Multiple sequence alignment - TraesCS5D01G180200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G180200 chr5D 100.000 4061 0 0 1 4061 280389513 280393573 0.000000e+00 7500
1 TraesCS5D01G180200 chr5D 94.387 481 21 4 355 829 355814368 355814848 0.000000e+00 734
2 TraesCS5D01G180200 chr5A 94.397 3284 96 33 830 4061 372158391 372155144 0.000000e+00 4964
3 TraesCS5D01G180200 chr5A 87.349 166 8 6 1 157 372158823 372158662 1.160000e-40 178
4 TraesCS5D01G180200 chr5A 87.117 163 9 3 204 355 372158556 372158395 1.500000e-39 174
5 TraesCS5D01G180200 chr5B 95.289 1762 60 13 824 2573 318279856 318281606 0.000000e+00 2772
6 TraesCS5D01G180200 chr5B 94.750 1219 44 9 2859 4061 318283642 318284856 0.000000e+00 1879
7 TraesCS5D01G180200 chr5B 97.129 209 6 0 2581 2789 318283392 318283600 1.800000e-93 353
8 TraesCS5D01G180200 chr5B 90.833 120 11 0 3673 3792 318284584 318284703 1.170000e-35 161
9 TraesCS5D01G180200 chr6D 95.397 478 19 2 355 829 137205379 137204902 0.000000e+00 758
10 TraesCS5D01G180200 chr6D 94.351 478 22 4 355 829 269654386 269653911 0.000000e+00 728
11 TraesCS5D01G180200 chr6D 85.088 342 24 10 3460 3788 358210177 358209850 1.410000e-84 324
12 TraesCS5D01G180200 chr6D 90.452 199 17 1 3596 3792 430447204 430447006 1.120000e-65 261
13 TraesCS5D01G180200 chr4D 94.561 478 22 3 355 829 302026352 302025876 0.000000e+00 736
14 TraesCS5D01G180200 chr7D 94.549 477 23 3 355 829 362935705 362936180 0.000000e+00 734
15 TraesCS5D01G180200 chr7D 94.351 478 23 3 355 829 250974992 250974516 0.000000e+00 730
16 TraesCS5D01G180200 chr7D 88.581 289 25 4 3484 3766 551607824 551608110 1.080000e-90 344
17 TraesCS5D01G180200 chr7D 88.256 281 26 3 3492 3766 551503903 551504182 3.030000e-86 329
18 TraesCS5D01G180200 chr7D 86.813 273 24 5 3791 4061 551608019 551608281 1.100000e-75 294
19 TraesCS5D01G180200 chr7D 85.766 274 27 5 3790 4061 551504090 551504353 3.090000e-71 279
20 TraesCS5D01G180200 chr3D 94.351 478 23 3 355 829 417949139 417948663 0.000000e+00 730
21 TraesCS5D01G180200 chr3D 94.351 478 22 4 355 829 531724499 531724974 0.000000e+00 728
22 TraesCS5D01G180200 chr2D 93.971 481 26 2 352 829 571287538 571288018 0.000000e+00 725
23 TraesCS5D01G180200 chr1D 89.789 284 19 5 3449 3725 50915725 50915445 4.990000e-94 355
24 TraesCS5D01G180200 chr7A 85.312 320 38 5 3454 3766 637078318 637078635 5.060000e-84 322
25 TraesCS5D01G180200 chr2A 89.558 249 20 3 3511 3753 780721073 780721321 1.100000e-80 311
26 TraesCS5D01G180200 chr7B 85.938 192 21 2 3499 3684 596516943 596517134 2.480000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G180200 chr5D 280389513 280393573 4060 False 7500.00 7500 100.00000 1 4061 1 chr5D.!!$F1 4060
1 TraesCS5D01G180200 chr5A 372155144 372158823 3679 True 1772.00 4964 89.62100 1 4061 3 chr5A.!!$R1 4060
2 TraesCS5D01G180200 chr5B 318279856 318284856 5000 False 1291.25 2772 94.50025 824 4061 4 chr5B.!!$F1 3237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 564 0.177141 GCACTACTGGCCGTTGGATA 59.823 55.000 0.00 0.00 0.00 2.59 F
819 924 0.314578 CAAATCTCGTGCGTGCGATC 60.315 55.000 4.15 0.00 40.29 3.69 F
834 939 0.809385 CGATCCACGTGTACACTCCT 59.191 55.000 23.01 3.33 37.22 3.69 F
893 998 1.618861 AACTTCGAGAGTTCGCATCG 58.381 50.000 7.04 0.00 45.40 3.84 F
2109 2224 1.895131 GACCCTGAAATGCACAACCAT 59.105 47.619 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 1428 1.470098 CCAGAGCGCAATAAAGCAACT 59.530 47.619 11.47 0.00 35.48 3.16 R
2082 2197 2.227388 GTGCATTTCAGGGTCTTCACAG 59.773 50.000 0.00 0.00 0.00 3.66 R
2812 4735 2.935201 GCTGTGTTATCTCTCTGGCAAG 59.065 50.000 0.00 0.00 0.00 4.01 R
2844 4767 8.301720 AGACACGTATAAGTTTTATCACTGTGA 58.698 33.333 13.60 13.60 0.00 3.58 R
3662 5600 0.242017 GTGGGCTCAGATGTTGCAAC 59.758 55.000 22.83 22.83 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 81 2.941453 TTTGCAACGGTGTTGCTAAA 57.059 40.000 28.38 23.05 45.13 1.85
76 83 1.669604 TGCAACGGTGTTGCTAAAGA 58.330 45.000 28.38 10.90 45.13 2.52
77 84 1.332375 TGCAACGGTGTTGCTAAAGAC 59.668 47.619 28.38 5.50 45.13 3.01
78 85 1.332375 GCAACGGTGTTGCTAAAGACA 59.668 47.619 23.34 0.00 41.87 3.41
79 86 2.602217 GCAACGGTGTTGCTAAAGACAG 60.602 50.000 23.34 0.00 41.87 3.51
80 87 2.869801 CAACGGTGTTGCTAAAGACAGA 59.130 45.455 0.00 0.00 31.23 3.41
220 314 9.959749 TTTTAGGATAACAAGATTTGTGTTGTC 57.040 29.630 5.72 5.72 44.59 3.18
239 333 0.299895 CATGATGAAGACGTGCTCGC 59.700 55.000 8.29 1.32 41.18 5.03
260 354 2.489329 CCCGCTTGATGTGTCAGATTTT 59.511 45.455 0.00 0.00 35.39 1.82
261 355 3.426695 CCCGCTTGATGTGTCAGATTTTC 60.427 47.826 0.00 0.00 35.39 2.29
264 358 4.631377 CGCTTGATGTGTCAGATTTTCCTA 59.369 41.667 0.00 0.00 35.39 2.94
273 378 6.071334 TGTGTCAGATTTTCCTAGTCGATCTT 60.071 38.462 0.00 0.00 0.00 2.40
303 408 2.585247 AGCCGGCGAATTCGTAGC 60.585 61.111 27.24 24.67 42.22 3.58
309 414 1.013323 GCGAATTCGTAGCACGCTG 60.013 57.895 27.24 0.00 44.67 5.18
314 419 0.796312 ATTCGTAGCACGCTGGTTTG 59.204 50.000 0.72 0.00 42.21 2.93
321 426 2.804647 AGCACGCTGGTTTGTTAAAAC 58.195 42.857 0.00 0.00 44.19 2.43
350 455 5.887214 TCATAAGATGCCCTAAACTAGCA 57.113 39.130 0.00 0.00 41.50 3.49
355 460 4.455606 AGATGCCCTAAACTAGCATTGTC 58.544 43.478 0.00 0.00 46.81 3.18
356 461 4.164988 AGATGCCCTAAACTAGCATTGTCT 59.835 41.667 0.00 0.00 46.81 3.41
357 462 5.366768 AGATGCCCTAAACTAGCATTGTCTA 59.633 40.000 0.00 0.00 46.81 2.59
358 463 5.630415 TGCCCTAAACTAGCATTGTCTAT 57.370 39.130 0.00 0.00 0.00 1.98
359 464 6.740944 TGCCCTAAACTAGCATTGTCTATA 57.259 37.500 0.00 0.00 0.00 1.31
360 465 6.522054 TGCCCTAAACTAGCATTGTCTATAC 58.478 40.000 0.00 0.00 0.00 1.47
361 466 5.932883 GCCCTAAACTAGCATTGTCTATACC 59.067 44.000 0.00 0.00 0.00 2.73
362 467 6.465084 CCCTAAACTAGCATTGTCTATACCC 58.535 44.000 0.00 0.00 0.00 3.69
363 468 6.465084 CCTAAACTAGCATTGTCTATACCCC 58.535 44.000 0.00 0.00 0.00 4.95
364 469 6.270231 CCTAAACTAGCATTGTCTATACCCCT 59.730 42.308 0.00 0.00 0.00 4.79
365 470 7.453752 CCTAAACTAGCATTGTCTATACCCCTA 59.546 40.741 0.00 0.00 0.00 3.53
366 471 7.873699 AAACTAGCATTGTCTATACCCCTAT 57.126 36.000 0.00 0.00 0.00 2.57
367 472 8.967779 AAACTAGCATTGTCTATACCCCTATA 57.032 34.615 0.00 0.00 0.00 1.31
368 473 9.562226 AAACTAGCATTGTCTATACCCCTATAT 57.438 33.333 0.00 0.00 0.00 0.86
370 475 9.869667 ACTAGCATTGTCTATACCCCTATATAG 57.130 37.037 2.46 2.46 36.74 1.31
371 476 9.869667 CTAGCATTGTCTATACCCCTATATAGT 57.130 37.037 8.92 0.00 36.76 2.12
