>input_sequence_74274
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-------------------ATGCCCATCAACCATCAAGGCAATAATCCACGTGAGATTGCAAGCACTTCACCAGCAAAAC
ACGTACTAGAGGTTACAGAGAAGCCAGCA---GCAAGCAAGATTGAGCGTTCACGGATGGTGGCCGAGGCCGTGGCGCAG
GCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGAAAGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGC
GGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCCGCGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGG
ACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCCGCTGGAGACGACGGCGGAGCGGCCGGAGG---CGACGACGAGGAG
GAGGAGGTGAGGCGGCGGTGCCTGAGGGAGGCGTTCGCGATGTACGCGACGGGAGCCGGCGAGG---AGGGCGCCAGGAT
CACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGGTCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGA
TCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAA---
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>chr5D_1_TraesCS5D01G158700
GAATCATAAAGTAAGAGTAAATGTCAAAAAAATGACA-----AAATAAAGTGTGGTAAAGTCTAGAACAACCGAGGAGTA
CATTGGTTTGAGGTTTGTGCATATTATACATTGTAAATCGTAAAGTTAAAACATAATGATAAT-CATTTAGTGAAAAAAA
GAAGGCT-GAGAACTTAAGCATGGAATAATCTAGAACAAAGAATAAGTGTTTGTGTTTTGAGATTTGTACATTGTGCTTA
AGCTCTCAATCTTCAAGATAATACATATGGCAGAATTCGATGGATGGAGATGATATTCAA----TAATAGTGCTTGGATT
TGTCACATTTGTACCATCATACTGGCCTCATCCAATGATCAATATTCAAAGTTATTCGTACACTATATAATGGTATAGAA
GTGTTACCTTGAAATAGAACTGTGGCAAAACAGAACAGACTTGAAAACTACTAACCACATCCTCAAAATTTGGTCAAAAT
AATGATTTTTGACACGATCTTGGAAACAATGACCAACACCATGGGAAAGCATGAAACGAGAGACTCTTAACAAAAACTAC
GAAAATGCGCGGATGTTGCCTCAAGTAAAGACCCAAAAAGATTGTTGTGAGGTTACACAATCCAATGGAATTGGGAGTTT
TCTCAATACCATGAAAAAAT--TATCTTGAAAAATCCAGATCTATGGTATGGTATGGCAG-----AAATGAAGAAATCCG
ATACCAATGTTTGACGTGAAATATTCCCTCAAAGTCAAGTAATGCAAGAATAATCATTTCTTACTAAAGCTTAGTTGCGA
CGCTTACTAATTAATTAATTAATTAATTAATGCTCTGGGAATGAAGGACGCACGATGCATCGCAGCAG-----ACGCAGA
AAGCTGGTGATCATAACCCTACGCGGCTACGCTCAT------GGAGCCTGATAGCGTTGCTGACGCGTCGCCACGGTCAT
GGAACCGGC------------------------------CATTTTACCCGTACGGAGACCGTACCAGTATATATAGCACC
AACACCCACGCGGCACACCATGCCCATCAACCATCAAGGCAATAATCCACGTGAGATTGCAAGCACTTCACCAGCAAAAC
ACGTACTAGAGGTTACAGAGAAGCCAGCA---GCAAGCAAGATTGAGCGTTCACGGATGGTGGCCGAGGCCGTGGCGCAG
GCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGAAAGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGC
GGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCCGCGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGG
ACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCCGCTGGAGACGACGGCGGAGCGGCCGGAGG---CGACGACGAGGAG
GAGGAGGTGAGGCGGCGGTGCCTGAGGGAGGCGTTCGCGATGTACGCGACGGGAGCCGGCGAGG---AGGGCGCCAGGAT
CACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGGTCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGA
TCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAAGGG
GTGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACATGTGATTGCAGTTTCA
T--ATGATGGACGTTTCAATTGTATGTTGGGGCTTGGGTGTGATGCTTAAATTTCAAGTTTTCTTCTTTTTCTTTTCAGT
TTTGATGATGATGAAGAGAAGTTGACGGTGTCATGTTGTAAATAAGCGCATACCTCTTCCTATTTGAC-----CTGTAGT
TTATTGATAAGAATCTTGTTTGTGATTATTTTAAGCAAATGGTAAACCCTCTGTTGACATTATGTTTTACATAAATAATA
AAGGATATTGGCGCCACATGTTGGCCTTCATGCGGCGACCCACTTCCTTCTCTCCTTTGCATCAACAATGATTTAATGTT
TGAATTTTCAAAAGTTTATCTCTCAAACATTTCATCATTACCTTCATCACGGTGAGATCTTTGAAACTAAATCCCGTGTC
AACATGATTTGATTACTTTTTTGTCGGTATTTGCCACAGTACTATGACTACTTACCATGCTATTACTTATTGATAACAAC
TATTGCCGTAACTATACACAAACTATGTGACAAACGTTCACACTTAAAAATGGTAATATATGATGACATAATCTGGCAAC
