGCGAACGTGAACAGCAACGTGCAGGGGGTGAACAACTCGGCGATGGAGGAGAG
CACGTGCAACTCCGGCGACCCCGGGGTGCGCGTGGACATCAAGAACGCGCACGAGGATCGTGTTGCGCTGGGACATGGCA
AGGAGGAGCGGGAGGAGAAGCCAGAGGAACCGGTAAGAACACCGCCGCCGCAAGCAGCGAGCATCGGCGAGGCGTCCCCG
GCGCCGCCGAAGACGAGGCGGTGCCTTCGCGCGCTGATGATCGAGGAGCGGAAGCCGAAGCCGATAGCCTGCCGGTTCCA
GTGCGTGGCGGATCACGCGCCGAAGCCGGCGACGGCGGGCGACCCCGGCGGTAACAAGAGCGCGGAGGAGGAAGGCGCGG
AAGAGAGCACAAGGTGATGTCGGAGTCGGAAGCACTCGGTGTGTACTACG-----------------GTTTTTGTGCAAA
AATACT---GTAAATCCAAACGATATTACTGCTGACTTGGTAAAA---GATCAGAAGCTGC-------------------
-GATAAATTTCATGTCACGGCATTGAGCTCAGAATGTCACCATGACTTTGCACTACAGCCTCCAGCAGAC----ACATGT
CCGGCAATAATGAA------------------------------------------------------------------
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--------------------------------------------ATGTTACCAAAGAATTGTCGTTGGGAT---------
----------------------ATCCTCTTGCTGAGGCCAGAAAACTTAGCAGCAGAGAAATGGAGATAGCCTCTTGCCT
TTCAGTCGCTCAAAAGGCATATCCAGGAATAAAATTGTTGGCAAGGGACACTTTGCATT-TTGTGCCGCCGTGAAGGCCA
CCAAAGCACCTCAGCAAGGATCCTTTGCGTACTGAACTGTAGCGTCTC-----TCTTGTGCTCCTATTCTAGACAAAATA
TAATTTGCGTGAGAAAGTATAAATGAGTAGCAATCCACAAAACCACATTTTATTTGATGCTACTATCATGCATGTACAAG
TTTTGTTCAAACATTTTACCAAACCATAATTTTAGTTTCTGCAAGGTGGCCGTGAAAATAGTGCATCCCGACCTAAGTAG
CAGCACAAAATTCGACACCCACATTTTAATACAATCATCCAACAAGCAAAGAGAGGAAAGAATTAGGGTTTCCACCCCTT
GGTCGGTGCCGACGCCGGTTCGCCCCGCCTCTGGTGGCTCTTGGGGCATGGAGGTGTGGCGGACCTAGACCCCCGTTGGC
GGGAGGGATCCCATCCTTATTGTAGGTAGTTTTAGTGTCTCGGTTGGAGCGAGTGGTGGGCAGCGTCCCATAGTTAAAAT
AATGTCCTCCCCATCTTATTCTCGCTCCGGTGGTGCACCTAGCGTCGGTGAAGGGTGTGTGTGCAAGTGTGTCTTTGGTG
GGTCTTCTTGGATCCATTCAAAGTTCGTCTCACATGACCCGTCTGAATTCAGTCGCCCCTCGTTTCGTTGGTGTGCCCTT
TTGATCTACGC
>chr5A_1
AGTGGTTTTATGAAGAAGTTTGAGGGTTGCTGGAAAATAGAGCCCCTATTTGTTGACAAGGAAGCATGCCTTCCTCTTGA
TCCACATACGCTGGAAGAATATGATTCTTGTTCTGCTGGCAGAGGAAGAGTTGGATCTGCCATTACCTTGGATCAGCTTA
TTGAACCTGCTCTGTTGCCCCCACAGCCCATCGCATGGTATGTGAGAGGGATTACCACAAGGACGACCGAGATGCTGGTG
AATGACCTAATAGCGGAAACTGCTCGGCTGCGAGGCCTGGCAAGCAATGGGGATGCCAACGAGCATACTGAAGAAAATCG
TGATGTTAATGGAGACGTTCTAACAGAAGATTGTAATGATGTTAAGGAAAGGTGGCGACAGAGAAGAAAAGCTGGACGAC
ATGGAAGTTCCCTTAGATTGACACAAGACAATAGGGGCAGGATAAGCTATTAAGCCTGATCAATATATAACTAAGTTAGT
GTATATGTTTGCAGTTTTG-TGTTGATGGTGTAGCATTCCTCGAATTTTGGATTACTGGTCATGATTATGGATGAGCATG
TCTGAGATAGAGATGTTGAATGGTGTATAATTGTTTTGATGATGTTACAAATGAAATTCTACTTCGACCAGAAGCTATCA
TTACTTTGGTTCAGTTTGATATGCAGTT----CTGAACTTTCTGGGCAGCTGAAGTTGCTTGATCTTCATGCTTGGCGTG
CTTGGCGTGCCTAGTACATTTCTTTAAAATATTTT-------AACAAAATTACAGTGTTGCTGTGTGATGATGTGAGCTC
ATGTGAATCAAAGTTTCATGAAAACTGAAGCTGGCCAGATGAACCAGATGCCAATCTCTAAACCTGGCCAAAACTTGTGG
GCTAGTTCATCCATCC-TTCTCCAAATCTTCAAGGCAAGGAAAGCCTCCAATTCCTTTCTTTACTACACATGCTCAAGGC
AACGTCGCCCTATGAAACTACCACCCTACCACAGCTTTTGCATTCTATAGCCCACTGATCAACCGCGCGGCAGCCATGTC