372 477 8.540507 AGCATTGTCTATACCCCTATATAGTG 57.459 38.462 8.92 0.00 36.76 2.74
373 478 8.123130 AGCATTGTCTATACCCCTATATAGTGT 58.877 37.037 8.92 7.94 36.76 3.55
374 479 8.198109 GCATTGTCTATACCCCTATATAGTGTG 58.802 40.741 8.92 0.00 36.76 3.82
375 480 7.713734 TTGTCTATACCCCTATATAGTGTGC 57.286 40.000 8.92 0.00 36.76 4.57
376 481 5.884232 TGTCTATACCCCTATATAGTGTGCG 59.116 44.000 8.92 0.00 36.76 5.34
377 482 6.118170 GTCTATACCCCTATATAGTGTGCGA 58.882 44.000 8.92 2.59 36.76 5.10
378 483 6.600822 GTCTATACCCCTATATAGTGTGCGAA 59.399 42.308 8.92 0.00 36.76 4.70
379 484 7.284944 GTCTATACCCCTATATAGTGTGCGAAT 59.715 40.741 8.92 0.21 36.76 3.34
380 485 8.496916 TCTATACCCCTATATAGTGTGCGAATA 58.503 37.037 8.92 1.18 36.76 1.75
381 486 7.966339 ATACCCCTATATAGTGTGCGAATAA 57.034 36.000 8.92 0.00 0.00 1.40
382 487 6.869206 ACCCCTATATAGTGTGCGAATAAT 57.131 37.500 8.92 0.00 0.00 1.28
383 488 7.253905 ACCCCTATATAGTGTGCGAATAATT 57.746 36.000 8.92 0.00 0.00 1.40
384 489 7.686434 ACCCCTATATAGTGTGCGAATAATTT 58.314 34.615 8.92 0.00 0.00 1.82
385 490 8.161425 ACCCCTATATAGTGTGCGAATAATTTT 58.839 33.333 8.92 0.00 0.00 1.82
386 491 8.450964 CCCCTATATAGTGTGCGAATAATTTTG 58.549 37.037 8.92 0.00 0.00 2.44
387 492 9.214957 CCCTATATAGTGTGCGAATAATTTTGA 57.785 33.333 8.92 0.00 0.00 2.69
391 496 7.740519 ATAGTGTGCGAATAATTTTGAAAGC 57.259 32.000 0.00 0.00 0.00 3.51
392 497 5.772521 AGTGTGCGAATAATTTTGAAAGCT 58.227 33.333 0.00 0.00 0.00 3.74
393 498 5.630680 AGTGTGCGAATAATTTTGAAAGCTG 59.369 36.000 0.00 0.00 0.00 4.24
394 499 4.922692 TGTGCGAATAATTTTGAAAGCTGG 59.077 37.500 0.00 0.00 0.00 4.85
395 500 4.923281 GTGCGAATAATTTTGAAAGCTGGT 59.077 37.500 0.00 0.00 0.00 4.00
396 501 5.060940 GTGCGAATAATTTTGAAAGCTGGTC 59.939 40.000 0.00 0.00 0.00 4.02
397 502 4.262976 GCGAATAATTTTGAAAGCTGGTCG 59.737 41.667 0.00 0.00 0.00 4.79
398 503 5.390613 CGAATAATTTTGAAAGCTGGTCGT 58.609 37.500 0.00 0.00 0.00 4.34
399 504 5.856455 CGAATAATTTTGAAAGCTGGTCGTT 59.144 36.000 0.00 0.00 0.00 3.85
400 505 6.183359 CGAATAATTTTGAAAGCTGGTCGTTG 60.183 38.462 0.00 0.00 0.00 4.10
401 506 2.861462 TTTTGAAAGCTGGTCGTTGG 57.139 45.000 0.00 0.00 0.00 3.77
402 507 2.045561 TTTGAAAGCTGGTCGTTGGA 57.954 45.000 0.00 0.00 0.00 3.53
403 508 2.270352 TTGAAAGCTGGTCGTTGGAT 57.730 45.000 0.00 0.00 0.00 3.41
404 509 3.410631 TTGAAAGCTGGTCGTTGGATA 57.589 42.857 0.00 0.00 0.00 2.59
405 510 3.410631 TGAAAGCTGGTCGTTGGATAA 57.589 42.857 0.00 0.00 0.00 1.75
406 511 3.745799 TGAAAGCTGGTCGTTGGATAAA 58.254 40.909 0.00 0.00 0.00 1.40
407 512 3.751175 TGAAAGCTGGTCGTTGGATAAAG 59.249 43.478 0.00 0.00 0.00 1.85
408 513 1.739067 AGCTGGTCGTTGGATAAAGC 58.261 50.000 0.00 0.00 0.00 3.51
409 514 0.733150 GCTGGTCGTTGGATAAAGCC 59.267 55.000 0.00 0.00 0.00 4.35
410 515 1.948611 GCTGGTCGTTGGATAAAGCCA 60.949 52.381 0.00 0.00 35.78 4.75
411 516 2.432444 CTGGTCGTTGGATAAAGCCAA 58.568 47.619 0.00 0.00 45.28 4.52
420 525 2.375146 GGATAAAGCCAATCCAACGGT 58.625 47.619 5.01 0.00 42.21 4.83
421 526 3.547746 GGATAAAGCCAATCCAACGGTA 58.452 45.455 5.01 0.00 42.21 4.02
422 527 3.314357 GGATAAAGCCAATCCAACGGTAC 59.686 47.826 5.01 0.00 42.21 3.34
423 528 2.279935 AAAGCCAATCCAACGGTACA 57.720 45.000 0.00 0.00 0.00 2.90
424 529 1.821216 AAGCCAATCCAACGGTACAG 58.179 50.000 0.00 0.00 0.00 2.74
425 530 0.981183 AGCCAATCCAACGGTACAGA 59.019 50.000 0.00 0.00 0.00 3.41
426 531 1.066143 AGCCAATCCAACGGTACAGAG 60.066 52.381 0.00 0.00 0.00 3.35
427 532 1.066430 GCCAATCCAACGGTACAGAGA 60.066 52.381 0.00 0.00 0.00 3.10
428 533 2.420129 GCCAATCCAACGGTACAGAGAT 60.420 50.000 0.00 0.00 0.00 2.75
429 534 3.198068 CCAATCCAACGGTACAGAGATG 58.802 50.000 0.00 0.00 0.00 2.90
430 535 3.198068 CAATCCAACGGTACAGAGATGG 58.802 50.000 0.00 5.58 0.00 3.51
431 536 0.535335 TCCAACGGTACAGAGATGGC 59.465 55.000 0.00 0.00 0.00 4.40
432 537 0.249120 CCAACGGTACAGAGATGGCA 59.751 55.000 0.00 0.00 0.00 4.92
433 538 1.338674 CCAACGGTACAGAGATGGCAA 60.339 52.381 0.00 0.00 0.00 4.52
434 539 2.422597 CAACGGTACAGAGATGGCAAA 58.577 47.619 0.00 0.00 0.00 3.68
435 540 3.009723 CAACGGTACAGAGATGGCAAAT 58.990 45.455 0.00 0.00 0.00 2.32
436 541 3.350219 ACGGTACAGAGATGGCAAATT 57.650 42.857 0.00 0.00 0.00 1.82
437 542 3.270877 ACGGTACAGAGATGGCAAATTC 58.729 45.455 0.00 0.00 0.00 2.17
438 543 2.285220 CGGTACAGAGATGGCAAATTCG 59.715 50.000 0.00 0.00 0.00 3.34
439 544 3.531538 GGTACAGAGATGGCAAATTCGA 58.468 45.455 0.00 0.00 0.00 3.71
440 545 3.557595 GGTACAGAGATGGCAAATTCGAG 59.442 47.826 0.00 0.00 0.00 4.04
441 546 2.012673 ACAGAGATGGCAAATTCGAGC 58.987 47.619 0.00 0.00 0.00 5.03
442 547 2.011947 CAGAGATGGCAAATTCGAGCA 58.988 47.619 0.00 0.00 0.00 4.26
443 548 2.012673 AGAGATGGCAAATTCGAGCAC 58.987 47.619 0.00 0.00 0.00 4.40
444 549 2.012673 GAGATGGCAAATTCGAGCACT 58.987 47.619 0.00 0.00 0.00 4.40
445 550 3.118629 AGAGATGGCAAATTCGAGCACTA 60.119 43.478 0.00 0.00 0.00 2.74
446 551 2.939103 AGATGGCAAATTCGAGCACTAC 59.061 45.455 0.00 0.00 0.00 2.73
447 552 2.472695 TGGCAAATTCGAGCACTACT 57.527 45.000 0.00 0.00 0.00 2.57
448 553 2.076100 TGGCAAATTCGAGCACTACTG 58.924 47.619 0.00 0.00 0.00 2.74
449 554 1.398390 GGCAAATTCGAGCACTACTGG 59.602 52.381 0.00 0.00 0.00 4.00
450 555 1.202076 GCAAATTCGAGCACTACTGGC 60.202 52.381 0.00 0.00 0.00 4.85
451 556 1.398390 CAAATTCGAGCACTACTGGCC 59.602 52.381 0.00 0.00 0.00 5.36
452 557 0.460284 AATTCGAGCACTACTGGCCG 60.460 55.000 0.00 0.00 0.00 6.13
453 558 1.605058 ATTCGAGCACTACTGGCCGT 61.605 55.000 0.00 1.25 0.00 5.68
454 559 1.812686 TTCGAGCACTACTGGCCGTT 61.813 55.000 0.00 0.00 0.00 4.44
455 560 2.094659 CGAGCACTACTGGCCGTTG 61.095 63.158 0.00 2.87 0.00 4.10
456 561 1.741770 GAGCACTACTGGCCGTTGG 60.742 63.158 0.00 0.00 0.00 3.77
457 562 2.167398 GAGCACTACTGGCCGTTGGA 62.167 60.000 0.00 0.00 0.00 3.53
458 563 1.078426 GCACTACTGGCCGTTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
459 564 0.177141 GCACTACTGGCCGTTGGATA 59.823 55.000 0.00 0.00 0.00 2.59
460 565 1.202651 GCACTACTGGCCGTTGGATAT 60.203 52.381 0.00 0.00 0.00 1.63
461 566 2.755650 CACTACTGGCCGTTGGATATC 58.244 52.381 0.00 0.00 0.00 1.63
462 567 2.102420 CACTACTGGCCGTTGGATATCA 59.898 50.000 4.83 0.00 0.00 2.15
463 568 2.972713 ACTACTGGCCGTTGGATATCAT 59.027 45.455 4.83 0.00 0.00 2.45
464 569 2.550830 ACTGGCCGTTGGATATCATC 57.449 50.000 4.83 0.00 0.00 2.92
465 570 2.050144 ACTGGCCGTTGGATATCATCT 58.950 47.619 4.83 0.00 0.00 2.90