TGGTGCCGACAAAAGAAATTACTGAAACATGTCAACGTGAGATGTTGCTTCAAAGCCCTCATGGAGGAGAACCCAGCGGT
GAAAGAAAGGTCGCTAATCGAACTAATGGTTTGCGAGATACTAC
>chr5B_1
GAATCATAAAGTAAGAGTAAATGTCAAAAAAAAAAGTTGAGGAAATAAAGCGTGGTAAAGTCTAGAACAATCGAGGAGTG
CCTTGGTTTGAGGTTTGTGCATATTATACATTGTAAATCGTAAAGTTAAGACATAATGATAATTCATTTAGTGAAAAAAG
AAGGCTTGGAGAACTTAAGCATGGAATACTCTAGAACAAAGAA---GTGCTTGTGTTTTGAGATTTGTATATTGTGCTTA
AGCTCTCAATCTTCAAGATAATACATATGGCAGAATTCGATGGGTGGAGATGATATTCAGTGACTAACAGTGCTTGGATT
TGTCACATTTGTACCATCATACTGGCCTCATCCAATGATCAATATTCAAAATTATTCGTAAACTATACAATGGTATAAAA
GTGTTACCTTGAAATGGAACCATGGCAAAACAGAACAAACTTGAAAACTACTAACCACATCCTCGAAATTTGGTCAAAAT
AATGATTTTTGACATGATCTTGAAAACAATGACCAACAGCATGGGAAAACATGAAATGAGAGACT-TTAACAAAAACTAC
CGAAATGCGTGGGTGTTGCCTCGAGTAAAGACGCAACAAGATTTCTGTGAGTTTACACAAACCAATGGCATTGGGAATTT
TCTCAATACCATGAAAAAATGATCTCTAAAAAAATCCAAATCTATAGTATAGTATGGTATAGCAAAAATGAAGAAATCCG
ATACCAATGTTTGAC-------------------------------------------------TAAAACTTTGTTGTGA
CGC-------TTAATTAATTAATTAATTAATGCACTGGGAATGAAGGACGCACGATGCATCGCAGT-CGCAGCACACAGA
AAGCTGGTGATAACCCTA-----CGGCTACGCGCATATCCAGGGAACCTGATAGCGTTGCTGACGCGTCGCCACGGTCAT
GGAACCGGC------------------------------CATTTTACCCGTACAGAGACCGTACCAGTATATATAGCACC
AACACCCACGCGGCACACCATGTCCATCAACCATCAATGCAATAATCCACGTACGGTTGTGAGCGGTTCACCAGCAAGAT
ACA---TAGAGGTTACAGAGAAGCCAGCAGCAGCAAGCAAGATTGAGCATTCACGGATGGTGGCCGGGGCCGTGGTGCAG
GCGTCATCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGCAAGGTGTCGGCCGCCGAGCTGCGCGGCTCCATGACGGC
GGCGCTGGGCGAGGAGGTTTCCGAGGAGGAGGCCGCGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGG
ACCAGGAGGAGTTCTCCCGGCTCGGGCTCGGCGCCGCCGGAGACAACGGTGGGGCGGCCGGAGACGACGACGAC------
GACGAGGTGAGGCGGCGGTGCCTGAAGGAGGCGTTCGCCATGTACGCGACGGGGGGCGGCGAGGAG---GGCGCCAGGAT
CACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGGTCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGA
TCTGCAGGTTTGACCTCAACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAAAGG
AAGGATGGTTTCATTTCATTCGTTCGCTTTTCTCTTCTGTATTTT-----------------------------------
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-----------------------------------------------------------TGACATGTGGTTGCAGTTGTT
CACATGATGGACGTTTCAATTGTATGTTGAGGCTTGGGTGTGATGCTTAAATTTCAAGTTTTCTTCTTTTTCTTTTCAGT
TTT---GATGATGAAGAGAAGTTGAGGGTGTCATGTTGTAAATAAGCTCATACCTCTTCCTATTTGACATCTACTGTAGT
TCATTGATAACAATCTGGTTCATGATTATTTTAAGCAAATGGTAAACCCTCCGTTGACATTTTTTTTGGAACAAATAATA
AAGGATATTGGCCTGC-----------TCATGGGGCGGCTCACTTCCTTCTCCCCTTTGCATGCAACAAT----------
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>chr5A_1
GAATCATAAAGTAAGAGTAAATGTCAAAAAAAAA---TGACGAAATAAAGTGTGGTAAAGTCTAGAACAACCGAGGAGTG
CCTTGGTTTGAGGTTTGTGCATATTATACATTGTAAACCATAAAGTTAAAACATAATGATAATTCATTTAGTGACAAAAG
AAGGCTTGGAGAACTTAAGCATGGAATACTCTAAAACAAAGAA---GTGTTTGTGTTTTGAGATTTGTACATTGTGCTTA
AGCTCTCAATCTTCAAGATAATACATATGGCAGAATTCGATGGATGGAGATGATATTCAATGACTAATAGTGATTGGATT
TGTCACATTTGTACCATCATACTGGCCTCATCCAGTGATCAATATTCAAAATTATCCATACATTATATAATGGTATAAAA
GTGTTACCCTCAAATGGAACCATGGCAAAACAGAAGAAACTTGGAAAGTACTAACCACATCCTCGAAATTTGGTCAAAAT
AATGATTTTGGACACAATCTTGAAAACAATGACC--CATCATGGGAAAGCATGAAACGAGAGACTCTTAACAGAA-----
---------------TTGCCTTAAGTAAAGACCCAAAAAGATTTCTGTGAGTTTTCACAAACCAATGGTATTGGGAATTT
TCTCAATACCATGAAAAAATGATCTCTAAAAAAACCCAAATATATAGTATAGTAT-----AGCAAAAATAAAGAAATTCG
ATACCAATGTTTGACGTGAAATATTCCCTCGAAGTCAAGTAATGCAAAAATAATCATTTTGTACTAGAGCTTTGTTGTGA
CGC-------TTAATTAATTAATTAAC----GCACTGGGAATGAAGGACGCACGATGCATCGCAGTTCGCAGCACACAGA
