Multiple sequence alignment - TraesCS5D01G158700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G158700 chr5D 100.000 1618 0 0 1 1618 246765249 246766866 0.000000e+00 2988.0
1 TraesCS5D01G158700 chr5D 100.000 698 0 0 1912 2609 246767160 246767857 0.000000e+00 1290.0
2 TraesCS5D01G158700 chr5B 92.917 833 35 11 793 1612 281645054 281644233 0.000000e+00 1190.0
3 TraesCS5D01G158700 chr5B 90.761 736 44 12 1 717 281645804 281645074 0.000000e+00 961.0
4 TraesCS5D01G158700 chr5B 87.009 331 21 8 1912 2234 281644187 281643871 1.150000e-93 353.0
5 TraesCS5D01G158700 chr5A 86.611 956 64 26 1 934 330962939 330963852 0.000000e+00 998.0
6 TraesCS5D01G158700 chr5A 91.246 674 34 11 941 1609 330963889 330964542 0.000000e+00 894.0
7 TraesCS5D01G158700 chr7D 79.303 459 63 20 1143 1600 611442146 611441719 2.540000e-75 292.0
8 TraesCS5D01G158700 chr7D 86.441 59 6 1 332 388 264489632 264489574 2.170000e-06 63.9
9 TraesCS5D01G158700 chr7A 77.273 462 68 21 1141 1600 701462576 701462150 1.210000e-58 237.0
10 TraesCS5D01G158700 chr4D 77.007 461 76 22 1143 1600 117663028 117662595 1.210000e-58 237.0
11 TraesCS5D01G158700 chr4D 84.270 178 28 0 1143 1320 117706350 117706173 9.600000e-40 174.0
12 TraesCS5D01G158700 chr4B 76.724 464 72 20 1143 1600 179751167 179751600 2.610000e-55 226.0
13 TraesCS5D01G158700 chr7B 76.129 465 75 19 1143 1599 700630362 700629926 7.320000e-51 211.0
14 TraesCS5D01G158700 chr7B 89.474 57 6 0 332 388 244756653 244756597 3.600000e-09 73.1
15 TraesCS5D01G158700 chr4A 86.628 172 23 0 1143 1314 456336334 456336505 9.530000e-45 191.0
16 TraesCS5D01G158700 chr4A 86.047 172 24 0 1143 1314 457568322 457568493 4.430000e-43 185.0
17 TraesCS5D01G158700 chr2B 73.056 360 69 22 41 388 178528448 178528105 4.590000e-18 102.0
18 TraesCS5D01G158700 chr2B 72.851 221 49 8 174 386 125828294 125828511 6.030000e-07 65.8
19 TraesCS5D01G158700 chr6D 86.567 67 7 2 1529 1594 384533975 384533910 3.600000e-09 73.1
20 TraesCS5D01G158700 chr6A 86.567 67 7 2 1529 1594 529048056 529047991 3.600000e-09 73.1
21 TraesCS5D01G158700 chr1B 87.302 63 8 0 332 394 501362075 501362013 3.600000e-09 73.1
22 TraesCS5D01G158700 chr6B 81.818 88 10 4 1510 1594 574735919 574735835 4.660000e-08 69.4
23 TraesCS5D01G158700 chr6B 87.273 55 7 0 334 388 414715920 414715974 2.170000e-06 63.9
24 TraesCS5D01G158700 chr3D 84.615 65 9 1 332 395 125491334 125491270 2.170000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G158700 chr5D 246765249 246767857 2608 False 2139.000000 2988 100.0000 1 2609 2 chr5D.!!$F1 2608
1 TraesCS5D01G158700 chr5B 281643871 281645804 1933 True 834.666667 1190 90.2290 1 2234 3 chr5B.!!$R1 2233
2 TraesCS5D01G158700 chr5A 330962939 330964542 1603 False 946.000000 998 88.9285 1 1609 2 chr5A.!!$F1 1608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 892 0.723981 GACGCAGAAAGCTGGTGATC 59.276 55.0 0.0 0.0 42.53 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2542 2618 0.179936 GCTGGGTTCTCCTCCATGAG 59.82 60.0 0.0 0.0 36.2 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 80 4.298103 AGTCTAGAACAACCGAGGAGTA 57.702 45.455 0.00 0.00 0.00 2.59
76 82 3.755378 GTCTAGAACAACCGAGGAGTACA 59.245 47.826 0.00 0.00 0.00 2.90
181 189 5.590259 GGCTGAGAACTTAAGCATGGAATAA 59.410 40.000 1.29 0.00 38.73 1.40
196 204 9.638176 AGCATGGAATAATCTAGAACAAAGAAT 57.362 29.630 0.00 0.00 0.00 2.40
359 371 7.813148 GCCTCATCCAATGATCAATATTCAAAG 59.187 37.037 0.00 0.00 38.85 2.77
410 422 8.608844 AGAAGTGTTACCTTGAAATAGAACTG 57.391 34.615 0.00 0.00 0.00 3.16
453 465 6.428083 TGAAAACTACTAACCACATCCTCA 57.572 37.500 0.00 0.00 0.00 3.86
491 503 8.915871 AATAATGATTTTTGACACGATCTTGG 57.084 30.769 4.03 0.00 0.00 3.61
549 561 6.636044 ACGAGAGACTCTTAACAAAAACTACG 59.364 38.462 6.40 3.33 0.00 3.51
550 562 6.854892 CGAGAGACTCTTAACAAAAACTACGA 59.145 38.462 6.40 0.00 0.00 3.43
558 570 4.685824 AACAAAAACTACGAAAATGCGC 57.314 36.364 0.00 0.00 33.86 6.09
561 573 1.149987 AAACTACGAAAATGCGCGGA 58.850 45.000 8.83 5.00 33.86 5.54
592 604 7.147976 CCTCAAGTAAAGACCCAAAAAGATTG 58.852 38.462 0.00 0.00 0.00 2.67
593 605 7.201911 CCTCAAGTAAAGACCCAAAAAGATTGT 60.202 37.037 0.00 0.00 0.00 2.71
600 612 4.342092 AGACCCAAAAAGATTGTTGTGAGG 59.658 41.667 0.00 0.00 0.00 3.86
617 629 4.202514 TGTGAGGTTACACAATCCAATGGA 60.203 41.667 3.67 3.67 45.81 3.41
677 691 9.565090 TCTTGAAAAATCCAGATCTATGGTATG 57.435 33.333 0.00 0.00 41.43 2.39
684 698 4.716784 TCCAGATCTATGGTATGGTATGGC 59.283 45.833 0.00 0.00 41.43 4.40
686 700 5.396101 CCAGATCTATGGTATGGTATGGCAG 60.396 48.000 0.00 0.00 35.47 4.85
732 751 5.309638 TGTTTGACGTGAAATATTCCCTCA 58.690 37.500 2.88 0.00 0.00 3.86
749 768 4.761739 TCCCTCAAAGTCAAGTAATGCAAG 59.238 41.667 0.00 0.00 0.00 4.01
785 804 1.993370 CTAAAGCTTAGTTGCGACGCT 59.007 47.619 22.08 3.01 38.13 5.07
786 805 1.226746 AAAGCTTAGTTGCGACGCTT 58.773 45.000 22.08 10.83 42.19 4.68
787 806 2.074547 AAGCTTAGTTGCGACGCTTA 57.925 45.000 22.08 6.25 38.98 3.09
788 807 1.347320 AGCTTAGTTGCGACGCTTAC 58.653 50.000 22.08 17.96 38.13 2.34
789 808 1.067776 AGCTTAGTTGCGACGCTTACT 60.068 47.619 24.23 24.23 38.13 2.24
790 809 2.163010 AGCTTAGTTGCGACGCTTACTA 59.837 45.455 22.08 22.44 38.13 1.82
791 810 2.919229 GCTTAGTTGCGACGCTTACTAA 59.081 45.455 29.06 29.06 35.65 2.24
868 892 0.723981 GACGCAGAAAGCTGGTGATC 59.276 55.000 0.00 0.00 42.53 2.92
870 894 1.339438 ACGCAGAAAGCTGGTGATCAT 60.339 47.619 0.00 0.00 42.53 2.45
871 895 2.093500 ACGCAGAAAGCTGGTGATCATA 60.093 45.455 0.00 0.00 42.53 2.15
872 896 2.938451 CGCAGAAAGCTGGTGATCATAA 59.062 45.455 0.00 0.00 42.53 1.90
873 897 3.242543 CGCAGAAAGCTGGTGATCATAAC 60.243 47.826 0.00 0.00 42.53 1.89
874 898 3.065925 GCAGAAAGCTGGTGATCATAACC 59.934 47.826 0.00 0.00 42.53 2.85
875 899 3.629398 CAGAAAGCTGGTGATCATAACCC 59.371 47.826 0.00 0.00 38.51 4.11
876 900 3.525199 AGAAAGCTGGTGATCATAACCCT 59.475 43.478 0.00 0.00 36.83 4.34
877 901 4.721776 AGAAAGCTGGTGATCATAACCCTA 59.278 41.667 0.00 0.00 36.83 3.53
878 902 4.423625 AAGCTGGTGATCATAACCCTAC 57.576 45.455 0.00 0.00 36.83 3.18
879 903 2.365617 AGCTGGTGATCATAACCCTACG 59.634 50.000 0.00 0.00 36.83 3.51