466 571 3.239449 ACTGGCCGTTGGATATCATCTA 58.761 45.455 4.83 0.00 0.00 1.98
467 572 3.006967 ACTGGCCGTTGGATATCATCTAC 59.993 47.826 4.83 0.00 0.00 2.59
468 573 2.969262 TGGCCGTTGGATATCATCTACA 59.031 45.455 4.83 0.00 0.00 2.74
469 574 3.582647 TGGCCGTTGGATATCATCTACAT 59.417 43.478 4.83 0.00 0.00 2.29
470 575 4.041567 TGGCCGTTGGATATCATCTACATT 59.958 41.667 4.83 0.00 0.00 2.71
471 576 4.631813 GGCCGTTGGATATCATCTACATTC 59.368 45.833 4.83 0.00 0.00 2.67
472 577 4.631813 GCCGTTGGATATCATCTACATTCC 59.368 45.833 4.83 0.00 0.00 3.01
473 578 5.793817 CCGTTGGATATCATCTACATTCCA 58.206 41.667 4.83 0.00 0.00 3.53
474 579 5.639506 CCGTTGGATATCATCTACATTCCAC 59.360 44.000 4.83 0.00 33.20 4.02
475 580 6.459066 CGTTGGATATCATCTACATTCCACT 58.541 40.000 4.83 0.00 33.20 4.00
476 581 7.309805 CCGTTGGATATCATCTACATTCCACTA 60.310 40.741 4.83 0.00 33.20 2.74
477 582 7.757173 CGTTGGATATCATCTACATTCCACTAG 59.243 40.741 4.83 0.00 33.20 2.57
478 583 8.807118 GTTGGATATCATCTACATTCCACTAGA 58.193 37.037 4.83 0.00 33.20 2.43
479 584 9.552695 TTGGATATCATCTACATTCCACTAGAT 57.447 33.333 4.83 0.00 33.20 1.98
480 585 9.552695 TGGATATCATCTACATTCCACTAGATT 57.447 33.333 4.83 0.00 28.85 2.40
484 589 6.753180 TCATCTACATTCCACTAGATTCTGC 58.247 40.000 0.00 0.00 28.85 4.26
485 590 5.537300 TCTACATTCCACTAGATTCTGCC 57.463 43.478 0.00 0.00 0.00 4.85
486 591 4.962362 TCTACATTCCACTAGATTCTGCCA 59.038 41.667 0.00 0.00 0.00 4.92
487 592 3.878778 ACATTCCACTAGATTCTGCCAC 58.121 45.455 0.00 0.00 0.00 5.01
488 593 3.264193 ACATTCCACTAGATTCTGCCACA 59.736 43.478 0.00 0.00 0.00 4.17
489 594 4.080129 ACATTCCACTAGATTCTGCCACAT 60.080 41.667 0.00 0.00 0.00 3.21
490 595 3.548745 TCCACTAGATTCTGCCACATG 57.451 47.619 0.00 0.00 0.00 3.21
491 596 2.840038 TCCACTAGATTCTGCCACATGT 59.160 45.455 0.00 0.00 0.00 3.21
492 597 4.030216 TCCACTAGATTCTGCCACATGTA 58.970 43.478 0.00 0.00 0.00 2.29
493 598 4.122776 CCACTAGATTCTGCCACATGTAC 58.877 47.826 0.00 0.00 0.00 2.90
494 599 4.383010 CCACTAGATTCTGCCACATGTACA 60.383 45.833 0.00 0.00 0.00 2.90
495 600 5.178061 CACTAGATTCTGCCACATGTACAA 58.822 41.667 0.00 0.00 0.00 2.41
496 601 5.819379 CACTAGATTCTGCCACATGTACAAT 59.181 40.000 0.00 0.00 0.00 2.71
497 602 6.018425 CACTAGATTCTGCCACATGTACAATC 60.018 42.308 0.00 1.68 0.00 2.67
498 603 5.108187 AGATTCTGCCACATGTACAATCT 57.892 39.130 0.00 3.97 0.00 2.40
499 604 6.239217 AGATTCTGCCACATGTACAATCTA 57.761 37.500 0.00 0.00 29.36 1.98
500 605 6.286758 AGATTCTGCCACATGTACAATCTAG 58.713 40.000 0.00 0.00 29.36 2.43
501 606 5.675684 TTCTGCCACATGTACAATCTAGA 57.324 39.130 0.00 0.00 0.00 2.43
502 607 5.675684 TCTGCCACATGTACAATCTAGAA 57.324 39.130 0.00 0.00 0.00 2.10
503 608 5.664457 TCTGCCACATGTACAATCTAGAAG 58.336 41.667 0.00 0.00 0.00 2.85
504 609 5.422012 TCTGCCACATGTACAATCTAGAAGA 59.578 40.000 0.00 0.00 0.00 2.87
505 610 5.419542 TGCCACATGTACAATCTAGAAGAC 58.580 41.667 0.00 0.00 0.00 3.01
506 611 5.187772 TGCCACATGTACAATCTAGAAGACT 59.812 40.000 0.00 0.00 0.00 3.24
507 612 5.751028 GCCACATGTACAATCTAGAAGACTC 59.249 44.000 0.00 0.00 0.00 3.36
508 613 6.276847 CCACATGTACAATCTAGAAGACTCC 58.723 44.000 0.00 0.00 0.00 3.85
509 614 6.127338 CCACATGTACAATCTAGAAGACTCCA 60.127 42.308 0.00 0.00 0.00 3.86
510 615 7.418368 CCACATGTACAATCTAGAAGACTCCAT 60.418 40.741 0.00 0.00 0.00 3.41
511 616 7.437565 CACATGTACAATCTAGAAGACTCCATG 59.562 40.741 0.00 14.79 0.00 3.66
512 617 6.471233 TGTACAATCTAGAAGACTCCATGG 57.529 41.667 4.97 4.97 0.00 3.66
513 618 5.958380 TGTACAATCTAGAAGACTCCATGGT 59.042 40.000 12.58 0.00 0.00 3.55
514 619 6.440647 TGTACAATCTAGAAGACTCCATGGTT 59.559 38.462 12.58 0.00 0.00 3.67
515 620 5.738909 ACAATCTAGAAGACTCCATGGTTG 58.261 41.667 12.58 8.75 0.00 3.77
516 621 5.485353 ACAATCTAGAAGACTCCATGGTTGA 59.515 40.000 12.58 0.00 0.00 3.18
517 622 6.013379 ACAATCTAGAAGACTCCATGGTTGAA 60.013 38.462 12.58 0.00 0.00 2.69
518 623 5.407407 TCTAGAAGACTCCATGGTTGAAC 57.593 43.478 12.58 6.52 0.00 3.18
519 624 5.087323 TCTAGAAGACTCCATGGTTGAACT 58.913 41.667 12.58 8.25 0.00 3.01
520 625 4.713792 AGAAGACTCCATGGTTGAACTT 57.286 40.909 12.58 15.01 0.00 2.66
521 626 5.825593 AGAAGACTCCATGGTTGAACTTA 57.174 39.130 12.58 0.00 0.00 2.24
522 627 6.187727 AGAAGACTCCATGGTTGAACTTAA 57.812 37.500 12.58 0.00 0.00 1.85
523 628 6.234177 AGAAGACTCCATGGTTGAACTTAAG 58.766 40.000 12.58 0.00 0.00 1.85
524 629 4.327680 AGACTCCATGGTTGAACTTAAGC 58.672 43.478 12.58 0.00 0.00 3.09
525 630 4.072131 GACTCCATGGTTGAACTTAAGCA 58.928 43.478 12.58 0.00 41.63 3.91
526 631 4.666512 ACTCCATGGTTGAACTTAAGCAT 58.333 39.130 12.58 0.00 46.36 3.79
527 632 5.815581 ACTCCATGGTTGAACTTAAGCATA 58.184 37.500 12.58 0.00 44.36 3.14
528 633 6.245408 ACTCCATGGTTGAACTTAAGCATAA 58.755 36.000 12.58 0.00 44.36 1.90
529 634 6.891908 ACTCCATGGTTGAACTTAAGCATAAT 59.108 34.615 12.58 0.00 44.36 1.28
530 635 7.099266 TCCATGGTTGAACTTAAGCATAATG 57.901 36.000 12.58 0.00 44.36 1.90
531 636 5.750067 CCATGGTTGAACTTAAGCATAATGC 59.250 40.000 2.57 0.00 44.36 3.56
563 668 5.405935 AAAAACAAGCACTTCTCCTTTGT 57.594 34.783 0.00 0.00 0.00 2.83
564 669 5.405935 AAAACAAGCACTTCTCCTTTGTT 57.594 34.783 0.00 0.00 0.00 2.83
565 670 4.639135 AACAAGCACTTCTCCTTTGTTC 57.361 40.909 0.00 0.00 0.00 3.18
566 671 3.891049 ACAAGCACTTCTCCTTTGTTCT 58.109 40.909 0.00 0.00 0.00 3.01
567 672 3.879892 ACAAGCACTTCTCCTTTGTTCTC 59.120 43.478 0.00 0.00 0.00 2.87
568 673 4.133078 CAAGCACTTCTCCTTTGTTCTCT 58.867 43.478 0.00 0.00 0.00 3.10
569 674 5.163301 ACAAGCACTTCTCCTTTGTTCTCTA 60.163 40.000 0.00 0.00 0.00 2.43
570 675 5.146010 AGCACTTCTCCTTTGTTCTCTAG 57.854 43.478 0.00 0.00 0.00 2.43
571 676 4.835615 AGCACTTCTCCTTTGTTCTCTAGA 59.164 41.667 0.00 0.00 0.00 2.43
572 677 5.305644 AGCACTTCTCCTTTGTTCTCTAGAA 59.694 40.000 0.00 0.00 0.00 2.10
573 678 6.013812 AGCACTTCTCCTTTGTTCTCTAGAAT 60.014 38.462 0.00 0.00 36.33 2.40
574 679 6.312672 GCACTTCTCCTTTGTTCTCTAGAATC 59.687 42.308 0.00 0.00 36.33 2.52
575 680 7.610865 CACTTCTCCTTTGTTCTCTAGAATCT 58.389 38.462 0.00 0.00 36.33 2.40
576 681 8.093927 CACTTCTCCTTTGTTCTCTAGAATCTT 58.906 37.037 0.00 0.00 36.33 2.40
577 682 8.311109 ACTTCTCCTTTGTTCTCTAGAATCTTC 58.689 37.037 0.00 0.00 36.33 2.87
578 683 7.176589 TCTCCTTTGTTCTCTAGAATCTTCC 57.823 40.000 0.00 0.00 36.33 3.46
579 684 6.726299 TCTCCTTTGTTCTCTAGAATCTTCCA 59.274 38.462 0.00 0.00 36.33 3.53
580 685 7.401493 TCTCCTTTGTTCTCTAGAATCTTCCAT 59.599 37.037 0.00 0.00 36.33 3.41
581 686 8.609617 TCCTTTGTTCTCTAGAATCTTCCATA 57.390 34.615 0.00 0.00 36.33 2.74
