Multiple sequence alignment - TraesCS5D01G179900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G179900 chr5D 100.000 4683 0 0 1 4683 279316839 279312157 0.000000e+00 8648
1 TraesCS5D01G179900 chr5D 74.710 518 72 29 398 859 218263291 218263805 4.820000e-40 176
2 TraesCS5D01G179900 chr5B 97.413 2087 48 6 1613 3698 317312672 317310591 0.000000e+00 3550
3 TraesCS5D01G179900 chr5B 96.144 804 27 3 3881 4683 317310048 317309248 0.000000e+00 1310
4 TraesCS5D01G179900 chr5B 96.029 554 14 2 971 1523 317313220 317312674 0.000000e+00 894
5 TraesCS5D01G179900 chr5B 85.222 609 47 7 398 966 317339693 317339088 1.880000e-163 586
6 TraesCS5D01G179900 chr5B 97.849 186 4 0 3689 3874 317310512 317310327 5.850000e-84 322
7 TraesCS5D01G179900 chr5B 76.048 501 86 24 398 869 152625930 152625435 3.640000e-56 230
8 TraesCS5D01G179900 chr5B 76.350 389 52 23 528 884 643646457 643646837 6.230000e-39 172
9 TraesCS5D01G179900 chr5B 76.557 273 46 13 625 883 74507269 74507537 2.940000e-27 134
10 TraesCS5D01G179900 chr5A 93.286 2413 107 26 1613 3992 368546244 368548634 0.000000e+00 3507
11 TraesCS5D01G179900 chr5A 95.941 542 10 5 991 1531 368545716 368546246 0.000000e+00 869
12 TraesCS5D01G179900 chr5A 91.408 547 29 5 4136 4682 368548637 368549165 0.000000e+00 734
13 TraesCS5D01G179900 chr5A 81.985 655 60 27 398 994 368544269 368544923 1.950000e-138 503
14 TraesCS5D01G179900 chr7D 95.616 365 15 1 1 365 379745061 379745424 6.750000e-163 584
15 TraesCS5D01G179900 chr7D 94.837 368 14 3 1 365 599982196 599981831 1.890000e-158 569
16 TraesCS5D01G179900 chr7D 77.403 385 56 21 528 883 311574817 311574435 2.860000e-47 200
17 TraesCS5D01G179900 chr7D 77.714 350 54 20 528 859 448685570 448685913 4.780000e-45 193
18 TraesCS5D01G179900 chr7D 76.501 383 60 22 528 882 423253564 423253944 1.040000e-41 182
19 TraesCS5D01G179900 chr7D 75.066 377 67 21 528 882 207932659 207932288 2.920000e-32 150
20 TraesCS5D01G179900 chr7D 93.069 101 7 0 1514 1614 455216168 455216268 1.050000e-31 148
21 TraesCS5D01G179900 chr7D 79.245 212 36 6 677 884 420078225 420078432 1.760000e-29 141
22 TraesCS5D01G179900 chr7D 74.859 354 60 20 536 863 257626769 257627119 2.940000e-27 134
23 TraesCS5D01G179900 chr4D 95.342 365 16 1 1 365 399522970 399522607 3.140000e-161 579
24 TraesCS5D01G179900 chr4D 95.041 363 17 1 1 363 399507916 399507555 1.890000e-158 569
25 TraesCS5D01G179900 chr4D 81.013 237 19 14 528 741 60885696 60885929 1.040000e-36 165
26 TraesCS5D01G179900 chr6D 95.082 366 13 3 1 363 80050142 80049779 5.260000e-159 571
27 TraesCS5D01G179900 chr6D 94.837 368 14 3 1 365 80057204 80056839 1.890000e-158 569
28 TraesCS5D01G179900 chr6D 75.472 530 65 38 398 869 242224105 242224627 1.030000e-46 198
29 TraesCS5D01G179900 chr2D 94.809 366 18 1 1 366 86477892 86478256 1.890000e-158 569
30 TraesCS5D01G179900 chr2D 94.837 368 14 3 1 365 576892734 576892369 1.890000e-158 569
31 TraesCS5D01G179900 chr2D 77.222 540 66 31 398 884 316118135 316118670 3.590000e-66 263
32 TraesCS5D01G179900 chr1D 95.055 364 15 2 1 364 210215753 210215393 1.890000e-158 569
33 TraesCS5D01G179900 chr1D 78.273 359 62 14 536 883 131669211 131668858 2.840000e-52 217
34 TraesCS5D01G179900 chr4A 76.667 510 62 26 398 854 221958281 221958786 3.640000e-56 230
35 TraesCS5D01G179900 chr4A 75.137 547 77 27 398 889 147953811 147953269 7.950000e-48 202
36 TraesCS5D01G179900 chr1B 77.072 362 59 19 528 869 175691501 175691858 2.220000e-43 187
37 TraesCS5D01G179900 chr1B 76.531 294 35 23 528 792 207264140 207264428 3.800000e-26 130
38 TraesCS5D01G179900 chr3B 76.350 389 58 24 528 885 529605517 529605132 1.340000e-40 178
39 TraesCS5D01G179900 chr4B 90.625 128 12 0 398 525 436365521 436365394 2.240000e-38 171
40 TraesCS5D01G179900 chr4B 75.843 356 54 24 555 882 91630582 91630231 8.120000e-33 152
41 TraesCS5D01G179900 chr7A 90.551 127 12 0 398 524 355646765 355646639 8.060000e-38 169
42 TraesCS5D01G179900 chr7A 94.175 103 4 2 1516 1617 126943029 126943130 6.270000e-34 156
43 TraesCS5D01G179900 chr3D 78.358 268 42 12 539 792 420799354 420799089 4.850000e-35 159
44 TraesCS5D01G179900 chr3D 74.263 373 55 27 531 869 299778548 299778183 8.230000e-23 119
45 TraesCS5D01G179900 chr2B 95.876 97 3 1 1522 1617 127159537 127159441 6.270000e-34 156
46 TraesCS5D01G179900 chr2B 91.346 104 7 2 1513 1616 77856049 77856150 1.760000e-29 141
47 TraesCS5D01G179900 chr6B 96.739 92 3 0 1529 1620 280519706 280519797 2.260000e-33 154
48 TraesCS5D01G179900 chr6B 94.737 95 4 1 1526 1619 132894264 132894358 3.780000e-31 147
49 TraesCS5D01G179900 chr2A 94.737 95 5 0 1525 1619 691214487 691214581 1.050000e-31 148
50 TraesCS5D01G179900 chr2A 93.069 101 6 1 1526 1626 236839343 236839244 3.780000e-31 147
51 TraesCS5D01G179900 chr7B 88.235 119 8 4 1497 1614 689651724 689651837 2.270000e-28 137
52 TraesCS5D01G179900 chr6A 73.077 520 78 33 398 859 396305498 396306013 1.370000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G179900 chr5D 279312157 279316839 4682 True 8648.00 8648 100.00000 1 4683 1 chr5D.!!$R1 4682
1 TraesCS5D01G179900 chr5B 317309248 317313220 3972 True 1519.00 3550 96.85875 971 4683 4 chr5B.!!$R3 3712
2 TraesCS5D01G179900 chr5B 317339088 317339693 605 True 586.00 586 85.22200 398 966 1 chr5B.!!$R2 568
3 TraesCS5D01G179900 chr5A 368544269 368549165 4896 False 1403.25 3507 90.65500 398 4682 4 chr5A.!!$F1 4284
4 TraesCS5D01G179900 chr2D 316118135 316118670 535 False 263.00 263 77.22200 398 884 1 chr2D.!!$F2 486
5 TraesCS5D01G179900 chr4A 221958281 221958786 505 False 230.00 230 76.66700 398 854 1 chr4A.!!$F1 456
6 TraesCS5D01G179900 chr4A 147953269 147953811 542 True 202.00 202 75.13700 398 889 1 chr4A.!!$R1 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 616 0.034477 ACTGAAAACTATGGCCCCGG 60.034 55.0 0.00 0.0 0.00 5.73 F
948 1016 0.318441 TCTTCCAGAAGCGACACCTG 59.682 55.0 2.38 0.0 38.28 4.00 F
1857 2722 0.328258 AAGATGGACCGGACCTTTGG 59.672 55.0 23.51 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 3005 0.321564 TGGCTATCGCAAACAGCAGT 60.322 50.0 0.0 0.0 46.13 4.40 R
2508 3380 0.388520 GCGCCATGTCTTTGGTTTCC 60.389 55.0 0.0 0.0 39.11 3.13 R
3686 4565 1.119684 ACAGGTAGCACACACACAGA 58.880 50.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.707584 TCCTCCTCCATAGCGCTT 57.292 55.556 18.68 0.00 0.00 4.68
18 19 2.127839 TCCTCCTCCATAGCGCTTG 58.872 57.895 18.68 13.87 0.00 4.01
19 20 1.070445 CCTCCTCCATAGCGCTTGG 59.930 63.158 18.68 22.39 35.45 3.61
20 21 1.596477 CTCCTCCATAGCGCTTGGC 60.596 63.158 24.94 0.00 44.05 4.52
38 39 2.748268 CGAAGCTCTGCTGGAGAAC 58.252 57.895 10.60 0.00 44.45 3.01
39 40 0.739112 CGAAGCTCTGCTGGAGAACC 60.739 60.000 10.60 0.00 44.45 3.62
40 41 0.322975 GAAGCTCTGCTGGAGAACCA 59.677 55.000 10.60 0.00 44.45 3.67
41 42 0.036022 AAGCTCTGCTGGAGAACCAC 59.964 55.000 10.60 0.00 44.45 4.16
42 43 1.739562 GCTCTGCTGGAGAACCACG 60.740 63.158 10.60 0.00 44.45 4.94
43 44 1.967535 CTCTGCTGGAGAACCACGA 59.032 57.895 0.00 0.00 44.45 4.35
44 45 0.108898 CTCTGCTGGAGAACCACGAG 60.109 60.000 0.00 0.00 44.45 4.18
45 46 1.739562 CTGCTGGAGAACCACGAGC 60.740 63.158 0.00 0.00 41.77 5.03
46 47 2.164865 CTGCTGGAGAACCACGAGCT 62.165 60.000 0.00 0.00 41.77 4.09
47 48 1.446966 GCTGGAGAACCACGAGCTC 60.447 63.158 2.73 2.73 41.77 4.09
48 49 1.216710 CTGGAGAACCACGAGCTCC 59.783 63.158 8.47 0.00 46.60 4.70
49 50 3.377656 GGAGAACCACGAGCTCCA 58.622 61.111 8.47 0.00 45.89 3.86
50 51 1.079750 GGAGAACCACGAGCTCCAC 60.080 63.158 8.47 0.00 45.89 4.02
51 52 1.079750 GAGAACCACGAGCTCCACC 60.080 63.158 8.47 0.00 0.00 4.61
52 53 1.816863 GAGAACCACGAGCTCCACCA 61.817 60.000 8.47 0.00 0.00 4.17
53 54 1.668151 GAACCACGAGCTCCACCAC 60.668 63.158 8.47 0.00 0.00 4.16
54 55 3.178540 AACCACGAGCTCCACCACC 62.179 63.158 8.47 0.00 0.00 4.61
55 56 3.625897 CCACGAGCTCCACCACCA 61.626 66.667 8.47 0.00 0.00 4.17
56 57 2.357517 CACGAGCTCCACCACCAC 60.358 66.667 8.47 0.00 0.00 4.16
57 58 3.991051 ACGAGCTCCACCACCACG 61.991 66.667 8.47 0.00 0.00 4.94