954 1014 1.430707 CCGGCCATTTTACCCGTACG 61.431 60.000 8.69 8.69 40.38 3.67
1033 1093 3.243168 CCATCAAGGCAATAATCCACGTG 60.243 47.826 9.08 9.08 0.00 4.49
1036 1096 3.055458 TCAAGGCAATAATCCACGTGAGA 60.055 43.478 19.30 13.16 0.00 3.27
1040 1100 3.548818 GGCAATAATCCACGTGAGATTGC 60.549 47.826 28.89 28.89 46.09 3.56
1041 1101 3.065233 GCAATAATCCACGTGAGATTGCA 59.935 43.478 30.26 19.25 46.09 4.08
1046 1106 0.110056 CCACGTGAGATTGCAAGCAC 60.110 55.000 19.30 16.77 0.00 4.40
1058 1118 0.102844 GCAAGCACTTCACCAGCAAA 59.897 50.000 0.00 0.00 0.00 3.68
1060 1120 2.195922 CAAGCACTTCACCAGCAAAAC 58.804 47.619 0.00 0.00 0.00 2.43
1063 1123 1.826327 CACTTCACCAGCAAAACACG 58.174 50.000 0.00 0.00 0.00 4.49
1064 1124 1.132262 CACTTCACCAGCAAAACACGT 59.868 47.619 0.00 0.00 0.00 4.49
1065 1125 2.353269 CACTTCACCAGCAAAACACGTA 59.647 45.455 0.00 0.00 0.00 3.57
1066 1126 2.353579 ACTTCACCAGCAAAACACGTAC 59.646 45.455 0.00 0.00 0.00 3.67
1106 1169 0.797249 GCAGCAAGCAAGATTGAGCG 60.797 55.000 1.74 0.00 44.79 5.03
1374 1440 3.878519 GGAGGCGACGACGAGGAG 61.879 72.222 12.29 0.00 42.66 3.69
1430 1496 2.654404 GATGTACGCGACGGGAGC 60.654 66.667 15.93 10.69 0.00 4.70
1609 1678 5.981315 GTCATGATGATGGCCAATTTGTAAG 59.019 40.000 10.96 0.00 0.00 2.34
1612 1681 2.465813 TGATGGCCAATTTGTAAGGGG 58.534 47.619 10.96 0.00 0.00 4.79
1613 1682 2.225496 TGATGGCCAATTTGTAAGGGGT 60.225 45.455 10.96 0.00 0.00 4.95
1616 1685 1.639722 GCCAATTTGTAAGGGGTGGT 58.360 50.000 0.00 0.00 0.00 4.16
1959 2030 5.114785 TGGACGTTTCAATTGTATGTTGG 57.885 39.130 5.13 0.00 0.00 3.77
2035 2106 7.606858 TTGATGATGATGAAGAGAAGTTGAC 57.393 36.000 0.00 0.00 0.00 3.18
2057 2128 4.142988 ACGGTGTCATGTTGTAAATAAGCG 60.143 41.667 0.00 0.00 0.00 4.68
2086 2162 6.272558 ACCTCTTCCTATTTGACCTGTAGTTT 59.727 38.462 0.00 0.00 0.00 2.66
2136 2212 6.987403 TTTTAAGCAAATGGTAAACCCTCT 57.013 33.333 0.00 0.00 34.29 3.69
2146 2222 5.570205 TGGTAAACCCTCTGTTGACATTA 57.430 39.130 0.00 0.00 39.76 1.90
2148 2224 5.943416 TGGTAAACCCTCTGTTGACATTATG 59.057 40.000 0.00 0.00 39.76 1.90
2152 2228 6.976934 AACCCTCTGTTGACATTATGTTTT 57.023 33.333 0.00 0.00 35.31 2.43
2153 2229 8.472007 AAACCCTCTGTTGACATTATGTTTTA 57.528 30.769 0.00 0.00 37.23 1.52
2154 2230 7.448748 ACCCTCTGTTGACATTATGTTTTAC 57.551 36.000 0.00 0.00 0.00 2.01
2156 2232 7.669722 ACCCTCTGTTGACATTATGTTTTACAT 59.330 33.333 0.00 0.00 42.35 2.29
2179 2255 8.466798 ACATAAATAATAAAGGATATTGGCGCC 58.533 33.333 22.73 22.73 0.00 6.53
2180 2256 6.909550 AAATAATAAAGGATATTGGCGCCA 57.090 33.333 29.03 29.03 0.00 5.69
2181 2257 5.897377 ATAATAAAGGATATTGGCGCCAC 57.103 39.130 32.95 18.35 0.00 5.01
2182 2258 2.719531 TAAAGGATATTGGCGCCACA 57.280 45.000 32.95 21.33 0.00 4.17
2183 2259 2.071778 AAAGGATATTGGCGCCACAT 57.928 45.000 32.95 25.38 0.00 3.21
2184 2260 1.321474 AAGGATATTGGCGCCACATG 58.679 50.000 32.95 0.00 0.00 3.21
2185 2261 0.183492 AGGATATTGGCGCCACATGT 59.817 50.000 32.95 22.65 0.00 3.21
2186 2262 1.032014 GGATATTGGCGCCACATGTT 58.968 50.000 32.95 16.62 0.00 2.71
2187 2263 1.269206 GGATATTGGCGCCACATGTTG 60.269 52.381 32.95 0.00 0.00 3.33
2197 2273 0.108520 CCACATGTTGGCCTTCATGC 60.109 55.000 27.81 6.32 43.34 4.06
2217 2293 1.545706 GGCGACCCACTTCCTTCTCT 61.546 60.000 0.00 0.00 0.00 3.10
2227 2303 3.688673 CACTTCCTTCTCTCCTTTGCATC 59.311 47.826 0.00 0.00 0.00 3.91
2228 2304 3.328931 ACTTCCTTCTCTCCTTTGCATCA 59.671 43.478 0.00 0.00 0.00 3.07
2230 2306 3.679389 TCCTTCTCTCCTTTGCATCAAC 58.321 45.455 0.00 0.00 0.00 3.18
2231 2307 3.072915 TCCTTCTCTCCTTTGCATCAACA 59.927 43.478 0.00 0.00 0.00 3.33
2233 2309 4.461781 CCTTCTCTCCTTTGCATCAACAAT 59.538 41.667 0.00 0.00 0.00 2.71
2234 2310 5.381174 TTCTCTCCTTTGCATCAACAATG 57.619 39.130 0.00 0.00 38.50 2.82
2235 2311 4.654915 TCTCTCCTTTGCATCAACAATGA 58.345 39.130 0.00 0.00 37.59 2.57
2237 2313 5.713389 TCTCTCCTTTGCATCAACAATGATT 59.287 36.000 0.00 0.00 43.89 2.57
2238 2314 6.209986 TCTCTCCTTTGCATCAACAATGATTT 59.790 34.615 0.00 0.00 43.89 2.17
2239 2315 7.394077 TCTCTCCTTTGCATCAACAATGATTTA 59.606 33.333 0.00 0.00 43.89 1.40
2240 2316 7.894708 TCTCCTTTGCATCAACAATGATTTAA 58.105 30.769 0.00 0.00 43.89 1.52
2241 2317 8.533657 TCTCCTTTGCATCAACAATGATTTAAT 58.466 29.630 0.00 0.00 43.89 1.40
2242 2318 8.481974 TCCTTTGCATCAACAATGATTTAATG 57.518 30.769 0.00 0.00 43.89 1.90
2243 2319 8.095792 TCCTTTGCATCAACAATGATTTAATGT 58.904 29.630 0.00 0.00 43.89 2.71
2244 2320 8.723311 CCTTTGCATCAACAATGATTTAATGTT 58.277 29.630 0.00 0.00 43.89 2.71
2246 2322 9.880064 TTTGCATCAACAATGATTTAATGTTTG 57.120 25.926 0.00 0.00 43.89 2.93
2247 2323 8.828688 TGCATCAACAATGATTTAATGTTTGA 57.171 26.923 0.00 0.00 43.89 2.69
2248 2324 9.269453 TGCATCAACAATGATTTAATGTTTGAA 57.731 25.926 0.00 0.00 43.89 2.69
2288 2364 8.868522 TCTCTCAAACATTTCATCATTACCTT 57.131 30.769 0.00 0.00 0.00 3.50
2289 2365 8.950210 TCTCTCAAACATTTCATCATTACCTTC 58.050 33.333 0.00 0.00 0.00 3.46
2290 2366 8.634335 TCTCAAACATTTCATCATTACCTTCA 57.366 30.769 0.00 0.00 0.00 3.02
2291 2367 9.246670 TCTCAAACATTTCATCATTACCTTCAT 57.753 29.630 0.00 0.00 0.00 2.57
2292 2368 9.512435 CTCAAACATTTCATCATTACCTTCATC 57.488 33.333 0.00 0.00 0.00 2.92
2293 2369 9.022884 TCAAACATTTCATCATTACCTTCATCA 57.977 29.630 0.00 0.00 0.00 3.07
2294 2370 9.079833 CAAACATTTCATCATTACCTTCATCAC 57.920 33.333 0.00 0.00 0.00 3.06
2295 2371 7.019774 ACATTTCATCATTACCTTCATCACG 57.980 36.000 0.00 0.00 0.00 4.35
2296 2372 6.038603 ACATTTCATCATTACCTTCATCACGG 59.961 38.462 0.00 0.00 0.00 4.94
2297 2373 4.753516 TCATCATTACCTTCATCACGGT 57.246 40.909 0.00 0.00 37.31 4.83
2298 2374 4.441792 TCATCATTACCTTCATCACGGTG 58.558 43.478 0.56 0.56 34.76 4.94
2299 2375 4.161377 TCATCATTACCTTCATCACGGTGA 59.839 41.667 14.01 14.01 34.76 4.02
2300 2376 4.123497 TCATTACCTTCATCACGGTGAG 57.877 45.455 16.84 8.79 34.76 3.51
2301 2377 3.767131 TCATTACCTTCATCACGGTGAGA 59.233 43.478 16.84 10.86 34.76 3.27
2302 2378 4.405680 TCATTACCTTCATCACGGTGAGAT 59.594 41.667 16.84 0.00 34.76 2.75
2303 2379 2.969628 ACCTTCATCACGGTGAGATC 57.030 50.000 16.84 0.00 30.90 2.75
2304 2380 2.461695 ACCTTCATCACGGTGAGATCT 58.538 47.619 16.84 0.00 30.90 2.75