CGACCATCCACGGCCGCCGTCGATGCCGCCGCCTCAGCCGCAGCCCTTCCGGTTCTGGCTTCCTTACAGAAGCAATGTGG
GGTCGTGGCGCCAGCAACCGCGGCCGCCAATGCCACTGCCGCCTCGACCTCAGCCACCCGGTCCACCCCCACCAACCCCG
GCGGAGCCCGCACGGCGAGCGCCTCCGTCACGCGCCGTGGAGGAAGACATCCCCATCCAGGCTGACTCGTCCGACGAGTC
GGACACGGTTGCTGTTGAAGCTTTAGAGTCGCTGCGGCTACGAGGAGCCAGGCCGGCCATGGCTGACTTGGAGCTGACGC
TCTCGAGGTCGCCACCGCCGCCCACGGGCCCAGAGCAGGGCACGAGCGGGGGCGGCGACCGTGGGAATGACGGCGCCAAG
ATCTCCATCTCCGGCTTCCCGAGGGCGCGCCTCTTCGACGGCGCCCGCGCGCCGTACCGGCGGGAGATCGAGGACGGCCT
CAAGAGCCTGGCCGGCCGCGAGACGCCGGCGCCGAGCCCGCCGGACATCGGCAACCAGGGGTACCGGGTCTTCACGCTGG
CCGGCCACAACGTCGGCGCGAGCATGGTCCTCGGGAACGGCCCCAGCGGCGTGCCACTGCCAAGAACCGATGAGCCGGAG
CGCTCGGCGAGGCCGCCGTTGGTTGCCGCAAACGTGAACAGCAACGTGCAGGGCGTGAACAACTCGGCGATGGAGGAGAG
CACGTGCAACTCCGGCGACCCCGGGGTGCGCGTGGACATCAAGAACACGCACGAGGATCGTGTTGCGCTGGGGCAGGGCA
AGGAGGAGCGGGAGGAGAAGCCAGAGGAACCGTCAAGAACACCGCCGCCGCAAGCAGCGAGCAGCGGCGAGGCGTCCCCG
GCGCCGCCGAAGACGAGGCGGTGCCTTCGCGCGCTGATGATCGAGGAGCGGAAGCCGAAGCCGATATCCTGCCGGTTCCA
GTGCGTGGCGGACCACGCGCCGAAGCCGGCGACGGCGAGCGACCCCGGCGGTAACAAGAGCGCGG-GGAGGAAGGCGCGG
AAGACAG-------------------------------------------------------------------------
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>chr5B_1
AGTGGTTTTATGAAGAAGTTTGAGGGTTGCTGGAAAATAGAGCCCCTGTTTGTTGACAAGGAAGCATGCCTTCCTCTTGA
TCCACATACGCTGGAAGAATATGATTCTTGTTCTGCTGGCAGAGGAAGAGTTGGATCTGCCATTACCTTGGATCAGCTTA
TTGAGCCTGCTCTGTTGCCCCCACAGCCCATCGCATGGTATGTGAGAGGGATTACCACAAGGACGACCGAGATGCTGGTG
AATGACCTAATAGCGGAAACTGCTCGGCTGCGAGGCCTGGCAAGCAATGGGGATGCCAACCAGCATACTGAAGAAAATCA
TGATGTTAATGGAGACGTTCTAACAGAAGATTGTAATGATGTTAAGGAAAGGTGGCGACAGAGAAGAAAAGCTGGACGAC
AGGGAAGTTCCCTTAGATTGACA--AGACAACAGGGGCAGGATAAACTATCAAGCCTGATCAATGTATAACTAAGTTAGT
GTATATGTTTGCAGTTTTG-TGTTGATGGTGTAGCATTCCTCGAATTTTGGATTACTGGTCATGATTATGGATGAGCATG
TCTGAGATAGAGATGTTGAATGGTGTATAATTGTTTTGATGATGTTACAAATGAAATTCTACTTCGACCAGAAGCTATCA
TTACTTTGGTTCAGTTTGATATGCAGTT----CTGAACTTTCTGGGCAGCTGAAGTTGCTTGATCTTCATGCCTGGTGTG
CTTGGCATACCTACTACATTCCTTTAAAATATTTT-------AACAAATTTACAGTGTTGCTGCGTGATGATGTGAGCTC
ATGTGAATCGAAGTTTCATGAAAACTGAAGCTAACCAGATGAACCAGATGCCAATCTCTGAACCTGGCCAAAACTTGTGG
GTGAGTTCATCCATCTTTTCTCCAAATCTGCAAGGCAAGG-AAGCCTCCAATTCCTTTCTTTCGTACACATGCTCAAGGC
AACGTCGCCCTATGAAACTACCACCCTACCACAGCTTTTGCATTCTATAGCCCACTGATCGATCGCGCGGCAGCCATGTC
CGACCAACCACGGCCGCCGTCGATGCCACCACCCCAGCCGCAGCCGTTCCGGTTCTGGCTTCCTTACAGAAGCAATGTGG
GGTCGTGGCGCCATCAACCGCCGCCCCCATTGCCACCGCTGCCTCGACCTCAGGCACCCGGTTCACCCACACCAACTCCG
GCGGAGCCCGCGCC------------GGCACGCGCCGTGGAGGAAGATACCCCCCTCCAGGCTGACTCGTCCGACGAGTC
GGACACGATTGCTGTTGAAGCTTTAGACTCGCTGCGGCTACGAGGAGCCAGGCCGGCCATGGCTGACCTGGAGCTGACGC
TCTCGAGGTCGCCGCCGCCGCCCACGGGCCCAGAGCAGGGCACGAGCGGGGGTGGCGACCGTGGGAACGACGGCGCCAAG
ATATCCATCTCCGGCTTCCCGAGGGCCCGCCTCTTCGACGGCGCCCGCGCGCCGTACCGGCGGGAGATCGAGGACGGGCT