58 59 3.991051 CGAGCTCCACCACCACGT 61.991 66.667 8.47 0.00 0.00 4.49
59 60 2.048127 GAGCTCCACCACCACGTC 60.048 66.667 0.87 0.00 0.00 4.34
60 61 3.916392 GAGCTCCACCACCACGTCG 62.916 68.421 0.87 0.00 0.00 5.12
61 62 4.295119 GCTCCACCACCACGTCGT 62.295 66.667 0.00 0.00 0.00 4.34
62 63 2.049433 CTCCACCACCACGTCGTC 60.049 66.667 0.00 0.00 0.00 4.20
63 64 3.891586 CTCCACCACCACGTCGTCG 62.892 68.421 0.00 0.00 43.34 5.12
77 78 3.112709 GTCGTGCTGCCGGAGTTC 61.113 66.667 5.05 0.00 0.00 3.01
78 79 3.303135 TCGTGCTGCCGGAGTTCT 61.303 61.111 5.05 0.00 0.00 3.01
79 80 2.811317 CGTGCTGCCGGAGTTCTC 60.811 66.667 5.05 0.00 0.00 2.87
80 81 2.435059 GTGCTGCCGGAGTTCTCC 60.435 66.667 5.05 8.66 0.00 3.71
81 82 3.706373 TGCTGCCGGAGTTCTCCC 61.706 66.667 5.05 1.46 0.00 4.30
82 83 3.394836 GCTGCCGGAGTTCTCCCT 61.395 66.667 5.05 0.00 0.00 4.20
83 84 2.896443 CTGCCGGAGTTCTCCCTC 59.104 66.667 5.05 5.84 0.00 4.30
84 85 1.984570 CTGCCGGAGTTCTCCCTCA 60.985 63.158 5.05 9.53 32.91 3.86
85 86 1.535444 TGCCGGAGTTCTCCCTCAA 60.535 57.895 5.05 0.00 32.91 3.02
86 87 1.079057 GCCGGAGTTCTCCCTCAAC 60.079 63.158 5.05 0.00 32.91 3.18
87 88 1.545706 GCCGGAGTTCTCCCTCAACT 61.546 60.000 5.05 0.00 36.77 3.16
88 89 0.977395 CCGGAGTTCTCCCTCAACTT 59.023 55.000 12.54 0.00 34.10 2.66
89 90 1.066787 CCGGAGTTCTCCCTCAACTTC 60.067 57.143 12.54 0.00 34.10 3.01
90 91 1.896465 CGGAGTTCTCCCTCAACTTCT 59.104 52.381 12.54 0.00 34.10 2.85
91 92 2.094442 CGGAGTTCTCCCTCAACTTCTC 60.094 54.545 12.54 0.00 34.10 2.87
92 93 2.235155 GGAGTTCTCCCTCAACTTCTCC 59.765 54.545 7.57 0.00 34.10 3.71
93 94 3.169908 GAGTTCTCCCTCAACTTCTCCT 58.830 50.000 0.00 0.00 34.10 3.69
94 95 3.169908 AGTTCTCCCTCAACTTCTCCTC 58.830 50.000 0.00 0.00 29.29 3.71
95 96 3.169908 GTTCTCCCTCAACTTCTCCTCT 58.830 50.000 0.00 0.00 0.00 3.69
96 97 3.094484 TCTCCCTCAACTTCTCCTCTC 57.906 52.381 0.00 0.00 0.00 3.20
97 98 2.107366 CTCCCTCAACTTCTCCTCTCC 58.893 57.143 0.00 0.00 0.00 3.71
98 99 1.199615 CCCTCAACTTCTCCTCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
99 100 1.199615 CCTCAACTTCTCCTCTCCCC 58.800 60.000 0.00 0.00 0.00 4.81
100 101 1.273552 CCTCAACTTCTCCTCTCCCCT 60.274 57.143 0.00 0.00 0.00 4.79
101 102 2.545810 CTCAACTTCTCCTCTCCCCTT 58.454 52.381 0.00 0.00 0.00 3.95
102 103 2.235898 CTCAACTTCTCCTCTCCCCTTG 59.764 54.545 0.00 0.00 0.00 3.61
103 104 0.988063 AACTTCTCCTCTCCCCTTGC 59.012 55.000 0.00 0.00 0.00 4.01
104 105 0.118144 ACTTCTCCTCTCCCCTTGCT 59.882 55.000 0.00 0.00 0.00 3.91
105 106 0.540923 CTTCTCCTCTCCCCTTGCTG 59.459 60.000 0.00 0.00 0.00 4.41
106 107 0.911525 TTCTCCTCTCCCCTTGCTGG 60.912 60.000 0.00 0.00 0.00 4.85
107 108 1.306482 CTCCTCTCCCCTTGCTGGA 60.306 63.158 0.00 0.00 38.35 3.86
108 109 0.693767 CTCCTCTCCCCTTGCTGGAT 60.694 60.000 0.00 0.00 38.35 3.41
109 110 0.692419 TCCTCTCCCCTTGCTGGATC 60.692 60.000 0.00 0.00 38.35 3.36
110 111 0.984961 CCTCTCCCCTTGCTGGATCA 60.985 60.000 0.00 0.00 38.35 2.92
111 112 0.914644 CTCTCCCCTTGCTGGATCAA 59.085 55.000 0.00 0.00 38.35 2.57
112 113 0.914644 TCTCCCCTTGCTGGATCAAG 59.085 55.000 0.00 0.00 42.23 3.02
113 114 0.914644 CTCCCCTTGCTGGATCAAGA 59.085 55.000 0.00 0.00 44.61 3.02
114 115 1.283029 CTCCCCTTGCTGGATCAAGAA 59.717 52.381 0.00 0.00 44.61 2.52
115 116 1.283029 TCCCCTTGCTGGATCAAGAAG 59.717 52.381 0.00 2.15 44.61 2.85
116 117 1.684248 CCCCTTGCTGGATCAAGAAGG 60.684 57.143 16.02 16.02 44.61 3.46
117 118 1.283029 CCCTTGCTGGATCAAGAAGGA 59.717 52.381 21.16 3.00 44.61 3.36
118 119 2.641305 CCTTGCTGGATCAAGAAGGAG 58.359 52.381 17.24 0.00 44.61 3.69
119 120 2.641305 CTTGCTGGATCAAGAAGGAGG 58.359 52.381 0.00 0.00 44.61 4.30
120 121 1.956869 TGCTGGATCAAGAAGGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
121 122 1.836166 TGCTGGATCAAGAAGGAGGAG 59.164 52.381 0.00 0.00 0.00 3.69
122 123 2.114616 GCTGGATCAAGAAGGAGGAGA 58.885 52.381 0.00 0.00 0.00 3.71
123 124 2.158971 GCTGGATCAAGAAGGAGGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
124 125 2.100584 CTGGATCAAGAAGGAGGAGACG 59.899 54.545 0.00 0.00 0.00 4.18
125 126 2.104170 GGATCAAGAAGGAGGAGACGT 58.896 52.381 0.00 0.00 0.00 4.34
126 127 2.100087 GGATCAAGAAGGAGGAGACGTC 59.900 54.545 7.70 7.70 0.00 4.34
127 128 1.546961 TCAAGAAGGAGGAGACGTCC 58.453 55.000 13.01 3.55 44.33 4.79
128 129 0.533032 CAAGAAGGAGGAGACGTCCC 59.467 60.000 13.01 13.26 45.26 4.46
129 130 0.615261 AAGAAGGAGGAGACGTCCCC 60.615 60.000 13.01 10.64 45.26 4.81
130 131 2.362632 AAGGAGGAGACGTCCCCG 60.363 66.667 13.01 0.00 45.26 5.73
131 132 3.959329 AAGGAGGAGACGTCCCCGG 62.959 68.421 13.01 0.00 45.26 5.73
137 138 4.371417 AGACGTCCCCGGGCTGTA 62.371 66.667 17.73 0.00 38.78 2.74
138 139 4.139234 GACGTCCCCGGGCTGTAC 62.139 72.222 17.73 9.24 38.78 2.90
141 142 4.446413 GTCCCCGGGCTGTACGTG 62.446 72.222 17.73 0.00 0.00 4.49
143 144 4.752879 CCCCGGGCTGTACGTGTG 62.753 72.222 17.73 0.00 0.00 3.82
144 145 3.998672 CCCGGGCTGTACGTGTGT 61.999 66.667 8.08 0.00 0.00 3.72
145 146 2.029964 CCGGGCTGTACGTGTGTT 59.970 61.111 0.00 0.00 0.00 3.32
146 147 2.314647 CCGGGCTGTACGTGTGTTG 61.315 63.158 0.00 0.00 0.00 3.33
147 148 1.300311 CGGGCTGTACGTGTGTTGA 60.300 57.895 0.00 0.00 0.00 3.18
148 149 0.876777 CGGGCTGTACGTGTGTTGAA 60.877 55.000 0.00 0.00 0.00 2.69
149 150 0.584876 GGGCTGTACGTGTGTTGAAC 59.415 55.000 0.00 0.00 0.00 3.18
150 151 0.231279 GGCTGTACGTGTGTTGAACG 59.769 55.000 0.00 0.00 46.32 3.95
151 152 0.382636 GCTGTACGTGTGTTGAACGC 60.383 55.000 1.20 1.20 44.80 4.84
156 157 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
157 158 2.970324 TGTGTTGAACGCGGAGGC 60.970 61.111 12.47 0.00 0.00 4.70
176 177 2.809601 CCGTCCGTTCGGCTCTTG 60.810 66.667 6.35 0.00 43.96 3.02
177 178 2.809601 CGTCCGTTCGGCTCTTGG 60.810 66.667 6.35 0.00 0.00 3.61
178 179 2.654877 GTCCGTTCGGCTCTTGGA 59.345 61.111 6.35 0.00 0.00 3.53
179 180 1.218316 GTCCGTTCGGCTCTTGGAT 59.782 57.895 6.35 0.00 0.00 3.41
180 181 0.806492 GTCCGTTCGGCTCTTGGATC 60.806 60.000 6.35 0.00 0.00 3.36
181 182 1.878522 CCGTTCGGCTCTTGGATCG 60.879 63.158 0.00 0.00 0.00 3.69
182 183 1.878522 CGTTCGGCTCTTGGATCGG 60.879 63.158 0.00 0.00 0.00 4.18
183 184 1.515954 GTTCGGCTCTTGGATCGGA 59.484 57.895 0.00 0.00 0.00 4.55
184 185 0.105039 GTTCGGCTCTTGGATCGGAT 59.895 55.000 0.00 0.00 0.00 4.18
185 186 0.389391 TTCGGCTCTTGGATCGGATC 59.611 55.000 9.54 9.54 0.00 3.36
186 187 0.468214 TCGGCTCTTGGATCGGATCT 60.468 55.000 16.96 0.00 0.00 2.75
187 188 0.390860 CGGCTCTTGGATCGGATCTT 59.609 55.000 16.96 0.00 0.00 2.40
188 189 1.604185 CGGCTCTTGGATCGGATCTTC 60.604 57.143 16.96 2.94 0.00 2.87
189 190 1.270571 GGCTCTTGGATCGGATCTTCC 60.271 57.143 16.96 3.65 0.00 3.46
201 202 3.528009 GGATCTTCCGCGATTTGAATC 57.472 47.619 8.23 2.60 0.00 2.52
209 210 4.880748 GATTTGAATCGCCGCGAG 57.119 55.556 21.61 0.24 39.91 5.03
210 211 2.006772 GATTTGAATCGCCGCGAGT 58.993 52.632 21.61 19.26 39.91 4.18
211 212 1.205657 GATTTGAATCGCCGCGAGTA 58.794 50.000 21.61 4.01 39.91 2.59
212 213 0.928229 ATTTGAATCGCCGCGAGTAC 59.072 50.000 21.61 14.26 39.91 2.73
213 214 1.407721 TTTGAATCGCCGCGAGTACG 61.408 55.000 21.61 6.02 39.91 3.67
214 215 2.023741 GAATCGCCGCGAGTACGA 59.976 61.111 21.61 12.00 39.91 3.43
215 216 2.277756 AATCGCCGCGAGTACGAC 60.278 61.111 21.61 0.00 39.91 4.34
216 217 2.643764 GAATCGCCGCGAGTACGACT 62.644 60.000 21.61 0.18 39.91 4.18
217 218 2.643764 AATCGCCGCGAGTACGACTC 62.644 60.000 21.61 0.00 39.91 3.36
218 219 4.883300 CGCCGCGAGTACGACTCC 62.883 72.222 8.23 3.02 42.12 3.85
219 220 3.807538 GCCGCGAGTACGACTCCA 61.808 66.667 8.23 0.00 42.12 3.86
220 221 3.108343 CCGCGAGTACGACTCCAT 58.892 61.111 8.23 0.00 42.12 3.41
221 222 1.009900 CCGCGAGTACGACTCCATC 60.010 63.158 8.23 0.62 42.12 3.51
222 223 1.712018 CCGCGAGTACGACTCCATCA 61.712 60.000 8.23 0.00 42.12 3.07
223 224 0.098200 CGCGAGTACGACTCCATCAA 59.902 55.000 0.00 0.00 42.12 2.57
224 225 1.546834 GCGAGTACGACTCCATCAAC 58.453 55.000 8.73 0.00 42.12 3.18
225 226 1.798079 GCGAGTACGACTCCATCAACC 60.798 57.143 8.73 0.00 42.12 3.77
226 227 1.531264 CGAGTACGACTCCATCAACCG 60.531 57.143 8.73 0.00 42.12 4.44
227 228 0.172803 AGTACGACTCCATCAACCGC 59.827 55.000 0.00 0.00 0.00 5.68