2305 2381 2.834549 ACCTTCATCACGGTGAGATCTT 59.165 45.455 16.84 0.00 30.90 2.40
2306 2382 3.261897 ACCTTCATCACGGTGAGATCTTT 59.738 43.478 16.84 0.00 30.90 2.52
2307 2383 3.620374 CCTTCATCACGGTGAGATCTTTG 59.380 47.826 16.84 8.71 0.00 2.77
2308 2384 4.498241 CTTCATCACGGTGAGATCTTTGA 58.502 43.478 16.84 10.88 0.00 2.69
2309 2385 4.535526 TCATCACGGTGAGATCTTTGAA 57.464 40.909 16.84 0.00 0.00 2.69
2310 2386 4.893608 TCATCACGGTGAGATCTTTGAAA 58.106 39.130 16.84 0.00 0.00 2.69
2311 2387 4.690748 TCATCACGGTGAGATCTTTGAAAC 59.309 41.667 16.84 0.00 0.00 2.78
2312 2388 4.336889 TCACGGTGAGATCTTTGAAACT 57.663 40.909 6.76 0.00 0.00 2.66
2313 2389 5.462530 TCACGGTGAGATCTTTGAAACTA 57.537 39.130 6.76 0.00 0.00 2.24
2314 2390 5.849510 TCACGGTGAGATCTTTGAAACTAA 58.150 37.500 6.76 0.00 0.00 2.24
2315 2391 6.285224 TCACGGTGAGATCTTTGAAACTAAA 58.715 36.000 6.76 0.00 0.00 1.85
2316 2392 6.934645 TCACGGTGAGATCTTTGAAACTAAAT 59.065 34.615 6.76 0.00 0.00 1.40
2317 2393 7.117812 TCACGGTGAGATCTTTGAAACTAAATC 59.882 37.037 6.76 0.00 0.00 2.17
2318 2394 6.371825 ACGGTGAGATCTTTGAAACTAAATCC 59.628 38.462 0.00 0.00 0.00 3.01
2319 2395 6.183360 CGGTGAGATCTTTGAAACTAAATCCC 60.183 42.308 0.00 0.00 0.00 3.85
2320 2396 6.183360 GGTGAGATCTTTGAAACTAAATCCCG 60.183 42.308 0.00 0.00 0.00 5.14
2321 2397 6.371825 GTGAGATCTTTGAAACTAAATCCCGT 59.628 38.462 0.00 0.00 0.00 5.28
2322 2398 6.371548 TGAGATCTTTGAAACTAAATCCCGTG 59.628 38.462 0.00 0.00 0.00 4.94
2323 2399 6.238648 AGATCTTTGAAACTAAATCCCGTGT 58.761 36.000 0.00 0.00 0.00 4.49
2324 2400 5.934935 TCTTTGAAACTAAATCCCGTGTC 57.065 39.130 0.00 0.00 0.00 3.67
2325 2401 5.369833 TCTTTGAAACTAAATCCCGTGTCA 58.630 37.500 0.00 0.00 0.00 3.58
2326 2402 5.823570 TCTTTGAAACTAAATCCCGTGTCAA 59.176 36.000 0.00 0.00 36.01 3.18
2327 2403 5.427036 TTGAAACTAAATCCCGTGTCAAC 57.573 39.130 0.00 0.00 33.63 3.18
2328 2404 4.452825 TGAAACTAAATCCCGTGTCAACA 58.547 39.130 0.00 0.00 0.00 3.33
2329 2405 5.067273 TGAAACTAAATCCCGTGTCAACAT 58.933 37.500 0.00 0.00 0.00 2.71
2330 2406 5.049060 TGAAACTAAATCCCGTGTCAACATG 60.049 40.000 0.00 0.00 0.00 3.21
2331 2407 4.280436 ACTAAATCCCGTGTCAACATGA 57.720 40.909 0.00 0.00 34.90 3.07
2332 2408 4.843728 ACTAAATCCCGTGTCAACATGAT 58.156 39.130 0.00 0.00 34.90 2.45
2333 2409 5.253330 ACTAAATCCCGTGTCAACATGATT 58.747 37.500 0.00 2.70 34.90 2.57
2334 2410 5.710099 ACTAAATCCCGTGTCAACATGATTT 59.290 36.000 0.00 15.88 36.43 2.17
2335 2411 4.439305 AATCCCGTGTCAACATGATTTG 57.561 40.909 0.00 0.00 34.90 2.32
2336 2412 3.133141 TCCCGTGTCAACATGATTTGA 57.867 42.857 0.00 0.00 34.90 2.69
2337 2413 3.684908 TCCCGTGTCAACATGATTTGAT 58.315 40.909 0.00 0.00 37.80 2.57
2338 2414 4.078537 TCCCGTGTCAACATGATTTGATT 58.921 39.130 0.00 0.00 37.80 2.57
2339 2415 5.249420 TCCCGTGTCAACATGATTTGATTA 58.751 37.500 0.00 0.00 37.80 1.75
2340 2416 5.123186 TCCCGTGTCAACATGATTTGATTAC 59.877 40.000 0.00 3.47 37.80 1.89
2341 2417 5.123820 CCCGTGTCAACATGATTTGATTACT 59.876 40.000 0.00 0.00 37.80 2.24
2342 2418 6.349280 CCCGTGTCAACATGATTTGATTACTT 60.349 38.462 0.00 0.00 37.80 2.24
2343 2419 7.083858 CCGTGTCAACATGATTTGATTACTTT 58.916 34.615 0.00 0.00 37.80 2.66
2344 2420 7.594758 CCGTGTCAACATGATTTGATTACTTTT 59.405 33.333 0.00 0.00 37.80 2.27
2345 2421 8.967218 CGTGTCAACATGATTTGATTACTTTTT 58.033 29.630 0.00 0.00 37.80 1.94
2363 2439 3.634568 TTTTGTCGGTATTTGCCACAG 57.365 42.857 0.00 0.00 0.00 3.66
2364 2440 2.264005 TTGTCGGTATTTGCCACAGT 57.736 45.000 0.00 0.00 0.00 3.55
2365 2441 3.404224 TTGTCGGTATTTGCCACAGTA 57.596 42.857 0.00 0.00 0.00 2.74
2366 2442 2.690786 TGTCGGTATTTGCCACAGTAC 58.309 47.619 0.00 0.00 0.00 2.73
2367 2443 2.300723 TGTCGGTATTTGCCACAGTACT 59.699 45.455 0.00 0.00 0.00 2.73
2368 2444 3.510753 TGTCGGTATTTGCCACAGTACTA 59.489 43.478 0.00 0.00 0.00 1.82
2369 2445 4.160814 TGTCGGTATTTGCCACAGTACTAT 59.839 41.667 0.00 0.00 0.00 2.12
2370 2446 4.506654 GTCGGTATTTGCCACAGTACTATG 59.493 45.833 0.00 0.00 0.00 2.23
2371 2447 4.403113 TCGGTATTTGCCACAGTACTATGA 59.597 41.667 1.76 0.00 0.00 2.15
2372 2448 4.506654 CGGTATTTGCCACAGTACTATGAC 59.493 45.833 1.76 0.00 0.00 3.06
2373 2449 5.671493 GGTATTTGCCACAGTACTATGACT 58.329 41.667 1.76 0.00 0.00 3.41
2374 2450 6.460537 CGGTATTTGCCACAGTACTATGACTA 60.461 42.308 1.76 0.00 0.00 2.59
2375 2451 6.700520 GGTATTTGCCACAGTACTATGACTAC 59.299 42.308 1.76 0.00 0.00 2.73
2376 2452 5.995565 TTTGCCACAGTACTATGACTACT 57.004 39.130 1.76 0.00 0.00 2.57
2377 2453 5.995565 TTGCCACAGTACTATGACTACTT 57.004 39.130 1.76 0.00 0.00 2.24
2378 2454 7.470935 TTTGCCACAGTACTATGACTACTTA 57.529 36.000 1.76 0.00 0.00 2.24
2379 2455 6.446781 TGCCACAGTACTATGACTACTTAC 57.553 41.667 1.76 0.00 0.00 2.34
2380 2456 5.359009 TGCCACAGTACTATGACTACTTACC 59.641 44.000 1.76 0.00 0.00 2.85
2381 2457 5.359009 GCCACAGTACTATGACTACTTACCA 59.641 44.000 1.76 0.00 0.00 3.25
2382 2458 6.040616 GCCACAGTACTATGACTACTTACCAT 59.959 42.308 1.76 0.00 0.00 3.55
2383 2459 7.426410 CCACAGTACTATGACTACTTACCATG 58.574 42.308 1.76 0.00 0.00 3.66
2384 2460 6.918569 CACAGTACTATGACTACTTACCATGC 59.081 42.308 0.00 0.00 0.00 4.06
2385 2461 6.834451 ACAGTACTATGACTACTTACCATGCT 59.166 38.462 0.00 0.00 0.00 3.79
2386 2462 7.997223 ACAGTACTATGACTACTTACCATGCTA 59.003 37.037 0.00 0.00 0.00 3.49
2387 2463 9.015367 CAGTACTATGACTACTTACCATGCTAT 57.985 37.037 0.00 0.00 0.00 2.97
2388 2464 9.589461 AGTACTATGACTACTTACCATGCTATT 57.411 33.333 0.00 0.00 0.00 1.73
2391 2467 9.589461 ACTATGACTACTTACCATGCTATTACT 57.411 33.333 0.00 0.00 0.00 2.24
2413 2489 7.859325 ACTTATTGATAACAACTATTGCCGT 57.141 32.000 0.00 0.00 38.90 5.68
2414 2490 8.951787 ACTTATTGATAACAACTATTGCCGTA 57.048 30.769 0.00 0.00 38.90 4.02
2415 2491 9.386010 ACTTATTGATAACAACTATTGCCGTAA 57.614 29.630 0.00 0.00 38.90 3.18
2416 2492 9.646336 CTTATTGATAACAACTATTGCCGTAAC 57.354 33.333 0.00 0.00 38.90 2.50
2417 2493 7.859325 ATTGATAACAACTATTGCCGTAACT 57.141 32.000 0.00 0.00 38.90 2.24
2418 2494 8.951787 ATTGATAACAACTATTGCCGTAACTA 57.048 30.769 0.00 0.00 38.90 2.24
2419 2495 8.951787 TTGATAACAACTATTGCCGTAACTAT 57.048 30.769 0.00 0.00 0.00 2.12
2421 2497 9.467258 TGATAACAACTATTGCCGTAACTATAC 57.533 33.333 0.00 0.00 0.00 1.47
