>input_sequence_71926
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---------------------------------------------------------ATGGCCGCGGCTTCTCCTCCCCT
CCTCCCCGTCTCCGTCCTCCCGGCGGCCACCGCCGCGACCGCCACCATCGTCCTCCCCGTTCCGGACACCTCCTCGGCGG
CCGACCAGCGCGCCTACCTCGCCCGCCTCCTCGACTCCGCCAAGCGCTCCCTCTCCGGCGCGCGCCCGTGGGCGGAGCTC
CTCCACCGCGCGGCGCTCAGCCGCCCGGACTCCCTCGCCGACGCCACCGCCCGCGTCCGCAGGAACCTCGCCTACTTCCG
CGTCAACTACGCCCTCCTCGTCGCGCTCTCCCTCGCCGCCTCCCTCCTCGCGCACCCGTTCGCGCTCGCCGCCCTGCTCG
CGCTCCTCGCCGCCTGGTGCGCGCTCTACCTCCTCCGCCCCGCCGACGCGCCCCCGCTCGCGGCCTTTGGGAAGACCTTC
TCCGAGAGGGAGACGCTGGGCGGGCTCCTGGCGGCGTCGGCGTTCGTCGTCTTCGTGACCTCCGTCGGGTCCATCGTCTT
CTCCGCCCTCGCGGCCGGCGCCGCGCTCGCCTGCGCGCACGGCGCGTTCCGGGTGCCCGAGGAACAGCTCTTCCTCGACG
ACGACCTGCAGCCTGGCGCTGGAGGAAGAGCGGGCTCCTCCGTCGACCTGCTCTCCTTCTTCACCAACGCCGCCGGAGGA
GGAGGCGGGCGCGGCTGA--------------------------------------------------------------
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>chr5D_1_TraesCS5D01G156800
TCCCTAGTGAAGTTTGGCATTCTAGCATCGGGGAGCATGCTGCCGGCGTTCTCAAGCGGCATTTTCGAGTGCGGGTCCGT
CCCTTTTGATTTTATTAGTTTTTATAGGTCTTTGCTTTCCTTAGATTTTGTTTTCCTGGTGGCATTGACGAAGTGATGAA
GATGATGGTGTGCTGTAACAAAGGTCTCTCTGTCACCTCCATACCTCGACGGCGTCCGGTTTGGCGTTAGAGAAGGGCAT
GTGAAGGTAGGTGTTGTTGAACTTTGTTGGTTCTCTTTAAATCTTGACAGTTGACGTGTCAATTAAGAGAAACAGTTGGT
TGGCTCTTGATATGGCGACTTGGACCCCATCTTTCGATTTGTTTTGCAACATGGCTTGCTTCATCCAACCCTCTAGACGG
TTGTTCAAAGATTGTAAATCTGCATTGCGTAGGTTAATGCCAGAACTAATGTTCTTCATCGTTTATTTGCAGGGATGATT
ATTGTCTCTTCAAAGACTGACATGACGACAATGTTTACGGTGTCTTTTTTCCTATTGTTGATTCAGTGCATATTTTTGAC
GAAT------GGCGTACAATCAAAGAAGAAGAAAACCAACTTTGTTTTCGTTGTAATTTTATTTTAATTGTTCGTCATTT
TGTGTCTTGATGTATTCCAG------------------------------------------------------------
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-------------------------------------------------------------------------------T
TGTATGGACCGTTGTTTTTCTTGACAATTACTATT--------AAAAGTACCATCTTTACCTACCGGAGGGGTAAGTTGA
CCAGTCTTGTATTTCACCAGCAATCTGAAACTGATCCCTGGTCTAGCCAAACTACTTATCAGCGTTTACAAATTCAGCTT
GAATTTATCC--ACCAGTTCAGGTCAAATTAGGAGACAGAAATGTCAACGCGGAGGGGGGGAGAGAGAGAGAGAGAGAGA
CGAGGCTGACCGTTGACGGTTGACCTTTGCTTGTTAACAGAGAGGGAAACGCGCGCCATCGTTCATCGCTCCTAAACATT
CTTCTCTCCCAGATAC----------------------GGTGGCATCCACCGACGCCATGGCCGCGGCTTCTCCTCCCCT
CCTCCCCGTCTCCGTCCTCCCGGCGGCCACCGCCGCGACCGCCACCATCGTCCTCCCCGTTCCGGACACCTCCTCGGCGG
CCGACCAGCGCGCCTACCTCGCCCGCCTCCTCGACTCCGCCAAGCGCTCCCTCTCCGGCGCGCGCCCGTGGGCGGAGCTC
CTCCACCGCGCGGCGCTCAGCCGCCCGGACTCCCTCGCCGACGCCACCGCCCGCGTCCGCAGGAACCTCGCCTACTTCCG
CGTCAACTACGCCCTCCTCGTCGCGCTCTCCCTCGCCGCCTCCCTCCTCGCGCACCCGTTCGCGCTCGCCGCCCTGCTCG
