Multiple sequence alignment - TraesCS5D01G156800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G156800 chr5D 100.000 2681 0 0 1 2681 244642441 244639761 0.000000e+00 4951.0
1 TraesCS5D01G156800 chr5D 78.643 398 67 11 2285 2678 474701009 474701392 5.730000e-62 248.0
2 TraesCS5D01G156800 chr5D 81.567 217 35 5 2435 2649 244363309 244363522 9.870000e-40 174.0
3 TraesCS5D01G156800 chr5A 93.116 1104 25 8 655 1726 328925424 328924340 0.000000e+00 1570.0
4 TraesCS5D01G156800 chr5A 82.000 800 104 16 1840 2609 328924339 328923550 0.000000e+00 643.0
5 TraesCS5D01G156800 chr5A 83.253 621 63 9 1 614 328927529 328926943 1.410000e-147 532.0
6 TraesCS5D01G156800 chr5A 80.205 293 52 6 2360 2649 509719314 509719603 5.810000e-52 215.0
7 TraesCS5D01G156800 chr5B 91.691 1011 37 4 735 1726 278044731 278043749 0.000000e+00 1358.0
8 TraesCS5D01G156800 chr5B 89.252 214 12 6 1899 2110 278043713 278043509 9.520000e-65 257.0
9 TraesCS5D01G156800 chr5B 78.426 394 78 7 2284 2673 462838177 462838567 1.590000e-62 250.0
10 TraesCS5D01G156800 chr5B 86.207 116 13 3 1723 1836 669213227 669213341 3.620000e-24 122.0
11 TraesCS5D01G156800 chr5B 85.437 103 12 3 1739 1839 402870280 402870179 1.310000e-18 104.0
12 TraesCS5D01G156800 chr5B 100.000 35 0 0 1840 1874 278043748 278043714 6.200000e-07 65.8
13 TraesCS5D01G156800 chr3A 77.384 367 71 12 2310 2673 481083447 481083804 9.730000e-50 207.0
14 TraesCS5D01G156800 chr4B 77.112 367 73 6 2285 2649 406455840 406456197 4.530000e-48 202.0
15 TraesCS5D01G156800 chr4B 86.000 100 11 3 1739 1836 243726656 243726754 1.310000e-18 104.0
16 TraesCS5D01G156800 chr1B 81.377 247 33 7 2429 2673 666561858 666561623 3.520000e-44 189.0
17 TraesCS5D01G156800 chr7A 81.166 223 36 4 2457 2678 603289627 603289844 9.870000e-40 174.0
18 TraesCS5D01G156800 chr7A 90.000 120 9 2 1723 1839 496091535 496091416 4.620000e-33 152.0
19 TraesCS5D01G156800 chr7A 82.759 116 18 2 1723 1836 653631154 653631269 4.720000e-18 102.0
20 TraesCS5D01G156800 chr2B 77.695 269 45 12 2420 2678 40300531 40300794 1.660000e-32 150.0
21 TraesCS5D01G156800 chr3D 87.719 114 13 1 1724 1836 68272420 68272307 6.020000e-27 132.0
22 TraesCS5D01G156800 chr3D 86.555 119 12 4 1721 1836 442798918 442799035 7.790000e-26 128.0
23 TraesCS5D01G156800 chr3B 91.860 86 5 2 1739 1822 512741920 512742005 4.690000e-23 119.0
24 TraesCS5D01G156800 chrUn 82.203 118 19 2 1721 1836 21612555 21612672 1.700000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G156800 chr5D 244639761 244642441 2680 True 4951.000000 4951 100.000000 1 2681 1 chr5D.!!$R1 2680
1 TraesCS5D01G156800 chr5A 328923550 328927529 3979 True 915.000000 1570 86.123000 1 2609 3 chr5A.!!$R1 2608
2 TraesCS5D01G156800 chr5B 278043509 278044731 1222 True 560.266667 1358 93.647667 735 2110 3 chr5B.!!$R2 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.109532 TTTCCTGGTGGCATTGACGA 59.89 50.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 3369 0.249073 ATGGTGTCTCGTATGCTCGC 60.249 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.754965 AGTGAAGTTTGGCATTCTAGCA 58.245 40.909 0.00 0.00 35.83 3.49
34 35 0.321122 GGCATTCTAGCATCGGGGAG 60.321 60.000 0.00 0.00 35.83 4.30
53 54 4.393155 ATGCTGCCGGCGTTCTCA 62.393 61.111 23.90 14.67 45.43 3.27
62 63 2.870372 GCGTTCTCAAGCGGCATT 59.130 55.556 1.45 0.00 0.00 3.56
71 72 1.067199 CAAGCGGCATTTTCGAGTGC 61.067 55.000 1.45 10.06 40.55 4.40
145 146 3.922171 TTTTGTTTTCCTGGTGGCATT 57.078 38.095 0.00 0.00 0.00 3.56
146 147 2.906691 TTGTTTTCCTGGTGGCATTG 57.093 45.000 0.00 0.00 0.00 2.82
147 148 2.079170 TGTTTTCCTGGTGGCATTGA 57.921 45.000 0.00 0.00 0.00 2.57
148 149 1.686052 TGTTTTCCTGGTGGCATTGAC 59.314 47.619 0.00 0.00 0.00 3.18
149 150 0.958091 TTTTCCTGGTGGCATTGACG 59.042 50.000 0.00 0.00 0.00 4.35
150 151 0.109532 TTTCCTGGTGGCATTGACGA 59.890 50.000 0.00 0.00 0.00 4.20
151 152 0.109532 TTCCTGGTGGCATTGACGAA 59.890 50.000 0.00 0.00 0.00 3.85
152 153 0.321564 TCCTGGTGGCATTGACGAAG 60.322 55.000 0.00 0.00 0.00 3.79
168 169 4.478206 ACGAAGTGATGAAGATGATGGT 57.522 40.909 0.00 0.00 42.51 3.55
169 170 4.186926 ACGAAGTGATGAAGATGATGGTG 58.813 43.478 0.00 0.00 42.51 4.17
170 171 4.186926 CGAAGTGATGAAGATGATGGTGT 58.813 43.478 0.00 0.00 0.00 4.16
171 172 4.033702 CGAAGTGATGAAGATGATGGTGTG 59.966 45.833 0.00 0.00 0.00 3.82
172 173 3.276857 AGTGATGAAGATGATGGTGTGC 58.723 45.455 0.00 0.00 0.00 4.57
200 201 0.780637 AGGTCTCTCTGTCACCTCCA 59.219 55.000 0.00 0.00 35.47 3.86
210 211 0.381089 GTCACCTCCATACCTCGACG 59.619 60.000 0.00 0.00 0.00 5.12
211 212 0.750546 TCACCTCCATACCTCGACGG 60.751 60.000 0.00 0.03 39.35 4.79
213 214 2.331805 CTCCATACCTCGACGGCG 59.668 66.667 2.87 2.87 35.61 6.46
215 216 2.025727 CCATACCTCGACGGCGTC 59.974 66.667 29.06 29.06 38.98 5.19
228 229 3.043121 GCGTCCGGTTTGGCGTTA 61.043 61.111 0.00 0.00 38.82 3.18
230 231 1.373246 CGTCCGGTTTGGCGTTAGA 60.373 57.895 0.00 0.00 37.80 2.10
257 258 2.884639 GCATGTGAAGGTAGGTGTTGTT 59.115 45.455 0.00 0.00 0.00 2.83
259 260 3.916359 TGTGAAGGTAGGTGTTGTTGA 57.084 42.857 0.00 0.00 0.00 3.18
261 262 3.942748 TGTGAAGGTAGGTGTTGTTGAAC 59.057 43.478 0.00 0.00 0.00 3.18
278 279 7.455641 TGTTGAACTTTGTTGGTTCTCTTTA 57.544 32.000 0.00 0.00 42.27 1.85
279 280 7.887381 TGTTGAACTTTGTTGGTTCTCTTTAA 58.113 30.769 0.00 0.00 42.27 1.52
294 295 8.070769 GGTTCTCTTTAAATCTTGACAGTTGAC 58.929 37.037 0.00 0.00 0.00 3.18
332 333 4.307032 ACAGTTGGTTGGCTCTTGATAT 57.693 40.909 0.00 0.00 0.00 1.63
333 334 4.012374 ACAGTTGGTTGGCTCTTGATATG 58.988 43.478 0.00 0.00 0.00 1.78
338 339 1.599542 GTTGGCTCTTGATATGGCGAC 59.400 52.381 0.00 0.00 34.38 5.19
347 348 0.250338 GATATGGCGACTTGGACCCC 60.250 60.000 0.00 0.00 0.00 4.95
348 349 0.986019 ATATGGCGACTTGGACCCCA 60.986 55.000 0.00 0.00 0.00 4.96
363 364 3.509967 GGACCCCATCTTTCGATTTGTTT 59.490 43.478 0.00 0.00 0.00 2.83
398 399 2.482142 GCTTCATCCAACCCTCTAGACG 60.482 54.545 0.00 0.00 0.00 4.18