2422 2498 9.467258 GATAACAACTATTGCCGTAACTATACA 57.533 33.333 0.00 0.00 32.02 2.29
2423 2499 7.529880 AACAACTATTGCCGTAACTATACAC 57.470 36.000 0.00 0.00 32.02 2.90
2424 2500 6.632909 ACAACTATTGCCGTAACTATACACA 58.367 36.000 0.00 0.00 32.02 3.72
2425 2501 7.098477 ACAACTATTGCCGTAACTATACACAA 58.902 34.615 0.00 0.00 34.27 3.33
2426 2502 7.603404 ACAACTATTGCCGTAACTATACACAAA 59.397 33.333 0.00 0.00 33.78 2.83
2427 2503 7.529880 ACTATTGCCGTAACTATACACAAAC 57.470 36.000 0.00 0.00 33.78 2.93
2428 2504 7.325694 ACTATTGCCGTAACTATACACAAACT 58.674 34.615 0.00 0.00 33.78 2.66
2429 2505 8.469200 ACTATTGCCGTAACTATACACAAACTA 58.531 33.333 0.00 0.00 33.78 2.24
2430 2506 9.472361 CTATTGCCGTAACTATACACAAACTAT 57.528 33.333 0.00 0.00 33.78 2.12
2431 2507 7.528481 TTGCCGTAACTATACACAAACTATG 57.472 36.000 0.00 0.00 29.59 2.23
2432 2508 6.632909 TGCCGTAACTATACACAAACTATGT 58.367 36.000 0.00 0.00 45.34 2.29
2444 2520 5.804692 ACAAACTATGTGACAAACGTTCA 57.195 34.783 0.00 0.00 41.93 3.18
2445 2521 5.565695 ACAAACTATGTGACAAACGTTCAC 58.434 37.500 11.15 11.15 41.93 3.18
2446 2522 5.122554 ACAAACTATGTGACAAACGTTCACA 59.877 36.000 20.48 20.48 46.47 3.58
2447 2523 4.789095 ACTATGTGACAAACGTTCACAC 57.211 40.909 20.58 19.51 45.46 3.82
2448 2524 4.439057 ACTATGTGACAAACGTTCACACT 58.561 39.130 20.58 13.41 45.46 3.55
2449 2525 4.873827 ACTATGTGACAAACGTTCACACTT 59.126 37.500 20.58 18.73 45.46 3.16
2450 2526 6.044046 ACTATGTGACAAACGTTCACACTTA 58.956 36.000 20.58 18.82 45.46 2.24
2451 2527 5.804692 ATGTGACAAACGTTCACACTTAA 57.195 34.783 20.58 8.05 45.46 1.85
2452 2528 5.608676 TGTGACAAACGTTCACACTTAAA 57.391 34.783 15.72 2.93 39.16 1.52
2453 2529 5.998553 TGTGACAAACGTTCACACTTAAAA 58.001 33.333 15.72 2.63 39.16 1.52
2454 2530 6.436261 TGTGACAAACGTTCACACTTAAAAA 58.564 32.000 15.72 2.06 39.16 1.94
2455 2531 7.085116 TGTGACAAACGTTCACACTTAAAAAT 58.915 30.769 15.72 0.00 39.16 1.82
2456 2532 7.061210 TGTGACAAACGTTCACACTTAAAAATG 59.939 33.333 15.72 2.33 39.16 2.32
2457 2533 6.528423 TGACAAACGTTCACACTTAAAAATGG 59.472 34.615 0.00 0.00 0.00 3.16
2458 2534 6.391537 ACAAACGTTCACACTTAAAAATGGT 58.608 32.000 0.00 0.00 0.00 3.55
2459 2535 7.536855 ACAAACGTTCACACTTAAAAATGGTA 58.463 30.769 0.00 0.00 0.00 3.25
2460 2536 8.027771 ACAAACGTTCACACTTAAAAATGGTAA 58.972 29.630 0.00 0.00 0.00 2.85
2461 2537 9.026074 CAAACGTTCACACTTAAAAATGGTAAT 57.974 29.630 0.00 0.00 0.00 1.89
2481 2557 9.836864 TGGTAATATATGATGACATAATCTGGC 57.163 33.333 0.00 0.00 41.46 4.85
2488 2564 3.719268 TGACATAATCTGGCAACTGGT 57.281 42.857 0.00 0.00 41.03 4.00
2489 2565 3.346315 TGACATAATCTGGCAACTGGTG 58.654 45.455 0.00 0.00 41.03 4.17
2499 2575 3.549997 CAACTGGTGCCGACAAAAG 57.450 52.632 0.00 0.00 0.00 2.27
2500 2576 1.021202 CAACTGGTGCCGACAAAAGA 58.979 50.000 0.00 0.00 0.00 2.52
2501 2577 1.403679 CAACTGGTGCCGACAAAAGAA 59.596 47.619 0.00 0.00 0.00 2.52
2502 2578 1.757682 ACTGGTGCCGACAAAAGAAA 58.242 45.000 0.00 0.00 0.00 2.52
2503 2579 2.306847 ACTGGTGCCGACAAAAGAAAT 58.693 42.857 0.00 0.00 0.00 2.17
2504 2580 2.693074 ACTGGTGCCGACAAAAGAAATT 59.307 40.909 0.00 0.00 0.00 1.82
2505 2581 3.886505 ACTGGTGCCGACAAAAGAAATTA 59.113 39.130 0.00 0.00 0.00 1.40
2506 2582 4.226761 CTGGTGCCGACAAAAGAAATTAC 58.773 43.478 0.00 0.00 0.00 1.89
2507 2583 3.886505 TGGTGCCGACAAAAGAAATTACT 59.113 39.130 0.00 0.00 0.00 2.24
2508 2584 4.226761 GGTGCCGACAAAAGAAATTACTG 58.773 43.478 0.00 0.00 0.00 2.74
2509 2585 4.023536 GGTGCCGACAAAAGAAATTACTGA 60.024 41.667 0.00 0.00 0.00 3.41
2510 2586 5.506649 GGTGCCGACAAAAGAAATTACTGAA 60.507 40.000 0.00 0.00 0.00 3.02
2511 2587 5.974751 GTGCCGACAAAAGAAATTACTGAAA 59.025 36.000 0.00 0.00 0.00 2.69
2512 2588 5.974751 TGCCGACAAAAGAAATTACTGAAAC 59.025 36.000 0.00 0.00 0.00 2.78
2513 2589 5.974751 GCCGACAAAAGAAATTACTGAAACA 59.025 36.000 0.00 0.00 0.00 2.83
2514 2590 6.640907 GCCGACAAAAGAAATTACTGAAACAT 59.359 34.615 0.00 0.00 0.00 2.71
2515 2591 7.358352 GCCGACAAAAGAAATTACTGAAACATG 60.358 37.037 0.00 0.00 0.00 3.21
2516 2592 7.647715 CCGACAAAAGAAATTACTGAAACATGT 59.352 33.333 0.00 0.00 0.00 3.21
2517 2593 8.682016 CGACAAAAGAAATTACTGAAACATGTC 58.318 33.333 0.00 0.00 0.00 3.06
2518 2594 9.515020 GACAAAAGAAATTACTGAAACATGTCA 57.485 29.630 0.00 0.00 33.15 3.58
2519 2595 9.868277 ACAAAAGAAATTACTGAAACATGTCAA 57.132 25.926 0.00 0.00 0.00 3.18
2521 2597 8.560576 AAAGAAATTACTGAAACATGTCAACG 57.439 30.769 0.00 0.00 0.00 4.10
2522 2598 7.259290 AGAAATTACTGAAACATGTCAACGT 57.741 32.000 0.00 0.00 0.00 3.99
2523 2599 7.132213 AGAAATTACTGAAACATGTCAACGTG 58.868 34.615 0.00 0.82 38.76 4.49
2524 2600 6.612247 AATTACTGAAACATGTCAACGTGA 57.388 33.333 9.26 0.00 36.72 4.35
2525 2601 5.651172 TTACTGAAACATGTCAACGTGAG 57.349 39.130 9.26 0.00 36.72 3.51
2526 2602 3.792401 ACTGAAACATGTCAACGTGAGA 58.208 40.909 9.26 0.00 36.72 3.27
2527 2603 4.380531 ACTGAAACATGTCAACGTGAGAT 58.619 39.130 9.26 0.00 36.72 2.75
2532 2608 2.843077 CATGTCAACGTGAGATGTTGC 58.157 47.619 13.36 1.51 43.05 4.17
2533 2609 2.238942 TGTCAACGTGAGATGTTGCT 57.761 45.000 4.14 0.00 43.05 3.91
2534 2610 2.560504 TGTCAACGTGAGATGTTGCTT 58.439 42.857 4.14 0.00 43.05 3.91
2535 2611 2.543848 TGTCAACGTGAGATGTTGCTTC 59.456 45.455 4.14 0.00 43.05 3.86
2536 2612 2.543848 GTCAACGTGAGATGTTGCTTCA 59.456 45.455 4.14 0.00 43.05 3.02
2537 2613 3.002246 GTCAACGTGAGATGTTGCTTCAA 59.998 43.478 4.14 0.00 43.05 2.69
2538 2614 3.625313 TCAACGTGAGATGTTGCTTCAAA 59.375 39.130 4.14 0.00 43.05 2.69
2539 2615 3.885484 ACGTGAGATGTTGCTTCAAAG 57.115 42.857 0.00 0.00 0.00 2.77
2540 2616 7.703195 TCAACGTGAGATGTTGCTTCAAAGC 62.703 44.000 7.79 7.79 43.05 3.51
2549 2625 3.271250 GCTTCAAAGCCCTCATGGA 57.729 52.632 3.27 0.00 46.20 3.41
2550 2626 1.101331 GCTTCAAAGCCCTCATGGAG 58.899 55.000 3.27 0.00 46.20 3.86
2561 2637 0.179936 CTCATGGAGGAGAACCCAGC 59.820 60.000 0.00 0.00 37.05 4.85
2562 2638 1.153289 CATGGAGGAGAACCCAGCG 60.153 63.158 0.00 0.00 35.67 5.18
2563 2639 2.370445 ATGGAGGAGAACCCAGCGG 61.370 63.158 0.00 0.00 35.67 5.52
2565 2641 2.266055 GAGGAGAACCCAGCGGTG 59.734 66.667 7.86 7.86 43.71 4.94
2566 2642 2.203788 AGGAGAACCCAGCGGTGA 60.204 61.111 17.83 0.00 43.71 4.02