CGCTCCTCGCCGCCTGGTGCGCGCTCTACCTCCTCCGCCCCGCCGACGCGCCCCCGCTCGCGGCCTTTGGGAAGACCTTC
TCCGAGAGGGAGACGCTGGGCGGGCTCCTGGCGGCGTCGGCGTTCGTCGTCTTCGTGACCTCCGTCGGGTCCATCGTCTT
CTCCGCCCTCGCGGCCGGCGCCGCGCTCGCCTGCGCGCACGGCGCGTTCCGGGTGCCCGAGGAACAGCTCTTCCTCGACG
ACGACCTGCAGCCTGGCGCTGGAGGAAGAGCGGGCTCCTCCGTCGACCTGCTCTCCTTCTTCACCAACGCCGCCGGAGGA
GGAGGCGGGCGCGGCTGAGGCGCCCCACGTCATTCCGTCGACTGATTCATTCTTGAGAAATACTTCATCGGTTCTAAATT
ACTTGTCGAAGGAATTGATGTATCTAGACGTATTTTAATTCTAGATACATCTAACTTTATCCTTTTGCGACAACTAATTC
CGAACCGAGCGAGCATACGAGACACCATATGTGTTGCTAGTTAGCTACACCTACGTACACTAAATGAATTTTTTAATTAC
ATTTAGGATTTTATACGATTCAAAAGATTTTTATAGGAAATTTGGAGAAACAAAATATTTATGAATTATTTCTCTGTGGA
TTGTTTGATACCTAGAATTGAATTATATATGA-TATTTTTCTAAGAATTTATTTGCATTGTGTTTCTAGGAAATGTTTCA
TCTATTCAAAACTCATGAAATGAATTATTGGTTTCTCATATGGTGTAAGGGCA-----------TCCAACGGTGACGCTC
AAACCGCCCGCATAT--GTTGAGAGTGCACTGTTCGGAACACGAAAGCAGTTCAACACGGTCCTATATCGATCAGCAGAG
CAGTCTAAACGTGTTTTCTTTCGCAACCCGGAGAGAAATGTGAAGGGCTTTGTGGGTGATCGGACAACTGCCACA-----
---------CCCTGCCCACCCAAACCCGCTCCCTCGCCTTTCTCGCGCTTTCTATCCCACGCGGTGCGCCGCTTACCGCG
TCACATTCATGTCAGCCCAGAGCATGCAACAGTCGGCATTGATGCCCGCGA-TTTGACAGAGCGGGAGGGCAGCGCAGAT
GGACGCGAACTATCACTGTCGGCATTGAACCGGCGCACCGGCCAAGAGAGCGCCGCCCGCTGCTCGCCCGGCTGAACACG
CCTCCTCGCCGCATTTAAACGGTAACAGACTGCCCACCTTCCTCCATTAAGACCCGCACTTGTGCTGAGAAAATTACTCC
GGCCACACGTCCGTTTGCGAGCCACCCGTCATTAAACAGAAAGACTGTTGGCTCCACCCCCCACCCCCCGCTATTTAAAT
GATGGCA
>chr5A_1
TCCTTAATGAAGTTTGGCGTTCTAGCGTCGGGGAACATGCCGCCGACATTCTCGAGCCACATCTTCGAGTGTGGGTCCGT
CCCTTTTGACTTTCTTAGTTTTTACAGGTTTTTGCTTTCCTTAGATTTTGTTTTCCTGGTGGCATGT-------------
-------------TGTAACAAAGGTCTCTCTGTCACCTCCCTACCTCGACAACATTCGGTCTGGCGTCGGGGAAGGGCAT
GTGAAGGTAGGTGTTGTAGGATTTTGTTGGTTCTCTTTGGATCTTGACAGTTGATGTGTCAATTAAGAGAAACAGTTGGT
TGGCTCTTGATACAGCGATTTGGACCCACTCTTTCGATTTGTTCTGCAACATGGCTTGCTTCATCCAACCCTCTAGACAG
TTGTTCAAAAATTGTAAAACTGCATTGCGTAGGGTAATGTCACAACTAATGTTTTTTCTCTTTTACT-------ATGATT
ATTGTGTCTTCAAAGACTGACATGACGATGATGTTTACGGGTGTCTTCTTTTTATTGTTGGTTCAGTGCATATTTTAATT
TGTGACGAACGGCGTACCATCGAACAAGAAGAAAACCAATTTTGTTTTATTTATG---------------------ATTT
TGTGTCTTGATGTATTCCACTTGTACAACGGTGGAGCCAGCACACAAGCGTTGGGTTCAAGTGAACCCAACAACTTTTTC
TACGTACCTGCGTGTAGTGCATGTTTGGTTCACCTGAACCTAGTAAAAAATCATGCCTGACCCCAATAACGTGAGGTGGT
CATGTGAATAGCGTAAGCAAAGGGCCCAAAAGCTCACGGGTCATCAATGTCTAGGCGCCCAGCTGGCCAGGCCTAAACCG
TGATTAGTCACGTAGTCTGTACTCACATTTTGTATACGTATATGCACGCACGCACGCAGCCACACGCCTCCTCGGGACTC
GGGTCGTCATCTGTTCGTTTTCCAATTCGCATCTCTCCTCTAGTCTATTCGTGTTCCTCGGCGGCGTCTCGGCCGCCGCA
CACCAGCAGCAGGCAGGCTGCTACAGATCCACAGCGGCAACAGTCTTAGGGGTGTTTGTTTTCAGGGACTTTTTTGTGTA
GGGGCTAGAAAAAGTCTTTTTTAGAGACTTTTTTATCAAACGGGAAGGACTTTTTAGGGACTAAACTAGGCATTTGAGAC