582 687 9.218525 TCCTTTGTTCTCTAGAATCTTCCATAT 57.781 33.333 0.00 0.00 36.33 1.78
649 754 9.534565 TGTTTTTACTTTATGCTTTACAATGCA 57.465 25.926 5.16 5.16 42.24 3.96
650 755 9.791838 GTTTTTACTTTATGCTTTACAATGCAC 57.208 29.630 4.83 0.00 41.09 4.57
651 756 9.534565 TTTTTACTTTATGCTTTACAATGCACA 57.465 25.926 4.83 0.00 41.09 4.57
652 757 9.534565 TTTTACTTTATGCTTTACAATGCACAA 57.465 25.926 4.83 0.00 41.09 3.33
653 758 9.703892 TTTACTTTATGCTTTACAATGCACAAT 57.296 25.926 4.83 0.00 41.09 2.71
654 759 9.703892 TTACTTTATGCTTTACAATGCACAATT 57.296 25.926 4.83 0.38 41.09 2.32
655 760 8.243289 ACTTTATGCTTTACAATGCACAATTC 57.757 30.769 4.83 0.00 41.09 2.17
656 761 7.331687 ACTTTATGCTTTACAATGCACAATTCC 59.668 33.333 4.83 0.00 41.09 3.01
657 762 4.597404 TGCTTTACAATGCACAATTCCA 57.403 36.364 0.00 0.00 34.62 3.53
658 763 5.149973 TGCTTTACAATGCACAATTCCAT 57.850 34.783 0.00 0.00 34.62 3.41
659 764 4.930405 TGCTTTACAATGCACAATTCCATG 59.070 37.500 0.00 0.00 34.62 3.66
660 765 5.170021 GCTTTACAATGCACAATTCCATGA 58.830 37.500 0.00 0.00 0.00 3.07
661 766 5.638657 GCTTTACAATGCACAATTCCATGAA 59.361 36.000 0.00 0.00 0.00 2.57
662 767 6.314400 GCTTTACAATGCACAATTCCATGAAT 59.686 34.615 0.00 0.00 33.25 2.57
663 768 7.464977 GCTTTACAATGCACAATTCCATGAATC 60.465 37.037 0.00 0.00 30.29 2.52
664 769 5.670792 ACAATGCACAATTCCATGAATCT 57.329 34.783 0.00 0.00 30.29 2.40
665 770 6.045072 ACAATGCACAATTCCATGAATCTT 57.955 33.333 0.00 0.00 30.29 2.40
666 771 7.172868 ACAATGCACAATTCCATGAATCTTA 57.827 32.000 0.00 0.00 30.29 2.10
667 772 7.613585 ACAATGCACAATTCCATGAATCTTAA 58.386 30.769 0.00 0.00 30.29 1.85
668 773 8.095792 ACAATGCACAATTCCATGAATCTTAAA 58.904 29.630 0.00 0.00 30.29 1.52
669 774 8.937884 CAATGCACAATTCCATGAATCTTAAAA 58.062 29.630 0.00 0.00 30.29 1.52
670 775 9.675464 AATGCACAATTCCATGAATCTTAAAAT 57.325 25.926 0.00 0.00 30.29 1.82
672 777 9.806203 TGCACAATTCCATGAATCTTAAAATAG 57.194 29.630 0.00 0.00 30.29 1.73
713 818 9.471702 ACTAATTGATTTTGGATGAGATGAACT 57.528 29.630 0.00 0.00 0.00 3.01
744 849 9.929722 GAATTAAACGAACATCTACATTATGCA 57.070 29.630 0.00 0.00 0.00 3.96
767 872 8.506437 TGCATATATGACTTAAAGCTTACATGC 58.494 33.333 17.10 0.00 34.58 4.06
768 873 8.725148 GCATATATGACTTAAAGCTTACATGCT 58.275 33.333 17.10 0.00 46.40 3.79
774 879 8.648557 TGACTTAAAGCTTACATGCTATAGTG 57.351 34.615 0.00 0.00 43.24 2.74
775 880 8.258007 TGACTTAAAGCTTACATGCTATAGTGT 58.742 33.333 0.00 1.50 43.24 3.55
776 881 8.425577 ACTTAAAGCTTACATGCTATAGTGTG 57.574 34.615 0.00 3.54 43.24 3.82
777 882 7.495934 ACTTAAAGCTTACATGCTATAGTGTGG 59.504 37.037 0.00 0.00 43.24 4.17
778 883 5.359194 AAGCTTACATGCTATAGTGTGGT 57.641 39.130 0.00 0.00 43.24 4.16
779 884 6.479972 AAGCTTACATGCTATAGTGTGGTA 57.520 37.500 0.00 0.00 43.24 3.25
780 885 6.672266 AGCTTACATGCTATAGTGTGGTAT 57.328 37.500 0.84 0.00 42.10 2.73
781 886 7.067496 AGCTTACATGCTATAGTGTGGTATT 57.933 36.000 0.84 0.00 42.10 1.89
782 887 7.509546 AGCTTACATGCTATAGTGTGGTATTT 58.490 34.615 0.84 0.00 42.10 1.40
783 888 7.993183 AGCTTACATGCTATAGTGTGGTATTTT 59.007 33.333 0.84 0.00 42.10 1.82
784 889 8.621286 GCTTACATGCTATAGTGTGGTATTTTT 58.379 33.333 0.84 0.00 0.00 1.94
811 916 3.907894 TTTGGTTACCAAATCTCGTGC 57.092 42.857 23.91 0.00 46.92 5.34
812 917 1.434555 TGGTTACCAAATCTCGTGCG 58.565 50.000 0.00 0.00 0.00 5.34
813 918 1.270412 TGGTTACCAAATCTCGTGCGT 60.270 47.619 0.00 0.00 0.00 5.24
814 919 1.127951 GGTTACCAAATCTCGTGCGTG 59.872 52.381 0.00 0.00 0.00 5.34
815 920 0.793861 TTACCAAATCTCGTGCGTGC 59.206 50.000 0.00 0.00 0.00 5.34
816 921 1.348538 TACCAAATCTCGTGCGTGCG 61.349 55.000 0.00 0.00 0.00 5.34
817 922 2.379634 CCAAATCTCGTGCGTGCGA 61.380 57.895 0.00 3.73 39.22 5.10
818 923 1.695893 CCAAATCTCGTGCGTGCGAT 61.696 55.000 4.15 0.00 40.29 4.58
819 924 0.314578 CAAATCTCGTGCGTGCGATC 60.315 55.000 4.15 0.00 40.29 3.69
820 925 1.421410 AAATCTCGTGCGTGCGATCC 61.421 55.000 4.15 0.00 40.29 3.36
821 926 2.557059 AATCTCGTGCGTGCGATCCA 62.557 55.000 4.15 0.00 40.29 3.41
822 927 3.545481 CTCGTGCGTGCGATCCAC 61.545 66.667 4.15 4.71 40.29 4.02
834 939 0.809385 CGATCCACGTGTACACTCCT 59.191 55.000 23.01 3.33 37.22 3.69
840 945 3.504906 TCCACGTGTACACTCCTTAGAAG 59.495 47.826 23.01 7.25 0.00 2.85
871 976 7.065204 GGAGAAGAAACAAAATACTAGCCTCTG 59.935 40.741 0.00 0.00 0.00 3.35
893 998 1.618861 AACTTCGAGAGTTCGCATCG 58.381 50.000 7.04 0.00 45.40 3.84
1170 1279 3.991318 GGTCCCATTGGGTGCCCA 61.991 66.667 21.31 5.73 44.74 5.36
1203 1312 2.595463 GTGCTGCTCAAGTGGGCA 60.595 61.111 5.59 5.59 36.94 5.36
1318 1428 4.832248 AGATTAGGTCTTGCGATTGTTCA 58.168 39.130 0.00 0.00 31.47 3.18
1399 1509 4.625800 CCTTCTTGGCTTCTCCCG 57.374 61.111 0.00 0.00 0.00 5.14
1629 1739 2.466846 AGGCTATTTCCGGGCAAAAAT 58.533 42.857 0.00 2.51 0.00 1.82
1783 1893 6.569179 TTAGCCTTGTGGTTAGAATTTGAC 57.431 37.500 0.00 0.00 35.27 3.18
1836 1946 3.957497 AGTGGTTGCACTGATGGTTAAAA 59.043 39.130 0.00 0.00 33.58 1.52
1916 2031 9.193806 ACCTGTATTCAGATATGCTTTTGAAAT 57.806 29.630 0.12 0.00 43.76 2.17
1952 2067 3.674997 TCCTGAACTATTGTGCTTGGTC 58.325 45.455 0.00 0.00 0.00 4.02
2022 2137 9.772973 ATATTAAACCCTGAACTTTCAAAAACC 57.227 29.630 0.00 0.00 36.64 3.27
2109 2224 1.895131 GACCCTGAAATGCACAACCAT 59.105 47.619 0.00 0.00 0.00 3.55
2406 2527 3.659786 TGTGTAGAAGTATGTGTGCACC 58.340 45.455 15.69 6.37 0.00 5.01
2565 2686 3.313526 CCGACAGAGCCAAAATAATGGAG 59.686 47.826 0.00 0.00 43.54 3.86
2715 4614 5.718290 GCGATATGTTTGCGTTCATTTGTTG 60.718 40.000 0.00 0.00 0.00 3.33
2827 4750 5.819991 ACATTTTCCTTGCCAGAGAGATAA 58.180 37.500 0.00 0.00 0.00 1.75
2949 4872 1.141053 ACCGAGCTGAACTTGAACCTT 59.859 47.619 0.00 0.00 30.27 3.50
3071 4994 3.183793 AGTGTTTTAACCGTCGACCTT 57.816 42.857 10.58 4.15 0.00 3.50
3072 4995 4.320608 AGTGTTTTAACCGTCGACCTTA 57.679 40.909 10.58 3.12 0.00 2.69
3073 4996 4.886579 AGTGTTTTAACCGTCGACCTTAT 58.113 39.130 10.58 0.00 0.00 1.73
3075 4998 5.863935 AGTGTTTTAACCGTCGACCTTATAC 59.136 40.000 10.58 7.85 0.00 1.47
3078 5001 7.218963 GTGTTTTAACCGTCGACCTTATACTAG 59.781 40.741 10.58 0.00 0.00 2.57
3161 5087 2.795960 AGGTCCCTGGAGTAGCCTTATA 59.204 50.000 0.00 0.00 37.63 0.98
3194 5120 2.486472 AGCTTGTATCTGCTGTGCTT 57.514 45.000 0.00 0.00 38.21 3.91
3367 5293 2.203070 GATCGGCGCCCTCAATGT 60.203 61.111 23.46 0.00 0.00 2.71
3414 5340 1.350310 AACGGGACCCACAGTTTCCT 61.350 55.000 12.15 0.00 0.00 3.36