2567 2643 1.827399 GAGGAGAACCCAGCGGTGAA 61.827 60.000 17.83 0.00 43.71 3.18
2568 2644 1.072505 GGAGAACCCAGCGGTGAAA 59.927 57.895 17.83 0.00 43.71 2.69
2569 2645 0.955919 GGAGAACCCAGCGGTGAAAG 60.956 60.000 17.83 6.95 43.71 2.62
2570 2646 0.034896 GAGAACCCAGCGGTGAAAGA 59.965 55.000 17.83 0.00 43.71 2.52
2571 2647 0.472471 AGAACCCAGCGGTGAAAGAA 59.528 50.000 17.83 0.00 43.71 2.52
2572 2648 1.133915 AGAACCCAGCGGTGAAAGAAA 60.134 47.619 17.83 0.00 43.71 2.52
2573 2649 1.266989 GAACCCAGCGGTGAAAGAAAG 59.733 52.381 17.83 0.00 43.71 2.62
2574 2650 0.537371 ACCCAGCGGTGAAAGAAAGG 60.537 55.000 17.83 9.23 42.48 3.11
2575 2651 0.537371 CCCAGCGGTGAAAGAAAGGT 60.537 55.000 17.83 0.00 0.00 3.50
2576 2652 0.875059 CCAGCGGTGAAAGAAAGGTC 59.125 55.000 17.83 0.00 0.00 3.85
2577 2653 0.512952 CAGCGGTGAAAGAAAGGTCG 59.487 55.000 9.50 0.00 0.00 4.79
2578 2654 1.206831 GCGGTGAAAGAAAGGTCGC 59.793 57.895 0.00 0.00 35.12 5.19
2579 2655 1.228657 GCGGTGAAAGAAAGGTCGCT 61.229 55.000 0.00 0.00 38.82 4.93
2580 2656 1.938016 GCGGTGAAAGAAAGGTCGCTA 60.938 52.381 0.00 0.00 38.82 4.26
2581 2657 2.409975 CGGTGAAAGAAAGGTCGCTAA 58.590 47.619 0.00 0.00 0.00 3.09
2582 2658 3.000727 CGGTGAAAGAAAGGTCGCTAAT 58.999 45.455 0.00 0.00 0.00 1.73
2583 2659 3.062234 CGGTGAAAGAAAGGTCGCTAATC 59.938 47.826 0.00 0.00 0.00 1.75
2584 2660 3.062234 GGTGAAAGAAAGGTCGCTAATCG 59.938 47.826 0.00 0.00 40.15 3.34
2585 2661 3.924686 GTGAAAGAAAGGTCGCTAATCGA 59.075 43.478 0.00 0.00 46.29 3.59
2597 2673 5.712217 TCGCTAATCGAACTAATGGTTTG 57.288 39.130 0.00 0.00 45.36 2.93
2598 2674 4.033587 TCGCTAATCGAACTAATGGTTTGC 59.966 41.667 0.00 0.00 45.36 3.68
2599 2675 4.271687 GCTAATCGAACTAATGGTTTGCG 58.728 43.478 0.00 0.00 38.77 4.85
2600 2676 4.033587 GCTAATCGAACTAATGGTTTGCGA 59.966 41.667 0.00 0.00 38.77 5.10
2601 2677 4.600012 AATCGAACTAATGGTTTGCGAG 57.400 40.909 0.00 0.00 37.50 5.03
2602 2678 3.306917 TCGAACTAATGGTTTGCGAGA 57.693 42.857 0.00 0.00 38.77 4.04
2603 2679 3.857052 TCGAACTAATGGTTTGCGAGAT 58.143 40.909 0.00 0.00 38.77 2.75
2604 2680 5.001237 TCGAACTAATGGTTTGCGAGATA 57.999 39.130 0.00 0.00 38.77 1.98
2605 2681 4.802039 TCGAACTAATGGTTTGCGAGATAC 59.198 41.667 0.00 0.00 38.77 2.24
2606 2682 4.804139 CGAACTAATGGTTTGCGAGATACT 59.196 41.667 0.00 0.00 38.41 2.12
2607 2683 5.975344 CGAACTAATGGTTTGCGAGATACTA 59.025 40.000 0.00 0.00 38.41 1.82
2608 2684 6.074994 CGAACTAATGGTTTGCGAGATACTAC 60.075 42.308 0.00 0.00 38.41 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.514330 AGACTTTACCACACTTTATTTTGTCA 57.486 30.769 0.00 0.00 0.00 3.58
74 80 2.499289 TGCACAAACCTCAAACCAATGT 59.501 40.909 0.00 0.00 0.00 2.71
76 82 5.743636 ATATGCACAAACCTCAAACCAAT 57.256 34.783 0.00 0.00 0.00 3.16
153 160 4.260170 CATGCTTAAGTTCTCAGCCTTCT 58.740 43.478 4.02 0.00 32.11 2.85
154 161 3.376546 CCATGCTTAAGTTCTCAGCCTTC 59.623 47.826 4.02 0.00 32.11 3.46
156 163 2.573462 TCCATGCTTAAGTTCTCAGCCT 59.427 45.455 4.02 0.00 32.11 4.58
158 165 6.683974 TTATTCCATGCTTAAGTTCTCAGC 57.316 37.500 4.02 0.00 0.00 4.26
159 166 8.674263 AGATTATTCCATGCTTAAGTTCTCAG 57.326 34.615 4.02 0.00 0.00 3.35
196 204 9.562583 GTACAAATCTCAAAACACAAACACTTA 57.437 29.630 0.00 0.00 0.00 2.24
197 205 8.085296 TGTACAAATCTCAAAACACAAACACTT 58.915 29.630 0.00 0.00 0.00 3.16
198 206 7.598278 TGTACAAATCTCAAAACACAAACACT 58.402 30.769 0.00 0.00 0.00 3.55
386 398 8.283291 CACAGTTCTATTTCAAGGTAACACTTC 58.717 37.037 0.00 0.00 41.41 3.01
404 416 3.088532 TGTTCTGTTTTGCCACAGTTCT 58.911 40.909 7.46 0.00 44.10 3.01
409 421 2.722094 AGTCTGTTCTGTTTTGCCACA 58.278 42.857 0.00 0.00 0.00 4.17
410 422 3.128589 TCAAGTCTGTTCTGTTTTGCCAC 59.871 43.478 0.00 0.00 0.00 5.01
426 438 6.935208 AGGATGTGGTTAGTAGTTTTCAAGTC 59.065 38.462 0.00 0.00 0.00 3.01
491 503 3.554752 CCCATGGTGTTGGTCATTGTTTC 60.555 47.826 11.73 0.00 34.77 2.78
507 519 1.818060 TCGTTTCATGCTTTCCCATGG 59.182 47.619 4.14 4.14 42.19 3.66
549 561 1.413008 GGCAACATCCGCGCATTTTC 61.413 55.000 8.75 0.00 0.00 2.29
550 562 1.445926 GGCAACATCCGCGCATTTT 60.446 52.632 8.75 0.00 0.00 1.82
558 570 3.125316 GTCTTTACTTGAGGCAACATCCG 59.875 47.826 0.00 0.00 41.41 4.18
561 573 3.181434 TGGGTCTTTACTTGAGGCAACAT 60.181 43.478 0.00 0.00 41.41 2.71
617 629 6.953520 TCATGGTATTGAGAAAACTCCCAATT 59.046 34.615 0.00 0.00 32.28 2.32
654 668 7.815383 ACCATACCATAGATCTGGATTTTTCA 58.185 34.615 5.18 0.00 39.73 2.69
655 669 9.965902 ATACCATACCATAGATCTGGATTTTTC 57.034 33.333 5.18 0.00 39.73 2.29
665 679 5.939764 TCTGCCATACCATACCATAGATC 57.060 43.478 0.00 0.00 0.00 2.75
672 686 5.376625 TCTTCATTTCTGCCATACCATACC 58.623 41.667 0.00 0.00 0.00 2.73
677 691 5.506317 CGGATTTCTTCATTTCTGCCATACC 60.506 44.000 0.00 0.00 0.00 2.73
684 698 6.925610 TGGTATCGGATTTCTTCATTTCTG 57.074 37.500 0.00 0.00 0.00 3.02
686 700 7.707104 ACATTGGTATCGGATTTCTTCATTTC 58.293 34.615 0.00 0.00 0.00 2.17
761 780 4.490479 GCGTCGCAACTAAGCTTTAGTAAG 60.490 45.833 13.44 0.00 34.36 2.34
762 781 3.365820 GCGTCGCAACTAAGCTTTAGTAA 59.634 43.478 13.44 0.00 0.00 2.24
774 793 6.657836 AATTAATTAGTAAGCGTCGCAACT 57.342 33.333 23.24 23.24 33.09 3.16
815 834 0.036388 GTGCGTCCTTCATTCCCAGA 60.036 55.000 0.00 0.00 0.00 3.86
852 876 3.065925 GGTTATGATCACCAGCTTTCTGC 59.934 47.826 0.00 0.00 39.00 4.26
889 913 1.123077 AACGCTATCAGGCTCCATGA 58.877 50.000 0.00 0.00 0.00 3.07
896 926 1.756375 CGTCAGCAACGCTATCAGGC 61.756 60.000 0.00 0.00 45.76 4.85
1003 1063 1.559368 TTGCCTTGATGGTTGATGGG 58.441 50.000 0.00 0.00 38.35 4.00
1033 1093 1.881973 TGGTGAAGTGCTTGCAATCTC 59.118 47.619 0.00 0.00 0.00 2.75
1036 1096 0.316204 GCTGGTGAAGTGCTTGCAAT 59.684 50.000 0.00 0.00 0.00 3.56
1040 1100 2.195922 GTTTTGCTGGTGAAGTGCTTG 58.804 47.619 0.00 0.00 0.00 4.01
1041 1101 1.824230 TGTTTTGCTGGTGAAGTGCTT 59.176 42.857 0.00 0.00 0.00 3.91
1046 1106 2.612212 AGTACGTGTTTTGCTGGTGAAG 59.388 45.455 0.00 0.00 0.00 3.02
1058 1118 5.555017 TCTCTGTAACCTCTAGTACGTGTT 58.445 41.667 0.00 0.00 0.00 3.32
1060 1120 5.447548 GCTTCTCTGTAACCTCTAGTACGTG 60.448 48.000 0.00 0.00 0.00 4.49
1063 1123 4.948621 TGGCTTCTCTGTAACCTCTAGTAC 59.051 45.833 0.00 0.00 0.00 2.73
1064 1124 5.188988 TGGCTTCTCTGTAACCTCTAGTA 57.811 43.478 0.00 0.00 0.00 1.82
