Multiple sequence alignment - TraesCS5D01G147400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G147400 chr5D 100.000 2897 0 0 1 2897 233743598 233740702 0.000000e+00 5350
1 TraesCS5D01G147400 chr5D 86.758 219 24 5 1098 1314 233748941 233748726 3.730000e-59 239
2 TraesCS5D01G147400 chr5A 90.674 2166 101 43 783 2897 321019552 321021667 0.000000e+00 2787
3 TraesCS5D01G147400 chr5A 86.897 290 22 10 517 791 321013602 321013890 7.800000e-81 311
4 TraesCS5D01G147400 chr5A 88.542 192 18 4 1125 1314 321001436 321001625 2.250000e-56 230
5 TraesCS5D01G147400 chr5B 91.343 1675 72 31 560 2193 271140400 271142042 0.000000e+00 2222
6 TraesCS5D01G147400 chr5B 91.945 658 22 13 2242 2897 271142042 271142670 0.000000e+00 893
7 TraesCS5D01G147400 chr5B 82.426 404 44 12 108 486 271139675 271140076 7.740000e-86 327
8 TraesCS5D01G147400 chr5B 86.547 223 22 8 1097 1314 271110144 271110363 3.730000e-59 239
9 TraesCS5D01G147400 chr5B 89.130 92 8 1 495 584 271140363 271140454 2.360000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G147400 chr5D 233740702 233743598 2896 True 5350.00 5350 100.000 1 2897 1 chr5D.!!$R1 2896
1 TraesCS5D01G147400 chr5A 321019552 321021667 2115 False 2787.00 2787 90.674 783 2897 1 chr5A.!!$F3 2114
2 TraesCS5D01G147400 chr5B 271139675 271142670 2995 False 888.75 2222 88.711 108 2897 4 chr5B.!!$F2 2789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.038599 TGACCCATTGCACATGCTCT 59.961 50.0 5.31 0.0 42.66 4.09 F
346 350 0.233848 CACCCGCTTTCACACGTAAC 59.766 55.0 0.00 0.0 0.00 2.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1659 1.026182 CATGCATGCACGGTACCTGT 61.026 55.0 25.37 6.96 0.00 4.00 R
2197 2596 0.817634 TTTTCCCCGCCTATGCATCG 60.818 55.0 0.19 0.00 37.32 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.581253 TTTTTCCTCTGATATCTTTTTCCTCC 57.419 34.615 3.98 0.00 0.00 4.30
45 46 6.891306 TTCCTCTGATATCTTTTTCCTCCA 57.109 37.500 3.98 0.00 0.00 3.86
46 47 6.240549 TCCTCTGATATCTTTTTCCTCCAC 57.759 41.667 3.98 0.00 0.00 4.02
47 48 5.966935 TCCTCTGATATCTTTTTCCTCCACT 59.033 40.000 3.98 0.00 0.00 4.00
48 49 6.098982 TCCTCTGATATCTTTTTCCTCCACTC 59.901 42.308 3.98 0.00 0.00 3.51
49 50 6.126940 CCTCTGATATCTTTTTCCTCCACTCA 60.127 42.308 3.98 0.00 0.00 3.41
50 51 7.419981 CCTCTGATATCTTTTTCCTCCACTCAT 60.420 40.741 3.98 0.00 0.00 2.90
51 52 7.504403 TCTGATATCTTTTTCCTCCACTCATC 58.496 38.462 3.98 0.00 0.00 2.92
52 53 7.126268 TCTGATATCTTTTTCCTCCACTCATCA 59.874 37.037 3.98 0.00 0.00 3.07
53 54 7.809238 TGATATCTTTTTCCTCCACTCATCAT 58.191 34.615 3.98 0.00 0.00 2.45