3452 5378 8.730680 TCTTTTATTGAGAGCAACCTACATTTC 58.269 33.333 0.00 0.00 36.72 2.17
3620 5558 0.756294 TGGCGACACTGTATATGGGG 59.244 55.000 0.00 0.00 33.40 4.96
3662 5600 5.799936 CCTAAATGTTTGCATTCAAGTACCG 59.200 40.000 0.00 0.00 43.89 4.02
3745 5683 7.984422 ACAATGTGACTCAATGATCACTTTA 57.016 32.000 18.99 6.91 44.59 1.85
3775 5713 8.702819 CATCTGATCCTCCATGCTAGATATAAA 58.297 37.037 0.00 0.00 0.00 1.40
3814 5752 1.199097 CCCACATACGTTTCTGGTTGC 59.801 52.381 0.00 0.00 0.00 4.17
3897 5835 6.139671 TCCTCCCTGCTAGATATAATCCATC 58.860 44.000 0.00 0.00 0.00 3.51
3937 5876 0.249447 CTGAGTCAACGCTGGTCACA 60.249 55.000 0.00 0.00 0.00 3.58
4032 5971 3.963383 GAGTTTCAACTCGGAAAGCAA 57.037 42.857 3.96 0.00 45.11 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.559533 TGTTGCAAATAAATTATCCTCCAGCTA 59.440 33.333 0.00 0.00 0.00 3.32
10 11 7.364585 CCCTTGTTGCAAATAAATTATCCTCCA 60.365 37.037 0.00 0.00 0.00 3.86
12 13 7.492344 CACCCTTGTTGCAAATAAATTATCCTC 59.508 37.037 0.00 0.00 0.00 3.71
74 81 0.392706 TCATTGTGCACCGTCTGTCT 59.607 50.000 15.69 0.00 0.00 3.41
76 83 1.221466 CGTCATTGTGCACCGTCTGT 61.221 55.000 15.69 0.00 0.00 3.41
77 84 0.943835 TCGTCATTGTGCACCGTCTG 60.944 55.000 15.69 6.55 0.00 3.51
78 85 0.037326 ATCGTCATTGTGCACCGTCT 60.037 50.000 15.69 0.00 0.00 4.18
79 86 1.588404 CTATCGTCATTGTGCACCGTC 59.412 52.381 15.69 0.00 0.00 4.79
80 87 1.640428 CTATCGTCATTGTGCACCGT 58.360 50.000 15.69 0.00 0.00 4.83
195 289 9.126151 TGACAACACAAATCTTGTTATCCTAAA 57.874 29.630 0.00 0.00 43.23 1.85
196 290 8.684386 TGACAACACAAATCTTGTTATCCTAA 57.316 30.769 0.00 0.00 43.23 2.69
197 291 8.729756 CATGACAACACAAATCTTGTTATCCTA 58.270 33.333 0.00 0.00 43.23 2.94
198 292 7.448161 TCATGACAACACAAATCTTGTTATCCT 59.552 33.333 0.00 0.00 43.23 3.24
199 293 7.592938 TCATGACAACACAAATCTTGTTATCC 58.407 34.615 0.00 0.00 43.23 2.59
200 294 9.069078 CATCATGACAACACAAATCTTGTTATC 57.931 33.333 0.00 0.00 43.23 1.75
201 295 8.795513 TCATCATGACAACACAAATCTTGTTAT 58.204 29.630 0.00 0.00 43.23 1.89
202 296 8.164058 TCATCATGACAACACAAATCTTGTTA 57.836 30.769 0.00 0.00 43.23 2.41
203 297 7.041635 TCATCATGACAACACAAATCTTGTT 57.958 32.000 0.00 0.00 43.23 2.83
204 298 6.638096 TCATCATGACAACACAAATCTTGT 57.362 33.333 0.00 0.00 46.75 3.16
205 299 7.325338 GTCTTCATCATGACAACACAAATCTTG 59.675 37.037 0.00 0.00 33.75 3.02
206 300 7.365741 GTCTTCATCATGACAACACAAATCTT 58.634 34.615 0.00 0.00 33.75 2.40
207 301 6.347969 CGTCTTCATCATGACAACACAAATCT 60.348 38.462 0.00 0.00 33.18 2.40
208 302 5.791974 CGTCTTCATCATGACAACACAAATC 59.208 40.000 0.00 0.00 33.18 2.17
209 303 5.239306 ACGTCTTCATCATGACAACACAAAT 59.761 36.000 0.00 0.00 33.18 2.32
210 304 4.574421 ACGTCTTCATCATGACAACACAAA 59.426 37.500 0.00 0.00 33.18 2.83
211 305 4.024977 CACGTCTTCATCATGACAACACAA 60.025 41.667 0.00 0.00 33.18 3.33
212 306 3.494251 CACGTCTTCATCATGACAACACA 59.506 43.478 0.00 0.00 33.18 3.72
213 307 3.665323 GCACGTCTTCATCATGACAACAC 60.665 47.826 0.00 0.00 33.18 3.32
214 308 2.480037 GCACGTCTTCATCATGACAACA 59.520 45.455 0.00 0.00 33.18 3.33
215 309 2.738846 AGCACGTCTTCATCATGACAAC 59.261 45.455 0.00 0.00 33.18 3.32
216 310 2.995939 GAGCACGTCTTCATCATGACAA 59.004 45.455 0.00 0.00 33.18 3.18
217 311 2.610433 GAGCACGTCTTCATCATGACA 58.390 47.619 0.00 0.00 33.18 3.58
218 312 1.585668 CGAGCACGTCTTCATCATGAC 59.414 52.381 0.00 0.00 34.56 3.06
219 313 1.913317 CGAGCACGTCTTCATCATGA 58.087 50.000 0.00 0.00 34.56 3.07
220 314 0.299895 GCGAGCACGTCTTCATCATG 59.700 55.000 5.23 0.00 41.98 3.07
239 333 1.742761 AATCTGACACATCAAGCGGG 58.257 50.000 0.00 0.00 33.30 6.13
273 378 1.001158 CGCCGGCTGGTCTTTTTAAAA 60.001 47.619 26.68 0.00 37.67 1.52
287 392 2.888534 TGCTACGAATTCGCCGGC 60.889 61.111 27.03 25.05 44.43 6.13
314 419 8.655970 GGGCATCTTATGATTTGTTGTTTTAAC 58.344 33.333 0.00 0.00 0.00 2.01
321 426 7.775120 AGTTTAGGGCATCTTATGATTTGTTG 58.225 34.615 0.00 0.00 0.00 3.33
350 455 7.068348 CGCACACTATATAGGGGTATAGACAAT 59.932 40.741 16.40 0.00 37.83 2.71
355 460 7.584122 ATTCGCACACTATATAGGGGTATAG 57.416 40.000 16.40 3.46 39.48 1.31
356 461 9.650714 ATTATTCGCACACTATATAGGGGTATA 57.349 33.333 16.40 6.81 0.00 1.47
357 462 7.966339 TTATTCGCACACTATATAGGGGTAT 57.034 36.000 16.40 7.62 0.00 2.73
358 463 7.966339 ATTATTCGCACACTATATAGGGGTA 57.034 36.000 16.40 1.06 0.00 3.69
359 464 6.869206 ATTATTCGCACACTATATAGGGGT 57.131 37.500 16.40 9.77 0.00 4.95
360 465 8.450964 CAAAATTATTCGCACACTATATAGGGG 58.549 37.037 16.40 9.16 0.00 4.79
361 466 9.214957 TCAAAATTATTCGCACACTATATAGGG 57.785 33.333 10.61 10.61 0.00 3.53
365 470 9.450807 GCTTTCAAAATTATTCGCACACTATAT 57.549 29.630 0.00 0.00 0.00 0.86
366 471 8.673711 AGCTTTCAAAATTATTCGCACACTATA 58.326 29.630 0.00 0.00 0.00 1.31
367 472 7.485913 CAGCTTTCAAAATTATTCGCACACTAT 59.514 33.333 0.00 0.00 0.00 2.12
368 473 6.801377 CAGCTTTCAAAATTATTCGCACACTA 59.199 34.615 0.00 0.00 0.00 2.74
369 474 5.630680 CAGCTTTCAAAATTATTCGCACACT 59.369 36.000 0.00 0.00 0.00 3.55
370 475 5.164061 CCAGCTTTCAAAATTATTCGCACAC 60.164 40.000 0.00 0.00 0.00 3.82
371 476 4.922692 CCAGCTTTCAAAATTATTCGCACA 59.077 37.500 0.00 0.00 0.00 4.57
372 477 4.923281 ACCAGCTTTCAAAATTATTCGCAC 59.077 37.500 0.00 0.00 0.00 5.34
373 478 5.132897 ACCAGCTTTCAAAATTATTCGCA 57.867 34.783 0.00 0.00 0.00 5.10
374 479 4.262976 CGACCAGCTTTCAAAATTATTCGC 59.737 41.667 0.00 0.00 0.00 4.70
375 480 5.390613 ACGACCAGCTTTCAAAATTATTCG 58.609 37.500 0.00 0.00 0.00 3.34
376 481 6.089417 CCAACGACCAGCTTTCAAAATTATTC 59.911 38.462 0.00 0.00 0.00 1.75
377 482 5.925969 CCAACGACCAGCTTTCAAAATTATT 59.074 36.000 0.00 0.00 0.00 1.40
378 483 5.242838 TCCAACGACCAGCTTTCAAAATTAT 59.757 36.000 0.00 0.00 0.00 1.28
379 484 4.580995 TCCAACGACCAGCTTTCAAAATTA 59.419 37.500 0.00 0.00 0.00 1.40
380 485 3.383185 TCCAACGACCAGCTTTCAAAATT 59.617 39.130 0.00 0.00 0.00 1.82
381 486 2.955660 TCCAACGACCAGCTTTCAAAAT 59.044 40.909 0.00 0.00 0.00 1.82
382 487 2.370349 TCCAACGACCAGCTTTCAAAA 58.630 42.857 0.00 0.00 0.00 2.44
383 488 2.045561 TCCAACGACCAGCTTTCAAA 57.954 45.000 0.00 0.00 0.00 2.69
384 489 2.270352 ATCCAACGACCAGCTTTCAA 57.730 45.000 0.00 0.00 0.00 2.69
385 490 3.410631 TTATCCAACGACCAGCTTTCA 57.589 42.857 0.00 0.00 0.00 2.69
386 491 3.426292 GCTTTATCCAACGACCAGCTTTC 60.426 47.826 0.00 0.00 0.00 2.62
387 492 2.488153 GCTTTATCCAACGACCAGCTTT 59.512 45.455 0.00 0.00 0.00 3.51
388 493 2.084546 GCTTTATCCAACGACCAGCTT 58.915 47.619 0.00 0.00 0.00 3.74