409 410 3.244112 ACCCTCTAGACGGTTGTTCAAAG 60.244 47.826 7.54 0.00 0.00 2.77
418 419 7.272037 AGACGGTTGTTCAAAGATTGTAAAT 57.728 32.000 0.00 0.00 0.00 1.40
433 434 3.605634 TGTAAATCTGCATTGCGTAGGT 58.394 40.909 3.84 0.00 0.00 3.08
442 443 2.541588 GCATTGCGTAGGTTAATGCCAG 60.542 50.000 19.67 0.03 46.66 4.85
469 470 8.895932 ACTAATGTTCTTCATCGTTTATTTGC 57.104 30.769 0.00 0.00 35.48 3.68
470 471 8.511321 ACTAATGTTCTTCATCGTTTATTTGCA 58.489 29.630 0.00 0.00 35.48 4.08
471 472 7.801547 AATGTTCTTCATCGTTTATTTGCAG 57.198 32.000 0.00 0.00 35.48 4.41
472 473 5.698832 TGTTCTTCATCGTTTATTTGCAGG 58.301 37.500 0.00 0.00 0.00 4.85
473 474 4.963276 TCTTCATCGTTTATTTGCAGGG 57.037 40.909 0.00 0.00 0.00 4.45
485 486 7.379529 CGTTTATTTGCAGGGATGATTATTGTC 59.620 37.037 0.00 0.00 0.00 3.18
508 509 4.299155 TCTTCAAAGACTGACATGACGAC 58.701 43.478 0.00 0.00 32.21 4.34
509 510 3.726291 TCAAAGACTGACATGACGACA 57.274 42.857 0.00 0.00 0.00 4.35
520 521 3.395639 ACATGACGACAATGTTTACGGT 58.604 40.909 0.00 0.00 0.00 4.83
521 522 3.185594 ACATGACGACAATGTTTACGGTG 59.814 43.478 0.00 0.00 0.00 4.94
522 523 2.823984 TGACGACAATGTTTACGGTGT 58.176 42.857 0.00 0.00 0.00 4.16
523 524 2.796031 TGACGACAATGTTTACGGTGTC 59.204 45.455 0.00 5.95 37.59 3.67
524 525 3.054878 GACGACAATGTTTACGGTGTCT 58.945 45.455 11.55 2.84 38.57 3.41
527 528 4.333372 ACGACAATGTTTACGGTGTCTTTT 59.667 37.500 11.55 0.00 38.57 2.27
556 557 9.590451 CCTATTGTTGATTCAGTGCATATTTTT 57.410 29.630 0.00 0.00 0.00 1.94
559 560 7.872163 TGTTGATTCAGTGCATATTTTTGAC 57.128 32.000 0.00 0.00 0.00 3.18
560 561 6.581919 TGTTGATTCAGTGCATATTTTTGACG 59.418 34.615 0.00 0.00 0.00 4.35
561 562 6.493449 TGATTCAGTGCATATTTTTGACGA 57.507 33.333 0.00 0.00 0.00 4.20
562 563 6.907741 TGATTCAGTGCATATTTTTGACGAA 58.092 32.000 0.00 0.00 0.00 3.85
563 564 7.537715 TGATTCAGTGCATATTTTTGACGAAT 58.462 30.769 0.00 0.00 0.00 3.34
593 600 9.020813 GTACAATCAAAGAAGAAGAAAACCAAC 57.979 33.333 0.00 0.00 0.00 3.77
602 609 8.534333 AGAAGAAGAAAACCAACTTTGTTTTC 57.466 30.769 17.57 17.57 43.45 2.29
603 610 6.944557 AGAAGAAAACCAACTTTGTTTTCG 57.055 33.333 18.51 0.00 45.98 3.46
606 613 6.460664 AGAAAACCAACTTTGTTTTCGTTG 57.539 33.333 18.51 5.08 45.98 4.10
608 615 7.146648 AGAAAACCAACTTTGTTTTCGTTGTA 58.853 30.769 18.51 0.00 45.98 2.41
609 616 7.652507 AGAAAACCAACTTTGTTTTCGTTGTAA 59.347 29.630 18.51 0.00 45.98 2.41
610 617 7.892778 AAACCAACTTTGTTTTCGTTGTAAT 57.107 28.000 0.00 0.00 37.04 1.89
611 618 7.892778 AACCAACTTTGTTTTCGTTGTAATT 57.107 28.000 0.00 0.00 37.04 1.40
612 619 7.892778 ACCAACTTTGTTTTCGTTGTAATTT 57.107 28.000 0.00 0.00 37.04 1.82
613 620 8.312896 ACCAACTTTGTTTTCGTTGTAATTTT 57.687 26.923 0.00 0.00 37.04 1.82
614 621 9.420551 ACCAACTTTGTTTTCGTTGTAATTTTA 57.579 25.926 0.00 0.00 37.04 1.52
653 660 7.752239 GTCATTTTGTGTCTTGATGTATTCCAG 59.248 37.037 0.00 0.00 0.00 3.86
668 2174 2.465860 TCCAGTTGTATGGACCGTTG 57.534 50.000 0.00 0.00 44.56 4.10
685 2191 6.197655 GGACCGTTGTTTTTCTTGACAATTAC 59.802 38.462 0.00 0.00 37.98 1.89
687 2193 7.987649 ACCGTTGTTTTTCTTGACAATTACTA 58.012 30.769 0.00 0.00 37.98 1.82
716 2230 7.816244 AAAGTACCATCTTTACCTACCGGAGG 61.816 46.154 9.46 13.70 44.17 4.30
753 2267 5.413833 AGTCTTGTATTTCACCAGCAATCTG 59.586 40.000 0.00 0.00 40.02 2.90
762 2276 4.005650 TCACCAGCAATCTGAAACTGATC 58.994 43.478 6.54 0.00 42.95 2.92
857 2373 1.126846 GAGACAGAAATGTCAACGCGG 59.873 52.381 12.47 0.00 41.02 6.46
858 2374 1.144969 GACAGAAATGTCAACGCGGA 58.855 50.000 12.47 0.00 38.59 5.54
859 2375 1.126846 GACAGAAATGTCAACGCGGAG 59.873 52.381 12.47 1.53 38.59 4.63
860 2376 0.443869 CAGAAATGTCAACGCGGAGG 59.556 55.000 12.47 0.00 0.00 4.30
902 2418 2.805353 CGAGGCTGACCGTTGACG 60.805 66.667 0.00 0.00 42.76 4.35
980 2496 7.070074 TCCTAAACATTCTTCTCTCCCAGATAC 59.930 40.741 0.00 0.00 0.00 2.24
1038 2576 2.829458 CTCCTCCCCGTCTCCGTC 60.829 72.222 0.00 0.00 0.00 4.79
1726 3264 8.253810 TCGACTGATTCATTCTTGAGAAATACT 58.746 33.333 0.00 0.00 37.61 2.12
1727 3265 8.877779 CGACTGATTCATTCTTGAGAAATACTT 58.122 33.333 0.00 0.00 37.61 2.24
1729 3267 9.730705 ACTGATTCATTCTTGAGAAATACTTCA 57.269 29.630 0.00 0.00 37.61 3.02
1732 3270 9.861138 GATTCATTCTTGAGAAATACTTCATCG 57.139 33.333 0.00 0.00 37.61 3.84
1733 3271 7.776933 TCATTCTTGAGAAATACTTCATCGG 57.223 36.000 0.00 0.00 37.61 4.18
1734 3272 7.331026 TCATTCTTGAGAAATACTTCATCGGT 58.669 34.615 0.00 0.00 37.61 4.69
1735 3273 7.824289 TCATTCTTGAGAAATACTTCATCGGTT 59.176 33.333 0.00 0.00 37.61 4.44
1736 3274 7.596749 TTCTTGAGAAATACTTCATCGGTTC 57.403 36.000 0.00 0.00 33.64 3.62
1737 3275 6.936279 TCTTGAGAAATACTTCATCGGTTCT 58.064 36.000 0.00 0.00 33.64 3.01
1738 3276 8.063200 TCTTGAGAAATACTTCATCGGTTCTA 57.937 34.615 0.00 0.00 33.64 2.10
1739 3277 8.528643 TCTTGAGAAATACTTCATCGGTTCTAA 58.471 33.333 0.00 0.00 33.64 2.10
1740 3278 9.151471 CTTGAGAAATACTTCATCGGTTCTAAA 57.849 33.333 0.00 0.00 33.64 1.85
1741 3279 9.667107 TTGAGAAATACTTCATCGGTTCTAAAT 57.333 29.630 0.00 0.00 33.64 1.40
1742 3280 9.667107 TGAGAAATACTTCATCGGTTCTAAATT 57.333 29.630 0.00 0.00 33.64 1.82
1748 3286 9.886132 ATACTTCATCGGTTCTAAATTACTTGT 57.114 29.630 0.00 0.00 0.00 3.16
1749 3287 8.252964 ACTTCATCGGTTCTAAATTACTTGTC 57.747 34.615 0.00 0.00 0.00 3.18
1750 3288 6.880822 TCATCGGTTCTAAATTACTTGTCG 57.119 37.500 0.00 0.00 0.00 4.35
1751 3289 6.623486 TCATCGGTTCTAAATTACTTGTCGA 58.377 36.000 0.00 0.00 0.00 4.20
1752 3290 7.092079 TCATCGGTTCTAAATTACTTGTCGAA 58.908 34.615 0.00 0.00 0.00 3.71
1753 3291 6.939551 TCGGTTCTAAATTACTTGTCGAAG 57.060 37.500 0.00 0.00 35.07 3.79
1754 3292 5.865552 TCGGTTCTAAATTACTTGTCGAAGG 59.134 40.000 0.00 0.00 32.95 3.46
1755 3293 5.865552 CGGTTCTAAATTACTTGTCGAAGGA 59.134 40.000 0.00 0.00 32.95 3.36
1756 3294 6.366877 CGGTTCTAAATTACTTGTCGAAGGAA 59.633 38.462 0.00 0.00 36.40 3.36
1757 3295 7.064253 CGGTTCTAAATTACTTGTCGAAGGAAT 59.936 37.037 0.00 0.00 43.61 3.01
1763 3301 7.687941 AATTACTTGTCGAAGGAATTGATGT 57.312 32.000 6.52 0.00 46.79 3.06