CAAGAGCCTGGCCGGCCGCGAGACGCCGGCGCCGAGCCCGCCGGACGTCGGCAACCAGGGGTACCGCGTCTTCACGCTGG
CCGGTCACAACGTCGGCGCGAGCATGGTCCTCGGCAACGGCTCCAGCGGCGCGCCACTGCCAAGAAGCAATGAGCCGGAG
GGGTCGGCGAGGCCGCCGTCGGTGGCCGCGAACGTGAACAGCAACGTGCAGGGTGTGAACAACTCGGCGATGGAGGAGAG
CACGTGCAACTCCGGTGACCCCGGGGTGCGCGTGGACATCAAGAACGCCCACGAGGATCGTGTTGCGCTGGGGCAGGGCA
AGGAGG---GGGAGAAGAAGCCAGAGGAACCGGCAAGAACACCGCCACCGCAAGCAGAAAGCAGCGGCGAGGCGGCCCGG
GCGCCGCCGAAGACGAGGCGGTGCCTTCGCGCGCTGATGATCGAGGAGCGAAAGCCGAAGCCGATATCCTGCCGGTTCCA
GTGCGTGGCGGACCACGCGCCGCCGCCGGCGACCGCGAGCAACTCCGGCGGTAATAAGAGTGC---GGAGGAAGGCGCGG
AAGAGGGCACAAGGTGATCTCGAACTCGAAGCGTGCGCGGGAATCGGAAGCACACTGGTTTGTAATTGTTTTTGCGCATA
AAAATA---CGAAATCCAAACGACACATGAGACTCTGAAATTACAGTTATCTTCTCGCAAAAAGAATATT-----TGCCG
TAATTTGTTTCAGTTTTGCTATTCGTCGGAGTTCCTGAAATTGTAATTTGGGTTAGTCGATTTTGCACGTAGCTCCGAGT
CCGAAGACAGGGGGCGCCGCGGCGAGCGGTGGCAAGGCCAAGTCAGGACGGAGCGACCCGAAGTCAGGGACGACGCGGCA
ACGACGTCGCCCATGGAAGGGAGTCTGAGGTTAATGGGTTTGGATACGGGGATGTCGTCGGCAATTAGACCGTATCGGGG
CTACGAGCAATACACTAGCAAGAATGATAGAACTATACCACTATATGTTACAAAAAGATTCAAAAGAAAATGCACAACGG
AGTGAGTATTGGAGATATCTCAATCCTCCTGCTGAGGCCAGAAATGTCCCTTCTCC--------------------GCCT
TTCAGTCGCTCAAAAGGCATATCCCGGAATAAAATTGTTGGCAAGGGACATTTTGCACTCTTTTGCCGCCCTGAAGGCCA
CAG-AGCACCTTAGC-----------------------------------------------------------------
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>chr5A_2047
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-AGAGAGCACGAGGTGATGTCGGAGTCGAAAGCACTTCA----------------------------GTTTTTGTGCAAA
AATACTACTGTAAATCCAAACGACATTACTGCTAACTTGGTAAAAAGGGATCAGAAGCTGCTTCACTTTGCCACATGCTG
TGATAAGTTTCATGTG-------------------------------------TACAGCCTCCAGCAGACTCGAACATGT
CTGGCGAAAATGAA------------------------------------------------------------------
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--------------------------------------------ATGTTACAAAAGAATTGTCATTGGGAT---------
----------------------ATCCTCTTGCTGAGGCCAGAAAATGTAGCAGCAGAGAAATGGAGATAGCCTCTTGCCT
TTCAGTCGCTCAAAAGGCATATCCAGGAATAAAATTGTTGGCAAGGGACAC-TTGCATT-TTGTGCCGCCGTGAAGGCCA
CCAAAGCACCTCAGCAAGGATCCTTTGTGTACCGGACCGTGGCGTCTCTCTTGTCTTGTGCTCCTATTATAGACAAAATG
CAATTTGCATGTGAAAGTATAAATGAGTAGCAATCCACAAAACCGCATTTTATTTGATGCTACTATCATGCATGTACAAG
TTTTGTTCAAACATTTTACCAAACCATAACTTTAG---------------------------------------------
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>SNPs
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------S------------------------S----S-------------------------------------------
-S-----S--------------S-----------------------------------------S--------------S
--------------------------S----------------------------------S--S-------------S-