389 494 1.679032 GGCTTTATCCAACGACCAGCT 60.679 52.381 0.00 0.00 0.00 4.24
390 495 0.733150 GGCTTTATCCAACGACCAGC 59.267 55.000 0.00 0.00 0.00 4.85
391 496 2.107950 TGGCTTTATCCAACGACCAG 57.892 50.000 0.00 0.00 32.18 4.00
392 497 2.570415 TTGGCTTTATCCAACGACCA 57.430 45.000 0.00 0.00 40.92 4.02
400 505 2.375146 ACCGTTGGATTGGCTTTATCC 58.625 47.619 6.84 6.84 41.63 2.59
401 506 3.942748 TGTACCGTTGGATTGGCTTTATC 59.057 43.478 0.00 0.00 0.00 1.75
402 507 3.945285 CTGTACCGTTGGATTGGCTTTAT 59.055 43.478 0.00 0.00 0.00 1.40
403 508 3.008157 TCTGTACCGTTGGATTGGCTTTA 59.992 43.478 0.00 0.00 0.00 1.85
404 509 2.159382 CTGTACCGTTGGATTGGCTTT 58.841 47.619 0.00 0.00 0.00 3.51
405 510 1.349688 TCTGTACCGTTGGATTGGCTT 59.650 47.619 0.00 0.00 0.00 4.35
406 511 0.981183 TCTGTACCGTTGGATTGGCT 59.019 50.000 0.00 0.00 0.00 4.75
407 512 1.066430 TCTCTGTACCGTTGGATTGGC 60.066 52.381 0.00 0.00 0.00 4.52
408 513 3.198068 CATCTCTGTACCGTTGGATTGG 58.802 50.000 0.00 0.00 0.00 3.16
409 514 3.198068 CCATCTCTGTACCGTTGGATTG 58.802 50.000 0.00 0.00 0.00 2.67
410 515 2.420129 GCCATCTCTGTACCGTTGGATT 60.420 50.000 7.71 0.00 0.00 3.01
411 516 1.139058 GCCATCTCTGTACCGTTGGAT 59.861 52.381 7.71 0.00 0.00 3.41
412 517 0.535335 GCCATCTCTGTACCGTTGGA 59.465 55.000 7.71 0.00 0.00 3.53
413 518 0.249120 TGCCATCTCTGTACCGTTGG 59.751 55.000 0.00 0.00 0.00 3.77
414 519 2.093306 TTGCCATCTCTGTACCGTTG 57.907 50.000 0.00 0.00 0.00 4.10
415 520 2.851263 TTTGCCATCTCTGTACCGTT 57.149 45.000 0.00 0.00 0.00 4.44
416 521 3.270877 GAATTTGCCATCTCTGTACCGT 58.729 45.455 0.00 0.00 0.00 4.83
417 522 2.285220 CGAATTTGCCATCTCTGTACCG 59.715 50.000 0.00 0.00 0.00 4.02
418 523 3.531538 TCGAATTTGCCATCTCTGTACC 58.468 45.455 0.00 0.00 0.00 3.34
419 524 3.001736 GCTCGAATTTGCCATCTCTGTAC 59.998 47.826 0.00 0.00 0.00 2.90
420 525 3.198068 GCTCGAATTTGCCATCTCTGTA 58.802 45.455 0.00 0.00 0.00 2.74
421 526 2.012673 GCTCGAATTTGCCATCTCTGT 58.987 47.619 0.00 0.00 0.00 3.41
422 527 2.011947 TGCTCGAATTTGCCATCTCTG 58.988 47.619 0.00 0.00 0.00 3.35
423 528 2.012673 GTGCTCGAATTTGCCATCTCT 58.987 47.619 0.00 0.00 0.00 3.10
424 529 2.012673 AGTGCTCGAATTTGCCATCTC 58.987 47.619 0.00 0.00 0.00 2.75
425 530 2.119801 AGTGCTCGAATTTGCCATCT 57.880 45.000 0.00 0.00 0.00 2.90
426 531 2.939103 AGTAGTGCTCGAATTTGCCATC 59.061 45.455 0.00 0.00 0.00 3.51
427 532 2.679837 CAGTAGTGCTCGAATTTGCCAT 59.320 45.455 0.00 0.00 0.00 4.40
428 533 2.076100 CAGTAGTGCTCGAATTTGCCA 58.924 47.619 0.00 0.00 0.00 4.92
429 534 1.398390 CCAGTAGTGCTCGAATTTGCC 59.602 52.381 0.00 0.00 0.00 4.52
430 535 1.202076 GCCAGTAGTGCTCGAATTTGC 60.202 52.381 0.00 0.00 0.00 3.68
431 536 1.398390 GGCCAGTAGTGCTCGAATTTG 59.602 52.381 0.00 0.00 0.00 2.32
432 537 1.739067 GGCCAGTAGTGCTCGAATTT 58.261 50.000 0.00 0.00 0.00 1.82
433 538 0.460284 CGGCCAGTAGTGCTCGAATT 60.460 55.000 2.24 0.00 0.00 2.17
434 539 1.141881 CGGCCAGTAGTGCTCGAAT 59.858 57.895 2.24 0.00 0.00 3.34
435 540 1.812686 AACGGCCAGTAGTGCTCGAA 61.813 55.000 2.24 0.00 0.00 3.71
436 541 2.273179 AACGGCCAGTAGTGCTCGA 61.273 57.895 2.24 0.00 0.00 4.04
437 542 2.094659 CAACGGCCAGTAGTGCTCG 61.095 63.158 2.24 8.56 0.00 5.03
438 543 1.741770 CCAACGGCCAGTAGTGCTC 60.742 63.158 2.24 0.00 0.00 4.26
439 544 1.553690 ATCCAACGGCCAGTAGTGCT 61.554 55.000 2.24 0.00 0.00 4.40
440 545 0.177141 TATCCAACGGCCAGTAGTGC 59.823 55.000 2.24 0.00 0.00 4.40
441 546 2.102420 TGATATCCAACGGCCAGTAGTG 59.898 50.000 2.24 0.00 0.00 2.74
442 547 2.394632 TGATATCCAACGGCCAGTAGT 58.605 47.619 2.24 0.00 0.00 2.73
443 548 3.259374 AGATGATATCCAACGGCCAGTAG 59.741 47.826 2.24 0.00 0.00 2.57
444 549 3.239449 AGATGATATCCAACGGCCAGTA 58.761 45.455 2.24 0.00 0.00 2.74
445 550 2.050144 AGATGATATCCAACGGCCAGT 58.950 47.619 2.24 0.00 0.00 4.00
446 551 2.847327 AGATGATATCCAACGGCCAG 57.153 50.000 2.24 0.00 0.00 4.85
447 552 2.969262 TGTAGATGATATCCAACGGCCA 59.031 45.455 2.24 0.00 0.00 5.36
448 553 3.678056 TGTAGATGATATCCAACGGCC 57.322 47.619 0.00 0.00 0.00 6.13
449 554 4.631813 GGAATGTAGATGATATCCAACGGC 59.368 45.833 0.00 0.00 0.00 5.68
450 555 5.639506 GTGGAATGTAGATGATATCCAACGG 59.360 44.000 0.00 0.00 0.00 4.44
451 556 6.459066 AGTGGAATGTAGATGATATCCAACG 58.541 40.000 0.00 0.00 0.00 4.10
452 557 8.807118 TCTAGTGGAATGTAGATGATATCCAAC 58.193 37.037 0.00 0.00 0.00 3.77
453 558 8.956446 TCTAGTGGAATGTAGATGATATCCAA 57.044 34.615 0.00 0.00 0.00 3.53
454 559 9.552695 AATCTAGTGGAATGTAGATGATATCCA 57.447 33.333 0.00 0.00 36.35 3.41
458 563 8.526978 GCAGAATCTAGTGGAATGTAGATGATA 58.473 37.037 0.00 0.00 36.35 2.15
459 564 7.385267 GCAGAATCTAGTGGAATGTAGATGAT 58.615 38.462 0.00 0.00 36.35 2.45
460 565 6.239430 GGCAGAATCTAGTGGAATGTAGATGA 60.239 42.308 0.00 0.00 36.35 2.92
461 566 5.931146 GGCAGAATCTAGTGGAATGTAGATG 59.069 44.000 0.00 0.00 36.35 2.90
462 567 5.604231 TGGCAGAATCTAGTGGAATGTAGAT 59.396 40.000 0.00 0.00 37.56 1.98
463 568 4.962362 TGGCAGAATCTAGTGGAATGTAGA 59.038 41.667 0.00 0.00 0.00 2.59
464 569 5.053145 GTGGCAGAATCTAGTGGAATGTAG 58.947 45.833 0.00 0.00 0.00 2.74
465 570 4.469586 TGTGGCAGAATCTAGTGGAATGTA 59.530 41.667 0.00 0.00 0.00 2.29
466 571 3.264193 TGTGGCAGAATCTAGTGGAATGT 59.736 43.478 0.00 0.00 0.00 2.71
467 572 3.877559 TGTGGCAGAATCTAGTGGAATG 58.122 45.455 0.00 0.00 0.00 2.67
468 573 4.080129 ACATGTGGCAGAATCTAGTGGAAT 60.080 41.667 0.00 0.00 0.00 3.01
469 574 3.264193 ACATGTGGCAGAATCTAGTGGAA 59.736 43.478 0.00 0.00 0.00 3.53
470 575 2.840038 ACATGTGGCAGAATCTAGTGGA 59.160 45.455 0.00 0.00 0.00 4.02
471 576 3.272574 ACATGTGGCAGAATCTAGTGG 57.727 47.619 0.00 0.00 0.00 4.00
472 577 4.758688 TGTACATGTGGCAGAATCTAGTG 58.241 43.478 9.11 0.00 0.00 2.74
473 578 5.420725 TTGTACATGTGGCAGAATCTAGT 57.579 39.130 9.11 0.00 0.00 2.57
474 579 6.286758 AGATTGTACATGTGGCAGAATCTAG 58.713 40.000 14.61 0.00 29.13 2.43
475 580 6.239217 AGATTGTACATGTGGCAGAATCTA 57.761 37.500 14.61 0.00 29.13 1.98
476 581 5.108187 AGATTGTACATGTGGCAGAATCT 57.892 39.130 9.11 10.76 0.00 2.40
477 582 6.283694 TCTAGATTGTACATGTGGCAGAATC 58.716 40.000 9.11 8.60 0.00 2.52
478 583 6.239217 TCTAGATTGTACATGTGGCAGAAT 57.761 37.500 9.11 0.00 0.00 2.40
479 584 5.675684 TCTAGATTGTACATGTGGCAGAA 57.324 39.130 9.11 0.00 0.00 3.02
480 585 5.422012 TCTTCTAGATTGTACATGTGGCAGA 59.578 40.000 9.11 0.00 0.00 4.26
481 586 5.521735 GTCTTCTAGATTGTACATGTGGCAG 59.478 44.000 9.11 0.00 0.00 4.85
482 587 5.187772 AGTCTTCTAGATTGTACATGTGGCA 59.812 40.000 9.11 4.65 0.00 4.92