1764 3302 8.786826 AATTACTTGTCGAAGGAATTGATGTA 57.213 30.769 6.52 0.00 46.79 2.29
1765 3303 8.964476 ATTACTTGTCGAAGGAATTGATGTAT 57.036 30.769 0.00 0.00 39.39 2.29
1766 3304 6.910536 ACTTGTCGAAGGAATTGATGTATC 57.089 37.500 0.00 0.00 32.95 2.24
1767 3305 6.644347 ACTTGTCGAAGGAATTGATGTATCT 58.356 36.000 0.00 0.00 32.95 1.98
1768 3306 7.782049 ACTTGTCGAAGGAATTGATGTATCTA 58.218 34.615 0.00 0.00 32.95 1.98
1769 3307 7.923344 ACTTGTCGAAGGAATTGATGTATCTAG 59.077 37.037 0.00 0.00 32.95 2.43
1770 3308 7.582667 TGTCGAAGGAATTGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
1771 3309 7.426410 TGTCGAAGGAATTGATGTATCTAGAC 58.574 38.462 0.00 0.00 0.00 2.59
1772 3310 6.579292 GTCGAAGGAATTGATGTATCTAGACG 59.421 42.308 0.00 0.00 0.00 4.18
1773 3311 6.262496 TCGAAGGAATTGATGTATCTAGACGT 59.738 38.462 0.00 0.00 0.00 4.34
1774 3312 7.443272 TCGAAGGAATTGATGTATCTAGACGTA 59.557 37.037 0.00 0.00 0.00 3.57
1775 3313 8.237949 CGAAGGAATTGATGTATCTAGACGTAT 58.762 37.037 0.00 0.00 0.00 3.06
1776 3314 9.915629 GAAGGAATTGATGTATCTAGACGTATT 57.084 33.333 0.00 0.00 0.00 1.89
1811 3349 9.046296 AGATACATCTAACTTTATCCTTTTGCG 57.954 33.333 0.00 0.00 34.85 4.85
1812 3350 8.958119 ATACATCTAACTTTATCCTTTTGCGA 57.042 30.769 0.00 0.00 0.00 5.10
1813 3351 7.073342 ACATCTAACTTTATCCTTTTGCGAC 57.927 36.000 0.00 0.00 0.00 5.19
1814 3352 6.653320 ACATCTAACTTTATCCTTTTGCGACA 59.347 34.615 0.00 0.00 0.00 4.35
1815 3353 7.174253 ACATCTAACTTTATCCTTTTGCGACAA 59.826 33.333 0.00 0.00 0.00 3.18
1816 3354 6.894828 TCTAACTTTATCCTTTTGCGACAAC 58.105 36.000 0.00 0.00 0.00 3.32
1817 3355 5.767816 AACTTTATCCTTTTGCGACAACT 57.232 34.783 0.00 0.00 0.00 3.16
1818 3356 6.870971 AACTTTATCCTTTTGCGACAACTA 57.129 33.333 0.00 0.00 0.00 2.24
1819 3357 6.870971 ACTTTATCCTTTTGCGACAACTAA 57.129 33.333 0.00 0.00 0.00 2.24
1820 3358 7.448748 ACTTTATCCTTTTGCGACAACTAAT 57.551 32.000 0.00 0.00 0.00 1.73
1821 3359 7.882179 ACTTTATCCTTTTGCGACAACTAATT 58.118 30.769 0.00 0.00 0.00 1.40
1822 3360 8.021396 ACTTTATCCTTTTGCGACAACTAATTC 58.979 33.333 0.00 0.00 0.00 2.17
1823 3361 4.759516 TCCTTTTGCGACAACTAATTCC 57.240 40.909 0.00 0.00 0.00 3.01
1824 3362 3.187637 TCCTTTTGCGACAACTAATTCCG 59.812 43.478 0.00 0.00 0.00 4.30
1825 3363 3.187637 CCTTTTGCGACAACTAATTCCGA 59.812 43.478 0.00 0.00 0.00 4.55
1826 3364 4.319911 CCTTTTGCGACAACTAATTCCGAA 60.320 41.667 0.00 0.00 0.00 4.30
1827 3365 3.799137 TTGCGACAACTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
1828 3366 2.070783 TGCGACAACTAATTCCGAACC 58.929 47.619 0.00 0.00 0.00 3.62
1829 3367 1.060122 GCGACAACTAATTCCGAACCG 59.940 52.381 0.00 0.00 0.00 4.44
1830 3368 2.598589 CGACAACTAATTCCGAACCGA 58.401 47.619 0.00 0.00 0.00 4.69
1831 3369 2.597305 CGACAACTAATTCCGAACCGAG 59.403 50.000 0.00 0.00 0.00 4.63
1832 3370 2.344025 ACAACTAATTCCGAACCGAGC 58.656 47.619 0.00 0.00 0.00 5.03
1833 3371 1.323534 CAACTAATTCCGAACCGAGCG 59.676 52.381 0.00 0.00 0.00 5.03
1834 3372 0.813184 ACTAATTCCGAACCGAGCGA 59.187 50.000 0.00 0.00 0.00 4.93
1835 3373 1.202268 ACTAATTCCGAACCGAGCGAG 60.202 52.381 0.00 0.00 0.00 5.03
1836 3374 0.526954 TAATTCCGAACCGAGCGAGC 60.527 55.000 0.00 0.00 0.00 5.03
1837 3375 2.501223 AATTCCGAACCGAGCGAGCA 62.501 55.000 0.00 0.00 0.00 4.26
1838 3376 2.298158 ATTCCGAACCGAGCGAGCAT 62.298 55.000 0.00 0.00 0.00 3.79
2113 3652 3.883489 GGTTTCTCATATGGTGTAAGGGC 59.117 47.826 2.13 0.00 0.00 5.19
2120 3670 2.143876 ATGGTGTAAGGGCATCCAAC 57.856 50.000 0.00 0.00 34.83 3.77
2123 3673 0.322187 GTGTAAGGGCATCCAACGGT 60.322 55.000 0.00 0.00 34.83 4.83
2139 3689 3.723348 GTGACGCTCAAACCGCCC 61.723 66.667 0.00 0.00 0.00 6.13
2145 3695 2.186826 GCTCAAACCGCCCGCATAT 61.187 57.895 0.00 0.00 0.00 1.78
2149 3701 0.525242 CAAACCGCCCGCATATGTTG 60.525 55.000 4.29 0.00 0.00 3.33
2150 3702 0.678366 AAACCGCCCGCATATGTTGA 60.678 50.000 4.29 0.00 0.00 3.18
2153 3705 1.224069 CCGCCCGCATATGTTGAGAG 61.224 60.000 4.29 0.00 0.00 3.20
2157 3709 1.655484 CCGCATATGTTGAGAGTGCA 58.345 50.000 4.29 0.00 35.63 4.57
2158 3710 1.328680 CCGCATATGTTGAGAGTGCAC 59.671 52.381 9.40 9.40 35.63 4.57
2164 3716 1.570813 TGTTGAGAGTGCACTGTTCG 58.429 50.000 27.27 0.00 0.00 3.95
2167 3719 0.750249 TGAGAGTGCACTGTTCGGAA 59.250 50.000 27.27 3.35 0.00 4.30
2170 3722 0.582005 GAGTGCACTGTTCGGAACAC 59.418 55.000 27.27 10.69 36.25 3.32
2184 3736 2.716398 GGAACACGAAAGCAGTTCAAC 58.284 47.619 0.00 0.00 45.56 3.18
2187 3739 1.062002 ACACGAAAGCAGTTCAACACG 59.938 47.619 0.00 0.00 35.83 4.49
2188 3740 0.655733 ACGAAAGCAGTTCAACACGG 59.344 50.000 0.00 0.00 35.83 4.94
2189 3741 0.655733 CGAAAGCAGTTCAACACGGT 59.344 50.000 0.00 0.00 35.83 4.83
2190 3742 1.332904 CGAAAGCAGTTCAACACGGTC 60.333 52.381 0.00 0.00 35.83 4.79
2191 3743 1.002792 GAAAGCAGTTCAACACGGTCC 60.003 52.381 0.00 0.00 36.15 4.46
2192 3744 0.180406 AAGCAGTTCAACACGGTCCT 59.820 50.000 0.00 0.00 0.00 3.85
2193 3745 1.045407 AGCAGTTCAACACGGTCCTA 58.955 50.000 0.00 0.00 0.00 2.94
2195 3747 2.829720 AGCAGTTCAACACGGTCCTATA 59.170 45.455 0.00 0.00 0.00 1.31
2197 3749 3.802685 GCAGTTCAACACGGTCCTATATC 59.197 47.826 0.00 0.00 0.00 1.63
2198 3750 4.042398 CAGTTCAACACGGTCCTATATCG 58.958 47.826 0.00 0.00 0.00 2.92
2199 3751 3.949754 AGTTCAACACGGTCCTATATCGA 59.050 43.478 0.00 0.00 0.00 3.59
2200 3752 4.583489 AGTTCAACACGGTCCTATATCGAT 59.417 41.667 2.16 2.16 0.00 3.59
2201 3753 4.761235 TCAACACGGTCCTATATCGATC 57.239 45.455 0.00 0.00 0.00 3.69
2202 3754 4.139038 TCAACACGGTCCTATATCGATCA 58.861 43.478 0.00 0.00 0.00 2.92
2203 3755 4.215613 TCAACACGGTCCTATATCGATCAG 59.784 45.833 0.00 0.00 0.00 2.90
2204 3756 2.488545 ACACGGTCCTATATCGATCAGC 59.511 50.000 0.00 0.00 0.00 4.26
2210 3762 3.441922 GTCCTATATCGATCAGCAGAGCA 59.558 47.826 0.00 0.00 0.00 4.26
2212 3764 3.443329 CCTATATCGATCAGCAGAGCAGT 59.557 47.826 0.00 0.00 0.00 4.40
2214 3766 1.401761 ATCGATCAGCAGAGCAGTCT 58.598 50.000 0.00 0.00 0.00 3.24
2215 3767 2.044123 TCGATCAGCAGAGCAGTCTA 57.956 50.000 0.00 0.00 0.00 2.59