TAAATGAAGAAGACTCTCAAGGAGAGTCTTTTTGGAACTTTTTAGGACTTTTTCAACAATGCCCCTCCATGCATCTATTG
GCCCGCCACCCCATGGTGTTGTTTGATTGTTATTTTTCTATATACTAGGGGCAACATGGTCATTTAATAACCTCTAGGAA
GGGACTAAGGACTTTTTAGTCTCTGGAAACAAACATGGAGGAACTTTTTAGGGACTAGGGACTTTTTAGTTGGGACTAGA
AAAAGTCCTAGGACTAGAGAACCAAACACCACCTTAACCCAAAATTTCAGGTAATTAGAATACATTGCCACATCTCCTCA
TCTTCTCTCTCTTATGTATGTTCTATCTAGCCTACTAACTTAGGGTAATAGTGATTTTTTTGCCCTAGTTTTTTATTTGT
TTTTCTTCATGGACTTTGATTGATCAAGGCTATGAAGCGGTATTACTCAAAGAGAACTCGGACACAAATCCAGAATGATA
CATGCACATCAAGGTCACACAGTAGACAGGCAAAGTACATCAAATGTTACTACAACTAGTCTTCCGAAGCCCACTATAGA
CAACGAAATTAATTTAGATGAGTTGCCTTATGAACCAGCTGATCGAAAGATAATTTCAGAGTATAAAAGAAATCCAAAGA
TGCAAGATGAGATTAGGCATAGATATTTAACAAGGAAACCTTACAGGCCATCGTCTAATTTTGATTACTTGTAGAGAAAG
GTTGGAGAGACTCAACGTAGAATTAATCCAGATTAGTTTGATGAATATGGTCGTTGGCTTGAGCATAGTGCCAAGTTGCA
TAAGGCCTTTTGTTTGTGTTGATACCTTTTTAGAGATTACAATGAAGAACAAACTAGGAGTGATGCATTTGTAATTAATG
GTTGGAAAAAAGAGAGTCAAATTCTCATAAAGAGAATGAGCGAACCCAATGAACAAATTTTCTGGCTCCGGCCCTGCACT
TGTATGGACCGTTTTTTTTCTTGACAATTATTTTTTTATTAAGAAAAATACCATCTTTACCTACCGGAGTGGTAAGTTGA
CCAGTCTTGTATTTCACCAGCAATCTCAAACTGATGCCTAGTCTAGCCAAACTACTTATCAGCGTTTACAAATTCAGCTT
GAATGTATATCTACCAGTTCAGGTCAAATTAGGAGACAGAAATGTCAACTCG------------GAGAGAGAGAGAGAGA
CCAGGCTGACCGTTGAC-------CTTTGCTTGTTAACAGAGAGGGAAACGCGCGCCATCGTTCGTCGCTCCTAAACATT
CTTCTCTCCCAGATAAAGAAAACATTATTCTCTACGGTGGTGGCATCCACCGACGCCATGGCCGCGGCTTCTCCTCCCCT
CCTCCCCGTCTCCGTTATCCCGGCGGCCACCGCCGCGACCGCCACCATCGTCCTCCCCGCCCCGGACACCTCCTCGGCGG
CCAACCAGCGCGCCTATCTCGCCCGCCTCCTCGACTCCGCCAAGCGCTCCCTCTCCGGCGCGCGCCCGTGGGCCGAGCTC
CTCGACCGCGCGGCGCTCAGCCGCCCGGACTCCCTCGCCGACGCCACCGCCCGCGTCCGCAGGAACCTCGCCTACTTCCG
CGTCAACTACGCCCTCCTCGTCGCGCTCTCCCTCGCCGCCTCCCTCCTGGCGCACCCGTTCGCGCTCGCCGCCCTGCTCG
CGCTCCTCGCCGCCTGGTGCGCGCTCTACCTCCTCCGCCCCGCCGACGCGCCCCCGCTGGCGGCCTTTGGGAAGACCTTC
TCCGAGAGGGAGACGCTGGGCGGGCTCTTGGCGGCGTCGGCGTTCGTCGTCTTCGTGACCTCCGTCGGGTCCATCGTCTT
CTCCGCCCTCGCGGCCGGCGCCGTGCTCGCCTGCGCGCACGGCGCGTTCCGGGTGCCCGAGGAACAGCTCTTCCTCGACG
ACGACCTGCAGCCTGGCGCTGGAGGAAGAGCGGGCTCCTCCGTCGACCTGCTCTCCTTCTTCACCAACGCCGCGGGAGGA
GGAGGCGGGCGCGGCTGAGGCGCCCCACGTCATGCCGTCGACTGATTCATTCTTGAGAAATAC-----------------
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----------------ACGAGACACCATATGTGTTGCTAGTTAGCTACACCTACATACACTAAATGAATTTTTTAATTGC
ATTTAGGATTTTATACGATTCAAAATATTTTTATAGGAAATTTGGAGAAACAAAACATTCATGAATTATTTGTTTGTGGA
TTGTTCGATGCCTAGAATTGAATTATATATGG-TTTTTTTCTAAGAATTTATTTGCATTGTGTTTCTAGGAAATGTTTCA
TCTATTCAAAACTCATGAAATGAATTATTGGTTTCTCATCTGGGGTAAGGGAATCTCGGGAATCTCCAAGGGCGACACTT
GAACCGCCTGCATACACGTTCGGACTGCGTTGTTCAGACCAGGAAAAACATATCCAACATGGTCTTGTAT------AGAG