54 55 8.277197 TGATATCTTTTTCCTCCACTCATCATT 58.723 33.333 3.98 0.00 0.00 2.57
55 56 9.129532 GATATCTTTTTCCTCCACTCATCATTT 57.870 33.333 0.00 0.00 0.00 2.32
56 57 7.787623 ATCTTTTTCCTCCACTCATCATTTT 57.212 32.000 0.00 0.00 0.00 1.82
57 58 6.985117 TCTTTTTCCTCCACTCATCATTTTG 58.015 36.000 0.00 0.00 0.00 2.44
58 59 6.550854 TCTTTTTCCTCCACTCATCATTTTGT 59.449 34.615 0.00 0.00 0.00 2.83
59 60 5.710513 TTTCCTCCACTCATCATTTTGTG 57.289 39.130 0.00 0.00 0.00 3.33
60 61 3.084039 TCCTCCACTCATCATTTTGTGC 58.916 45.455 0.00 0.00 0.00 4.57
61 62 2.165030 CCTCCACTCATCATTTTGTGCC 59.835 50.000 0.00 0.00 0.00 5.01
62 63 2.821378 CTCCACTCATCATTTTGTGCCA 59.179 45.455 0.00 0.00 0.00 4.92
63 64 3.433343 TCCACTCATCATTTTGTGCCAT 58.567 40.909 0.00 0.00 0.00 4.40
64 65 3.193903 TCCACTCATCATTTTGTGCCATG 59.806 43.478 0.00 0.00 0.00 3.66
65 66 3.056393 CCACTCATCATTTTGTGCCATGT 60.056 43.478 0.00 0.00 0.00 3.21
66 67 4.561938 CCACTCATCATTTTGTGCCATGTT 60.562 41.667 0.00 0.00 0.00 2.71
67 68 4.992319 CACTCATCATTTTGTGCCATGTTT 59.008 37.500 0.00 0.00 0.00 2.83
68 69 6.157904 CACTCATCATTTTGTGCCATGTTTA 58.842 36.000 0.00 0.00 0.00 2.01
69 70 6.645827 CACTCATCATTTTGTGCCATGTTTAA 59.354 34.615 0.00 0.00 0.00 1.52
70 71 6.869913 ACTCATCATTTTGTGCCATGTTTAAG 59.130 34.615 0.00 0.00 0.00 1.85
71 72 6.990798 TCATCATTTTGTGCCATGTTTAAGA 58.009 32.000 0.00 0.00 0.00 2.10
72 73 7.613585 TCATCATTTTGTGCCATGTTTAAGAT 58.386 30.769 0.00 0.00 0.00 2.40
73 74 8.747471 TCATCATTTTGTGCCATGTTTAAGATA 58.253 29.630 0.00 0.00 0.00 1.98
74 75 9.368674 CATCATTTTGTGCCATGTTTAAGATAA 57.631 29.630 0.00 0.00 0.00 1.75
75 76 8.755696 TCATTTTGTGCCATGTTTAAGATAAC 57.244 30.769 0.00 0.00 0.00 1.89
76 77 8.363390 TCATTTTGTGCCATGTTTAAGATAACA 58.637 29.630 0.00 0.00 41.81 2.41
77 78 7.938563 TTTTGTGCCATGTTTAAGATAACAC 57.061 32.000 0.00 0.00 40.53 3.32
78 79 6.892658 TTGTGCCATGTTTAAGATAACACT 57.107 33.333 7.70 0.00 40.53 3.55
79 80 6.252967 TGTGCCATGTTTAAGATAACACTG 57.747 37.500 7.70 0.00 40.53 3.66
80 81 5.767665 TGTGCCATGTTTAAGATAACACTGT 59.232 36.000 7.70 0.00 40.53 3.55
81 82 6.072728 TGTGCCATGTTTAAGATAACACTGTC 60.073 38.462 7.70 0.00 40.53 3.51
82 83 6.149474 GTGCCATGTTTAAGATAACACTGTCT 59.851 38.462 0.00 0.00 40.53 3.41
83 84 6.714810 TGCCATGTTTAAGATAACACTGTCTT 59.285 34.615 0.00 0.00 40.53 3.01
84 85 7.880713 TGCCATGTTTAAGATAACACTGTCTTA 59.119 33.333 0.00 0.00 40.53 2.10
85 86 8.893727 GCCATGTTTAAGATAACACTGTCTTAT 58.106 33.333 0.00 0.00 40.53 1.73
89 90 9.431887 TGTTTAAGATAACACTGTCTTATGACC 57.568 33.333 6.32 0.00 35.79 4.02
90 91 8.880750 GTTTAAGATAACACTGTCTTATGACCC 58.119 37.037 6.32 0.00 42.28 4.46