AAGCTGCTGGTAACCCTA-----CGGCTACGCGCATATCCACGGAACCTGATAGCGTTGCTGACGCGTTGCCACGGTCAC
GGAGAAGGTTCTAAGCCTGAACTCTCTGGAATTATTTGACATTCTGCCCGTACAGGGCCCGTACCAGCATATATAGCATC
AACACCCATGCGCCACACCATGTCCATCAAGCCACGTGATA----------TAAGGTTGTGAGCAGTTCACCAGCAAGAT
ACA---TAGAGGTCACAGAGAAGCCAGCA--AGCAAACAAGATTGAGCATTCACGGATGGTGGCCGAGGCCGTGGCGCAG
GCGTCGTCGGTGTTCGCCGCCTTCGACAAGGACGGCGACGGCAAGGTGTCGGCGGCCGAGCTGCGCGGCTCCATGACGGC
GGCGCTGGGCGAGGAGGTGTCCGAGGAGGAGGCGGCGGCGATCCTGGCCACGGTGGACGCCGACGGCGACGGGCTGCTGG
ACCAGGAGGAGTTCTCCCGGATCGGCCTCGCCGCCGCCGGAGACGACGGTGGGGCGGCCGGAGG---CGACGAC------
GAGGAGGTGAGGCGGCGGTGCCTAAGGGAGGCGTTCGCGATGTACGCGACGGGGGGCGGCGAGGAGCAGGGCGCCAGGAT
CACGCCGGCGAGCCTGAGGCGGATGCTGGGCAAGCTGCTGGGGGCCGAGAAGATGGGGCTGGAGGAGTGCAGGGCCATGA
TCTGCAGGTTCGACCTCAACGGCGACGGCGTCCTCTCCTTCGACGAGTTCAGGGTCATGATGATGGCCAATTTGTAA---
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>SNPs
--------------------------------SS-SS------------------------------------------S
-S-----------------------------------------------------------------------------S
S-S-SS----------------------S--------------SSS----------------------------------
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--------------------------------------------------S--------------------------S--
---------------S----SS---------------S--------------------------S---------------
----------------------S---------------S-----------------------------------------
SS-------S--S------------------------------SS------S--------S-------S-------S---
-----------------------S---SS---------S------S----S------S-S--------------------
------------------------------S----------------S-----------SS-----------S----S--
---SSSSSSS-----------------------S-------------------------------SSS-------S----
-----------S-SSSSSSSSSS---------S------------S----------------------------------
-----------------------------------------------------S--------------------------
----------------------S-----------------------------S--S---SS----S-----------S-S
--SSSS------------------------------------------S-------------------------------
-----------------------------------------S--------------------------------------
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-------------------------------------S-----------S--S---------------------SSSSSS
-----------------------------------------------------S-S------------------------
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-----------------------------------------------------------------------------S--
SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--------SSS
S----------------------------S--------------------------------------------------
---SSS-------------------S---------------------S--------------------------------
-S--------S-----S---SS-----------------------------S---------S-S---SSS-S--------
------------SSSSSSSSSSSSSSS-----S----S-S------------S---------SS-SS-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_892
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------------------------------------------------------------------------GACGCAGA
AAGCTGGTGATC--------------------------------------------------------------------
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>reverse_2618
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---------------------------------------------------------CTCATGGAGGAGAACCCAGC---
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