228 229 1.138036 TACGACTCCATCAACCGCG 59.862 57.895 0.00 0.00 0.00 6.46
229 230 1.588824 TACGACTCCATCAACCGCGT 61.589 55.000 4.92 0.00 0.00 6.01
230 231 1.736645 CGACTCCATCAACCGCGTT 60.737 57.895 4.92 0.00 0.00 4.84
231 232 1.683790 CGACTCCATCAACCGCGTTC 61.684 60.000 4.92 0.00 0.00 3.95
232 233 0.389948 GACTCCATCAACCGCGTTCT 60.390 55.000 4.92 0.00 0.00 3.01
233 234 0.034896 ACTCCATCAACCGCGTTCTT 59.965 50.000 4.92 0.00 0.00 2.52
234 235 0.443869 CTCCATCAACCGCGTTCTTG 59.556 55.000 4.92 3.62 0.00 3.02
235 236 0.250124 TCCATCAACCGCGTTCTTGT 60.250 50.000 4.92 0.00 0.00 3.16
236 237 1.001068 TCCATCAACCGCGTTCTTGTA 59.999 47.619 4.92 0.00 0.00 2.41
237 238 1.801771 CCATCAACCGCGTTCTTGTAA 59.198 47.619 4.92 0.00 0.00 2.41
238 239 2.412325 CCATCAACCGCGTTCTTGTAAC 60.412 50.000 4.92 0.00 0.00 2.50
239 240 0.854062 TCAACCGCGTTCTTGTAACG 59.146 50.000 4.92 5.94 45.56 3.18
245 246 3.921081 CGTTCTTGTAACGCTTCCG 57.079 52.632 0.00 0.00 36.82 4.30
246 247 0.179258 CGTTCTTGTAACGCTTCCGC 60.179 55.000 0.00 0.00 36.82 5.54
247 248 1.145803 GTTCTTGTAACGCTTCCGCT 58.854 50.000 0.00 0.00 38.22 5.52
248 249 1.529865 GTTCTTGTAACGCTTCCGCTT 59.470 47.619 0.00 0.00 38.22 4.68
249 250 2.728690 TCTTGTAACGCTTCCGCTTA 57.271 45.000 0.00 0.00 38.22 3.09
250 251 2.602878 TCTTGTAACGCTTCCGCTTAG 58.397 47.619 0.00 0.00 38.22 2.18
251 252 1.060698 CTTGTAACGCTTCCGCTTAGC 59.939 52.381 0.00 0.00 38.22 3.09
264 265 2.317530 GCTTAGCGATCTTCAAGGGT 57.682 50.000 0.00 0.00 0.00 4.34
265 266 3.454371 GCTTAGCGATCTTCAAGGGTA 57.546 47.619 0.00 0.00 0.00 3.69
266 267 3.996480 GCTTAGCGATCTTCAAGGGTAT 58.004 45.455 0.00 0.00 0.00 2.73
267 268 3.743396 GCTTAGCGATCTTCAAGGGTATG 59.257 47.826 0.00 0.00 0.00 2.39
268 269 4.501571 GCTTAGCGATCTTCAAGGGTATGA 60.502 45.833 0.00 0.00 0.00 2.15
269 270 5.601662 CTTAGCGATCTTCAAGGGTATGAA 58.398 41.667 0.00 0.00 37.70 2.57
277 278 4.574674 TTCAAGGGTATGAAGATGCACT 57.425 40.909 0.00 0.00 34.50 4.40
278 279 4.142609 TCAAGGGTATGAAGATGCACTC 57.857 45.455 0.00 0.00 25.83 3.51
279 280 3.118261 TCAAGGGTATGAAGATGCACTCC 60.118 47.826 0.00 0.00 25.83 3.85
280 281 1.771255 AGGGTATGAAGATGCACTCCC 59.229 52.381 0.00 0.00 35.54 4.30
281 282 1.771255 GGGTATGAAGATGCACTCCCT 59.229 52.381 0.00 0.00 33.77 4.20
282 283 2.224402 GGGTATGAAGATGCACTCCCTC 60.224 54.545 0.00 0.00 33.77 4.30
283 284 2.703007 GGTATGAAGATGCACTCCCTCT 59.297 50.000 0.00 0.00 0.00 3.69
284 285 3.898123 GGTATGAAGATGCACTCCCTCTA 59.102 47.826 0.00 0.00 0.00 2.43
285 286 4.530161 GGTATGAAGATGCACTCCCTCTAT 59.470 45.833 0.00 0.00 0.00 1.98
286 287 4.888326 ATGAAGATGCACTCCCTCTATC 57.112 45.455 0.00 0.00 0.00 2.08
287 288 3.921104 TGAAGATGCACTCCCTCTATCT 58.079 45.455 0.00 0.00 0.00 1.98
288 289 3.894427 TGAAGATGCACTCCCTCTATCTC 59.106 47.826 0.00 0.00 0.00 2.75
289 290 2.513753 AGATGCACTCCCTCTATCTCG 58.486 52.381 0.00 0.00 0.00 4.04
290 291 2.158534 AGATGCACTCCCTCTATCTCGT 60.159 50.000 0.00 0.00 0.00 4.18
291 292 2.145397 TGCACTCCCTCTATCTCGTT 57.855 50.000 0.00 0.00 0.00 3.85
292 293 1.751351 TGCACTCCCTCTATCTCGTTG 59.249 52.381 0.00 0.00 0.00 4.10
293 294 1.537135 GCACTCCCTCTATCTCGTTGC 60.537 57.143 0.00 0.00 0.00 4.17
294 295 2.028130 CACTCCCTCTATCTCGTTGCT 58.972 52.381 0.00 0.00 0.00 3.91
295 296 3.215151 CACTCCCTCTATCTCGTTGCTA 58.785 50.000 0.00 0.00 0.00 3.49
296 297 3.252215 CACTCCCTCTATCTCGTTGCTAG 59.748 52.174 0.00 0.00 0.00 3.42
297 298 2.227865 CTCCCTCTATCTCGTTGCTAGC 59.772 54.545 8.10 8.10 0.00 3.42
298 299 2.158593 TCCCTCTATCTCGTTGCTAGCT 60.159 50.000 17.23 0.00 0.00 3.32
299 300 2.625790 CCCTCTATCTCGTTGCTAGCTT 59.374 50.000 17.23 0.00 0.00 3.74
300 301 3.305064 CCCTCTATCTCGTTGCTAGCTTC 60.305 52.174 17.23 7.90 0.00 3.86
301 302 3.568007 CCTCTATCTCGTTGCTAGCTTCT 59.432 47.826 17.23 0.00 0.00 2.85
302 303 4.320202 CCTCTATCTCGTTGCTAGCTTCTC 60.320 50.000 17.23 2.88 0.00 2.87
303 304 2.880963 ATCTCGTTGCTAGCTTCTCC 57.119 50.000 17.23 0.00 0.00 3.71
304 305 1.840737 TCTCGTTGCTAGCTTCTCCT 58.159 50.000 17.23 0.00 0.00 3.69
305 306 3.000684 TCTCGTTGCTAGCTTCTCCTA 57.999 47.619 17.23 0.00 0.00 2.94
306 307 2.946329 TCTCGTTGCTAGCTTCTCCTAG 59.054 50.000 17.23 4.67 38.24 3.02
307 308 2.946329 CTCGTTGCTAGCTTCTCCTAGA 59.054 50.000 17.23 3.58 37.57 2.43
308 309 3.556999 TCGTTGCTAGCTTCTCCTAGAT 58.443 45.455 17.23 0.00 37.57 1.98
309 310 3.954904 TCGTTGCTAGCTTCTCCTAGATT 59.045 43.478 17.23 0.00 37.57 2.40
310 311 4.047822 CGTTGCTAGCTTCTCCTAGATTG 58.952 47.826 17.23 0.00 37.57 2.67
311 312 4.202060 CGTTGCTAGCTTCTCCTAGATTGA 60.202 45.833 17.23 0.00 37.57 2.57
312 313 5.508825 CGTTGCTAGCTTCTCCTAGATTGAT 60.509 44.000 17.23 0.00 37.57 2.57
313 314 5.720371 TGCTAGCTTCTCCTAGATTGATC 57.280 43.478 17.23 0.00 37.57 2.92
314 315 5.392995 TGCTAGCTTCTCCTAGATTGATCT 58.607 41.667 17.23 0.00 37.57 2.75
315 316 5.837979 TGCTAGCTTCTCCTAGATTGATCTT 59.162 40.000 17.23 0.00 37.57 2.40
316 317 6.158598 GCTAGCTTCTCCTAGATTGATCTTG 58.841 44.000 7.70 0.00 37.57 3.02
317 318 5.549742 AGCTTCTCCTAGATTGATCTTGG 57.450 43.478 13.24 13.24 46.71 3.61
318 319 4.968080 AGCTTCTCCTAGATTGATCTTGGT 59.032 41.667 17.17 0.00 45.88 3.67
319 320 5.055812 GCTTCTCCTAGATTGATCTTGGTG 58.944 45.833 17.17 15.36 45.88 4.17
320 321 5.163364 GCTTCTCCTAGATTGATCTTGGTGA 60.163 44.000 17.17 16.92 45.88 4.02
321 322 5.860941 TCTCCTAGATTGATCTTGGTGAC 57.139 43.478 17.17 0.00 45.88 3.67
322 323 5.272402 TCTCCTAGATTGATCTTGGTGACA 58.728 41.667 17.17 2.34 45.88 3.58
323 324 5.127845 TCTCCTAGATTGATCTTGGTGACAC 59.872 44.000 17.17 0.00 45.88 3.67
324 325 4.115516 CCTAGATTGATCTTGGTGACACG 58.884 47.826 11.74 0.00 42.44 4.49
325 326 3.685139 AGATTGATCTTGGTGACACGT 57.315 42.857 0.00 0.00 42.67 4.49
326 327 4.801330 AGATTGATCTTGGTGACACGTA 57.199 40.909 0.00 0.00 42.67 3.57
327 328 4.748892 AGATTGATCTTGGTGACACGTAG 58.251 43.478 0.00 0.00 42.67 3.51
328 329 3.313012 TTGATCTTGGTGACACGTAGG 57.687 47.619 0.00 0.00 42.67 3.18
329 330 2.521126 TGATCTTGGTGACACGTAGGA 58.479 47.619 0.00 0.00 42.67 2.94
330 331 3.096852 TGATCTTGGTGACACGTAGGAT 58.903 45.455 0.00 2.94 42.67 3.24
331 332 3.513912 TGATCTTGGTGACACGTAGGATT 59.486 43.478 0.00 0.00 42.67 3.01
332 333 4.020573 TGATCTTGGTGACACGTAGGATTT 60.021 41.667 0.00 0.00 42.67 2.17
333 334 4.345859 TCTTGGTGACACGTAGGATTTT 57.654 40.909 0.00 0.00 42.67 1.82
334 335 4.710324 TCTTGGTGACACGTAGGATTTTT 58.290 39.130 0.00 0.00 42.67 1.94
362 363 7.999450 AAAATTATTACTACGTTCCCCAACA 57.001 32.000 0.00 0.00 32.14 3.33
363 364 7.619964 AAATTATTACTACGTTCCCCAACAG 57.380 36.000 0.00 0.00 32.14 3.16
364 365 5.743636 TTATTACTACGTTCCCCAACAGT 57.256 39.130 0.00 0.00 32.14 3.55
365 366 6.849085 TTATTACTACGTTCCCCAACAGTA 57.151 37.500 0.00 0.00 32.14 2.74
366 367 5.743636 ATTACTACGTTCCCCAACAGTAA 57.256 39.130 0.00 0.00 36.32 2.24
367 368 5.743636 TTACTACGTTCCCCAACAGTAAT 57.256 39.130 0.00 0.00 31.10 1.89
368 369 4.628963 ACTACGTTCCCCAACAGTAATT 57.371 40.909 0.00 0.00 32.14 1.40
369 370 4.976864 ACTACGTTCCCCAACAGTAATTT 58.023 39.130 0.00 0.00 32.14 1.82
370 371 4.758165 ACTACGTTCCCCAACAGTAATTTG 59.242 41.667 0.00 0.00 32.14 2.32
371 372 3.558033 ACGTTCCCCAACAGTAATTTGT 58.442 40.909 0.00 0.00 32.14 2.83
372 373 3.955551 ACGTTCCCCAACAGTAATTTGTT 59.044 39.130 0.00 0.00 41.77 2.83
373 374 4.037089 ACGTTCCCCAACAGTAATTTGTTC 59.963 41.667 0.00 0.00 39.17 3.18
374 375 4.542735 GTTCCCCAACAGTAATTTGTTCG 58.457 43.478 0.00 0.00 39.17 3.95
375 376 3.822940 TCCCCAACAGTAATTTGTTCGT 58.177 40.909 0.00 0.00 39.17 3.85
376 377 3.816523 TCCCCAACAGTAATTTGTTCGTC 59.183 43.478 0.00 0.00 39.17 4.20
377 378 3.057806 CCCCAACAGTAATTTGTTCGTCC 60.058 47.826 0.00 0.00 39.17 4.79
378 379 3.566322 CCCAACAGTAATTTGTTCGTCCA 59.434 43.478 0.00 0.00 39.17 4.02
379 380 4.217550 CCCAACAGTAATTTGTTCGTCCAT 59.782 41.667 0.00 0.00 39.17 3.41
380 381 5.390613 CCAACAGTAATTTGTTCGTCCATC 58.609 41.667 0.00 0.00 39.17 3.51
381 382 4.921470 ACAGTAATTTGTTCGTCCATCG 57.079 40.909 0.00 0.00 41.41 3.84
382 383 4.312443 ACAGTAATTTGTTCGTCCATCGT 58.688 39.130 0.00 0.00 40.80 3.73