1065 1125 4.020543 CTGGCTTCTCTGTAACCTCTAGT 58.979 47.826 0.00 0.00 0.00 2.57
1066 1126 3.181480 GCTGGCTTCTCTGTAACCTCTAG 60.181 52.174 0.00 0.00 0.00 2.43
1106 1169 3.124921 CGGCCACCATCCGTGAAC 61.125 66.667 2.24 0.00 46.20 3.18
1369 1435 1.760480 GCCTCACCTCCTCCTCCTC 60.760 68.421 0.00 0.00 0.00 3.71
1370 1436 2.366570 GCCTCACCTCCTCCTCCT 59.633 66.667 0.00 0.00 0.00 3.69
1371 1437 3.151022 CGCCTCACCTCCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
1372 1438 3.151022 CCGCCTCACCTCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
1920 1989 4.883585 ACGTCCATCATATGAAACTGCAAT 59.116 37.500 9.99 0.00 0.00 3.56
1929 1998 8.558700 CATACAATTGAAACGTCCATCATATGA 58.441 33.333 13.59 8.10 0.00 2.15
1930 1999 8.344831 ACATACAATTGAAACGTCCATCATATG 58.655 33.333 13.59 7.29 0.00 1.78
1931 2000 8.450578 ACATACAATTGAAACGTCCATCATAT 57.549 30.769 13.59 0.00 0.00 1.78
1932 2001 7.857734 ACATACAATTGAAACGTCCATCATA 57.142 32.000 13.59 0.00 0.00 2.15
1959 2030 0.323360 TAAGCATCACACCCAAGCCC 60.323 55.000 0.00 0.00 0.00 5.19
2013 2084 5.233902 CCGTCAACTTCTCTTCATCATCATC 59.766 44.000 0.00 0.00 0.00 2.92
2014 2085 5.114780 CCGTCAACTTCTCTTCATCATCAT 58.885 41.667 0.00 0.00 0.00 2.45
2015 2086 4.021104 ACCGTCAACTTCTCTTCATCATCA 60.021 41.667 0.00 0.00 0.00 3.07
2035 2106 4.331137 CGCTTATTTACAACATGACACCG 58.669 43.478 0.00 0.00 0.00 4.94
2057 2128 5.059833 CAGGTCAAATAGGAAGAGGTATGC 58.940 45.833 0.00 0.00 0.00 3.14
2101 2177 9.553064 ACCATTTGCTTAAAATAATCACAAACA 57.447 25.926 0.00 0.00 36.28 2.83
2153 2229 8.466798 GGCGCCAATATCCTTTATTATTTATGT 58.533 33.333 24.80 0.00 0.00 2.29
2154 2230 8.465999 TGGCGCCAATATCCTTTATTATTTATG 58.534 33.333 30.74 0.00 0.00 1.90
2156 2232 7.448777 TGTGGCGCCAATATCCTTTATTATTTA 59.551 33.333 34.66 0.00 0.00 1.40
2179 2255 0.457166 CGCATGAAGGCCAACATGTG 60.457 55.000 29.33 28.65 44.43 3.21
2180 2256 1.597797 CCGCATGAAGGCCAACATGT 61.598 55.000 29.33 0.00 43.67 3.21
2181 2257 1.140161 CCGCATGAAGGCCAACATG 59.860 57.895 26.92 26.92 44.32 3.21
2182 2258 3.607163 CCGCATGAAGGCCAACAT 58.393 55.556 5.01 7.24 0.00 2.71
2189 2265 4.776322 TGGGTCGCCGCATGAAGG 62.776 66.667 0.00 0.00 0.00 3.46
2190 2266 3.499737 GTGGGTCGCCGCATGAAG 61.500 66.667 0.00 0.00 35.80 3.02
2191 2267 3.545124 AAGTGGGTCGCCGCATGAA 62.545 57.895 0.00 0.00 35.80 2.57
2197 2273 2.434359 GAAGGAAGTGGGTCGCCG 60.434 66.667 0.00 0.00 0.00 6.46
2202 2278 2.373502 CAAAGGAGAGAAGGAAGTGGGT 59.626 50.000 0.00 0.00 0.00 4.51
2204 2280 2.224621 TGCAAAGGAGAGAAGGAAGTGG 60.225 50.000 0.00 0.00 0.00 4.00
2217 2293 8.095792 ACATTAAATCATTGTTGATGCAAAGGA 58.904 29.630 0.00 0.00 41.83 3.36
2262 2338 9.471702 AAGGTAATGATGAAATGTTTGAGAGAT 57.528 29.630 0.00 0.00 0.00 2.75
2263 2339 8.868522 AAGGTAATGATGAAATGTTTGAGAGA 57.131 30.769 0.00 0.00 0.00 3.10
2264 2340 8.733458 TGAAGGTAATGATGAAATGTTTGAGAG 58.267 33.333 0.00 0.00 0.00 3.20
2265 2341 8.634335 TGAAGGTAATGATGAAATGTTTGAGA 57.366 30.769 0.00 0.00 0.00 3.27
2266 2342 9.512435 GATGAAGGTAATGATGAAATGTTTGAG 57.488 33.333 0.00 0.00 0.00 3.02
2267 2343 9.022884 TGATGAAGGTAATGATGAAATGTTTGA 57.977 29.630 0.00 0.00 0.00 2.69
2268 2344 9.079833 GTGATGAAGGTAATGATGAAATGTTTG 57.920 33.333 0.00 0.00 0.00 2.93
2269 2345 7.970061 CGTGATGAAGGTAATGATGAAATGTTT 59.030 33.333 0.00 0.00 0.00 2.83
2270 2346 7.415541 CCGTGATGAAGGTAATGATGAAATGTT 60.416 37.037 0.00 0.00 0.00 2.71
2271 2347 6.038603 CCGTGATGAAGGTAATGATGAAATGT 59.961 38.462 0.00 0.00 0.00 2.71
2272 2348 6.038603 ACCGTGATGAAGGTAATGATGAAATG 59.961 38.462 0.00 0.00 39.30 2.32
2273 2349 6.038603 CACCGTGATGAAGGTAATGATGAAAT 59.961 38.462 0.00 0.00 39.00 2.17
2274 2350 5.353956 CACCGTGATGAAGGTAATGATGAAA 59.646 40.000 0.00 0.00 39.00 2.69
2275 2351 4.875536 CACCGTGATGAAGGTAATGATGAA 59.124 41.667 0.00 0.00 39.00 2.57
2276 2352 4.161377 TCACCGTGATGAAGGTAATGATGA 59.839 41.667 0.00 0.00 39.00 2.92
2277 2353 4.441792 TCACCGTGATGAAGGTAATGATG 58.558 43.478 0.00 0.00 39.00 3.07
2278 2354 4.405680 TCTCACCGTGATGAAGGTAATGAT 59.594 41.667 0.62 0.00 39.00 2.45
2279 2355 3.767131 TCTCACCGTGATGAAGGTAATGA 59.233 43.478 0.62 0.00 39.00 2.57
2280 2356 4.123497 TCTCACCGTGATGAAGGTAATG 57.877 45.455 0.62 0.00 39.00 1.90
2281 2357 4.651503 AGATCTCACCGTGATGAAGGTAAT 59.348 41.667 0.62 0.00 39.00 1.89
2282 2358 4.023980 AGATCTCACCGTGATGAAGGTAA 58.976 43.478 0.62 0.00 39.00 2.85
2283 2359 3.632333 AGATCTCACCGTGATGAAGGTA 58.368 45.455 0.62 0.00 39.00 3.08
2284 2360 2.461695 AGATCTCACCGTGATGAAGGT 58.538 47.619 0.62 0.00 42.34 3.50
2285 2361 3.533606 AAGATCTCACCGTGATGAAGG 57.466 47.619 0.62 0.00 0.00 3.46
2286 2362 4.498241 TCAAAGATCTCACCGTGATGAAG 58.502 43.478 0.62 0.00 0.00 3.02
2287 2363 4.535526 TCAAAGATCTCACCGTGATGAA 57.464 40.909 0.62 0.00 0.00 2.57
2288 2364 4.535526 TTCAAAGATCTCACCGTGATGA 57.464 40.909 0.62 0.00 0.00 2.92
2289 2365 4.692625 AGTTTCAAAGATCTCACCGTGATG 59.307 41.667 0.62 0.00 0.00 3.07
2290 2366 4.899502 AGTTTCAAAGATCTCACCGTGAT 58.100 39.130 0.62 0.00 0.00 3.06
2291 2367 4.336889 AGTTTCAAAGATCTCACCGTGA 57.663 40.909 0.00 0.29 0.00 4.35
2292 2368 6.539649 TTTAGTTTCAAAGATCTCACCGTG 57.460 37.500 0.00 0.00 0.00 4.94
2293 2369 6.371825 GGATTTAGTTTCAAAGATCTCACCGT 59.628 38.462 0.00 0.00 0.00 4.83
2294 2370 6.183360 GGGATTTAGTTTCAAAGATCTCACCG 60.183 42.308 0.00 0.00 0.00 4.94
2295 2371 6.183360 CGGGATTTAGTTTCAAAGATCTCACC 60.183 42.308 0.00 0.00 0.00 4.02
2296 2372 6.371825 ACGGGATTTAGTTTCAAAGATCTCAC 59.628 38.462 0.00 0.00 0.00 3.51
2297 2373 6.371548 CACGGGATTTAGTTTCAAAGATCTCA 59.628 38.462 0.00 0.00 0.00 3.27
2298 2374 6.371825 ACACGGGATTTAGTTTCAAAGATCTC 59.628 38.462 0.00 0.00 0.00 2.75
2299 2375 6.238648 ACACGGGATTTAGTTTCAAAGATCT 58.761 36.000 0.00 0.00 0.00 2.75
2300 2376 6.148811 TGACACGGGATTTAGTTTCAAAGATC 59.851 38.462 0.00 0.00 0.00 2.75
2301 2377 6.001460 TGACACGGGATTTAGTTTCAAAGAT 58.999 36.000 0.00 0.00 0.00 2.40
2302 2378 5.369833 TGACACGGGATTTAGTTTCAAAGA 58.630 37.500 0.00 0.00 0.00 2.52
2303 2379 5.682943 TGACACGGGATTTAGTTTCAAAG 57.317 39.130 0.00 0.00 0.00 2.77
2304 2380 5.357314 TGTTGACACGGGATTTAGTTTCAAA 59.643 36.000 0.00 0.00 38.33 2.69