91 92 6.620877 AAGATAACACTGTCTTATGACCCA 57.379 37.500 6.32 0.00 42.28 4.51
92 93 6.814954 AGATAACACTGTCTTATGACCCAT 57.185 37.500 6.32 0.00 42.28 4.00
93 94 7.200434 AGATAACACTGTCTTATGACCCATT 57.800 36.000 6.32 0.00 42.28 3.16
94 95 7.050377 AGATAACACTGTCTTATGACCCATTG 58.950 38.462 6.32 1.68 42.28 2.82
95 96 3.347216 ACACTGTCTTATGACCCATTGC 58.653 45.455 6.32 0.00 42.28 3.56
96 97 3.244875 ACACTGTCTTATGACCCATTGCA 60.245 43.478 6.32 0.00 42.28 4.08
97 98 3.127548 CACTGTCTTATGACCCATTGCAC 59.872 47.826 6.32 0.00 42.28 4.57
98 99 3.244875 ACTGTCTTATGACCCATTGCACA 60.245 43.478 6.32 0.00 42.28 4.57
99 100 3.949754 CTGTCTTATGACCCATTGCACAT 59.050 43.478 6.32 0.00 42.28 3.21
100 101 3.695556 TGTCTTATGACCCATTGCACATG 59.304 43.478 6.32 0.00 42.28 3.21
101 102 2.689471 TCTTATGACCCATTGCACATGC 59.311 45.455 0.00 0.00 42.50 4.06
102 103 2.440517 TATGACCCATTGCACATGCT 57.559 45.000 5.31 0.00 42.66 3.79
103 104 1.108776 ATGACCCATTGCACATGCTC 58.891 50.000 5.31 0.00 42.66 4.26
104 105 0.038599 TGACCCATTGCACATGCTCT 59.961 50.000 5.31 0.00 42.66 4.09
105 106 1.180029 GACCCATTGCACATGCTCTT 58.820 50.000 5.31 0.00 42.66 2.85
106 107 2.290832 TGACCCATTGCACATGCTCTTA 60.291 45.455 5.31 0.00 42.66 2.10
107 108 2.357009 GACCCATTGCACATGCTCTTAG 59.643 50.000 5.31 0.00 42.66 2.18
108 109 2.291153 ACCCATTGCACATGCTCTTAGT 60.291 45.455 5.31 0.00 42.66 2.24
109 110 2.756760 CCCATTGCACATGCTCTTAGTT 59.243 45.455 5.31 0.00 42.66 2.24
110 111 3.194116 CCCATTGCACATGCTCTTAGTTT 59.806 43.478 5.31 0.00 42.66 2.66
111 112 4.322198 CCCATTGCACATGCTCTTAGTTTT 60.322 41.667 5.31 0.00 42.66 2.43
112 113 5.232463 CCATTGCACATGCTCTTAGTTTTT 58.768 37.500 5.31 0.00 42.66 1.94
143 144 4.384056 ACTTTGCTCTTATCCGATGGATG 58.616 43.478 8.59 0.00 43.06 3.51
157 158 4.039245 CCGATGGATGTGGTATCTAGTGTT 59.961 45.833 0.00 0.00 0.00 3.32
160 161 6.461648 CGATGGATGTGGTATCTAGTGTTCTT 60.462 42.308 0.00 0.00 0.00 2.52
196 197 6.330004 TGTTATGTGCTTGATTGTGATGTT 57.670 33.333 0.00 0.00 0.00 2.71
198 199 7.880105 TGTTATGTGCTTGATTGTGATGTTTA 58.120 30.769 0.00 0.00 0.00 2.01
225 229 2.747446 TGAAACGGAGGCATAAGCTTTC 59.253 45.455 3.20 0.00 41.70 2.62
233 237 0.746659 GCATAAGCTTTCGCCCCATT 59.253 50.000 3.20 0.00 37.91 3.16
241 245 3.706086 AGCTTTCGCCCCATTTATTGATT 59.294 39.130 0.00 0.00 36.60 2.57
266 270 3.639561 GGGGGAAAAGAGTTTTTGCTACA 59.360 43.478 4.66 0.00 42.31 2.74
269 273 4.738252 GGGAAAAGAGTTTTTGCTACAACG 59.262 41.667 4.66 0.00 42.31 4.10
282 286 3.132925 GCTACAACGACACCCTTACAAA 58.867 45.455 0.00 0.00 0.00 2.83
285 289 2.679336 ACAACGACACCCTTACAAACAC 59.321 45.455 0.00 0.00 0.00 3.32