483 588 5.665459 AGTCTTCTAGATTGTACATGTGGC 58.335 41.667 9.11 1.72 0.00 5.01
484 589 6.127338 TGGAGTCTTCTAGATTGTACATGTGG 60.127 42.308 9.11 0.00 0.00 4.17
485 590 6.867550 TGGAGTCTTCTAGATTGTACATGTG 58.132 40.000 9.11 0.00 0.00 3.21
486 591 7.418368 CCATGGAGTCTTCTAGATTGTACATGT 60.418 40.741 5.56 2.69 31.51 3.21
487 592 6.927936 CCATGGAGTCTTCTAGATTGTACATG 59.072 42.308 5.56 12.88 0.00 3.21
488 593 6.613271 ACCATGGAGTCTTCTAGATTGTACAT 59.387 38.462 21.47 0.00 0.00 2.29
489 594 5.958380 ACCATGGAGTCTTCTAGATTGTACA 59.042 40.000 21.47 0.00 0.00 2.90
490 595 6.472686 ACCATGGAGTCTTCTAGATTGTAC 57.527 41.667 21.47 0.00 0.00 2.90
491 596 6.667848 TCAACCATGGAGTCTTCTAGATTGTA 59.332 38.462 21.47 0.00 0.00 2.41
492 597 5.485353 TCAACCATGGAGTCTTCTAGATTGT 59.515 40.000 21.47 0.00 0.00 2.71
493 598 5.982356 TCAACCATGGAGTCTTCTAGATTG 58.018 41.667 21.47 7.85 0.00 2.67
494 599 6.214412 AGTTCAACCATGGAGTCTTCTAGATT 59.786 38.462 21.47 0.00 0.00 2.40
495 600 5.723887 AGTTCAACCATGGAGTCTTCTAGAT 59.276 40.000 21.47 0.00 0.00 1.98
496 601 5.087323 AGTTCAACCATGGAGTCTTCTAGA 58.913 41.667 21.47 0.00 0.00 2.43
497 602 5.413309 AGTTCAACCATGGAGTCTTCTAG 57.587 43.478 21.47 0.00 0.00 2.43
498 603 5.825593 AAGTTCAACCATGGAGTCTTCTA 57.174 39.130 21.47 0.00 0.00 2.10
499 604 4.713792 AAGTTCAACCATGGAGTCTTCT 57.286 40.909 21.47 6.52 0.00 2.85
500 605 5.106515 GCTTAAGTTCAACCATGGAGTCTTC 60.107 44.000 21.47 4.19 0.00 2.87
501 606 4.762251 GCTTAAGTTCAACCATGGAGTCTT 59.238 41.667 21.47 18.42 0.00 3.01
502 607 4.202461 TGCTTAAGTTCAACCATGGAGTCT 60.202 41.667 21.47 10.37 0.00 3.24
503 608 4.072131 TGCTTAAGTTCAACCATGGAGTC 58.928 43.478 21.47 8.42 0.00 3.36
504 609 4.098914 TGCTTAAGTTCAACCATGGAGT 57.901 40.909 21.47 2.21 0.00 3.85
505 610 6.757897 TTATGCTTAAGTTCAACCATGGAG 57.242 37.500 21.47 10.83 0.00 3.86
506 611 6.405731 GCATTATGCTTAAGTTCAACCATGGA 60.406 38.462 21.47 0.00 40.96 3.41
507 612 5.750067 GCATTATGCTTAAGTTCAACCATGG 59.250 40.000 11.19 11.19 40.96 3.66
508 613 6.254157 GTGCATTATGCTTAAGTTCAACCATG 59.746 38.462 18.44 0.00 45.31 3.66
509 614 6.332630 GTGCATTATGCTTAAGTTCAACCAT 58.667 36.000 18.44 0.63 45.31 3.55
510 615 5.618863 CGTGCATTATGCTTAAGTTCAACCA 60.619 40.000 18.44 0.00 45.31 3.67
511 616 4.793216 CGTGCATTATGCTTAAGTTCAACC 59.207 41.667 18.44 0.00 45.31 3.77
512 617 5.627172 TCGTGCATTATGCTTAAGTTCAAC 58.373 37.500 18.44 3.82 45.31 3.18
513 618 5.871465 TCGTGCATTATGCTTAAGTTCAA 57.129 34.783 18.44 0.00 45.31 2.69
514 619 5.391523 GGTTCGTGCATTATGCTTAAGTTCA 60.392 40.000 18.44 0.00 45.31 3.18
515 620 5.028375 GGTTCGTGCATTATGCTTAAGTTC 58.972 41.667 18.44 3.40 45.31 3.01
516 621 4.700213 AGGTTCGTGCATTATGCTTAAGTT 59.300 37.500 18.44 0.00 45.31 2.66
517 622 4.261801 AGGTTCGTGCATTATGCTTAAGT 58.738 39.130 18.44 0.00 45.31 2.24
518 623 4.882671 AGGTTCGTGCATTATGCTTAAG 57.117 40.909 18.44 0.00 45.31 1.85
519 624 6.745159 TTTAGGTTCGTGCATTATGCTTAA 57.255 33.333 18.44 6.99 45.31 1.85
520 625 6.745159 TTTTAGGTTCGTGCATTATGCTTA 57.255 33.333 18.44 0.87 45.31 3.09
521 626 5.637006 TTTTAGGTTCGTGCATTATGCTT 57.363 34.783 18.44 0.00 45.31 3.91
522 627 5.637006 TTTTTAGGTTCGTGCATTATGCT 57.363 34.783 18.44 0.00 45.31 3.79
541 646 5.405935 ACAAAGGAGAAGTGCTTGTTTTT 57.594 34.783 0.00 0.00 33.98 1.94
542 647 5.185828 AGAACAAAGGAGAAGTGCTTGTTTT 59.814 36.000 0.00 0.00 33.98 2.43
543 648 4.706962 AGAACAAAGGAGAAGTGCTTGTTT 59.293 37.500 0.00 0.00 33.98 2.83
544 649 4.273318 AGAACAAAGGAGAAGTGCTTGTT 58.727 39.130 0.00 0.00 33.98 2.83
545 650 3.879892 GAGAACAAAGGAGAAGTGCTTGT 59.120 43.478 0.00 0.00 33.98 3.16
546 651 4.133078 AGAGAACAAAGGAGAAGTGCTTG 58.867 43.478 0.00 0.00 33.98 4.01
547 652 4.429854 AGAGAACAAAGGAGAAGTGCTT 57.570 40.909 0.00 0.00 35.50 3.91
548 653 4.835615 TCTAGAGAACAAAGGAGAAGTGCT 59.164 41.667 0.00 0.00 0.00 4.40
549 654 5.140747 TCTAGAGAACAAAGGAGAAGTGC 57.859 43.478 0.00 0.00 0.00 4.40
550 655 7.610865 AGATTCTAGAGAACAAAGGAGAAGTG 58.389 38.462 0.00 0.00 36.80 3.16
551 656 7.790782 AGATTCTAGAGAACAAAGGAGAAGT 57.209 36.000 0.00 0.00 36.80 3.01
552 657 7.763985 GGAAGATTCTAGAGAACAAAGGAGAAG 59.236 40.741 0.00 0.00 36.80 2.85
553 658 7.235606 TGGAAGATTCTAGAGAACAAAGGAGAA 59.764 37.037 0.00 0.00 36.80 2.87
554 659 6.726299 TGGAAGATTCTAGAGAACAAAGGAGA 59.274 38.462 0.00 0.00 36.80 3.71
555 660 6.940739 TGGAAGATTCTAGAGAACAAAGGAG 58.059 40.000 0.00 0.00 36.80 3.69
556 661 6.935240 TGGAAGATTCTAGAGAACAAAGGA 57.065 37.500 0.00 0.00 36.80 3.36
623 728 9.534565 TGCATTGTAAAGCATAAAGTAAAAACA 57.465 25.926 0.00 0.00 35.51 2.83
624 729 9.791838 GTGCATTGTAAAGCATAAAGTAAAAAC 57.208 29.630 0.00 0.00 43.44 2.43
625 730 9.534565 TGTGCATTGTAAAGCATAAAGTAAAAA 57.465 25.926 0.00 0.00 43.44 1.94
626 731 9.534565 TTGTGCATTGTAAAGCATAAAGTAAAA 57.465 25.926 0.00 0.00 43.44 1.52
627 732 9.703892 ATTGTGCATTGTAAAGCATAAAGTAAA 57.296 25.926 7.80 0.00 43.36 2.01
628 733 9.703892 AATTGTGCATTGTAAAGCATAAAGTAA 57.296 25.926 7.80 0.00 43.36 2.24
629 734 9.352784 GAATTGTGCATTGTAAAGCATAAAGTA 57.647 29.630 7.80 0.00 43.36 2.24
630 735 7.331687 GGAATTGTGCATTGTAAAGCATAAAGT 59.668 33.333 7.80 1.94 43.36 2.66
631 736 7.331440 TGGAATTGTGCATTGTAAAGCATAAAG 59.669 33.333 7.80 0.00 43.36 1.85
632 737 7.157347 TGGAATTGTGCATTGTAAAGCATAAA 58.843 30.769 7.80 2.90 43.36 1.40
633 738 6.695429 TGGAATTGTGCATTGTAAAGCATAA 58.305 32.000 6.49 6.49 44.05 1.90
634 739 6.278172 TGGAATTGTGCATTGTAAAGCATA 57.722 33.333 0.00 0.00 43.44 3.14
635 740 5.149973 TGGAATTGTGCATTGTAAAGCAT 57.850 34.783 0.00 0.00 43.44 3.79
636 741 4.597404 TGGAATTGTGCATTGTAAAGCA 57.403 36.364 0.00 0.00 38.65 3.91
637 742 5.170021 TCATGGAATTGTGCATTGTAAAGC 58.830 37.500 0.00 0.00 32.69 3.51
638 743 7.762615 AGATTCATGGAATTGTGCATTGTAAAG 59.237 33.333 0.00 0.00 32.69 1.85
639 744 7.613585 AGATTCATGGAATTGTGCATTGTAAA 58.386 30.769 0.00 0.00 32.69 2.01
640 745 7.172868 AGATTCATGGAATTGTGCATTGTAA 57.827 32.000 0.00 0.00 32.69 2.41
641 746 6.778834 AGATTCATGGAATTGTGCATTGTA 57.221 33.333 0.00 0.00 32.69 2.41
642 747 5.670792 AGATTCATGGAATTGTGCATTGT 57.329 34.783 0.00 0.00 32.69 2.71
643 748 8.481974 TTTAAGATTCATGGAATTGTGCATTG 57.518 30.769 0.00 0.00 32.69 2.82
644 749 9.675464 ATTTTAAGATTCATGGAATTGTGCATT 57.325 25.926 0.00 0.00 32.69 3.56
646 751 9.806203 CTATTTTAAGATTCATGGAATTGTGCA 57.194 29.630 0.00 0.00 31.89 4.57
687 792 9.471702 AGTTCATCTCATCCAAAATCAATTAGT 57.528 29.630 0.00 0.00 0.00 2.24