2216 3768 2.369394 TCGATCAGCAGAGCAGTCTAA 58.631 47.619 0.00 0.00 0.00 2.10
2235 3787 5.023286 TCTAAACGTGTTTTCTTTCGCAAC 58.977 37.500 2.97 0.00 34.23 4.17
2236 3788 2.182904 ACGTGTTTTCTTTCGCAACC 57.817 45.000 0.00 0.00 0.00 3.77
2242 3794 0.107081 TTTCTTTCGCAACCCGGAGA 59.893 50.000 0.73 0.00 37.59 3.71
2243 3795 0.320421 TTCTTTCGCAACCCGGAGAG 60.320 55.000 0.73 0.00 37.59 3.20
2247 3799 0.323629 TTCGCAACCCGGAGAGAAAT 59.676 50.000 0.73 0.00 37.59 2.17
2248 3800 0.391130 TCGCAACCCGGAGAGAAATG 60.391 55.000 0.73 0.00 37.59 2.32
2251 3803 1.610624 GCAACCCGGAGAGAAATGTGA 60.611 52.381 0.73 0.00 0.00 3.58
2265 3817 0.188342 ATGTGAAGGGCTTTGTGGGT 59.812 50.000 0.00 0.00 0.00 4.51
2267 3819 0.467290 GTGAAGGGCTTTGTGGGTGA 60.467 55.000 0.00 0.00 0.00 4.02
2268 3820 0.482446 TGAAGGGCTTTGTGGGTGAT 59.518 50.000 0.00 0.00 0.00 3.06
2275 3827 1.890876 CTTTGTGGGTGATCGGACAA 58.109 50.000 0.00 0.00 0.00 3.18
2276 3828 1.535462 CTTTGTGGGTGATCGGACAAC 59.465 52.381 0.00 0.00 0.00 3.32
2283 3835 0.602638 GTGATCGGACAACTGCCACA 60.603 55.000 0.00 0.00 0.00 4.17
2300 3866 4.233558 ACCCTGCCCACCCAAACC 62.234 66.667 0.00 0.00 0.00 3.27
2310 3876 4.778143 CCCAAACCCGCTCCCTCG 62.778 72.222 0.00 0.00 0.00 4.63
2318 3884 2.202810 CGCTCCCTCGCCTTTCTC 60.203 66.667 0.00 0.00 0.00 2.87
2327 3893 2.383527 CGCCTTTCTCGCGCTTTCT 61.384 57.895 5.56 0.00 43.57 2.52
2338 3904 2.237751 CGCTTTCTATCCCACGCGG 61.238 63.158 12.47 0.00 37.25 6.46
2339 3905 1.153429 GCTTTCTATCCCACGCGGT 60.153 57.895 12.47 0.00 0.00 5.68
2340 3906 1.429148 GCTTTCTATCCCACGCGGTG 61.429 60.000 12.47 6.37 0.00 4.94
2366 3932 1.999735 CTTACCGCGTCACATTCATGT 59.000 47.619 4.92 0.00 42.84 3.21
2372 3938 0.729116 CGTCACATTCATGTCAGCCC 59.271 55.000 0.00 0.00 39.39 5.19
2387 3953 1.975407 GCCCAGAGCATGCAACAGT 60.975 57.895 21.98 0.00 42.97 3.55
2389 3955 1.642037 CCCAGAGCATGCAACAGTCG 61.642 60.000 21.98 4.84 0.00 4.18
2412 3979 0.957888 TTGATGCCCGCGATTTGACA 60.958 50.000 8.23 0.00 0.00 3.58
2415 3982 1.091771 ATGCCCGCGATTTGACAGAG 61.092 55.000 8.23 0.00 0.00 3.35
2416 3983 3.093278 CCCGCGATTTGACAGAGC 58.907 61.111 8.23 0.00 0.00 4.09
2445 4012 4.806571 GCAGATGGACGCGAACTA 57.193 55.556 15.93 4.64 0.00 2.24
2449 4016 2.120232 CAGATGGACGCGAACTATCAC 58.880 52.381 24.74 9.53 0.00 3.06
2452 4019 0.885879 TGGACGCGAACTATCACTGT 59.114 50.000 15.93 0.00 0.00 3.55
2454 4021 1.181001 GACGCGAACTATCACTGTCG 58.819 55.000 15.93 0.00 0.00 4.35
2464 4031 1.453155 ATCACTGTCGGCATTGAACC 58.547 50.000 14.32 0.00 37.73 3.62
2520 4087 2.435059 GGCTGAACACGCCTCCTC 60.435 66.667 0.00 0.00 44.17 3.71
2523 4090 4.373116 TGAACACGCCTCCTCGCC 62.373 66.667 0.00 0.00 0.00 5.54
2549 4116 0.470766 AAACGGTAACAGACTGCCCA 59.529 50.000 1.25 0.00 38.06 5.36
2565 4132 1.564348 GCCCACCTTCCTCCATTAAGA 59.436 52.381 0.00 0.00 0.00 2.10
2568 4135 2.092375 CCACCTTCCTCCATTAAGACCC 60.092 54.545 0.00 0.00 0.00 4.46
2573 4140 0.541863 CCTCCATTAAGACCCGCACT 59.458 55.000 0.00 0.00 0.00 4.40
2581 4148 2.280797 GACCCGCACTTGTGCTGA 60.281 61.111 21.17 0.00 0.00 4.26
2586 4153 0.662619 CCGCACTTGTGCTGAGAAAA 59.337 50.000 21.17 0.00 0.00 2.29
2587 4154 1.267806 CCGCACTTGTGCTGAGAAAAT 59.732 47.619 21.17 0.00 0.00 1.82
2596 4163 2.096013 GTGCTGAGAAAATTACTCCGGC 59.904 50.000 0.00 12.10 34.95 6.13
2599 4166 2.678336 CTGAGAAAATTACTCCGGCCAC 59.322 50.000 2.24 0.00 33.95 5.01
2605 4172 2.234913 ATTACTCCGGCCACACGTCC 62.235 60.000 2.24 0.00 0.00 4.79
2610 4177 4.007940 CGGCCACACGTCCGTTTG 62.008 66.667 2.24 0.00 40.72 2.93
2611 4178 4.322385 GGCCACACGTCCGTTTGC 62.322 66.667 0.00 0.00 0.00 3.68
2612 4179 4.659874 GCCACACGTCCGTTTGCG 62.660 66.667 0.64 0.00 37.95 4.85
2613 4180 2.962786 CCACACGTCCGTTTGCGA 60.963 61.111 0.64 0.00 41.33 5.10
2614 4181 2.544359 CACACGTCCGTTTGCGAG 59.456 61.111 0.00 0.00 41.33 5.03
2615 4182 3.335534 ACACGTCCGTTTGCGAGC 61.336 61.111 0.00 0.00 41.33 5.03
2616 4183 4.072088 CACGTCCGTTTGCGAGCC 62.072 66.667 0.00 0.00 41.33 4.70
2617 4184 4.595538 ACGTCCGTTTGCGAGCCA 62.596 61.111 0.00 0.00 41.33 4.75
2618 4185 4.072088 CGTCCGTTTGCGAGCCAC 62.072 66.667 0.00 0.00 41.33 5.01
2619 4186 3.723348 GTCCGTTTGCGAGCCACC 61.723 66.667 0.00 0.00 41.33 4.61
2623 4190 3.723348 GTTTGCGAGCCACCCGTC 61.723 66.667 0.00 0.00 0.00 4.79
2624 4191 4.243008 TTTGCGAGCCACCCGTCA 62.243 61.111 0.00 0.00 0.00 4.35
2625 4192 3.545124 TTTGCGAGCCACCCGTCAT 62.545 57.895 0.00 0.00 0.00 3.06
2626 4193 3.545124 TTGCGAGCCACCCGTCATT 62.545 57.895 0.00 0.00 0.00 2.57
2627 4194 2.173758 TTGCGAGCCACCCGTCATTA 62.174 55.000 0.00 0.00 0.00 1.90
2628 4195 1.448893 GCGAGCCACCCGTCATTAA 60.449 57.895 0.00 0.00 0.00 1.40
2629 4196 1.022451 GCGAGCCACCCGTCATTAAA 61.022 55.000 0.00 0.00 0.00 1.52
2630 4197 0.725117 CGAGCCACCCGTCATTAAAC 59.275 55.000 0.00 0.00 0.00 2.01
2631 4198 1.816074 GAGCCACCCGTCATTAAACA 58.184 50.000 0.00 0.00 0.00 2.83
2632 4199 1.737793 GAGCCACCCGTCATTAAACAG 59.262 52.381 0.00 0.00 0.00 3.16
2633 4200 1.349688 AGCCACCCGTCATTAAACAGA 59.650 47.619 0.00 0.00 0.00 3.41
2634 4201 2.156098 GCCACCCGTCATTAAACAGAA 58.844 47.619 0.00 0.00 0.00 3.02
2635 4202 2.554893 GCCACCCGTCATTAAACAGAAA 59.445 45.455 0.00 0.00 0.00 2.52
2636 4203 3.365969 GCCACCCGTCATTAAACAGAAAG 60.366 47.826 0.00 0.00 0.00 2.62
2637 4204 4.069304 CCACCCGTCATTAAACAGAAAGA 58.931 43.478 0.00 0.00 0.00 2.52
2638 4205 4.083484 CCACCCGTCATTAAACAGAAAGAC 60.083 45.833 0.00 0.00 0.00 3.01
2639 4206 4.755123 CACCCGTCATTAAACAGAAAGACT 59.245 41.667 0.00 0.00 0.00 3.24
2649 4216 2.260844 CAGAAAGACTGTTGGCTCCA 57.739 50.000 0.00 0.00 41.30 3.86
2650 4217 1.876156 CAGAAAGACTGTTGGCTCCAC 59.124 52.381 0.00 0.00 41.30 4.02
2651 4218 1.202818 AGAAAGACTGTTGGCTCCACC 60.203 52.381 0.00 0.00 39.84 4.61
2652 4219 0.178990 AAAGACTGTTGGCTCCACCC 60.179 55.000 0.00 0.00 37.83 4.61
2653 4220 2.034221 GACTGTTGGCTCCACCCC 59.966 66.667 0.00 0.00 37.83 4.95
2654 4221 3.569200 GACTGTTGGCTCCACCCCC 62.569 68.421 0.00 0.00 37.83 5.40