287 291 1.136695 ACGACACCCTTACAAACACGA 59.863 47.619 0.00 0.00 0.00 4.35
295 299 6.148811 ACACCCTTACAAACACGAATGATTAG 59.851 38.462 0.00 0.00 0.00 1.73
301 305 5.547465 ACAAACACGAATGATTAGTCTCCA 58.453 37.500 0.00 0.00 0.00 3.86
303 307 6.655003 ACAAACACGAATGATTAGTCTCCAAT 59.345 34.615 0.00 0.00 0.00 3.16
343 347 3.276846 GCACCCGCTTTCACACGT 61.277 61.111 0.00 0.00 34.30 4.49
346 350 0.233848 CACCCGCTTTCACACGTAAC 59.766 55.000 0.00 0.00 0.00 2.50
366 370 4.612264 ACACAGAAACTAACATACGGGT 57.388 40.909 0.00 0.00 0.00 5.28
367 371 4.312443 ACACAGAAACTAACATACGGGTG 58.688 43.478 0.00 0.00 0.00 4.61
368 372 4.202284 ACACAGAAACTAACATACGGGTGT 60.202 41.667 0.00 0.00 0.00 4.16
369 373 4.387862 CACAGAAACTAACATACGGGTGTC 59.612 45.833 0.00 0.00 0.00 3.67
370 374 4.039488 ACAGAAACTAACATACGGGTGTCA 59.961 41.667 0.00 0.00 0.00 3.58
371 375 5.175859 CAGAAACTAACATACGGGTGTCAT 58.824 41.667 0.00 0.00 0.00 3.06
372 376 5.063438 CAGAAACTAACATACGGGTGTCATG 59.937 44.000 0.00 0.00 0.00 3.07
379 404 3.262405 ACATACGGGTGTCATGTTTACCT 59.738 43.478 12.93 1.37 34.87 3.08
412 437 3.428862 CCAGACGTAGCACACATACATCA 60.429 47.826 0.00 0.00 0.00 3.07
442 467 4.222124 ACTTACAAGTGGGTCCATCATC 57.778 45.455 0.00 0.00 37.98 2.92
444 469 1.275666 ACAAGTGGGTCCATCATCGA 58.724 50.000 0.00 0.00 0.00 3.59
450 475 1.632018 GGGTCCATCATCGAACCCCA 61.632 60.000 9.26 0.00 44.75 4.96
457 482 0.606944 TCATCGAACCCCAAAACCCG 60.607 55.000 0.00 0.00 0.00 5.28
460 485 2.609759 CGAACCCCAAAACCCGACG 61.610 63.158 0.00 0.00 0.00 5.12
496 776 9.195411 CTAGTCTTAGTAGAAGTAGATACGTGG 57.805 40.741 0.00 0.00 30.65 4.94
501 781 4.948621 AGTAGAAGTAGATACGTGGCACTT 59.051 41.667 16.72 9.21 32.33 3.16
502 782 4.373348 AGAAGTAGATACGTGGCACTTC 57.627 45.455 16.72 18.61 43.41 3.01
504 784 3.505464 AGTAGATACGTGGCACTTCAC 57.495 47.619 16.72 10.11 0.00 3.18
506 786 4.267536 AGTAGATACGTGGCACTTCACTA 58.732 43.478 16.72 10.40 35.63 2.74
507 787 4.703575 AGTAGATACGTGGCACTTCACTAA 59.296 41.667 16.72 0.00 35.63 2.24
509 789 4.243270 AGATACGTGGCACTTCACTAAAC 58.757 43.478 16.72 0.00 35.63 2.01
510 790 1.589803 ACGTGGCACTTCACTAAACC 58.410 50.000 16.72 0.00 35.63 3.27
511 791 0.511221 CGTGGCACTTCACTAAACCG 59.489 55.000 16.72 0.00 35.63 4.44
513 793 1.798813 GTGGCACTTCACTAAACCGAG 59.201 52.381 11.13 0.00 34.98 4.63
550 852 7.775093 TGTCTGCTGAATAATGGCTTTATACTT 59.225 33.333 6.11 0.00 30.11 2.24
617 919 9.474313 AAATAATGGCTTTATACTTTGTCTCCA 57.526 29.630 6.11 0.00 30.11 3.86
623 925 5.351740 GCTTTATACTTTGTCTCCACTGGAC 59.648 44.000 0.00 0.00 0.00 4.02