383 384 5.472148 ACAGTAATTTGTTCGTCCATCGTA 58.528 37.500 0.00 0.00 40.80 3.43
384 385 6.103997 ACAGTAATTTGTTCGTCCATCGTAT 58.896 36.000 0.00 0.00 40.80 3.06
385 386 6.035650 ACAGTAATTTGTTCGTCCATCGTATG 59.964 38.462 0.00 0.00 40.80 2.39
386 387 6.254804 CAGTAATTTGTTCGTCCATCGTATGA 59.745 38.462 0.00 0.00 40.80 2.15
387 388 6.984474 AGTAATTTGTTCGTCCATCGTATGAT 59.016 34.615 0.00 0.00 40.80 2.45
388 389 8.139350 AGTAATTTGTTCGTCCATCGTATGATA 58.861 33.333 0.00 0.00 40.80 2.15
389 390 7.962964 AATTTGTTCGTCCATCGTATGATAT 57.037 32.000 0.00 0.00 40.80 1.63
390 391 6.763303 TTTGTTCGTCCATCGTATGATATG 57.237 37.500 0.00 0.00 40.80 1.78
391 392 5.447624 TGTTCGTCCATCGTATGATATGT 57.552 39.130 0.00 0.00 40.80 2.29
392 393 5.219633 TGTTCGTCCATCGTATGATATGTG 58.780 41.667 0.00 0.00 40.80 3.21
393 394 5.220381 GTTCGTCCATCGTATGATATGTGT 58.780 41.667 0.00 0.00 40.80 3.72
394 395 5.447624 TCGTCCATCGTATGATATGTGTT 57.552 39.130 0.00 0.00 40.80 3.32
395 396 5.458015 TCGTCCATCGTATGATATGTGTTC 58.542 41.667 0.00 0.00 40.80 3.18
396 397 4.320953 CGTCCATCGTATGATATGTGTTCG 59.679 45.833 0.00 0.00 32.18 3.95
428 429 1.611977 CTGGATAGCGGTCGATTGGTA 59.388 52.381 0.00 0.00 0.00 3.25
477 478 1.887854 TCGGTCTAATTGTCACGGACA 59.112 47.619 3.02 3.02 41.09 4.02
483 484 5.815740 GGTCTAATTGTCACGGACATAATGT 59.184 40.000 7.43 0.00 42.40 2.71
587 615 2.169769 TCTACTGAAAACTATGGCCCCG 59.830 50.000 0.00 0.00 0.00 5.73
588 616 0.034477 ACTGAAAACTATGGCCCCGG 60.034 55.000 0.00 0.00 0.00 5.73
694 748 9.729281 ATAATTTCAAGTAACGAGTTTAAGGGA 57.271 29.630 0.00 0.00 0.00 4.20
714 768 0.779997 ATTGACAACCCTCTTGCCCT 59.220 50.000 0.00 0.00 0.00 5.19
757 811 5.163893 GCTTTTGTACGTAGATGCTGCTTAA 60.164 40.000 0.00 0.00 0.00 1.85
760 814 3.697542 TGTACGTAGATGCTGCTTAAGGA 59.302 43.478 4.29 0.00 0.00 3.36
771 828 4.400884 TGCTGCTTAAGGAAGTTTGTTTGA 59.599 37.500 4.29 0.00 34.90 2.69
776 833 7.781056 TGCTTAAGGAAGTTTGTTTGATTCTT 58.219 30.769 4.29 0.00 34.90 2.52
792 850 9.099454 GTTTGATTCTTCTACTGGTTCGATAAT 57.901 33.333 0.00 0.00 0.00 1.28
793 851 9.667107 TTTGATTCTTCTACTGGTTCGATAATT 57.333 29.630 0.00 0.00 0.00 1.40
809 867 9.485591 GTTCGATAATTTTAATTTTCGCTGAGA 57.514 29.630 17.47 3.95 44.17 3.27
874 933 2.611974 AAATTCCAGCGCAGTTTACG 57.388 45.000 11.47 0.00 0.00 3.18
948 1016 0.318441 TCTTCCAGAAGCGACACCTG 59.682 55.000 2.38 0.00 38.28 4.00
983 1051 3.458779 TTTGCGTAAAATCAGCGTACC 57.541 42.857 0.00 0.00 0.00 3.34
1219 2083 0.903942 ATTAAACGCCGTACTCCCCA 59.096 50.000 0.00 0.00 0.00 4.96
1253 2117 1.595382 GTTCATCGCCTCCCATCCG 60.595 63.158 0.00 0.00 0.00 4.18
1294 2158 3.940852 TGCTTGTATCTCTCGTTACCGTA 59.059 43.478 0.00 0.00 35.01 4.02
1295 2159 4.395854 TGCTTGTATCTCTCGTTACCGTAA 59.604 41.667 0.00 0.00 35.01 3.18
1296 2160 5.066893 TGCTTGTATCTCTCGTTACCGTAAT 59.933 40.000 0.00 0.00 35.01 1.89
1297 2161 5.624491 GCTTGTATCTCTCGTTACCGTAATC 59.376 44.000 0.00 0.00 35.01 1.75
1298 2162 5.679734 TGTATCTCTCGTTACCGTAATCC 57.320 43.478 0.00 0.00 35.01 3.01
1299 2163 3.892918 ATCTCTCGTTACCGTAATCCG 57.107 47.619 0.00 0.00 35.01 4.18
1300 2164 2.632377 TCTCTCGTTACCGTAATCCGT 58.368 47.619 0.00 0.00 35.01 4.69
1523 2388 8.248253 TGCATCGACTGTTTCTTATTCTACTAA 58.752 33.333 0.00 0.00 0.00 2.24
1524 2389 8.747666 GCATCGACTGTTTCTTATTCTACTAAG 58.252 37.037 0.00 0.00 0.00 2.18
1525 2390 9.790389 CATCGACTGTTTCTTATTCTACTAAGT 57.210 33.333 0.00 0.00 31.85 2.24
1539 2404 7.507797 TTCTACTAAGTACTACTCCCTCTGT 57.492 40.000 0.00 0.00 0.00 3.41
1540 2405 7.507797 TCTACTAAGTACTACTCCCTCTGTT 57.492 40.000 0.00 0.00 0.00 3.16
1541 2406 7.563906 TCTACTAAGTACTACTCCCTCTGTTC 58.436 42.308 0.00 0.00 0.00 3.18
1542 2407 6.391479 ACTAAGTACTACTCCCTCTGTTCT 57.609 41.667 0.00 0.00 0.00 3.01
1543 2408 7.507797 ACTAAGTACTACTCCCTCTGTTCTA 57.492 40.000 0.00 0.00 0.00 2.10
1544 2409 7.926705 ACTAAGTACTACTCCCTCTGTTCTAA 58.073 38.462 0.00 0.00 0.00 2.10
1545 2410 8.389366 ACTAAGTACTACTCCCTCTGTTCTAAA 58.611 37.037 0.00 0.00 0.00 1.85
1546 2411 9.240734 CTAAGTACTACTCCCTCTGTTCTAAAA 57.759 37.037 0.00 0.00 0.00 1.52
1547 2412 8.667592 AAGTACTACTCCCTCTGTTCTAAAAT 57.332 34.615 0.00 0.00 0.00 1.82
1548 2413 9.765295 AAGTACTACTCCCTCTGTTCTAAAATA 57.235 33.333 0.00 0.00 0.00 1.40
1549 2414 9.411189 AGTACTACTCCCTCTGTTCTAAAATAG 57.589 37.037 0.00 0.00 0.00 1.73
1550 2415 9.406113 GTACTACTCCCTCTGTTCTAAAATAGA 57.594 37.037 0.00 0.00 32.42 1.98
1552 2417 8.919145 ACTACTCCCTCTGTTCTAAAATAGATG 58.081 37.037 0.00 0.00 32.88 2.90
1553 2418 7.979786 ACTCCCTCTGTTCTAAAATAGATGA 57.020 36.000 0.00 0.00 32.88 2.92
1554 2419 7.787028 ACTCCCTCTGTTCTAAAATAGATGAC 58.213 38.462 0.00 0.00 32.88 3.06
1555 2420 7.125792 TCCCTCTGTTCTAAAATAGATGACC 57.874 40.000 0.00 0.00 32.88 4.02
1556 2421 6.099845 TCCCTCTGTTCTAAAATAGATGACCC 59.900 42.308 0.00 0.00 32.88 4.46
1557 2422 6.126768 CCCTCTGTTCTAAAATAGATGACCCA 60.127 42.308 0.00 0.00 32.88 4.51
1558 2423 7.338710 CCTCTGTTCTAAAATAGATGACCCAA 58.661 38.462 0.00 0.00 32.88 4.12
1559 2424 7.281100 CCTCTGTTCTAAAATAGATGACCCAAC 59.719 40.741 0.00 0.00 32.88 3.77
1560 2425 7.918076 TCTGTTCTAAAATAGATGACCCAACT 58.082 34.615 0.00 0.00 34.22 3.16
1561 2426 8.383175 TCTGTTCTAAAATAGATGACCCAACTT 58.617 33.333 0.00 0.00 34.22 2.66
1562 2427 8.934023 TGTTCTAAAATAGATGACCCAACTTT 57.066 30.769 0.00 0.00 34.22 2.66
1563 2428 8.792633 TGTTCTAAAATAGATGACCCAACTTTG 58.207 33.333 0.00 0.00 34.22 2.77
1564 2429 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
1566 2431 9.444600 TCTAAAATAGATGACCCAACTTTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
1567 2432 9.449719 CTAAAATAGATGACCCAACTTTGTACT 57.550 33.333 0.00 0.00 0.00 2.73
1569 2434 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1570 2435 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
1571 2436 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
1572 2437 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
1574 2439 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
1575 2440 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
1576 2441 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
1577 2442 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
1600 2465 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1601 2466 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1602 2467 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1603 2468 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1604 2469 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1605 2470 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1606 2471 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1607 2472 5.800296 TGAGTCATCTATTTTGGAACGGAA 58.200 37.500 0.00 0.00 0.00 4.30
1608 2473 5.874810 TGAGTCATCTATTTTGGAACGGAAG 59.125 40.000 0.00 0.00 0.00 3.46
1609 2474 5.186198 AGTCATCTATTTTGGAACGGAAGG 58.814 41.667 0.00 0.00 0.00 3.46
1610 2475 5.045869 AGTCATCTATTTTGGAACGGAAGGA 60.046 40.000 0.00 0.00 0.00 3.36
1611 2476 5.294552 GTCATCTATTTTGGAACGGAAGGAG 59.705 44.000 0.00 0.00 0.00 3.69
1746 2611 6.347725 GCGACAACTTTGATATAGCTAATGGG 60.348 42.308 0.00 0.00 0.00 4.00
1752 2617 3.889815 TGATATAGCTAATGGGCATGGC 58.110 45.455 11.56 11.56 34.17 4.40
1831 2696 6.035327 GTCTATTTTTAGCGTTGTATCACCGT 59.965 38.462 0.00 0.00 0.00 4.83
1857 2722 0.328258 AAGATGGACCGGACCTTTGG 59.672 55.000 23.51 0.00 0.00 3.28
1892 2757 4.261363 GCTGAAATATGCCTTAGTTGCCTC 60.261 45.833 0.00 0.00 0.00 4.70
1908 2773 2.685388 TGCCTCGAATGTGTTTTCAACA 59.315 40.909 0.00 0.00 39.52 3.33
2138 3005 3.451178 GGTACTCTCTTCCTAACATGCCA 59.549 47.826 0.00 0.00 0.00 4.92
2194 3061 6.599244 ACTGTTGGAGGTAATATCACATTGTG 59.401 38.462 10.64 10.64 34.45 3.33
2256 3123 5.644206 GCTAGCAAAGTAGCTTTAAGGTTCT 59.356 40.000 10.63 0.00 43.70 3.01
2265 3132 2.364002 GCTTTAAGGTTCTGCCCAACAA 59.636 45.455 0.00 0.00 38.26 2.83
2376 3245 7.790823 AAAATATGCAAAACTTGAACTGCTT 57.209 28.000 0.00 0.00 35.78 3.91
2508 3380 4.576463 AGAAGGCACAAAGTACAACTCAAG 59.424 41.667 0.00 0.00 0.00 3.02