2679 4246 2.231235 CCCCCGCTATTTAAATGATGGC 59.769 50.000 11.05 8.57 0.00 4.40
2680 4247 2.890311 CCCCGCTATTTAAATGATGGCA 59.110 45.455 11.05 0.00 31.27 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.937620 TGCTAGAATGCCAAACTTCACTAG 59.062 41.667 0.00 0.00 0.00 2.57
6 7 4.666237 GATGCTAGAATGCCAAACTTCAC 58.334 43.478 0.00 0.00 0.00 3.18
18 19 1.002888 CATGCTCCCCGATGCTAGAAT 59.997 52.381 0.00 0.00 0.00 2.40
45 46 0.387239 AAAATGCCGCTTGAGAACGC 60.387 50.000 0.00 0.00 0.00 4.84
47 48 1.196808 TCGAAAATGCCGCTTGAGAAC 59.803 47.619 0.00 0.00 0.00 3.01
53 54 1.210155 GCACTCGAAAATGCCGCTT 59.790 52.632 4.95 0.00 35.73 4.68
57 58 2.253414 GACCCGCACTCGAAAATGCC 62.253 60.000 9.64 0.00 38.69 4.40
58 59 1.134694 GACCCGCACTCGAAAATGC 59.865 57.895 6.01 6.01 38.10 3.56
62 63 3.562779 GACGGACCCGCACTCGAAA 62.563 63.158 8.55 0.00 44.19 3.46
104 105 7.724061 ACAAAATCTAAGGAAAGCAAAGACCTA 59.276 33.333 0.00 0.00 32.06 3.08
109 110 8.551205 GGAAAACAAAATCTAAGGAAAGCAAAG 58.449 33.333 0.00 0.00 0.00 2.77
145 146 4.081476 ACCATCATCTTCATCACTTCGTCA 60.081 41.667 0.00 0.00 0.00 4.35
146 147 4.269603 CACCATCATCTTCATCACTTCGTC 59.730 45.833 0.00 0.00 0.00 4.20
147 148 4.186926 CACCATCATCTTCATCACTTCGT 58.813 43.478 0.00 0.00 0.00 3.85
148 149 4.033702 CACACCATCATCTTCATCACTTCG 59.966 45.833 0.00 0.00 0.00 3.79
149 150 4.201891 GCACACCATCATCTTCATCACTTC 60.202 45.833 0.00 0.00 0.00 3.01
150 151 3.693085 GCACACCATCATCTTCATCACTT 59.307 43.478 0.00 0.00 0.00 3.16
151 152 3.054582 AGCACACCATCATCTTCATCACT 60.055 43.478 0.00 0.00 0.00 3.41
152 153 3.064958 CAGCACACCATCATCTTCATCAC 59.935 47.826 0.00 0.00 0.00 3.06
153 154 3.275999 CAGCACACCATCATCTTCATCA 58.724 45.455 0.00 0.00 0.00 3.07
154 155 3.276857 ACAGCACACCATCATCTTCATC 58.723 45.455 0.00 0.00 0.00 2.92
155 156 3.361281 ACAGCACACCATCATCTTCAT 57.639 42.857 0.00 0.00 0.00 2.57
156 157 2.865119 ACAGCACACCATCATCTTCA 57.135 45.000 0.00 0.00 0.00 3.02
157 158 4.002982 TGTTACAGCACACCATCATCTTC 58.997 43.478 0.00 0.00 0.00 2.87
158 159 4.019792 TGTTACAGCACACCATCATCTT 57.980 40.909 0.00 0.00 0.00 2.40
159 160 3.701205 TGTTACAGCACACCATCATCT 57.299 42.857 0.00 0.00 0.00 2.90
160 161 4.379813 CCTTTGTTACAGCACACCATCATC 60.380 45.833 0.00 0.00 0.00 2.92
161 162 3.507233 CCTTTGTTACAGCACACCATCAT 59.493 43.478 0.00 0.00 0.00 2.45
162 163 2.884012 CCTTTGTTACAGCACACCATCA 59.116 45.455 0.00 0.00 0.00 3.07
163 164 2.884639 ACCTTTGTTACAGCACACCATC 59.115 45.455 0.00 0.00 0.00 3.51
164 165 2.884639 GACCTTTGTTACAGCACACCAT 59.115 45.455 0.00 0.00 0.00 3.55
165 166 2.092646 AGACCTTTGTTACAGCACACCA 60.093 45.455 0.00 0.00 0.00 4.17
166 167 2.548480 GAGACCTTTGTTACAGCACACC 59.452 50.000 0.00 0.00 0.00 4.16
167 168 3.467803 AGAGACCTTTGTTACAGCACAC 58.532 45.455 0.00 0.00 0.00 3.82
168 169 3.388024 AGAGAGACCTTTGTTACAGCACA 59.612 43.478 0.00 0.00 0.00 4.57
169 170 3.743396 CAGAGAGACCTTTGTTACAGCAC 59.257 47.826 0.00 0.00 0.00 4.40
170 171 3.388024 ACAGAGAGACCTTTGTTACAGCA 59.612 43.478 0.00 0.00 34.48 4.41
171 172 3.991121 GACAGAGAGACCTTTGTTACAGC 59.009 47.826 0.00 0.00 37.79 4.40
172 173 4.985409 GTGACAGAGAGACCTTTGTTACAG 59.015 45.833 0.00 0.00 41.00 2.74
200 201 3.580193 CGGACGCCGTCGAGGTAT 61.580 66.667 11.60 0.00 42.73 2.73
211 212 3.018840 CTAACGCCAAACCGGACGC 62.019 63.158 9.46 2.17 37.68 5.19
213 214 0.037975 TCTCTAACGCCAAACCGGAC 60.038 55.000 9.46 0.00 36.56 4.79
215 216 1.076332 CTTCTCTAACGCCAAACCGG 58.924 55.000 0.00 0.00 38.11 5.28
220 221 0.618458 ATGCCCTTCTCTAACGCCAA 59.382 50.000 0.00 0.00 0.00 4.52
227 228 2.551270 ACCTTCACATGCCCTTCTCTA 58.449 47.619 0.00 0.00 0.00 2.43
228 229 1.366319 ACCTTCACATGCCCTTCTCT 58.634 50.000 0.00 0.00 0.00 3.10
230 231 1.561542 CCTACCTTCACATGCCCTTCT 59.438 52.381 0.00 0.00 0.00 2.85
257 258 8.966868 AGATTTAAAGAGAACCAACAAAGTTCA 58.033 29.630 6.44 0.00 44.91 3.18
259 260 9.586435 CAAGATTTAAAGAGAACCAACAAAGTT 57.414 29.630 0.00 0.00 0.00 2.66
261 262 9.237846 GTCAAGATTTAAAGAGAACCAACAAAG 57.762 33.333 0.00 0.00 0.00 2.77
278 279 4.188462 TGACACGTCAACTGTCAAGATTT 58.812 39.130 3.54 0.00 43.99 2.17
279 280 3.792401 TGACACGTCAACTGTCAAGATT 58.208 40.909 3.54 0.00 43.99 2.40
294 295 6.136071 CCAACTGTTTCTCTTAATTGACACG 58.864 40.000 0.00 0.00 0.00 4.49
333 334 2.124695 GATGGGGTCCAAGTCGCC 60.125 66.667 0.00 0.00 36.95 5.54
347 348 6.788458 CATGTTGCAAAACAAATCGAAAGATG 59.212 34.615 0.00 0.00 42.09 2.90
348 349 6.073657 CCATGTTGCAAAACAAATCGAAAGAT 60.074 34.615 0.00 0.00 43.07 2.40
398 399 6.922957 TGCAGATTTACAATCTTTGAACAACC 59.077 34.615 0.00 0.00 0.00 3.77
409 410 5.207768 CCTACGCAATGCAGATTTACAATC 58.792 41.667 5.91 0.00 0.00 2.67
453 454 4.963276 TCCCTGCAAATAAACGATGAAG 57.037 40.909 0.00 0.00 0.00 3.02
456 457 4.898829 TCATCCCTGCAAATAAACGATG 57.101 40.909 0.00 0.00 0.00 3.84
457 458 7.765695 ATAATCATCCCTGCAAATAAACGAT 57.234 32.000 0.00 0.00 0.00 3.73
460 461 8.416329 AGACAATAATCATCCCTGCAAATAAAC 58.584 33.333 0.00 0.00 0.00 2.01
465 466 5.759059 AGAGACAATAATCATCCCTGCAAA 58.241 37.500 0.00 0.00 0.00 3.68
467 468 5.104402 TGAAGAGACAATAATCATCCCTGCA 60.104 40.000 0.00 0.00 0.00 4.41
468 469 5.371526 TGAAGAGACAATAATCATCCCTGC 58.628 41.667 0.00 0.00 0.00 4.85
469 470 7.772292 TCTTTGAAGAGACAATAATCATCCCTG 59.228 37.037 0.00 0.00 0.00 4.45
470 471 7.772757 GTCTTTGAAGAGACAATAATCATCCCT 59.227 37.037 0.44 0.00 44.30 4.20
471 472 7.772757 AGTCTTTGAAGAGACAATAATCATCCC 59.227 37.037 7.66 0.00 46.69 3.85
472 473 8.610896 CAGTCTTTGAAGAGACAATAATCATCC 58.389 37.037 7.66 0.00 46.69 3.51
473 474 9.376075 TCAGTCTTTGAAGAGACAATAATCATC 57.624 33.333 7.66 0.00 46.69 2.92
485 486 4.384247 GTCGTCATGTCAGTCTTTGAAGAG 59.616 45.833 0.00 0.00 37.61 2.85
527 528 6.839124 ATGCACTGAATCAACAATAGGAAA 57.161 33.333 0.00 0.00 0.00 3.13
530 531 9.590451 AAAAATATGCACTGAATCAACAATAGG 57.410 29.630 0.00 0.00 0.00 2.57
540 541 6.753279 CCATTCGTCAAAAATATGCACTGAAT 59.247 34.615 0.00 0.00 0.00 2.57
559 560 4.092821 TCTTCTTTGATTGTACGCCATTCG 59.907 41.667 0.00 0.00 45.38 3.34