683 985 0.676736 TTTTGGGCTTTAACGGGCTG 59.323 50.000 0.00 0.00 0.00 4.85
687 989 1.602605 GGCTTTAACGGGCTGGTGT 60.603 57.895 0.00 0.00 0.00 4.16
688 990 0.321830 GGCTTTAACGGGCTGGTGTA 60.322 55.000 0.00 0.00 0.00 2.90
701 1008 1.894756 GGTGTACGGGCTTGCAACA 60.895 57.895 0.00 0.00 0.00 3.33
719 1026 1.021968 CACCGGCCTTAAATACTGGC 58.978 55.000 0.00 0.00 45.42 4.85
764 1072 0.329261 CAAGCCAGGTCTCCATTCCA 59.671 55.000 0.00 0.00 0.00 3.53
765 1073 1.064166 CAAGCCAGGTCTCCATTCCAT 60.064 52.381 0.00 0.00 0.00 3.41
766 1074 2.173356 CAAGCCAGGTCTCCATTCCATA 59.827 50.000 0.00 0.00 0.00 2.74
933 1258 2.363683 GCTTCTCCCTCCACAAATCAG 58.636 52.381 0.00 0.00 0.00 2.90
987 1313 5.073965 TCTCATTCCATTCATCCATCCATCA 59.926 40.000 0.00 0.00 0.00 3.07
993 1319 0.540923 TCATCCATCCATCACGCACA 59.459 50.000 0.00 0.00 0.00 4.57
1017 1362 0.813210 GTATGTGCCTGCTGCTCTCC 60.813 60.000 0.00 0.00 42.00 3.71
1059 1404 1.150081 CATGAGCAGGATCCACCCC 59.850 63.158 15.82 0.77 40.05 4.95
1065 1410 2.041819 AGGATCCACCCCTCCGAC 60.042 66.667 15.82 0.00 40.05 4.79
1308 1659 2.235602 CTCTCCTCTCCCTCAGGCCA 62.236 65.000 5.01 0.00 0.00 5.36
1349 1705 3.439476 GCATGATCACAACAGCTTCTTCT 59.561 43.478 0.00 0.00 0.00 2.85
1385 1744 2.450609 ACTTTGCGTCTGGTCGTTAT 57.549 45.000 0.00 0.00 0.00 1.89
1393 1752 3.790288 GCGTCTGGTCGTTATTAACTCTC 59.210 47.826 5.11 0.00 0.00 3.20
1470 1829 0.390472 GAGTTGCACCGGGAGAAGAG 60.390 60.000 6.32 0.00 0.00 2.85
1943 2309 1.810412 GCCCACGTCAGTCAAGAGTTT 60.810 52.381 0.00 0.00 0.00 2.66
1999 2365 3.980442 TTACATGAACGCCGCCCCC 62.980 63.158 0.00 0.00 0.00 5.40
2052 2420 9.709600 GAGCTGTTCTTTATCTGTTTTATTAGC 57.290 33.333 0.00 0.00 0.00 3.09
2193 2592 1.012486 AAAATCCGGTCGAGTGCGTC 61.012 55.000 0.00 0.00 38.98 5.19
2194 2593 2.149803 AAATCCGGTCGAGTGCGTCA 62.150 55.000 0.00 0.00 38.98 4.35
2195 2594 2.814183 AATCCGGTCGAGTGCGTCAC 62.814 60.000 0.00 2.28 38.98 3.67
2199 2598 4.034258 GTCGAGTGCGTCACCCGA 62.034 66.667 11.24 11.24 41.83 5.14
2200 2599 3.060000 TCGAGTGCGTCACCCGAT 61.060 61.111 11.24 0.00 39.46 4.18
2201 2600 2.880879 CGAGTGCGTCACCCGATG 60.881 66.667 7.84 0.00 37.79 3.84
2207 2606 4.343581 CGTCACCCGATGCATAGG 57.656 61.111 18.25 18.25 39.56 2.57
2208 2607 1.956170 CGTCACCCGATGCATAGGC 60.956 63.158 19.63 5.80 39.56 3.93
2209 2608 1.956170 GTCACCCGATGCATAGGCG 60.956 63.158 19.63 14.80 45.35 5.52
2210 2609 2.666190 CACCCGATGCATAGGCGG 60.666 66.667 19.63 17.85 45.35 6.13
2213 2612 3.625897 CCGATGCATAGGCGGGGA 61.626 66.667 13.26 0.00 45.35 4.81
2214 2613 2.425592 CGATGCATAGGCGGGGAA 59.574 61.111 0.00 0.00 45.35 3.97