2691 3567 4.184629 GCCTATATGACTATTTCCGCCAG 58.815 47.826 0.00 0.00 0.00 4.85
2715 3591 4.946772 TGACAGTTTCTTTTGTGATGTCCA 59.053 37.500 0.00 0.00 35.79 4.02
2806 3683 8.541899 TTTTCCCTTGGTTATTCTGTAAGTTT 57.458 30.769 0.00 0.00 33.76 2.66
3240 4118 7.990541 TGAATTTCATTTATCATTTGCTCGG 57.009 32.000 0.00 0.00 0.00 4.63
3397 4276 7.544622 ACTGAATCGTATAAACAGAGTAGCAA 58.455 34.615 0.00 0.00 33.53 3.91
3399 4278 8.352752 TGAATCGTATAAACAGAGTAGCAATG 57.647 34.615 0.00 0.00 0.00 2.82
3686 4565 5.182760 GCAAGATTGGAGAATGACTGAAACT 59.817 40.000 0.00 0.00 0.00 2.66
3687 4566 6.622462 GCAAGATTGGAGAATGACTGAAACTC 60.622 42.308 0.00 0.00 0.00 3.01
3719 4686 3.441572 GCTACCTGTGAGAATGCAAACAT 59.558 43.478 0.00 0.00 38.49 2.71
3950 5191 0.537188 AACCTATCACTGCCTGTCCG 59.463 55.000 0.00 0.00 0.00 4.79
3964 5205 3.296628 CCTGTCCGTGAATTTGTTTTCG 58.703 45.455 0.00 0.00 0.00 3.46
4032 5273 7.100458 ACAAATACAGATTGGGCATACTTTC 57.900 36.000 0.00 0.00 32.02 2.62
4039 5280 7.573710 ACAGATTGGGCATACTTTCTGTTATA 58.426 34.615 0.00 0.00 40.51 0.98
4040 5281 8.220559 ACAGATTGGGCATACTTTCTGTTATAT 58.779 33.333 0.00 0.00 40.51 0.86
4208 5452 6.194967 AGGGAAGGACAAGAAAAGAAAAAGA 58.805 36.000 0.00 0.00 0.00 2.52
4209 5453 6.667848 AGGGAAGGACAAGAAAAGAAAAAGAA 59.332 34.615 0.00 0.00 0.00 2.52
4210 5454 6.980978 GGGAAGGACAAGAAAAGAAAAAGAAG 59.019 38.462 0.00 0.00 0.00 2.85
4240 5484 0.884704 ACAAGTGTAAGCAGCGGGTG 60.885 55.000 2.14 2.14 0.00 4.61
4272 5516 1.902508 GGACTGTCCAGATCTCAACCA 59.097 52.381 21.70 0.00 36.28 3.67
4352 5605 2.022195 TGTCCTCGTAGTATCAGGCAC 58.978 52.381 0.00 0.00 0.00 5.01
4353 5606 1.002684 GTCCTCGTAGTATCAGGCACG 60.003 57.143 0.00 0.00 35.78 5.34
4354 5607 1.022735 CCTCGTAGTATCAGGCACGT 58.977 55.000 0.00 0.00 35.91 4.49
4355 5608 1.268589 CCTCGTAGTATCAGGCACGTG 60.269 57.143 12.28 12.28 35.91 4.49
4356 5609 0.736636 TCGTAGTATCAGGCACGTGG 59.263 55.000 18.88 0.08 35.91 4.94
4357 5610 0.736636 CGTAGTATCAGGCACGTGGA 59.263 55.000 18.88 6.56 0.00 4.02
4358 5611 1.533338 CGTAGTATCAGGCACGTGGAC 60.533 57.143 18.88 0.44 0.00 4.02
4359 5612 1.749634 GTAGTATCAGGCACGTGGACT 59.250 52.381 18.88 2.20 31.88 3.85
4360 5613 2.139323 AGTATCAGGCACGTGGACTA 57.861 50.000 18.88 0.00 29.10 2.59
4369 5622 2.215196 GCACGTGGACTAAAGGTGAAA 58.785 47.619 18.88 0.00 35.88 2.69
4371 5624 3.199677 CACGTGGACTAAAGGTGAAACA 58.800 45.455 7.95 0.00 39.98 2.83
4495 5748 5.220854 GCATTGGCTAGTCGTATTGTTGAAT 60.221 40.000 0.00 0.00 36.96 2.57
4501 5754 7.147863 TGGCTAGTCGTATTGTTGAATTAGGTA 60.148 37.037 0.00 0.00 0.00 3.08
4570 5823 4.265206 GCATGTGCCAGGGCTAAT 57.735 55.556 12.19 2.29 42.51 1.73
4624 5877 4.411869 TGATGGTGGTATGCTCTTCCATTA 59.588 41.667 0.00 0.00 36.07 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.402896 CCAAGCGCTATGGAGGAGGA 61.403 60.000 25.31 0.00 40.56 3.71
1 2 1.070445 CCAAGCGCTATGGAGGAGG 59.930 63.158 25.31 9.39 40.56 4.30
2 3 1.596477 GCCAAGCGCTATGGAGGAG 60.596 63.158 30.45 12.77 40.56 3.69
3 4 2.505982 GCCAAGCGCTATGGAGGA 59.494 61.111 30.45 0.00 40.56 3.71
15 16 2.396955 CCAGCAGAGCTTCGCCAAG 61.397 63.158 4.80 0.00 36.40 3.61
16 17 2.359107 CCAGCAGAGCTTCGCCAA 60.359 61.111 4.80 0.00 36.40 4.52
17 18 3.306595 CTCCAGCAGAGCTTCGCCA 62.307 63.158 4.80 0.00 36.40 5.69
18 19 2.511145 CTCCAGCAGAGCTTCGCC 60.511 66.667 4.80 0.00 36.40 5.54
19 20 1.079543 TTCTCCAGCAGAGCTTCGC 60.080 57.895 0.21 0.21 42.90 4.70
20 21 0.739112 GGTTCTCCAGCAGAGCTTCG 60.739 60.000 0.00 0.00 42.90 3.79
21 22 0.322975 TGGTTCTCCAGCAGAGCTTC 59.677 55.000 0.00 0.00 42.90 3.86
22 23 0.036022 GTGGTTCTCCAGCAGAGCTT 59.964 55.000 0.00 0.00 45.24 3.74
23 24 1.676384 GTGGTTCTCCAGCAGAGCT 59.324 57.895 0.00 0.00 45.24 4.09
24 25 1.739562 CGTGGTTCTCCAGCAGAGC 60.740 63.158 0.00 0.00 45.24 4.09
25 26 0.108898 CTCGTGGTTCTCCAGCAGAG 60.109 60.000 0.00 0.00 45.24 3.35
26 27 1.967535 CTCGTGGTTCTCCAGCAGA 59.032 57.895 0.00 0.00 45.24 4.26
27 28 1.739562 GCTCGTGGTTCTCCAGCAG 60.740 63.158 0.00 0.00 45.24 4.24
28 29 2.159819 GAGCTCGTGGTTCTCCAGCA 62.160 60.000 0.00 0.00 45.24 4.41
29 30 1.446966 GAGCTCGTGGTTCTCCAGC 60.447 63.158 0.00 0.00 45.24 4.85
30 31 1.216710 GGAGCTCGTGGTTCTCCAG 59.783 63.158 7.83 0.00 45.24 3.86
31 32 3.377656 GGAGCTCGTGGTTCTCCA 58.622 61.111 7.83 0.00 44.38 3.86
32 33 1.079750 GTGGAGCTCGTGGTTCTCC 60.080 63.158 7.83 0.00 45.02 3.71
33 34 1.079750 GGTGGAGCTCGTGGTTCTC 60.080 63.158 7.83 0.00 0.00 2.87
34 35 1.837051 TGGTGGAGCTCGTGGTTCT 60.837 57.895 7.83 0.00 0.00 3.01
35 36 1.668151 GTGGTGGAGCTCGTGGTTC 60.668 63.158 7.83 0.00 0.00 3.62
36 37 2.426023 GTGGTGGAGCTCGTGGTT 59.574 61.111 7.83 0.00 0.00 3.67
37 38 3.626924 GGTGGTGGAGCTCGTGGT 61.627 66.667 7.83 0.00 0.00 4.16
38 39 3.625897 TGGTGGTGGAGCTCGTGG 61.626 66.667 7.83 0.00 0.00 4.94
39 40 2.357517 GTGGTGGTGGAGCTCGTG 60.358 66.667 7.83 0.00 0.00 4.35
40 41 3.991051 CGTGGTGGTGGAGCTCGT 61.991 66.667 7.83 0.00 35.02 4.18
41 42 3.916392 GACGTGGTGGTGGAGCTCG 62.916 68.421 7.83 0.00 43.06 5.03
42 43 2.048127 GACGTGGTGGTGGAGCTC 60.048 66.667 4.71 4.71 0.00 4.09
43 44 3.991051 CGACGTGGTGGTGGAGCT 61.991 66.667 0.00 0.00 0.00 4.09
44 45 4.295119 ACGACGTGGTGGTGGAGC 62.295 66.667 1.11 0.00 0.00 4.70
45 46 2.049433 GACGACGTGGTGGTGGAG 60.049 66.667 8.32 0.00 0.00 3.86
46 47 3.968568 CGACGACGTGGTGGTGGA 61.969 66.667 8.32 0.00 34.56 4.02
60 61 3.112709 GAACTCCGGCAGCACGAC 61.113 66.667 0.00 0.00 35.47 4.34
61 62 3.282745 GAGAACTCCGGCAGCACGA 62.283 63.158 0.00 0.00 35.47 4.35
62 63 2.811317 GAGAACTCCGGCAGCACG 60.811 66.667 0.00 0.00 0.00 5.34
63 64 2.435059 GGAGAACTCCGGCAGCAC 60.435 66.667 5.06 0.00 40.36 4.40
72 73 3.169908 AGGAGAAGTTGAGGGAGAACTC 58.830 50.000 0.00 0.00 32.33 3.01
73 74 3.169908 GAGGAGAAGTTGAGGGAGAACT 58.830 50.000 0.00 0.00 35.08 3.01
74 75 3.169908 AGAGGAGAAGTTGAGGGAGAAC 58.830 50.000 0.00 0.00 0.00 3.01
75 76 3.436243 GAGAGGAGAAGTTGAGGGAGAA 58.564 50.000 0.00 0.00 0.00 2.87
76 77 2.291930 GGAGAGGAGAAGTTGAGGGAGA 60.292 54.545 0.00 0.00 0.00 3.71
77 78 2.107366 GGAGAGGAGAAGTTGAGGGAG 58.893 57.143 0.00 0.00 0.00 4.30
78 79 1.273324 GGGAGAGGAGAAGTTGAGGGA 60.273 57.143 0.00 0.00 0.00 4.20
79 80 1.199615 GGGAGAGGAGAAGTTGAGGG 58.800 60.000 0.00 0.00 0.00 4.30
80 81 1.199615 GGGGAGAGGAGAAGTTGAGG 58.800 60.000 0.00 0.00 0.00 3.86
81 82 2.235898 CAAGGGGAGAGGAGAAGTTGAG 59.764 54.545 0.00 0.00 0.00 3.02
82 83 2.260822 CAAGGGGAGAGGAGAAGTTGA 58.739 52.381 0.00 0.00 0.00 3.18
83 84 1.339535 GCAAGGGGAGAGGAGAAGTTG 60.340 57.143 0.00 0.00 0.00 3.16
84 85 0.988063 GCAAGGGGAGAGGAGAAGTT 59.012 55.000 0.00 0.00 0.00 2.66
85 86 0.118144 AGCAAGGGGAGAGGAGAAGT 59.882 55.000 0.00 0.00 0.00 3.01
86 87 0.540923 CAGCAAGGGGAGAGGAGAAG 59.459 60.000 0.00 0.00 0.00 2.85
87 88 0.911525 CCAGCAAGGGGAGAGGAGAA 60.912 60.000 0.00 0.00 0.00 2.87
88 89 1.306482 CCAGCAAGGGGAGAGGAGA 60.306 63.158 0.00 0.00 0.00 3.71
89 90 0.693767 ATCCAGCAAGGGGAGAGGAG 60.694 60.000 0.00 0.00 37.96 3.69
90 91 0.692419 GATCCAGCAAGGGGAGAGGA 60.692 60.000 0.00 0.00 37.96 3.71
91 92 0.984961 TGATCCAGCAAGGGGAGAGG 60.985 60.000 0.00 0.00 37.96 3.69
92 93 0.914644 TTGATCCAGCAAGGGGAGAG 59.085 55.000 0.00 0.00 37.96 3.20
93 94 0.914644 CTTGATCCAGCAAGGGGAGA 59.085 55.000 0.00 0.00 41.15 3.71
94 95 0.914644 TCTTGATCCAGCAAGGGGAG 59.085 55.000 4.79 0.00 44.14 4.30
95 96 1.283029 CTTCTTGATCCAGCAAGGGGA 59.717 52.381 4.79 0.00 44.14 4.81
96 97 1.684248 CCTTCTTGATCCAGCAAGGGG 60.684 57.143 4.79 4.42 44.14 4.79
97 98 1.283029 TCCTTCTTGATCCAGCAAGGG 59.717 52.381 17.39 0.00 44.14 3.95
98 99 2.641305 CTCCTTCTTGATCCAGCAAGG 58.359 52.381 14.03 14.03 44.14 3.61
99 100 2.238144 TCCTCCTTCTTGATCCAGCAAG 59.762 50.000 0.00 0.00 45.10 4.01
100 101 2.238144 CTCCTCCTTCTTGATCCAGCAA 59.762 50.000 0.00 0.00 0.00 3.91
101 102 1.836166 CTCCTCCTTCTTGATCCAGCA 59.164 52.381 0.00 0.00 0.00 4.41
102 103 2.114616 TCTCCTCCTTCTTGATCCAGC 58.885 52.381 0.00 0.00 0.00 4.85
103 104 2.100584 CGTCTCCTCCTTCTTGATCCAG 59.899 54.545 0.00 0.00 0.00 3.86
104 105 2.103373 CGTCTCCTCCTTCTTGATCCA 58.897 52.381 0.00 0.00 0.00 3.41