CGGCCGGGACGTGTTTTCTTTCGCAAATCGGAGGCAAACATGTAGGGCTTTGTGGGCGTCCGGACAGTTGCCACGCCCGC
TTCTGACCGCCCTGCCCACCCAAACTCGCTCCCTCACCTCTCTTGCACTTTCCATCCCACGCGTCACGCCGCTTGCCGCA
TTGCATTCATGCCAGCCTAGAGCATGCAGCAGCCAGCATTGATGCCCATGATTTTGACCGAAAGGGAGGGCGGCGCAGAC
GGACGCAACCTCTCATTGGCAGCATTGAACGGGCGCGCCGGCCGAGGGTGTCGG--CCGCTGCTCGCCCGGTTGAACACG
CCTCCTTGCAGCATTTAAACGCCCGCAGACTGCCCGCCTTCCTCCATTAAGCCCTGCACCTGTGCTGGGAAACCTACTCC
GGACAAACGTCTGTT-----------------------------------------------------------------
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>chr5B_735
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-------TGTATTTCACTAGCAATCTCAAACTGATTCCTGGTCTAGCCAAACTACTTGTCAGCGTTTACAAATTCAGCTT
GAATATAT-----CCAGGTCAGGTCAAATTATGCGACAGAAATGTCAACGCG------------G------AGAGAGAGA
CGAGGCTGACCGTTGAC-------CTTTGCTTGTTAACAGAGAGGGAAACGCGCGCCATCGTACGTTACTCCTAAACATA
CTTCTCTCCCAGATAAAGAAAACATTATTCTCTACGGTGG---CATCCATCGACGCCATGGCTGCGGCTTCTCCTCCCCT
CCTCCCCGTCTCCGTTCTCCCGGCGGCCACCACCGCGACCACCACCATCGTCCTCCCCGTTCCGGACACCTCCTCGGCGG
CCGACCAGCGCGCCTACCTCTCCCGCCTCCTCGACTCCGCCAAGCGCTCCCTCTCCGGCGCGCGCCCGTGGGCGGAGCTC
CTCGACCGCGCGGCGCTCAGCCGCCCGGAATCCCTCGCCGACGCCACCGCCCGCGTCCGCAGGAACCTCGCCTACTTCCG
CGTCAACTACGCTCTCCTCGTCGCGTTCTCCCTCGCCGCCTCCCTCCTCGCGCACCCGTTCGCGCTCGCCGCCCTGCTCG
CGCTCCTCGCCGCCTGGTGCGCGCTCTACCTCCTCCGCGCCGCCGACGCACCCCCGCTGGAGGCCTTTGGGAAGACCTTC
TCCGAGAGGGAGACGCTGGGCGGGCTCTTGGCGGCGTCGGCGTTCGTCGTGTTCGTGACCTCCGTCGGGTCCATCGTCTT
CTCCGCCCTCGCGGCCGGCGCCGCGCTCGCCTGCGCGCATGGCGCGTTCCGGGTGCCCGAGGAACAGCTCTTCCTCGACG
ACGACATACAGCCTGGCGCTGGAGGAAGAGTGGGCTCCTCCGTCGACCTGCTCTCCTTCTTCACCAACGCCGCCGGAGGA
GGAGGTGGACGCGGCTGAGGCGCCCCACGTCATGCCGTCGACTGATTCATTCTCGAGAAATAC-----------------
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----------------ACGAGACACCATATGTGTTGCTAGTTAGCTACACC------------------------ATTAC
ATTTAGGATTTTATACGATTCAAAAAGAA---ATAGGAAATTTAGAGAAACACACTATTTATGAATTATTTCTCTGTGGA
TTATTTGAT-CCTAGAATCGAATCATATATGATTTTTTTTCTAAGAATTTATTTGCATTATGTTTGTAGGAAATGTTTCG
TCTATTCAAATC----GAAATGAAATATTGGTTTCTCATATGGTGTAA--------------------------------
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>SNPs
---S--S-----------S-------S-------S-----S----S-S-----S---SS---S--------S--------
---------S---S----------S----S-----------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------------------------S---------SS-S-S----S------SS-S---------
-----------------S-S-S----------------SS--------------S-------------------------
------------SS----S--------SS--------------S----------------------------------S-
---------S--------S--------------S-----S--S----------S--SS--S----S-SSSSSSS------