560 561 5.545658 TCTTCTTTGATTGTACGCCATTC 57.454 39.130 0.00 0.00 0.00 2.67
561 562 5.705441 TCTTCTTCTTTGATTGTACGCCATT 59.295 36.000 0.00 0.00 0.00 3.16
562 563 5.245531 TCTTCTTCTTTGATTGTACGCCAT 58.754 37.500 0.00 0.00 0.00 4.40
563 564 4.637276 TCTTCTTCTTTGATTGTACGCCA 58.363 39.130 0.00 0.00 0.00 5.69
571 578 9.154847 CAAAGTTGGTTTTCTTCTTCTTTGATT 57.845 29.630 0.00 0.00 41.28 2.57
575 582 8.902540 AAACAAAGTTGGTTTTCTTCTTCTTT 57.097 26.923 2.30 0.00 33.52 2.52
614 621 9.528018 AGACACAAAATGACGAACAATTAAAAT 57.472 25.926 0.00 0.00 0.00 1.82
615 622 8.918961 AGACACAAAATGACGAACAATTAAAA 57.081 26.923 0.00 0.00 0.00 1.52
616 623 8.802856 CAAGACACAAAATGACGAACAATTAAA 58.197 29.630 0.00 0.00 0.00 1.52
617 624 8.184848 TCAAGACACAAAATGACGAACAATTAA 58.815 29.630 0.00 0.00 0.00 1.40
618 625 7.698628 TCAAGACACAAAATGACGAACAATTA 58.301 30.769 0.00 0.00 0.00 1.40
619 626 6.559810 TCAAGACACAAAATGACGAACAATT 58.440 32.000 0.00 0.00 0.00 2.32
620 627 6.130298 TCAAGACACAAAATGACGAACAAT 57.870 33.333 0.00 0.00 0.00 2.71
621 628 5.553290 TCAAGACACAAAATGACGAACAA 57.447 34.783 0.00 0.00 0.00 2.83
622 629 5.065859 ACATCAAGACACAAAATGACGAACA 59.934 36.000 0.00 0.00 0.00 3.18
623 630 5.510671 ACATCAAGACACAAAATGACGAAC 58.489 37.500 0.00 0.00 0.00 3.95
624 631 5.749596 ACATCAAGACACAAAATGACGAA 57.250 34.783 0.00 0.00 0.00 3.85
625 632 7.360861 GGAATACATCAAGACACAAAATGACGA 60.361 37.037 0.00 0.00 0.00 4.20
626 633 6.742718 GGAATACATCAAGACACAAAATGACG 59.257 38.462 0.00 0.00 0.00 4.35
627 634 7.592938 TGGAATACATCAAGACACAAAATGAC 58.407 34.615 0.00 0.00 0.00 3.06
628 635 7.448161 ACTGGAATACATCAAGACACAAAATGA 59.552 33.333 0.00 0.00 32.88 2.57
629 636 7.596494 ACTGGAATACATCAAGACACAAAATG 58.404 34.615 0.00 0.00 32.88 2.32
653 660 5.177725 AGAAAAACAACGGTCCATACAAC 57.822 39.130 0.00 0.00 0.00 3.32
687 2193 7.989170 CCGGTAGGTAAAGATGGTACTTTTAAT 59.011 37.037 0.00 0.00 40.09 1.40
694 2208 3.320256 CCTCCGGTAGGTAAAGATGGTAC 59.680 52.174 0.00 0.00 40.94 3.34
716 2230 3.487120 ACAAGACTGGTCAACTTACCC 57.513 47.619 3.51 0.00 38.90 3.69
753 2267 2.158885 GGCTAGACCAGGGATCAGTTTC 60.159 54.545 0.00 0.00 38.86 2.78
811 2325 4.715534 TTTGACCTGAACTGGTGGATAA 57.284 40.909 8.04 0.00 41.00 1.75
815 2329 3.758554 CCTAATTTGACCTGAACTGGTGG 59.241 47.826 8.04 0.00 41.00 4.61
816 2330 4.651778 TCCTAATTTGACCTGAACTGGTG 58.348 43.478 8.04 0.00 41.00 4.17
861 2377 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
862 2378 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.00 0.00 0.00 4.81
863 2379 3.070302 GTCTCTCTCTCTCTCTCTCTCCC 59.930 56.522 0.00 0.00 0.00 4.30
864 2380 3.243569 CGTCTCTCTCTCTCTCTCTCTCC 60.244 56.522 0.00 0.00 0.00 3.71
865 2381 3.632604 TCGTCTCTCTCTCTCTCTCTCTC 59.367 52.174 0.00 0.00 0.00 3.20
866 2382 3.632333 TCGTCTCTCTCTCTCTCTCTCT 58.368 50.000 0.00 0.00 0.00 3.10
867 2383 3.243569 CCTCGTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
868 2384 2.695666 CCTCGTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
902 2418 4.097286 TCTGTTAACAAGCAAAGGTCAACC 59.903 41.667 10.03 0.00 0.00 3.77
903 2419 5.065988 TCTCTGTTAACAAGCAAAGGTCAAC 59.934 40.000 10.03 0.00 0.00 3.18
904 2420 5.189928 TCTCTGTTAACAAGCAAAGGTCAA 58.810 37.500 10.03 0.00 0.00 3.18
905 2421 4.776349 TCTCTGTTAACAAGCAAAGGTCA 58.224 39.130 10.03 0.00 0.00 4.02
906 2422 4.214332 CCTCTCTGTTAACAAGCAAAGGTC 59.786 45.833 10.03 0.00 0.00 3.85
907 2423 4.137543 CCTCTCTGTTAACAAGCAAAGGT 58.862 43.478 10.03 0.00 0.00 3.50
908 2424 3.503748 CCCTCTCTGTTAACAAGCAAAGG 59.496 47.826 10.03 11.32 0.00 3.11
949 2465 5.452636 GGAGAGAAGAATGTTTAGGAGCGAT 60.453 44.000 0.00 0.00 0.00 4.58
1401 2939 3.431725 GTCTTCCCAAAGGCCGCG 61.432 66.667 0.00 0.00 30.52 6.46
1696 3234 3.192633 TCAAGAATGAATCAGTCGACGGA 59.807 43.478 20.56 20.56 33.45 4.69
1726 3264 7.092079 TCGACAAGTAATTTAGAACCGATGAA 58.908 34.615 0.00 0.00 0.00 2.57
1727 3265 6.623486 TCGACAAGTAATTTAGAACCGATGA 58.377 36.000 0.00 0.00 0.00 2.92
1728 3266 6.880822 TCGACAAGTAATTTAGAACCGATG 57.119 37.500 0.00 0.00 0.00 3.84
1729 3267 6.534079 CCTTCGACAAGTAATTTAGAACCGAT 59.466 38.462 0.00 0.00 0.00 4.18
1730 3268 5.865552 CCTTCGACAAGTAATTTAGAACCGA 59.134 40.000 0.00 0.00 0.00 4.69
1731 3269 5.865552 TCCTTCGACAAGTAATTTAGAACCG 59.134 40.000 0.00 0.00 0.00 4.44
1732 3270 7.662604 TTCCTTCGACAAGTAATTTAGAACC 57.337 36.000 0.00 0.00 0.00 3.62
1733 3271 9.543018 CAATTCCTTCGACAAGTAATTTAGAAC 57.457 33.333 0.00 0.00 28.33 3.01
1734 3272 9.496873 TCAATTCCTTCGACAAGTAATTTAGAA 57.503 29.630 0.00 0.00 28.33 2.10
1735 3273 9.667107 ATCAATTCCTTCGACAAGTAATTTAGA 57.333 29.630 0.00 0.00 28.33 2.10
1736 3274 9.708222 CATCAATTCCTTCGACAAGTAATTTAG 57.292 33.333 0.00 0.00 28.33 1.85
1737 3275 9.226606 ACATCAATTCCTTCGACAAGTAATTTA 57.773 29.630 0.00 0.00 28.33 1.40
1738 3276 8.110860 ACATCAATTCCTTCGACAAGTAATTT 57.889 30.769 0.00 0.00 28.33 1.82
1739 3277 7.687941 ACATCAATTCCTTCGACAAGTAATT 57.312 32.000 0.00 0.00 30.34 1.40
1740 3278 8.964476 ATACATCAATTCCTTCGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
1741 3279 8.258007 AGATACATCAATTCCTTCGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
1742 3280 7.782049 AGATACATCAATTCCTTCGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
1743 3281 6.644347 AGATACATCAATTCCTTCGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
1744 3282 8.138074 TCTAGATACATCAATTCCTTCGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
1745 3283 7.921214 GTCTAGATACATCAATTCCTTCGACAA 59.079 37.037 0.00 0.00 0.00 3.18
1746 3284 7.426410 GTCTAGATACATCAATTCCTTCGACA 58.574 38.462 0.00 0.00 0.00 4.35
1747 3285 6.579292 CGTCTAGATACATCAATTCCTTCGAC 59.421 42.308 0.00 0.00 0.00 4.20
1748 3286 6.262496 ACGTCTAGATACATCAATTCCTTCGA 59.738 38.462 0.00 0.00 0.00 3.71
1749 3287 6.439599 ACGTCTAGATACATCAATTCCTTCG 58.560 40.000 0.00 0.00 0.00 3.79
1750 3288 9.915629 AATACGTCTAGATACATCAATTCCTTC 57.084 33.333 0.00 0.00 0.00 3.46