105 106 2.100087 GACGTCTCCTCCTTCTTGATCC 59.900 54.545 8.70 0.00 0.00 3.36
106 107 2.100087 GGACGTCTCCTCCTTCTTGATC 59.900 54.545 16.46 0.00 33.07 2.92
107 108 2.104170 GGACGTCTCCTCCTTCTTGAT 58.896 52.381 16.46 0.00 33.07 2.57
108 109 1.546961 GGACGTCTCCTCCTTCTTGA 58.453 55.000 16.46 0.00 33.07 3.02
109 110 0.533032 GGGACGTCTCCTCCTTCTTG 59.467 60.000 16.46 0.00 36.68 3.02
110 111 0.615261 GGGGACGTCTCCTCCTTCTT 60.615 60.000 27.83 0.00 36.68 2.52
111 112 1.000612 GGGGACGTCTCCTCCTTCT 59.999 63.158 27.83 0.00 36.68 2.85
112 113 3.618652 GGGGACGTCTCCTCCTTC 58.381 66.667 27.83 0.00 36.68 3.46
124 125 4.446413 CACGTACAGCCCGGGGAC 62.446 72.222 25.28 6.25 0.00 4.46
126 127 4.752879 CACACGTACAGCCCGGGG 62.753 72.222 25.28 9.31 31.63 5.73
127 128 3.524648 AACACACGTACAGCCCGGG 62.525 63.158 19.09 19.09 34.16 5.73
128 129 2.029964 AACACACGTACAGCCCGG 59.970 61.111 0.00 0.00 0.00 5.73
129 130 0.876777 TTCAACACACGTACAGCCCG 60.877 55.000 0.00 0.00 0.00 6.13
130 131 0.584876 GTTCAACACACGTACAGCCC 59.415 55.000 0.00 0.00 0.00 5.19
131 132 0.231279 CGTTCAACACACGTACAGCC 59.769 55.000 0.00 0.00 32.80 4.85
132 133 0.382636 GCGTTCAACACACGTACAGC 60.383 55.000 0.00 0.00 39.92 4.40
133 134 0.111878 CGCGTTCAACACACGTACAG 60.112 55.000 0.00 0.00 39.92 2.74
134 135 1.481019 CCGCGTTCAACACACGTACA 61.481 55.000 4.92 0.00 39.92 2.90
135 136 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
136 137 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
137 138 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
138 139 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
139 140 2.935955 CCTCCGCGTTCAACACAC 59.064 61.111 4.92 0.00 0.00 3.82
140 141 2.970324 GCCTCCGCGTTCAACACA 60.970 61.111 4.92 0.00 0.00 3.72
160 161 2.558554 ATCCAAGAGCCGAACGGACG 62.559 60.000 17.63 0.00 37.50 4.79
161 162 0.806492 GATCCAAGAGCCGAACGGAC 60.806 60.000 17.63 9.67 37.50 4.79
162 163 1.515954 GATCCAAGAGCCGAACGGA 59.484 57.895 17.63 0.00 37.50 4.69
163 164 1.878522 CGATCCAAGAGCCGAACGG 60.879 63.158 9.00 9.00 38.57 4.44
164 165 1.878522 CCGATCCAAGAGCCGAACG 60.879 63.158 0.00 0.00 0.00 3.95
165 166 0.105039 ATCCGATCCAAGAGCCGAAC 59.895 55.000 0.00 0.00 0.00 3.95
166 167 0.389391 GATCCGATCCAAGAGCCGAA 59.611 55.000 0.00 0.00 0.00 4.30
167 168 0.468214 AGATCCGATCCAAGAGCCGA 60.468 55.000 4.67 0.00 0.00 5.54
168 169 0.390860 AAGATCCGATCCAAGAGCCG 59.609 55.000 4.67 0.00 0.00 5.52
169 170 1.270571 GGAAGATCCGATCCAAGAGCC 60.271 57.143 4.67 0.00 35.71 4.70
170 171 2.162319 GGAAGATCCGATCCAAGAGC 57.838 55.000 4.67 0.00 35.71 4.09
181 182 3.528009 GATTCAAATCGCGGAAGATCC 57.472 47.619 6.13 0.00 0.00 3.36
192 193 1.071436 GTACTCGCGGCGATTCAAATC 60.071 52.381 26.60 8.52 34.61 2.17
193 194 0.928229 GTACTCGCGGCGATTCAAAT 59.072 50.000 26.60 9.68 34.61 2.32
194 195 1.407721 CGTACTCGCGGCGATTCAAA 61.408 55.000 26.60 2.28 34.61 2.69
195 196 1.870458 CGTACTCGCGGCGATTCAA 60.870 57.895 26.60 8.68 34.61 2.69
196 197 2.277692 CGTACTCGCGGCGATTCA 60.278 61.111 26.60 10.93 34.61 2.57
197 198 2.023741 TCGTACTCGCGGCGATTC 59.976 61.111 26.60 16.73 34.61 2.52
198 199 2.277756 GTCGTACTCGCGGCGATT 60.278 61.111 26.60 22.48 37.00 3.34
199 200 3.165670 GAGTCGTACTCGCGGCGAT 62.166 63.158 26.60 17.43 41.85 4.58
200 201 3.857854 GAGTCGTACTCGCGGCGA 61.858 66.667 24.84 24.84 41.85 5.54
201 202 4.883300 GGAGTCGTACTCGCGGCG 62.883 72.222 17.70 17.70 45.96 6.46
202 203 2.985486 GATGGAGTCGTACTCGCGGC 62.985 65.000 6.13 0.00 45.96 6.53
203 204 1.009900 GATGGAGTCGTACTCGCGG 60.010 63.158 6.13 0.00 45.96 6.46
204 205 0.098200 TTGATGGAGTCGTACTCGCG 59.902 55.000 0.00 0.00 45.96 5.87
205 206 1.546834 GTTGATGGAGTCGTACTCGC 58.453 55.000 8.33 3.96 45.96 5.03
206 207 1.531264 CGGTTGATGGAGTCGTACTCG 60.531 57.143 8.33 0.00 45.96 4.18
207 208 1.798079 GCGGTTGATGGAGTCGTACTC 60.798 57.143 6.50 6.50 44.32 2.59
208 209 0.172803 GCGGTTGATGGAGTCGTACT 59.827 55.000 0.00 0.00 0.00 2.73
209 210 1.138047 CGCGGTTGATGGAGTCGTAC 61.138 60.000 0.00 0.00 0.00 3.67
210 211 1.138036 CGCGGTTGATGGAGTCGTA 59.862 57.895 0.00 0.00 0.00 3.43
211 212 2.126071 CGCGGTTGATGGAGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
212 213 1.683790 GAACGCGGTTGATGGAGTCG 61.684 60.000 12.47 0.00 0.00 4.18
213 214 0.389948 AGAACGCGGTTGATGGAGTC 60.390 55.000 12.47 0.00 0.00 3.36
214 215 0.034896 AAGAACGCGGTTGATGGAGT 59.965 50.000 12.47 0.00 0.00 3.85
215 216 0.443869 CAAGAACGCGGTTGATGGAG 59.556 55.000 12.47 0.00 0.00 3.86
216 217 0.250124 ACAAGAACGCGGTTGATGGA 60.250 50.000 20.59 0.00 0.00 3.41
217 218 1.434555 TACAAGAACGCGGTTGATGG 58.565 50.000 20.59 1.93 0.00 3.51
218 219 2.720590 CGTTACAAGAACGCGGTTGATG 60.721 50.000 20.59 12.77 36.82 3.07
219 220 1.458064 CGTTACAAGAACGCGGTTGAT 59.542 47.619 20.59 10.19 36.82 2.57
220 221 0.854062 CGTTACAAGAACGCGGTTGA 59.146 50.000 20.59 5.90 36.82 3.18
221 222 3.338603 CGTTACAAGAACGCGGTTG 57.661 52.632 12.47 13.64 36.82 3.77
227 228 3.921081 CGGAAGCGTTACAAGAACG 57.079 52.632 5.50 5.50 45.56 3.95
245 246 2.317530 ACCCTTGAAGATCGCTAAGC 57.682 50.000 0.00 0.00 0.00 3.09
246 247 5.201713 TCATACCCTTGAAGATCGCTAAG 57.798 43.478 0.00 0.00 0.00 2.18
247 248 5.607939 TTCATACCCTTGAAGATCGCTAA 57.392 39.130 0.00 0.00 32.07 3.09
256 257 4.517285 GAGTGCATCTTCATACCCTTGAA 58.483 43.478 0.00 0.00 34.55 2.69
257 258 3.118261 GGAGTGCATCTTCATACCCTTGA 60.118 47.826 0.00 0.00 0.00 3.02
258 259 3.209410 GGAGTGCATCTTCATACCCTTG 58.791 50.000 0.00 0.00 0.00 3.61
259 260 2.173569 GGGAGTGCATCTTCATACCCTT 59.826 50.000 0.00 0.00 34.08 3.95
260 261 1.771255 GGGAGTGCATCTTCATACCCT 59.229 52.381 0.00 0.00 34.08 4.34
261 262 1.771255 AGGGAGTGCATCTTCATACCC 59.229 52.381 0.00 0.00 35.74 3.69
262 263 2.703007 AGAGGGAGTGCATCTTCATACC 59.297 50.000 0.00 0.00 0.00 2.73
263 264 5.480073 AGATAGAGGGAGTGCATCTTCATAC 59.520 44.000 3.57 0.00 0.00 2.39
264 265 5.649265 AGATAGAGGGAGTGCATCTTCATA 58.351 41.667 3.57 0.00 0.00 2.15
265 266 4.491675 AGATAGAGGGAGTGCATCTTCAT 58.508 43.478 3.57 0.00 0.00 2.57
266 267 3.894427 GAGATAGAGGGAGTGCATCTTCA 59.106 47.826 3.57 0.00 0.00 3.02
267 268 3.057596 CGAGATAGAGGGAGTGCATCTTC 60.058 52.174 3.57 2.63 0.00 2.87
268 269 2.890311 CGAGATAGAGGGAGTGCATCTT 59.110 50.000 3.57 0.00 0.00 2.40
269 270 2.158534 ACGAGATAGAGGGAGTGCATCT 60.159 50.000 3.78 3.78 0.00 2.90
270 271 2.235016 ACGAGATAGAGGGAGTGCATC 58.765 52.381 0.00 0.00 0.00 3.91
271 272 2.363680 CAACGAGATAGAGGGAGTGCAT 59.636 50.000 0.00 0.00 0.00 3.96
272 273 1.751351 CAACGAGATAGAGGGAGTGCA 59.249 52.381 0.00 0.00 0.00 4.57
273 274 1.537135 GCAACGAGATAGAGGGAGTGC 60.537 57.143 0.00 0.00 0.00 4.40
274 275 2.028130 AGCAACGAGATAGAGGGAGTG 58.972 52.381 0.00 0.00 0.00 3.51
275 276 2.445682 AGCAACGAGATAGAGGGAGT 57.554 50.000 0.00 0.00 0.00 3.85
276 277 2.227865 GCTAGCAACGAGATAGAGGGAG 59.772 54.545 10.63 0.00 38.50 4.30
277 278 2.158593 AGCTAGCAACGAGATAGAGGGA 60.159 50.000 18.83 0.00 38.50 4.20
278 279 2.235016 AGCTAGCAACGAGATAGAGGG 58.765 52.381 18.83 0.00 38.50 4.30
279 280 3.568007 AGAAGCTAGCAACGAGATAGAGG 59.432 47.826 18.83 0.00 38.50 3.69
280 281 4.320202 GGAGAAGCTAGCAACGAGATAGAG 60.320 50.000 18.83 0.00 38.50 2.43
281 282 3.566322 GGAGAAGCTAGCAACGAGATAGA 59.434 47.826 18.83 0.00 38.50 1.98
282 283 3.568007 AGGAGAAGCTAGCAACGAGATAG 59.432 47.826 18.83 0.00 39.23 2.08
283 284 3.556999 AGGAGAAGCTAGCAACGAGATA 58.443 45.455 18.83 0.00 0.00 1.98
284 285 2.383855 AGGAGAAGCTAGCAACGAGAT 58.616 47.619 18.83 0.00 0.00 2.75
285 286 1.840737 AGGAGAAGCTAGCAACGAGA 58.159 50.000 18.83 0.00 0.00 4.04
286 287 2.946329 TCTAGGAGAAGCTAGCAACGAG 59.054 50.000 18.83 7.57 0.00 4.18
287 288 3.000684 TCTAGGAGAAGCTAGCAACGA 57.999 47.619 18.83 0.12 0.00 3.85
288 289 4.047822 CAATCTAGGAGAAGCTAGCAACG 58.952 47.826 18.83 0.00 0.00 4.10
289 290 5.269505 TCAATCTAGGAGAAGCTAGCAAC 57.730 43.478 18.83 10.23 0.00 4.17
290 291 5.837979 AGATCAATCTAGGAGAAGCTAGCAA 59.162 40.000 18.83 0.00 34.85 3.91
291 292 5.392995 AGATCAATCTAGGAGAAGCTAGCA 58.607 41.667 18.83 0.00 34.85 3.49
292 293 5.982890 AGATCAATCTAGGAGAAGCTAGC 57.017 43.478 6.62 6.62 34.85 3.42