2305 2381 4.882427 TGTTGACACGGGATTTAGTTTCAA 59.118 37.500 0.00 0.00 35.50 2.69
2306 2382 4.452825 TGTTGACACGGGATTTAGTTTCA 58.547 39.130 0.00 0.00 0.00 2.69
2307 2383 5.180492 TCATGTTGACACGGGATTTAGTTTC 59.820 40.000 0.00 0.00 0.00 2.78
2308 2384 5.067273 TCATGTTGACACGGGATTTAGTTT 58.933 37.500 0.00 0.00 0.00 2.66
2309 2385 4.647611 TCATGTTGACACGGGATTTAGTT 58.352 39.130 0.00 0.00 0.00 2.24
2310 2386 4.280436 TCATGTTGACACGGGATTTAGT 57.720 40.909 0.00 0.00 0.00 2.24
2311 2387 5.818136 AATCATGTTGACACGGGATTTAG 57.182 39.130 0.00 0.00 0.00 1.85
2312 2388 5.707764 TCAAATCATGTTGACACGGGATTTA 59.292 36.000 14.49 6.48 35.05 1.40
2313 2389 4.522405 TCAAATCATGTTGACACGGGATTT 59.478 37.500 0.00 11.37 36.12 2.17
2314 2390 4.078537 TCAAATCATGTTGACACGGGATT 58.921 39.130 0.00 0.00 32.56 3.01
2315 2391 3.684908 TCAAATCATGTTGACACGGGAT 58.315 40.909 0.00 0.00 32.56 3.85
2316 2392 3.133141 TCAAATCATGTTGACACGGGA 57.867 42.857 0.00 0.00 32.56 5.14
2317 2393 4.439305 AATCAAATCATGTTGACACGGG 57.561 40.909 1.17 0.00 40.22 5.28
2318 2394 6.182039 AGTAATCAAATCATGTTGACACGG 57.818 37.500 1.17 0.00 40.22 4.94
2319 2395 8.506140 AAAAGTAATCAAATCATGTTGACACG 57.494 30.769 1.17 0.00 40.22 4.49
2342 2418 3.381908 ACTGTGGCAAATACCGACAAAAA 59.618 39.130 0.00 0.00 0.00 1.94
2343 2419 2.952978 ACTGTGGCAAATACCGACAAAA 59.047 40.909 0.00 0.00 0.00 2.44
2344 2420 2.577700 ACTGTGGCAAATACCGACAAA 58.422 42.857 0.00 0.00 0.00 2.83
2345 2421 2.264005 ACTGTGGCAAATACCGACAA 57.736 45.000 0.00 0.00 0.00 3.18
2346 2422 2.300723 AGTACTGTGGCAAATACCGACA 59.699 45.455 0.00 0.00 0.00 4.35
2347 2423 2.968675 AGTACTGTGGCAAATACCGAC 58.031 47.619 0.00 0.00 0.00 4.79
2348 2424 4.403113 TCATAGTACTGTGGCAAATACCGA 59.597 41.667 18.32 0.00 0.00 4.69
2349 2425 4.506654 GTCATAGTACTGTGGCAAATACCG 59.493 45.833 18.20 0.00 0.00 4.02
2350 2426 5.671493 AGTCATAGTACTGTGGCAAATACC 58.329 41.667 23.83 2.44 0.00 2.73
2351 2427 7.490000 AGTAGTCATAGTACTGTGGCAAATAC 58.510 38.462 23.83 17.13 33.34 1.89
2352 2428 7.655521 AGTAGTCATAGTACTGTGGCAAATA 57.344 36.000 23.83 7.20 33.34 1.40
2353 2429 6.546428 AGTAGTCATAGTACTGTGGCAAAT 57.454 37.500 23.83 8.13 33.34 2.32
2354 2430 5.995565 AGTAGTCATAGTACTGTGGCAAA 57.004 39.130 23.83 10.46 33.34 3.68
2355 2431 5.995565 AAGTAGTCATAGTACTGTGGCAA 57.004 39.130 23.83 5.93 34.74 4.52
2356 2432 5.359009 GGTAAGTAGTCATAGTACTGTGGCA 59.641 44.000 23.83 9.13 34.74 4.92
2357 2433 5.359009 TGGTAAGTAGTCATAGTACTGTGGC 59.641 44.000 15.71 15.71 34.74 5.01
2358 2434 7.426410 CATGGTAAGTAGTCATAGTACTGTGG 58.574 42.308 18.32 2.20 34.74 4.17
2359 2435 6.918569 GCATGGTAAGTAGTCATAGTACTGTG 59.081 42.308 13.09 13.09 34.74 3.66
2360 2436 6.834451 AGCATGGTAAGTAGTCATAGTACTGT 59.166 38.462 5.39 0.00 34.74 3.55
2361 2437 7.278461 AGCATGGTAAGTAGTCATAGTACTG 57.722 40.000 5.39 0.00 34.74 2.74
2362 2438 9.589461 AATAGCATGGTAAGTAGTCATAGTACT 57.411 33.333 8.98 0.00 35.96 2.73
2365 2441 9.589461 AGTAATAGCATGGTAAGTAGTCATAGT 57.411 33.333 8.98 0.00 0.00 2.12
2387 2463 9.386010 ACGGCAATAGTTGTTATCAATAAGTAA 57.614 29.630 0.00 0.00 35.92 2.24
2388 2464 8.951787 ACGGCAATAGTTGTTATCAATAAGTA 57.048 30.769 0.00 0.00 35.92 2.24
2389 2465 7.859325 ACGGCAATAGTTGTTATCAATAAGT 57.141 32.000 0.00 0.00 35.92 2.24
2390 2466 9.646336 GTTACGGCAATAGTTGTTATCAATAAG 57.354 33.333 0.00 0.00 35.92 1.73
2391 2467 9.386010 AGTTACGGCAATAGTTGTTATCAATAA 57.614 29.630 0.00 0.00 35.92 1.40
2392 2468 8.951787 AGTTACGGCAATAGTTGTTATCAATA 57.048 30.769 0.00 0.00 35.92 1.90
2393 2469 7.859325 AGTTACGGCAATAGTTGTTATCAAT 57.141 32.000 0.00 0.00 35.92 2.57
2394 2470 8.951787 ATAGTTACGGCAATAGTTGTTATCAA 57.048 30.769 0.00 0.00 0.00 2.57
2395 2471 9.467258 GTATAGTTACGGCAATAGTTGTTATCA 57.533 33.333 0.00 0.00 0.00 2.15
2396 2472 9.467258 TGTATAGTTACGGCAATAGTTGTTATC 57.533 33.333 0.00 0.00 0.00 1.75
2397 2473 9.252962 GTGTATAGTTACGGCAATAGTTGTTAT 57.747 33.333 0.00 0.00 0.00 1.89
2398 2474 8.249638 TGTGTATAGTTACGGCAATAGTTGTTA 58.750 33.333 0.00 0.00 0.00 2.41
2399 2475 7.098477 TGTGTATAGTTACGGCAATAGTTGTT 58.902 34.615 0.00 0.00 0.00 2.83
2400 2476 6.632909 TGTGTATAGTTACGGCAATAGTTGT 58.367 36.000 0.00 0.00 0.00 3.32
2401 2477 7.528481 TTGTGTATAGTTACGGCAATAGTTG 57.472 36.000 0.00 0.00 0.00 3.16
2402 2478 7.820872 AGTTTGTGTATAGTTACGGCAATAGTT 59.179 33.333 0.00 0.00 30.93 2.24
2403 2479 7.325694 AGTTTGTGTATAGTTACGGCAATAGT 58.674 34.615 0.00 0.00 30.93 2.12
2404 2480 7.766219 AGTTTGTGTATAGTTACGGCAATAG 57.234 36.000 0.00 0.00 30.93 1.73
2405 2481 9.251792 CATAGTTTGTGTATAGTTACGGCAATA 57.748 33.333 0.00 0.00 30.93 1.90
2406 2482 7.767198 ACATAGTTTGTGTATAGTTACGGCAAT 59.233 33.333 0.00 0.00 37.11 3.56
2407 2483 7.098477 ACATAGTTTGTGTATAGTTACGGCAA 58.902 34.615 0.00 0.00 37.11 4.52
2408 2484 6.632909 ACATAGTTTGTGTATAGTTACGGCA 58.367 36.000 0.00 0.00 37.11 5.69
2422 2498 5.122554 TGTGAACGTTTGTCACATAGTTTGT 59.877 36.000 15.72 0.00 39.16 2.83
2423 2499 5.451023 GTGTGAACGTTTGTCACATAGTTTG 59.549 40.000 20.95 0.00 44.64 2.93
2424 2500 5.353123 AGTGTGAACGTTTGTCACATAGTTT 59.647 36.000 20.95 6.10 44.64 2.66
2425 2501 4.873827 AGTGTGAACGTTTGTCACATAGTT 59.126 37.500 20.95 8.03 44.64 2.24
2426 2502 4.439057 AGTGTGAACGTTTGTCACATAGT 58.561 39.130 20.95 9.27 44.64 2.12
2427 2503 5.403897 AAGTGTGAACGTTTGTCACATAG 57.596 39.130 20.95 0.00 44.64 2.23
2428 2504 6.905544 TTAAGTGTGAACGTTTGTCACATA 57.094 33.333 20.95 14.89 44.64 2.29
2429 2505 5.804692 TTAAGTGTGAACGTTTGTCACAT 57.195 34.783 20.95 15.67 44.64 3.21
2430 2506 5.608676 TTTAAGTGTGAACGTTTGTCACA 57.391 34.783 15.72 15.72 41.40 3.58
2431 2507 6.914760 TTTTTAAGTGTGAACGTTTGTCAC 57.085 33.333 11.15 11.15 35.17 3.67
2432 2508 6.528423 CCATTTTTAAGTGTGAACGTTTGTCA 59.472 34.615 0.46 0.00 0.00 3.58
2433 2509 6.528774 ACCATTTTTAAGTGTGAACGTTTGTC 59.471 34.615 0.46 0.00 0.00 3.18
2434 2510 6.391537 ACCATTTTTAAGTGTGAACGTTTGT 58.608 32.000 0.46 0.00 0.00 2.83
2435 2511 6.879188 ACCATTTTTAAGTGTGAACGTTTG 57.121 33.333 0.46 0.00 0.00 2.93
2455 2531 9.836864 GCCAGATTATGTCATCATATATTACCA 57.163 33.333 0.00 0.00 36.57 3.25
2456 2532 9.836864 TGCCAGATTATGTCATCATATATTACC 57.163 33.333 0.00 0.00 36.57 2.85