-----S----------------------SS----------SSSSS--S--SS--------S---------------SSSS
SSSS-------------S---S--S--------------S--------SS--S-SSSSSSSSSSSSSSSSSSSSSS----
-------------------S------------------------------------------------------------
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-------------S----------------S-S--------------S---------------------S----------
--------------------------S--------S--------------------------------------------
----S---SS------------------------------------------SSSSSSSSSSSS----------------
-----------------SSSSSSS----------------------------------------S---------------
---------------S----------------------------------------------------------------
---------------S----------------------------------------------------------------
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---S----------------------------------------------------------------------------
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----------------------------------------------------------S---------------------
---------------------------S----------------------------------------------------
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---------------------------------S-----------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--------------------------------------S-------------------------
-------------------------S------------------------------------------------------
---------S------------------------S---------------------------------------------
---------------------------------------------------S-----------------S--S---S--S
S-------S-----S-----SS--S---SS-----S--S--S----SSSS-SSSSS--SSSSSSS-S-SSSSSSSS----
-S-S-SSS------------------SS-----SS---SS--S-------------S-SS------SS------S-----
-------------------------S---------S---S---S--S-----S----------SSS--------S----S
-SS--------S-----S----------S---S-S------------SS---------S--SS--------S-------S
------S-S--S---S--S-S---------S-----S------S--S-S-SSSSSS---------------S--------
------S--S-----------SSSS----------S---------------S--S----S-------S----SS------
--S--S-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_151
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---------------------------------------------------TTTCCTGGTGGCATTGACGA---------
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>reverse_3369
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--------GCGAGCATACGAGACACCAT----------------------------------------------------
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