293 294 6.267471 ACCAAGATCAATCTAGGAGAAGCTAG 59.733 42.308 0.00 0.00 35.76 3.42
294 295 6.041409 CACCAAGATCAATCTAGGAGAAGCTA 59.959 42.308 0.00 0.00 35.76 3.32
295 296 4.968080 ACCAAGATCAATCTAGGAGAAGCT 59.032 41.667 0.00 0.00 35.76 3.74
296 297 5.055812 CACCAAGATCAATCTAGGAGAAGC 58.944 45.833 0.00 0.00 35.76 3.86
297 298 6.127225 TGTCACCAAGATCAATCTAGGAGAAG 60.127 42.308 0.00 0.00 35.76 2.85
298 299 5.721480 TGTCACCAAGATCAATCTAGGAGAA 59.279 40.000 0.00 0.00 35.76 2.87
299 300 5.127845 GTGTCACCAAGATCAATCTAGGAGA 59.872 44.000 0.00 0.00 35.76 3.71
300 301 5.355596 GTGTCACCAAGATCAATCTAGGAG 58.644 45.833 0.00 0.00 35.76 3.69
301 302 4.142160 CGTGTCACCAAGATCAATCTAGGA 60.142 45.833 0.00 0.00 35.76 2.94
302 303 4.115516 CGTGTCACCAAGATCAATCTAGG 58.884 47.826 0.00 0.00 35.76 3.02
303 304 4.748892 ACGTGTCACCAAGATCAATCTAG 58.251 43.478 0.00 0.00 35.76 2.43
304 305 4.801330 ACGTGTCACCAAGATCAATCTA 57.199 40.909 0.00 0.00 35.76 1.98
305 306 3.685139 ACGTGTCACCAAGATCAATCT 57.315 42.857 0.00 0.00 39.22 2.40
306 307 3.865745 CCTACGTGTCACCAAGATCAATC 59.134 47.826 0.00 0.00 0.00 2.67
307 308 3.513912 TCCTACGTGTCACCAAGATCAAT 59.486 43.478 0.00 0.00 0.00 2.57
308 309 2.894765 TCCTACGTGTCACCAAGATCAA 59.105 45.455 0.00 0.00 0.00 2.57
309 310 2.521126 TCCTACGTGTCACCAAGATCA 58.479 47.619 0.00 0.00 0.00 2.92
310 311 3.802948 ATCCTACGTGTCACCAAGATC 57.197 47.619 0.00 0.00 0.00 2.75
311 312 4.553330 AAATCCTACGTGTCACCAAGAT 57.447 40.909 0.00 0.00 0.00 2.40
312 313 4.345859 AAAATCCTACGTGTCACCAAGA 57.654 40.909 0.00 0.00 0.00 3.02
336 337 9.512588 TGTTGGGGAACGTAGTAATAATTTTAA 57.487 29.630 0.00 0.00 45.00 1.52
337 338 9.165035 CTGTTGGGGAACGTAGTAATAATTTTA 57.835 33.333 0.00 0.00 45.00 1.52
338 339 7.666804 ACTGTTGGGGAACGTAGTAATAATTTT 59.333 33.333 0.00 0.00 45.00 1.82
339 340 7.170277 ACTGTTGGGGAACGTAGTAATAATTT 58.830 34.615 0.00 0.00 45.00 1.82
340 341 6.714278 ACTGTTGGGGAACGTAGTAATAATT 58.286 36.000 0.00 0.00 45.00 1.40
341 342 6.303903 ACTGTTGGGGAACGTAGTAATAAT 57.696 37.500 0.00 0.00 45.00 1.28
342 343 5.743636 ACTGTTGGGGAACGTAGTAATAA 57.256 39.130 0.00 0.00 45.00 1.40
343 344 6.849085 TTACTGTTGGGGAACGTAGTAATA 57.151 37.500 0.00 0.00 45.00 0.98
344 345 5.743636 TTACTGTTGGGGAACGTAGTAAT 57.256 39.130 0.00 0.00 45.00 1.89
345 346 5.743636 ATTACTGTTGGGGAACGTAGTAA 57.256 39.130 5.93 5.93 45.00 2.24
346 347 5.743636 AATTACTGTTGGGGAACGTAGTA 57.256 39.130 0.00 0.00 45.00 1.82
347 348 7.136703 AACAAATTACTGTTGGGGAACGTAGT 61.137 38.462 0.00 0.00 39.72 2.73
348 349 4.758165 ACAAATTACTGTTGGGGAACGTAG 59.242 41.667 0.00 0.00 0.00 3.51
349 350 4.716794 ACAAATTACTGTTGGGGAACGTA 58.283 39.130 0.00 0.00 0.00 3.57
350 351 3.558033 ACAAATTACTGTTGGGGAACGT 58.442 40.909 0.00 0.00 0.00 3.99
351 352 4.542735 GAACAAATTACTGTTGGGGAACG 58.457 43.478 0.25 0.00 39.63 3.95
352 353 4.037089 ACGAACAAATTACTGTTGGGGAAC 59.963 41.667 9.08 0.00 39.63 3.62
353 354 4.208746 ACGAACAAATTACTGTTGGGGAA 58.791 39.130 9.08 0.00 39.63 3.97
354 355 3.816523 GACGAACAAATTACTGTTGGGGA 59.183 43.478 9.08 0.00 39.63 4.81
355 356 3.057806 GGACGAACAAATTACTGTTGGGG 60.058 47.826 9.08 0.00 39.63 4.96
356 357 3.566322 TGGACGAACAAATTACTGTTGGG 59.434 43.478 9.08 1.42 39.63 4.12
357 358 4.822036 TGGACGAACAAATTACTGTTGG 57.178 40.909 0.25 2.42 39.63 3.77
358 359 5.079406 CGATGGACGAACAAATTACTGTTG 58.921 41.667 0.25 0.00 45.77 3.33
359 360 4.753107 ACGATGGACGAACAAATTACTGTT 59.247 37.500 0.00 0.00 45.77 3.16
360 361 4.312443 ACGATGGACGAACAAATTACTGT 58.688 39.130 0.00 0.00 45.77 3.55
361 362 4.921470 ACGATGGACGAACAAATTACTG 57.079 40.909 0.00 0.00 45.77 2.74
362 363 6.334989 TCATACGATGGACGAACAAATTACT 58.665 36.000 0.00 0.00 45.77 2.24
363 364 6.578020 TCATACGATGGACGAACAAATTAC 57.422 37.500 0.00 0.00 45.77 1.89
364 365 8.921670 CATATCATACGATGGACGAACAAATTA 58.078 33.333 0.00 0.00 45.77 1.40
365 366 7.441157 ACATATCATACGATGGACGAACAAATT 59.559 33.333 0.00 0.00 45.77 1.82
366 367 6.929049 ACATATCATACGATGGACGAACAAAT 59.071 34.615 0.00 0.00 45.77 2.32
367 368 6.200097 CACATATCATACGATGGACGAACAAA 59.800 38.462 0.00 0.00 45.77 2.83
368 369 5.689961 CACATATCATACGATGGACGAACAA 59.310 40.000 0.00 0.00 45.77 2.83
369 370 5.219633 CACATATCATACGATGGACGAACA 58.780 41.667 0.00 0.00 45.77 3.18
370 371 5.220381 ACACATATCATACGATGGACGAAC 58.780 41.667 0.00 0.00 45.77 3.95
371 372 5.447624 ACACATATCATACGATGGACGAA 57.552 39.130 0.00 0.00 45.77 3.85
372 373 5.447624 AACACATATCATACGATGGACGA 57.552 39.130 0.00 0.00 45.77 4.20
374 375 5.458015 TCGAACACATATCATACGATGGAC 58.542 41.667 0.00 0.00 32.73 4.02
375 376 5.699097 TCGAACACATATCATACGATGGA 57.301 39.130 0.00 0.00 32.73 3.41
376 377 7.472543 TCTATCGAACACATATCATACGATGG 58.527 38.462 0.00 0.00 38.92 3.51
377 378 8.951969 CATCTATCGAACACATATCATACGATG 58.048 37.037 0.00 0.00 38.92 3.84
378 379 7.645735 GCATCTATCGAACACATATCATACGAT 59.354 37.037 0.00 0.00 40.89 3.73
379 380 6.967199 GCATCTATCGAACACATATCATACGA 59.033 38.462 0.00 0.00 0.00 3.43
380 381 6.747280 TGCATCTATCGAACACATATCATACG 59.253 38.462 0.00 0.00 0.00 3.06
381 382 8.538039 CATGCATCTATCGAACACATATCATAC 58.462 37.037 0.00 0.00 0.00 2.39
382 383 7.223387 GCATGCATCTATCGAACACATATCATA 59.777 37.037 14.21 0.00 0.00 2.15
383 384 6.036844 GCATGCATCTATCGAACACATATCAT 59.963 38.462 14.21 0.00 0.00 2.45
384 385 5.349543 GCATGCATCTATCGAACACATATCA 59.650 40.000 14.21 0.00 0.00 2.15
385 386 5.579904 AGCATGCATCTATCGAACACATATC 59.420 40.000 21.98 0.00 0.00 1.63
386 387 5.350640 CAGCATGCATCTATCGAACACATAT 59.649 40.000 21.98 0.00 0.00 1.78
387 388 4.687483 CAGCATGCATCTATCGAACACATA 59.313 41.667 21.98 0.00 0.00 2.29
388 389 3.497262 CAGCATGCATCTATCGAACACAT 59.503 43.478 21.98 0.00 0.00 3.21
389 390 2.867975 CAGCATGCATCTATCGAACACA 59.132 45.455 21.98 0.00 0.00 3.72
390 391 2.222678 CCAGCATGCATCTATCGAACAC 59.777 50.000 21.98 0.00 31.97 3.32
391 392 2.102925 TCCAGCATGCATCTATCGAACA 59.897 45.455 21.98 0.00 31.97 3.18
392 393 2.759191 TCCAGCATGCATCTATCGAAC 58.241 47.619 21.98 0.00 31.97 3.95
393 394 3.690475 ATCCAGCATGCATCTATCGAA 57.310 42.857 21.98 0.00 31.97 3.71
394 395 4.382345 CTATCCAGCATGCATCTATCGA 57.618 45.455 21.98 4.24 31.97 3.59
428 429 9.233649 CCGACCTTCATATACTTCTATTACTCT 57.766 37.037 0.00 0.00 0.00 3.24
447 448 2.140839 ATTAGACCGACTCCGACCTT 57.859 50.000 0.00 0.00 38.22 3.50
694 748 1.147817 AGGGCAAGAGGGTTGTCAATT 59.852 47.619 0.00 0.00 0.00 2.32
746 800 4.773323 ACAAACTTCCTTAAGCAGCATC 57.227 40.909 0.00 0.00 36.05 3.91
757 811 7.229506 CCAGTAGAAGAATCAAACAAACTTCCT 59.770 37.037 0.00 0.00 38.04 3.36
760 814 7.881775 ACCAGTAGAAGAATCAAACAAACTT 57.118 32.000 0.00 0.00 0.00 2.66
780 837 8.523464 CAGCGAAAATTAAAATTATCGAACCAG 58.477 33.333 0.00 0.00 0.00 4.00
823 881 8.865244 AGAGGAGGGGTAAAACAGTATAATAA 57.135 34.615 0.00 0.00 0.00 1.40
834 892 1.282382 CCCGAAGAGGAGGGGTAAAA 58.718 55.000 0.00 0.00 45.00 1.52
948 1016 7.561237 TTTACGCAAATAAGCTTTCACATTC 57.439 32.000 3.20 0.00 0.00 2.67
983 1051 6.683974 AATACATCTTGGTTTGAATCCTCG 57.316 37.500 0.00 0.00 0.00 4.63
1015 1879 3.907894 TTGCACATAAGACCCGAAAAC 57.092 42.857 0.00 0.00 0.00 2.43
1219 2083 2.398588 TGAACACTCACCTGAGGTCTT 58.601 47.619 0.00 0.00 46.13 3.01
1294 2158 2.306847 GATGCCCCAACATTACGGATT 58.693 47.619 0.00 0.00 0.00 3.01
1295 2159 1.478654 GGATGCCCCAACATTACGGAT 60.479 52.381 0.00 0.00 34.14 4.18
1296 2160 0.106918 GGATGCCCCAACATTACGGA 60.107 55.000 0.00 0.00 34.14 4.69
1297 2161 2.414750 GGATGCCCCAACATTACGG 58.585 57.895 0.00 0.00 34.14 4.02
1523 2388 9.411189 CTATTTTAGAACAGAGGGAGTAGTACT 57.589 37.037 1.37 1.37 0.00 2.73
1524 2389 9.406113 TCTATTTTAGAACAGAGGGAGTAGTAC 57.594 37.037 0.00 0.00 0.00 2.73
1526 2391 8.919145 CATCTATTTTAGAACAGAGGGAGTAGT 58.081 37.037 0.00 0.00 38.50 2.73
1527 2392 9.137459 TCATCTATTTTAGAACAGAGGGAGTAG 57.863 37.037 0.00 0.00 38.50 2.57
1528 2393 8.915036 GTCATCTATTTTAGAACAGAGGGAGTA 58.085 37.037 0.00 0.00 38.50 2.59
1529 2394 7.147637 GGTCATCTATTTTAGAACAGAGGGAGT 60.148 40.741 0.00 0.00 38.50 3.85