1785 3323 9.046296 CGCAAAAGGATAAAGTTAGATGTATCT 57.954 33.333 0.00 0.00 40.86 1.98
1786 3324 9.042008 TCGCAAAAGGATAAAGTTAGATGTATC 57.958 33.333 0.00 0.00 0.00 2.24
1787 3325 8.827677 GTCGCAAAAGGATAAAGTTAGATGTAT 58.172 33.333 0.00 0.00 0.00 2.29
1788 3326 7.820386 TGTCGCAAAAGGATAAAGTTAGATGTA 59.180 33.333 0.00 0.00 0.00 2.29
1789 3327 6.653320 TGTCGCAAAAGGATAAAGTTAGATGT 59.347 34.615 0.00 0.00 0.00 3.06
1790 3328 7.072177 TGTCGCAAAAGGATAAAGTTAGATG 57.928 36.000 0.00 0.00 0.00 2.90
1791 3329 7.390718 AGTTGTCGCAAAAGGATAAAGTTAGAT 59.609 33.333 0.00 0.00 0.00 1.98
1792 3330 6.708949 AGTTGTCGCAAAAGGATAAAGTTAGA 59.291 34.615 0.00 0.00 0.00 2.10
1793 3331 6.899114 AGTTGTCGCAAAAGGATAAAGTTAG 58.101 36.000 0.00 0.00 0.00 2.34
1794 3332 6.870971 AGTTGTCGCAAAAGGATAAAGTTA 57.129 33.333 0.00 0.00 0.00 2.24
1795 3333 5.767816 AGTTGTCGCAAAAGGATAAAGTT 57.232 34.783 0.00 0.00 0.00 2.66
1796 3334 6.870971 TTAGTTGTCGCAAAAGGATAAAGT 57.129 33.333 0.00 0.00 0.00 2.66
1797 3335 7.484959 GGAATTAGTTGTCGCAAAAGGATAAAG 59.515 37.037 0.00 0.00 0.00 1.85
1798 3336 7.309920 GGAATTAGTTGTCGCAAAAGGATAAA 58.690 34.615 0.00 0.00 0.00 1.40
1799 3337 6.402766 CGGAATTAGTTGTCGCAAAAGGATAA 60.403 38.462 0.00 0.00 0.00 1.75
1800 3338 5.064198 CGGAATTAGTTGTCGCAAAAGGATA 59.936 40.000 0.00 0.00 0.00 2.59
1801 3339 4.142687 CGGAATTAGTTGTCGCAAAAGGAT 60.143 41.667 0.00 0.00 0.00 3.24
1802 3340 3.187637 CGGAATTAGTTGTCGCAAAAGGA 59.812 43.478 0.00 0.00 0.00 3.36
1803 3341 3.187637 TCGGAATTAGTTGTCGCAAAAGG 59.812 43.478 0.00 0.00 0.00 3.11
1804 3342 4.398549 TCGGAATTAGTTGTCGCAAAAG 57.601 40.909 0.00 0.00 0.00 2.27
1805 3343 4.529446 GTTCGGAATTAGTTGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
1806 3344 3.058777 GGTTCGGAATTAGTTGTCGCAAA 60.059 43.478 0.00 0.00 0.00 3.68
1807 3345 2.481185 GGTTCGGAATTAGTTGTCGCAA 59.519 45.455 0.00 0.00 0.00 4.85
1808 3346 2.070783 GGTTCGGAATTAGTTGTCGCA 58.929 47.619 0.00 0.00 0.00 5.10
1809 3347 1.060122 CGGTTCGGAATTAGTTGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
1810 3348 2.597305 CTCGGTTCGGAATTAGTTGTCG 59.403 50.000 0.00 0.00 0.00 4.35
1811 3349 2.347755 GCTCGGTTCGGAATTAGTTGTC 59.652 50.000 0.00 0.00 0.00 3.18
1812 3350 2.344025 GCTCGGTTCGGAATTAGTTGT 58.656 47.619 0.00 0.00 0.00 3.32
1813 3351 1.323534 CGCTCGGTTCGGAATTAGTTG 59.676 52.381 0.00 0.00 0.00 3.16
1814 3352 1.203052 TCGCTCGGTTCGGAATTAGTT 59.797 47.619 0.00 0.00 0.00 2.24
1815 3353 0.813184 TCGCTCGGTTCGGAATTAGT 59.187 50.000 0.00 0.00 0.00 2.24
1816 3354 1.478137 CTCGCTCGGTTCGGAATTAG 58.522 55.000 0.00 0.00 0.00 1.73
1817 3355 0.526954 GCTCGCTCGGTTCGGAATTA 60.527 55.000 0.00 0.00 0.00 1.40
1818 3356 1.810030 GCTCGCTCGGTTCGGAATT 60.810 57.895 0.00 0.00 0.00 2.17
1819 3357 2.202756 GCTCGCTCGGTTCGGAAT 60.203 61.111 0.00 0.00 0.00 3.01
1820 3358 1.659622 TATGCTCGCTCGGTTCGGAA 61.660 55.000 0.00 0.00 0.00 4.30
1821 3359 2.116533 TATGCTCGCTCGGTTCGGA 61.117 57.895 0.00 0.00 0.00 4.55
1822 3360 1.944676 GTATGCTCGCTCGGTTCGG 60.945 63.158 0.00 0.00 0.00 4.30
1823 3361 2.286559 CGTATGCTCGCTCGGTTCG 61.287 63.158 0.00 0.00 0.00 3.95
1824 3362 0.930742 CTCGTATGCTCGCTCGGTTC 60.931 60.000 0.00 0.00 0.00 3.62
1825 3363 1.064296 CTCGTATGCTCGCTCGGTT 59.936 57.895 0.00 0.00 0.00 4.44
1826 3364 1.818363 TCTCGTATGCTCGCTCGGT 60.818 57.895 0.00 0.00 0.00 4.69
1827 3365 1.369448 GTCTCGTATGCTCGCTCGG 60.369 63.158 0.00 0.00 0.00 4.63
1828 3366 0.926174 GTGTCTCGTATGCTCGCTCG 60.926 60.000 0.00 0.00 0.00 5.03
1829 3367 0.592754 GGTGTCTCGTATGCTCGCTC 60.593 60.000 0.00 0.00 0.00 5.03
1830 3368 1.313091 TGGTGTCTCGTATGCTCGCT 61.313 55.000 0.00 0.00 0.00 4.93
1831 3369 0.249073 ATGGTGTCTCGTATGCTCGC 60.249 55.000 0.00 0.00 0.00 5.03
1832 3370 3.237628 CATATGGTGTCTCGTATGCTCG 58.762 50.000 0.00 0.00 32.15 5.03
1833 3371 3.983988 CACATATGGTGTCTCGTATGCTC 59.016 47.826 7.80 0.00 42.75 4.26
1834 3372 3.982475 CACATATGGTGTCTCGTATGCT 58.018 45.455 7.80 0.00 42.75 3.79
2113 3652 0.948623 TTGAGCGTCACCGTTGGATG 60.949 55.000 0.00 0.00 36.15 3.51
2127 3677 2.186826 ATATGCGGGCGGTTTGAGC 61.187 57.895 0.00 0.00 0.00 4.26
2130 3680 0.525242 CAACATATGCGGGCGGTTTG 60.525 55.000 1.58 0.00 0.00 2.93
2131 3681 0.678366 TCAACATATGCGGGCGGTTT 60.678 50.000 1.58 0.00 0.00 3.27
2139 3689 2.030091 CAGTGCACTCTCAACATATGCG 59.970 50.000 18.64 0.00 39.18 4.73
2145 3695 1.570813 CGAACAGTGCACTCTCAACA 58.429 50.000 18.64 0.00 0.00 3.33
2149 3701 1.140816 GTTCCGAACAGTGCACTCTC 58.859 55.000 18.64 15.39 0.00 3.20
2150 3702 0.464036 TGTTCCGAACAGTGCACTCT 59.536 50.000 18.64 7.09 36.25 3.24
2153 3705 1.149361 TCGTGTTCCGAACAGTGCAC 61.149 55.000 14.35 9.40 44.03 4.57
2164 3716 2.096819 TGTTGAACTGCTTTCGTGTTCC 59.903 45.455 0.00 0.00 39.24 3.62
2167 3719 1.062002 CGTGTTGAACTGCTTTCGTGT 59.938 47.619 0.00 0.00 36.97 4.49
2170 3722 0.655733 ACCGTGTTGAACTGCTTTCG 59.344 50.000 0.00 0.00 36.97 3.46
2175 3727 2.094762 ATAGGACCGTGTTGAACTGC 57.905 50.000 0.00 0.00 0.00 4.40
2176 3728 4.042398 CGATATAGGACCGTGTTGAACTG 58.958 47.826 0.00 0.00 0.00 3.16
2177 3729 3.949754 TCGATATAGGACCGTGTTGAACT 59.050 43.478 0.00 0.00 0.00 3.01
2178 3730 4.297299 TCGATATAGGACCGTGTTGAAC 57.703 45.455 0.00 0.00 0.00 3.18
2180 3732 4.139038 TGATCGATATAGGACCGTGTTGA 58.861 43.478 0.00 0.00 0.00 3.18
2181 3733 4.476862 CTGATCGATATAGGACCGTGTTG 58.523 47.826 0.00 0.00 0.00 3.33
2182 3734 3.057456 GCTGATCGATATAGGACCGTGTT 60.057 47.826 0.00 0.00 0.00 3.32
2183 3735 2.488545 GCTGATCGATATAGGACCGTGT 59.511 50.000 0.00 0.00 0.00 4.49
2184 3736 2.488153 TGCTGATCGATATAGGACCGTG 59.512 50.000 0.00 0.00 0.00 4.94
2187 3739 3.181491 GCTCTGCTGATCGATATAGGACC 60.181 52.174 0.00 0.00 0.00 4.46
2188 3740 3.441922 TGCTCTGCTGATCGATATAGGAC 59.558 47.826 0.00 0.00 0.00 3.85
2189 3741 3.690460 TGCTCTGCTGATCGATATAGGA 58.310 45.455 0.00 0.19 0.00 2.94
2190 3742 3.443329 ACTGCTCTGCTGATCGATATAGG 59.557 47.826 0.00 0.00 0.00 2.57