2459 2535 9.970553 AGTTGCCAGATTATGTCATCATATATT 57.029 29.630 0.00 0.00 36.57 1.28
2460 2536 9.392259 CAGTTGCCAGATTATGTCATCATATAT 57.608 33.333 0.00 0.00 36.57 0.86
2461 2537 7.825761 CCAGTTGCCAGATTATGTCATCATATA 59.174 37.037 0.00 0.00 36.57 0.86
2462 2538 6.657966 CCAGTTGCCAGATTATGTCATCATAT 59.342 38.462 0.00 0.00 36.57 1.78
2463 2539 5.999600 CCAGTTGCCAGATTATGTCATCATA 59.000 40.000 0.00 0.00 35.70 2.15
2464 2540 4.825634 CCAGTTGCCAGATTATGTCATCAT 59.174 41.667 0.00 0.00 38.00 2.45
2465 2541 4.201657 CCAGTTGCCAGATTATGTCATCA 58.798 43.478 0.00 0.00 0.00 3.07
2466 2542 4.036027 CACCAGTTGCCAGATTATGTCATC 59.964 45.833 0.00 0.00 0.00 2.92
2467 2543 3.949754 CACCAGTTGCCAGATTATGTCAT 59.050 43.478 0.00 0.00 0.00 3.06
2468 2544 3.346315 CACCAGTTGCCAGATTATGTCA 58.654 45.455 0.00 0.00 0.00 3.58
2469 2545 2.098117 GCACCAGTTGCCAGATTATGTC 59.902 50.000 0.00 0.00 46.63 3.06
2470 2546 2.094675 GCACCAGTTGCCAGATTATGT 58.905 47.619 0.00 0.00 46.63 2.29
2471 2547 2.857592 GCACCAGTTGCCAGATTATG 57.142 50.000 0.00 0.00 46.63 1.90
2481 2557 1.021202 TCTTTTGTCGGCACCAGTTG 58.979 50.000 0.00 0.00 0.00 3.16
2482 2558 1.757682 TTCTTTTGTCGGCACCAGTT 58.242 45.000 0.00 0.00 0.00 3.16
2483 2559 1.757682 TTTCTTTTGTCGGCACCAGT 58.242 45.000 0.00 0.00 0.00 4.00
2484 2560 3.369546 AATTTCTTTTGTCGGCACCAG 57.630 42.857 0.00 0.00 0.00 4.00
2485 2561 3.886505 AGTAATTTCTTTTGTCGGCACCA 59.113 39.130 0.00 0.00 0.00 4.17
2486 2562 4.023536 TCAGTAATTTCTTTTGTCGGCACC 60.024 41.667 0.00 0.00 0.00 5.01
2487 2563 5.103290 TCAGTAATTTCTTTTGTCGGCAC 57.897 39.130 0.00 0.00 0.00 5.01
2488 2564 5.759506 TTCAGTAATTTCTTTTGTCGGCA 57.240 34.783 0.00 0.00 0.00 5.69
2489 2565 5.974751 TGTTTCAGTAATTTCTTTTGTCGGC 59.025 36.000 0.00 0.00 0.00 5.54
2490 2566 7.647715 ACATGTTTCAGTAATTTCTTTTGTCGG 59.352 33.333 0.00 0.00 0.00 4.79
2491 2567 8.560576 ACATGTTTCAGTAATTTCTTTTGTCG 57.439 30.769 0.00 0.00 0.00 4.35
2492 2568 9.515020 TGACATGTTTCAGTAATTTCTTTTGTC 57.485 29.630 0.00 0.00 0.00 3.18
2493 2569 9.868277 TTGACATGTTTCAGTAATTTCTTTTGT 57.132 25.926 0.00 0.00 0.00 2.83
2495 2571 9.019764 CGTTGACATGTTTCAGTAATTTCTTTT 57.980 29.630 0.00 0.00 0.00 2.27
2496 2572 8.188139 ACGTTGACATGTTTCAGTAATTTCTTT 58.812 29.630 0.00 0.00 0.00 2.52
2497 2573 7.643764 CACGTTGACATGTTTCAGTAATTTCTT 59.356 33.333 0.00 0.00 0.00 2.52
2498 2574 7.011950 TCACGTTGACATGTTTCAGTAATTTCT 59.988 33.333 0.00 0.00 0.00 2.52
2499 2575 7.129622 TCACGTTGACATGTTTCAGTAATTTC 58.870 34.615 0.00 0.00 0.00 2.17
2500 2576 7.011950 TCTCACGTTGACATGTTTCAGTAATTT 59.988 33.333 0.00 0.00 0.00 1.82
2501 2577 6.481976 TCTCACGTTGACATGTTTCAGTAATT 59.518 34.615 0.00 0.00 0.00 1.40
2502 2578 5.989168 TCTCACGTTGACATGTTTCAGTAAT 59.011 36.000 0.00 0.00 0.00 1.89
2503 2579 5.353111 TCTCACGTTGACATGTTTCAGTAA 58.647 37.500 0.00 0.00 0.00 2.24
2504 2580 4.939271 TCTCACGTTGACATGTTTCAGTA 58.061 39.130 0.00 0.00 0.00 2.74
2505 2581 3.792401 TCTCACGTTGACATGTTTCAGT 58.208 40.909 0.00 0.00 0.00 3.41
2506 2582 4.212004 ACATCTCACGTTGACATGTTTCAG 59.788 41.667 0.00 0.00 33.20 3.02
2507 2583 4.126437 ACATCTCACGTTGACATGTTTCA 58.874 39.130 0.00 0.00 33.20 2.69
2508 2584 4.732285 ACATCTCACGTTGACATGTTTC 57.268 40.909 0.00 0.00 33.20 2.78
2509 2585 4.789481 GCAACATCTCACGTTGACATGTTT 60.789 41.667 14.22 3.88 41.16 2.83
2510 2586 3.303990 GCAACATCTCACGTTGACATGTT 60.304 43.478 0.00 12.35 43.50 2.71
2511 2587 2.224079 GCAACATCTCACGTTGACATGT 59.776 45.455 0.00 0.00 45.30 3.21
2512 2588 2.481568 AGCAACATCTCACGTTGACATG 59.518 45.455 7.19 0.00 45.30 3.21
2513 2589 2.771089 AGCAACATCTCACGTTGACAT 58.229 42.857 7.19 0.00 45.30 3.06
2514 2590 2.238942 AGCAACATCTCACGTTGACA 57.761 45.000 7.19 0.00 45.30 3.58
2515 2591 2.543848 TGAAGCAACATCTCACGTTGAC 59.456 45.455 7.19 0.00 45.30 3.18
2516 2592 2.832563 TGAAGCAACATCTCACGTTGA 58.167 42.857 7.19 0.00 45.30 3.18
2517 2593 3.607422 TTGAAGCAACATCTCACGTTG 57.393 42.857 0.00 0.00 45.25 4.10
2518 2594 4.214980 CTTTGAAGCAACATCTCACGTT 57.785 40.909 0.00 0.00 0.00 3.99
2519 2595 3.885484 CTTTGAAGCAACATCTCACGT 57.115 42.857 0.00 0.00 0.00 4.49
2532 2608 1.760192 CCTCCATGAGGGCTTTGAAG 58.240 55.000 2.04 0.00 45.43 3.02
2533 2609 3.985410 CCTCCATGAGGGCTTTGAA 57.015 52.632 2.04 0.00 45.43 2.69
2542 2618 0.179936 GCTGGGTTCTCCTCCATGAG 59.820 60.000 0.00 0.00 36.20 2.90
2543 2619 1.617018 CGCTGGGTTCTCCTCCATGA 61.617 60.000 0.00 0.00 36.20 3.07
2544 2620 1.153289 CGCTGGGTTCTCCTCCATG 60.153 63.158 0.00 0.00 36.20 3.66
2545 2621 2.370445 CCGCTGGGTTCTCCTCCAT 61.370 63.158 0.00 0.00 36.20 3.41
2546 2622 3.003173 CCGCTGGGTTCTCCTCCA 61.003 66.667 0.00 0.00 36.20 3.86
2556 2632 0.537371 ACCTTTCTTTCACCGCTGGG 60.537 55.000 0.00 0.00 40.11 4.45
2557 2633 0.875059 GACCTTTCTTTCACCGCTGG 59.125 55.000 0.00 0.00 0.00 4.85
2558 2634 0.512952 CGACCTTTCTTTCACCGCTG 59.487 55.000 0.00 0.00 0.00 5.18
2559 2635 1.228657 GCGACCTTTCTTTCACCGCT 61.229 55.000 0.00 0.00 38.36 5.52
2560 2636 1.206831 GCGACCTTTCTTTCACCGC 59.793 57.895 0.00 0.00 0.00 5.68
2561 2637 2.074547 TAGCGACCTTTCTTTCACCG 57.925 50.000 0.00 0.00 0.00 4.94
2562 2638 3.062234 CGATTAGCGACCTTTCTTTCACC 59.938 47.826 0.00 0.00 44.57 4.02
2563 2639 3.924686 TCGATTAGCGACCTTTCTTTCAC 59.075 43.478 0.00 0.00 45.59 3.18
2564 2640 4.182693 TCGATTAGCGACCTTTCTTTCA 57.817 40.909 0.00 0.00 45.59 2.69
2576 2652 4.271687 GCAAACCATTAGTTCGATTAGCG 58.728 43.478 0.00 0.00 37.88 4.26
2577 2653 4.033587 TCGCAAACCATTAGTTCGATTAGC 59.966 41.667 0.00 0.00 37.88 3.09
2578 2654 5.518847 TCTCGCAAACCATTAGTTCGATTAG 59.481 40.000 0.00 0.00 37.88 1.73
2579 2655 5.412640 TCTCGCAAACCATTAGTTCGATTA 58.587 37.500 0.00 0.00 37.88 1.75
2580 2656 4.250464 TCTCGCAAACCATTAGTTCGATT 58.750 39.130 0.00 0.00 37.88 3.34
2581 2657 3.857052 TCTCGCAAACCATTAGTTCGAT 58.143 40.909 0.00 0.00 37.88 3.59
2582 2658 3.306917 TCTCGCAAACCATTAGTTCGA 57.693 42.857 0.00 0.00 37.88 3.71
2583 2659 4.804139 AGTATCTCGCAAACCATTAGTTCG 59.196 41.667 0.00 0.00 37.88 3.95
2584 2660 7.163027 GTAGTATCTCGCAAACCATTAGTTC 57.837 40.000 0.00 0.00 37.88 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.