718 823 9.929722 TGCATAATGTAGATGTTCGTTTAATTC 57.070 29.630 0.00 0.00 0.00 2.17
741 846 8.506437 GCATGTAAGCTTTAAGTCATATATGCA 58.494 33.333 3.20 0.00 37.62 3.96
742 847 8.725148 AGCATGTAAGCTTTAAGTCATATATGC 58.275 33.333 3.20 9.59 43.70 3.14
748 853 9.265901 CACTATAGCATGTAAGCTTTAAGTCAT 57.734 33.333 3.20 0.00 43.70 3.06
749 854 8.258007 ACACTATAGCATGTAAGCTTTAAGTCA 58.742 33.333 3.20 0.00 43.70 3.41
750 855 8.543774 CACACTATAGCATGTAAGCTTTAAGTC 58.456 37.037 3.20 0.00 43.70 3.01
751 856 7.495934 CCACACTATAGCATGTAAGCTTTAAGT 59.504 37.037 3.20 0.00 43.70 2.24
752 857 7.495934 ACCACACTATAGCATGTAAGCTTTAAG 59.504 37.037 3.20 0.00 43.70 1.85
753 858 7.335627 ACCACACTATAGCATGTAAGCTTTAA 58.664 34.615 3.20 0.00 43.70 1.52
754 859 6.884832 ACCACACTATAGCATGTAAGCTTTA 58.115 36.000 3.20 0.00 43.70 1.85
755 860 5.745227 ACCACACTATAGCATGTAAGCTTT 58.255 37.500 3.20 0.00 43.70 3.51
756 861 5.359194 ACCACACTATAGCATGTAAGCTT 57.641 39.130 3.48 3.48 43.70 3.74
758 863 7.730364 AAATACCACACTATAGCATGTAAGC 57.270 36.000 0.00 0.00 0.00 3.09
792 897 1.801771 CGCACGAGATTTGGTAACCAA 59.198 47.619 0.00 0.00 42.29 3.67
793 898 1.270412 ACGCACGAGATTTGGTAACCA 60.270 47.619 0.00 0.00 0.00 3.67
794 899 1.127951 CACGCACGAGATTTGGTAACC 59.872 52.381 0.00 0.00 0.00 2.85
795 900 1.463528 GCACGCACGAGATTTGGTAAC 60.464 52.381 0.00 0.00 0.00 2.50
796 901 0.793861 GCACGCACGAGATTTGGTAA 59.206 50.000 0.00 0.00 0.00 2.85
797 902 1.348538 CGCACGCACGAGATTTGGTA 61.349 55.000 0.00 0.00 34.06 3.25
798 903 2.667318 CGCACGCACGAGATTTGGT 61.667 57.895 0.00 0.00 34.06 3.67
799 904 1.695893 ATCGCACGCACGAGATTTGG 61.696 55.000 6.52 0.00 46.69 3.28
800 905 0.314578 GATCGCACGCACGAGATTTG 60.315 55.000 6.52 0.00 46.69 2.32
801 906 1.421410 GGATCGCACGCACGAGATTT 61.421 55.000 6.52 0.00 46.69 2.17
802 907 1.878522 GGATCGCACGCACGAGATT 60.879 57.895 6.52 0.00 46.69 2.40
803 908 2.278857 GGATCGCACGCACGAGAT 60.279 61.111 6.52 0.00 46.69 2.75
804 909 3.743636 TGGATCGCACGCACGAGA 61.744 61.111 6.52 0.00 46.69 4.04
805 910 3.545481 GTGGATCGCACGCACGAG 61.545 66.667 6.52 0.00 46.69 4.18
812 917 0.388134 AGTGTACACGTGGATCGCAC 60.388 55.000 21.57 15.74 44.19 5.34
813 918 0.109458 GAGTGTACACGTGGATCGCA 60.109 55.000 21.57 2.49 44.19 5.10
814 919 0.801067 GGAGTGTACACGTGGATCGC 60.801 60.000 21.57 15.10 44.19 4.58
815 920 0.809385 AGGAGTGTACACGTGGATCG 59.191 55.000 21.57 0.00 46.00 3.69
816 921 3.693085 TCTAAGGAGTGTACACGTGGATC 59.307 47.826 21.57 11.48 36.20 3.36
817 922 3.693807 TCTAAGGAGTGTACACGTGGAT 58.306 45.455 21.57 9.48 36.20 3.41
818 923 3.144657 TCTAAGGAGTGTACACGTGGA 57.855 47.619 21.57 9.00 36.20 4.02
819 924 3.504906 TCTTCTAAGGAGTGTACACGTGG 59.495 47.826 21.57 9.21 36.20 4.94
820 925 4.454847 TCTCTTCTAAGGAGTGTACACGTG 59.545 45.833 19.93 15.48 36.20 4.49
821 926 4.649692 TCTCTTCTAAGGAGTGTACACGT 58.350 43.478 19.93 8.86 36.20 4.49
822 927 4.095185 CCTCTCTTCTAAGGAGTGTACACG 59.905 50.000 19.93 5.23 34.35 4.49
823 928 4.399934 CCCTCTCTTCTAAGGAGTGTACAC 59.600 50.000 18.56 18.56 34.35 2.90
824 929 4.291513 TCCCTCTCTTCTAAGGAGTGTACA 59.708 45.833 0.00 0.00 34.35 2.90
825 930 4.857679 TCCCTCTCTTCTAAGGAGTGTAC 58.142 47.826 0.00 0.00 34.35 2.90
826 931 4.789159 TCTCCCTCTCTTCTAAGGAGTGTA 59.211 45.833 4.41 0.00 43.80 2.90
827 932 3.594232 TCTCCCTCTCTTCTAAGGAGTGT 59.406 47.826 4.41 0.00 43.80 3.55
828 933 4.243793 TCTCCCTCTCTTCTAAGGAGTG 57.756 50.000 4.41 0.00 43.80 3.51
834 939 6.996180 TTGTTTCTTCTCCCTCTCTTCTAA 57.004 37.500 0.00 0.00 0.00 2.10
840 945 7.279090 GCTAGTATTTTGTTTCTTCTCCCTCTC 59.721 40.741 0.00 0.00 0.00 3.20
916 1021 4.785453 GTGCAGGGGAGGGCTTCG 62.785 72.222 0.00 0.00 0.00 3.79
1170 1279 0.178973 GCACCACCTTGTTACCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
1318 1428 1.470098 CCAGAGCGCAATAAAGCAACT 59.530 47.619 11.47 0.00 35.48 3.16
1399 1509 4.705023 ACATTGTGCCTAAAACTATGACCC 59.295 41.667 5.27 0.00 35.29 4.46
1783 1893 8.258007 TGACTAATTTAGGAGTGTCACCAATAG 58.742 37.037 8.26 0.00 30.78 1.73
1836 1946 3.943671 TCAATGACCCCATATTCGGTT 57.056 42.857 0.00 0.00 30.56 4.44
1916 2031 6.627087 AGTTCAGGATTCAGATGGACTTTA 57.373 37.500 0.00 0.00 27.92 1.85
2070 2185 5.532779 AGGGTCTTCACAGAAATTGTTCTTC 59.467 40.000 0.00 0.00 41.55 2.87
2082 2197 2.227388 GTGCATTTCAGGGTCTTCACAG 59.773 50.000 0.00 0.00 0.00 3.66
2109 2224 4.914177 AACCTACCTCGGTTTTGGATAA 57.086 40.909 0.00 0.00 44.65 1.75
2441 2562 5.867716 ACATTGTTAGAAGTGCCGTAACTAG 59.132 40.000 0.00 0.00 0.00 2.57
2565 2686 9.696917 AATCCAAAATACATGAAACTGAACTTC 57.303 29.630 0.00 0.00 0.00 3.01
2715 4614 5.686159 AATGAGCTTAGCACAATAGATGC 57.314 39.130 8.57 0.00 43.74 3.91
2812 4735 2.935201 GCTGTGTTATCTCTCTGGCAAG 59.065 50.000 0.00 0.00 0.00 4.01
2844 4767 8.301720 AGACACGTATAAGTTTTATCACTGTGA 58.698 33.333 13.60 13.60 0.00 3.58
2949 4872 1.540367 ATCCGGGTCCTCCAAACCA 60.540 57.895 0.00 0.00 38.62 3.67
3071 4994 6.207025 GCTGCTGCTTAGGTTCTACTAGTATA 59.793 42.308 8.53 0.00 36.03 1.47
3072 4995 5.010213 GCTGCTGCTTAGGTTCTACTAGTAT 59.990 44.000 8.53 0.00 36.03 2.12
3073 4996 4.338682 GCTGCTGCTTAGGTTCTACTAGTA 59.661 45.833 8.53 1.89 36.03 1.82
3075 4998 3.131223 TGCTGCTGCTTAGGTTCTACTAG 59.869 47.826 17.00 0.00 40.48 2.57
3078 5001 2.275318 CTGCTGCTGCTTAGGTTCTAC 58.725 52.381 17.00 0.00 40.48 2.59
3171 5097 3.118482 AGCACAGCAGATACAAGCTACAT 60.118 43.478 0.00 0.00 39.50 2.29
3194 5120 5.789521 TCAATTCATCTACTGAAACACGGA 58.210 37.500 0.00 0.00 46.62 4.69
3247 5173 8.797438 TGACATTAATACAACAATAACAAGGCA 58.203 29.630 0.00 0.00 0.00 4.75
3452 5378 9.264719 AGGAATAAAATCTGTTGCTTTCAAAAG 57.735 29.630 0.00 0.00 38.60 2.27
3618 5556 1.518903 GCTGGACTTTGTGAGTGCCC 61.519 60.000 0.00 0.00 45.32 5.36
3620 5558 1.518903 GGGCTGGACTTTGTGAGTGC 61.519 60.000 0.00 0.00 46.03 4.40
3662 5600 0.242017 GTGGGCTCAGATGTTGCAAC 59.758 55.000 22.83 22.83 0.00 4.17
3745 5683 6.021672 TCTAGCATGGAGGATCAGATGTAAT 58.978 40.000 0.00 0.00 36.25 1.89
3775 5713 1.443407 CTCAGCGATCCGGAATGGT 59.557 57.895 9.01 6.72 39.52 3.55
3897 5835 2.763933 CAGAGATGACAATGATCCGGG 58.236 52.381 0.00 0.00 0.00 5.73
3905 5843 4.252073 GTTGACTCAGCAGAGATGACAAT 58.748 43.478 13.73 0.00 44.98 2.71
3906 5844 3.657634 GTTGACTCAGCAGAGATGACAA 58.342 45.455 13.73 10.04 44.98 3.18
3937 5876 2.684881 GGCAACATGATTCGTTCCTCAT 59.315 45.455 0.00 0.00 32.37 2.90
4032 5971 6.159299 TGTGGTCAAAATCAATGTTGATGT 57.841 33.333 8.86 0.92 46.60 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.