2191 3743 4.395854 AGACTGCTCTGCTGATCGATATAG 59.604 45.833 0.00 0.91 0.00 1.31
2192 3744 4.331108 AGACTGCTCTGCTGATCGATATA 58.669 43.478 0.00 0.00 0.00 0.86
2193 3745 3.156293 AGACTGCTCTGCTGATCGATAT 58.844 45.455 0.00 0.00 0.00 1.63
2195 3747 1.401761 AGACTGCTCTGCTGATCGAT 58.598 50.000 0.00 0.00 0.00 3.59
2197 3749 2.857152 GTTTAGACTGCTCTGCTGATCG 59.143 50.000 3.58 0.00 0.00 3.69
2198 3750 2.857152 CGTTTAGACTGCTCTGCTGATC 59.143 50.000 3.58 0.00 0.00 2.92
2199 3751 2.232452 ACGTTTAGACTGCTCTGCTGAT 59.768 45.455 3.58 0.00 0.00 2.90
2200 3752 1.613925 ACGTTTAGACTGCTCTGCTGA 59.386 47.619 3.58 0.00 0.00 4.26
2201 3753 1.723542 CACGTTTAGACTGCTCTGCTG 59.276 52.381 0.00 0.00 0.00 4.41
2202 3754 1.341531 ACACGTTTAGACTGCTCTGCT 59.658 47.619 0.00 0.00 0.00 4.24
2203 3755 1.784525 ACACGTTTAGACTGCTCTGC 58.215 50.000 0.00 0.00 0.00 4.26
2204 3756 4.508124 AGAAAACACGTTTAGACTGCTCTG 59.492 41.667 0.00 0.00 31.63 3.35
2210 3762 4.330620 TGCGAAAGAAAACACGTTTAGACT 59.669 37.500 0.00 0.00 31.63 3.24
2212 3764 4.861389 TGCGAAAGAAAACACGTTTAGA 57.139 36.364 0.00 0.00 31.63 2.10
2214 3766 4.097012 GGTTGCGAAAGAAAACACGTTTA 58.903 39.130 0.00 0.00 35.94 2.01
2215 3767 2.918600 GGTTGCGAAAGAAAACACGTTT 59.081 40.909 0.00 0.00 35.94 3.60
2216 3768 2.521996 GGTTGCGAAAGAAAACACGTT 58.478 42.857 0.00 0.00 35.94 3.99
2235 3787 1.407437 CCCTTCACATTTCTCTCCGGG 60.407 57.143 0.00 0.00 0.00 5.73
2236 3788 2.014068 GCCCTTCACATTTCTCTCCGG 61.014 57.143 0.00 0.00 0.00 5.14
2242 3794 2.629617 CCACAAAGCCCTTCACATTTCT 59.370 45.455 0.00 0.00 0.00 2.52
2243 3795 2.289010 CCCACAAAGCCCTTCACATTTC 60.289 50.000 0.00 0.00 0.00 2.17
2247 3799 0.754957 CACCCACAAAGCCCTTCACA 60.755 55.000 0.00 0.00 0.00 3.58
2248 3800 0.467290 TCACCCACAAAGCCCTTCAC 60.467 55.000 0.00 0.00 0.00 3.18
2251 3803 0.609131 CGATCACCCACAAAGCCCTT 60.609 55.000 0.00 0.00 0.00 3.95
2265 3817 0.602638 GTGTGGCAGTTGTCCGATCA 60.603 55.000 0.00 0.00 0.00 2.92
2267 3819 1.302511 GGTGTGGCAGTTGTCCGAT 60.303 57.895 0.00 0.00 0.00 4.18
2268 3820 2.110213 GGTGTGGCAGTTGTCCGA 59.890 61.111 0.00 0.00 0.00 4.55
2283 3835 4.233558 GGTTTGGGTGGGCAGGGT 62.234 66.667 0.00 0.00 0.00 4.34
2300 3866 3.724914 GAGAAAGGCGAGGGAGCGG 62.725 68.421 0.00 0.00 38.18 5.52
2310 3876 1.259244 GATAGAAAGCGCGAGAAAGGC 59.741 52.381 12.10 0.00 0.00 4.35
2314 3880 0.821517 TGGGATAGAAAGCGCGAGAA 59.178 50.000 12.10 0.00 0.00 2.87
2318 3884 2.871427 GCGTGGGATAGAAAGCGCG 61.871 63.158 0.00 0.00 35.71 6.86
2321 3887 1.153429 ACCGCGTGGGATAGAAAGC 60.153 57.895 21.14 0.00 40.75 3.51
2349 3915 0.320334 TGACATGAATGTGACGCGGT 60.320 50.000 12.47 0.00 41.95 5.68
2354 3920 1.741706 CTGGGCTGACATGAATGTGAC 59.258 52.381 0.00 0.00 41.95 3.67
2356 3922 2.014857 CTCTGGGCTGACATGAATGTG 58.985 52.381 0.00 0.00 41.95 3.21
2357 3923 1.681166 GCTCTGGGCTGACATGAATGT 60.681 52.381 0.00 0.00 39.96 2.71
2366 3932 1.676635 GTTGCATGCTCTGGGCTGA 60.677 57.895 20.33 0.00 42.39 4.26
2372 3938 1.792301 CCGACTGTTGCATGCTCTG 59.208 57.895 20.33 16.78 0.00 3.35
2402 3968 1.424493 CTCCCGCTCTGTCAAATCGC 61.424 60.000 0.00 0.00 0.00 4.58
2403 3969 0.807667 CCTCCCGCTCTGTCAAATCG 60.808 60.000 0.00 0.00 0.00 3.34
2433 4000 0.885879 ACAGTGATAGTTCGCGTCCA 59.114 50.000 5.77 0.00 37.45 4.02
2440 4007 3.521560 TCAATGCCGACAGTGATAGTTC 58.478 45.455 0.00 0.00 45.35 3.01
2454 4021 4.776647 GTGCGCCGGTTCAATGCC 62.777 66.667 4.18 0.00 0.00 4.40
2505 4072 2.811317 GCGAGGAGGCGTGTTCAG 60.811 66.667 0.00 0.00 0.00 3.02
2523 4090 4.391358 CAGTCTGTTACCGTTTAAATGCG 58.609 43.478 1.60 0.00 0.00 4.73
2535 4102 1.610886 GGAAGGTGGGCAGTCTGTTAC 60.611 57.143 0.93 0.00 0.00 2.50
2536 4103 0.690762 GGAAGGTGGGCAGTCTGTTA 59.309 55.000 0.93 0.00 0.00 2.41
2537 4104 1.062488 AGGAAGGTGGGCAGTCTGTT 61.062 55.000 0.93 0.00 0.00 3.16
2538 4105 1.462238 AGGAAGGTGGGCAGTCTGT 60.462 57.895 0.93 0.00 0.00 3.41
2549 4116 1.838077 CGGGTCTTAATGGAGGAAGGT 59.162 52.381 0.00 0.00 0.00 3.50
2573 4140 3.751175 CCGGAGTAATTTTCTCAGCACAA 59.249 43.478 0.00 0.00 34.04 3.33
2581 4148 2.433436 GTGTGGCCGGAGTAATTTTCT 58.567 47.619 5.05 0.00 0.00 2.52
2586 4153 1.217244 GACGTGTGGCCGGAGTAAT 59.783 57.895 5.05 0.00 0.00 1.89
2587 4154 2.652530 GACGTGTGGCCGGAGTAA 59.347 61.111 5.05 0.00 0.00 2.24
2596 4163 2.938823 CTCGCAAACGGACGTGTGG 61.939 63.158 15.93 7.07 40.63 4.17
2599 4166 4.072088 GGCTCGCAAACGGACGTG 62.072 66.667 0.00 0.00 40.63 4.49
2609 4176 2.173758 TTAATGACGGGTGGCTCGCA 62.174 55.000 4.50 1.13 0.00 5.10
2610 4177 1.022451 TTTAATGACGGGTGGCTCGC 61.022 55.000 0.00 0.00 0.00 5.03
2611 4178 0.725117 GTTTAATGACGGGTGGCTCG 59.275 55.000 0.00 0.00 0.00 5.03
2612 4179 1.737793 CTGTTTAATGACGGGTGGCTC 59.262 52.381 0.00 0.00 0.00 4.70
2613 4180 1.349688 TCTGTTTAATGACGGGTGGCT 59.650 47.619 0.00 0.00 0.00 4.75
2614 4181 1.816074 TCTGTTTAATGACGGGTGGC 58.184 50.000 0.00 0.00 0.00 5.01
2615 4182 4.069304 TCTTTCTGTTTAATGACGGGTGG 58.931 43.478 0.00 0.00 0.00 4.61
2616 4183 4.755123 AGTCTTTCTGTTTAATGACGGGTG 59.245 41.667 0.00 0.00 38.12 4.61
2617 4184 4.755123 CAGTCTTTCTGTTTAATGACGGGT 59.245 41.667 0.00 0.00 38.12 5.28
2618 4185 5.283060 CAGTCTTTCTGTTTAATGACGGG 57.717 43.478 0.00 0.00 38.12 5.28
2630 4197 3.388864 GGTGGAGCCAACAGTCTTTCTG 61.389 54.545 0.00 0.00 42.49 3.02
2631 4198 1.202818 GGTGGAGCCAACAGTCTTTCT 60.203 52.381 0.00 0.00 37.17 2.52
2632 4199 1.239347 GGTGGAGCCAACAGTCTTTC 58.761 55.000 0.00 0.00 37.17 2.62
2633 4200 0.178990 GGGTGGAGCCAACAGTCTTT 60.179 55.000 6.91 0.00 39.65 2.52
2634 4201 1.456287 GGGTGGAGCCAACAGTCTT 59.544 57.895 6.91 0.00 39.65 3.01
2635 4202 2.529744 GGGGTGGAGCCAACAGTCT 61.530 63.158 6.91 0.00 39.65 3.24
2636 4203 2.034221 GGGGTGGAGCCAACAGTC 59.966 66.667 6.91 0.00 39.65 3.51
2637 4204 3.580319 GGGGGTGGAGCCAACAGT 61.580 66.667 6.91 0.00 39.65 3.55
2658 4225 2.231235 GCCATCATTTAAATAGCGGGGG 59.769 50.000 0.00 0.00 0.00 5.40
2659 4226 2.890311 TGCCATCATTTAAATAGCGGGG 59.110 45.455 0.00 0.51 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.