--------------S---------------S-----------S--------S-----S----------------------
---S-----------------------------S---------------------S---S-S---------S--------
-------------------S--------------------------------------S-S----------S---S----
--------------------S-------------S------S-----------------------S--------------
--S-----------S-------------SSSS------------------------------------------------
----------S------------------------SSSSSSS--------------------------------------
-------------------------S-----------------S------------------------S-----------
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----S-------------------S----------S-SS-----------------------------------------
--------------S--------S------------------S-------------------------------------
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------------------------------------------S-------------------------------------
-------------------------------------------S------------------------------------
-----------------------------------SS---S---------------------------------------
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-----------------------------------------------------S--------------------------
------------------------------------------------------------------------S--S----
---------------------------------S-----------------------------S----------------
------------------------------------------------------------------S-------------
------------S------------------------S---------------------------S--------------
----------------------------S-------SS-S-SS-SSS-S-------------------------------
-----------------------S---------S----------------------------------------------
------S--------SSSSSSS-S-SSSSSSSSSSSSS-SSSSS-S----SSS---------------------------
-----S-S------------------------------------------------------------------------
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---------------------------------------------------S-----------S----------------
---------------------------------------------S----------------------------------
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---------------------------S----S-S--S--S---------------------------S----------S
S-------S--S--------------------------------S-----------------------------------
-----------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_240
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------------------------------------------------------------GGACAACCGAGATGCTGGTA
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>reverse_2291
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--------------------------------------------------CACTACAGCCTCCAGCAGAC----------
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