1530 2395 7.213678 GGTCATCTATTTTAGAACAGAGGGAG 58.786 42.308 0.00 0.00 38.50 4.30
1531 2396 6.099845 GGGTCATCTATTTTAGAACAGAGGGA 59.900 42.308 0.00 0.00 38.50 4.20
1532 2397 6.126768 TGGGTCATCTATTTTAGAACAGAGGG 60.127 42.308 0.00 0.00 38.50 4.30
1533 2398 6.889198 TGGGTCATCTATTTTAGAACAGAGG 58.111 40.000 0.00 0.00 38.50 3.69
1534 2399 8.043710 AGTTGGGTCATCTATTTTAGAACAGAG 58.956 37.037 0.00 0.00 38.50 3.35
1535 2400 7.918076 AGTTGGGTCATCTATTTTAGAACAGA 58.082 34.615 0.00 0.00 38.50 3.41
1536 2401 8.567285 AAGTTGGGTCATCTATTTTAGAACAG 57.433 34.615 0.00 0.00 38.50 3.16
1537 2402 8.792633 CAAAGTTGGGTCATCTATTTTAGAACA 58.207 33.333 0.00 0.00 38.50 3.18
1538 2403 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
1539 2404 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
1540 2405 9.444600 GTACAAAGTTGGGTCATCTATTTTAGA 57.555 33.333 0.00 0.00 39.50 2.10
1541 2406 9.449719 AGTACAAAGTTGGGTCATCTATTTTAG 57.550 33.333 0.00 0.00 0.00 1.85
1543 2408 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1544 2409 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
1545 2410 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
1546 2411 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
1547 2412 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
1548 2413 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
1549 2414 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
1550 2415 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
1551 2416 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
1574 2439 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1575 2440 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1576 2441 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1577 2442 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1578 2443 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1579 2444 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1580 2445 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1581 2446 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1582 2447 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1583 2448 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1584 2449 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1585 2450 5.294552 CCTTCCGTTCCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
1586 2451 5.045869 TCCTTCCGTTCCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
1587 2452 5.183228 TCCTTCCGTTCCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
1588 2453 5.045869 ACTCCTTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1589 2454 5.186198 ACTCCTTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
1590 2455 5.437191 ACTCCTTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
1591 2456 4.903045 ACTCCTTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1592 2457 5.484715 TGTACTCCTTCCGTTCCAAAATAG 58.515 41.667 0.00 0.00 0.00 1.73
1593 2458 5.486735 TGTACTCCTTCCGTTCCAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
1594 2459 4.360951 TGTACTCCTTCCGTTCCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
1595 2460 3.842007 TGTACTCCTTCCGTTCCAAAA 57.158 42.857 0.00 0.00 0.00 2.44
1596 2461 3.670625 CATGTACTCCTTCCGTTCCAAA 58.329 45.455 0.00 0.00 0.00 3.28
1597 2462 2.614481 GCATGTACTCCTTCCGTTCCAA 60.614 50.000 0.00 0.00 0.00 3.53
1598 2463 1.066430 GCATGTACTCCTTCCGTTCCA 60.066 52.381 0.00 0.00 0.00 3.53
1599 2464 1.653151 GCATGTACTCCTTCCGTTCC 58.347 55.000 0.00 0.00 0.00 3.62
1600 2465 1.066430 TGGCATGTACTCCTTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
1601 2466 0.981183 TGGCATGTACTCCTTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
1602 2467 1.204146 ATGGCATGTACTCCTTCCGT 58.796 50.000 0.00 0.00 0.00 4.69
1603 2468 2.332063 AATGGCATGTACTCCTTCCG 57.668 50.000 0.00 0.00 0.00 4.30
1604 2469 5.827797 TCATTAAATGGCATGTACTCCTTCC 59.172 40.000 0.00 0.00 0.00 3.46
1605 2470 6.942532 TCATTAAATGGCATGTACTCCTTC 57.057 37.500 0.00 0.00 0.00 3.46
1606 2471 9.236006 GATATCATTAAATGGCATGTACTCCTT 57.764 33.333 0.00 0.00 0.00 3.36
1607 2472 8.609483 AGATATCATTAAATGGCATGTACTCCT 58.391 33.333 0.00 0.00 0.00 3.69
1608 2473 8.671921 CAGATATCATTAAATGGCATGTACTCC 58.328 37.037 0.00 0.00 0.00 3.85
1609 2474 9.440773 TCAGATATCATTAAATGGCATGTACTC 57.559 33.333 0.00 0.00 0.00 2.59
1610 2475 9.224267 GTCAGATATCATTAAATGGCATGTACT 57.776 33.333 0.00 0.00 0.00 2.73
1611 2476 9.002600 TGTCAGATATCATTAAATGGCATGTAC 57.997 33.333 0.00 0.00 0.00 2.90
1746 2611 3.385755 ACTTGATAAGGAAATGGCCATGC 59.614 43.478 21.63 14.67 0.00 4.06
1752 2617 8.206867 TCAGATGTAGACTTGATAAGGAAATGG 58.793 37.037 0.00 0.00 0.00 3.16
1831 2696 4.489737 AGGTCCGGTCCATCTTGATTATA 58.510 43.478 20.28 0.00 0.00 0.98
1970 2837 5.348724 ACGTTATAGCTGAGACAACAACATG 59.651 40.000 0.00 0.00 0.00 3.21
1977 2844 7.011763 AGTCGTATAACGTTATAGCTGAGACAA 59.988 37.037 24.74 2.52 43.14 3.18
2138 3005 0.321564 TGGCTATCGCAAACAGCAGT 60.322 50.000 0.00 0.00 46.13 4.40
2376 3245 1.822990 CTACGCCTCCCTGAAGTTGTA 59.177 52.381 0.00 0.00 0.00 2.41
2430 3300 1.178534 TTGGGGCGCTTTTGGAGAAG 61.179 55.000 7.64 0.00 0.00 2.85
2508 3380 0.388520 GCGCCATGTCTTTGGTTTCC 60.389 55.000 0.00 0.00 39.11 3.13
2610 3484 6.051717 AGAATTCGTCTTCCAAGGATACATG 58.948 40.000 0.00 0.00 32.16 3.21
2621 3495 3.126000 CAGGCTGAAAGAATTCGTCTTCC 59.874 47.826 9.42 11.67 46.36 3.46
2622 3496 3.748568 ACAGGCTGAAAGAATTCGTCTTC 59.251 43.478 23.66 10.73 46.36 2.87
2691 3567 5.163663 TGGACATCACAAAAGAAACTGTCAC 60.164 40.000 0.00 0.00 34.63 3.67
2715 3591 6.105397 ACAAACAAGAGCATGATGGAAAAT 57.895 33.333 0.00 0.00 0.00 1.82
2806 3683 4.404394 TCCAGAGAGGCAAACATATTACGA 59.596 41.667 0.00 0.00 37.29 3.43
3240 4118 4.146961 CACAATCAGTTTCAAATGTGCGTC 59.853 41.667 0.00 0.00 32.76 5.19
3361 4240 9.698617 GTTTATACGATTCAGTTTGTTATGGTC 57.301 33.333 0.00 0.00 0.00 4.02
3399 4278 2.669434 CACCACAATGCTTGCAATTAGC 59.331 45.455 0.00 0.00 45.96 3.09
3484 4363 6.922957 TGTAATTTCCTTGTCTTTGCAATGAC 59.077 34.615 29.20 29.20 34.65 3.06
3686 4565 1.119684 ACAGGTAGCACACACACAGA 58.880 50.000 0.00 0.00 0.00 3.41
3687 4566 1.202521 TCACAGGTAGCACACACACAG 60.203 52.381 0.00 0.00 0.00 3.66
3719 4686 4.807304 AGTGAAGAACGAAAAGTTTAGCGA 59.193 37.500 15.14 0.00 44.35 4.93
3806 4775 8.802267 CATAATTCAGGGGAAACAACTTAGAAA 58.198 33.333 0.00 0.00 36.43 2.52
3895 5136 8.710835 TTTAAAATTTTCAAGTCCGAAAGCTT 57.289 26.923 6.72 0.00 36.31 3.74
3950 5191 5.501736 GCAAAGGAACCGAAAACAAATTCAC 60.502 40.000 0.00 0.00 0.00 3.18
3964 5205 1.981256 TGAGAAGTGGCAAAGGAACC 58.019 50.000 0.00 0.00 0.00 3.62
4039 5280 7.770897 TGGTGCATTTACAAACTTTTAACCAAT 59.229 29.630 0.00 0.00 30.25 3.16
4040 5281 7.103641 TGGTGCATTTACAAACTTTTAACCAA 58.896 30.769 0.00 0.00 30.25 3.67
4058 5299 6.040209 TGATATTTTTCAAGCTTGGTGCAT 57.960 33.333 25.73 14.99 45.94 3.96
4059 5300 5.465532 TGATATTTTTCAAGCTTGGTGCA 57.534 34.783 25.73 8.97 45.94 4.57
4106 5347 7.720074 TGAGAGACTTCTACTGTGTTCTTCTTA 59.280 37.037 0.00 0.00 32.53 2.10
4208 5452 1.480954 ACACTTGTGACTCGACACCTT 59.519 47.619 7.83 0.00 39.69 3.50
4209 5453 1.112113 ACACTTGTGACTCGACACCT 58.888 50.000 7.83 0.00 39.69 4.00
4210 5454 2.787601 TACACTTGTGACTCGACACC 57.212 50.000 7.83 0.00 39.69 4.16
4240 5484 2.092968 TGGACAGTCCTTCCACATATGC 60.093 50.000 20.82 0.00 38.28 3.14
4272 5516 2.386661 AGCTGCGTGTTAGCACTTAT 57.613 45.000 8.15 0.00 42.92 1.73
4352 5605 3.188460 CCATGTTTCACCTTTAGTCCACG 59.812 47.826 0.00 0.00 0.00 4.94
4353 5606 4.394729 TCCATGTTTCACCTTTAGTCCAC 58.605 43.478 0.00 0.00 0.00 4.02
4354 5607 4.715534 TCCATGTTTCACCTTTAGTCCA 57.284 40.909 0.00 0.00 0.00 4.02
4355 5608 5.010282 ACATCCATGTTTCACCTTTAGTCC 58.990 41.667 0.00 0.00 37.90 3.85
4369 5622 3.377253 AGCTGAATCCAACATCCATGT 57.623 42.857 0.00 0.00 44.20 3.21
4371 5624 3.117776 TGCTAGCTGAATCCAACATCCAT 60.118 43.478 17.23 0.00 0.00 3.41
4501 5754 6.255453 CCGTCAAACAACTTGATTTTGATGTT 59.745 34.615 17.51 0.00 45.74 2.71
4624 5877 3.033909 TGATTCTCATGGTCCTCGTCAT 58.966 45.455 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.