2215 2614 1.227823 CGATGCATAGGCGGGGAAA 60.228 57.895 0.00 0.00 45.35 3.13
2216 2615 0.817634 CGATGCATAGGCGGGGAAAA 60.818 55.000 0.00 0.00 45.35 2.29
2217 2616 1.398692 GATGCATAGGCGGGGAAAAA 58.601 50.000 0.00 0.00 45.35 1.94
2288 2687 2.626743 CCTCAGGATGCCAATTCCATTC 59.373 50.000 0.00 0.00 35.59 2.67
2289 2688 2.626743 CTCAGGATGCCAATTCCATTCC 59.373 50.000 0.00 0.00 35.59 3.01
2321 2720 7.234355 AGTTGAGAAATTCAGTGGGATTAGTT 58.766 34.615 0.00 0.00 37.07 2.24
2334 2733 5.701224 TGGGATTAGTTGATACCCAATTCC 58.299 41.667 0.00 0.00 46.06 3.01
2335 2734 5.194740 TGGGATTAGTTGATACCCAATTCCA 59.805 40.000 0.00 0.00 46.06 3.53
2337 2736 6.782494 GGGATTAGTTGATACCCAATTCCATT 59.218 38.462 0.00 0.00 40.20 3.16
2338 2737 7.290014 GGGATTAGTTGATACCCAATTCCATTT 59.710 37.037 0.00 0.00 40.20 2.32
2339 2738 8.360390 GGATTAGTTGATACCCAATTCCATTTC 58.640 37.037 0.00 0.00 37.08 2.17
2340 2739 7.654022 TTAGTTGATACCCAATTCCATTTCC 57.346 36.000 0.00 0.00 37.08 3.13
2341 2740 5.588845 AGTTGATACCCAATTCCATTTCCA 58.411 37.500 0.00 0.00 37.08 3.53
2342 2741 5.658190 AGTTGATACCCAATTCCATTTCCAG 59.342 40.000 0.00 0.00 37.08 3.86
2343 2742 5.205517 TGATACCCAATTCCATTTCCAGT 57.794 39.130 0.00 0.00 0.00 4.00
2344 2743 4.955450 TGATACCCAATTCCATTTCCAGTG 59.045 41.667 0.00 0.00 0.00 3.66
2346 2745 2.111613 ACCCAATTCCATTTCCAGTGGA 59.888 45.455 8.12 8.12 43.77 4.02
2347 2746 2.762327 CCCAATTCCATTTCCAGTGGAG 59.238 50.000 12.67 0.38 45.85 3.86
2348 2747 3.434309 CCAATTCCATTTCCAGTGGAGT 58.566 45.455 12.67 2.45 45.85 3.85
2349 2748 3.834231 CCAATTCCATTTCCAGTGGAGTT 59.166 43.478 12.67 0.70 45.85 3.01
2445 2845 1.883275 CAACCCAACAGGCGAACAATA 59.117 47.619 0.00 0.00 40.58 1.90
2492 2893 1.512694 GCCCTAGTTGTTGGCATGC 59.487 57.895 9.90 9.90 44.70 4.06
2493 2894 1.948721 GCCCTAGTTGTTGGCATGCC 61.949 60.000 30.54 30.54 44.70 4.40
2494 2895 0.611618 CCCTAGTTGTTGGCATGCCA 60.612 55.000 35.59 35.59 45.63 4.92
2495 2896 1.477553 CCTAGTTGTTGGCATGCCAT 58.522 50.000 38.78 25.85 46.64 4.40
2643 3050 3.039452 TTGCAATCCAGAGCAAGCA 57.961 47.368 0.00 0.00 44.98 3.91
2780 3195 1.881252 GGCGTACATACCAGGCACG 60.881 63.158 0.00 0.00 35.78 5.34
2808 3223 6.640907 GCGTAAAAGATGAAAATGACCAAAGT 59.359 34.615 0.00 0.00 0.00 2.66
2809 3224 7.148967 GCGTAAAAGATGAAAATGACCAAAGTC 60.149 37.037 0.00 0.00 43.83 3.01
2865 3280 0.555769 AGGGACAAAAGTTGCCCAGA 59.444 50.000 17.25 0.00 44.42 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.170061 TGGAGGAAAAAGATATCAGAGGAAAAA 58.830 33.333 5.32 0.00 0.00 1.94
20 21 7.611855 GTGGAGGAAAAAGATATCAGAGGAAAA 59.388 37.037 5.32 0.00 0.00 2.29
21 22 7.037297 AGTGGAGGAAAAAGATATCAGAGGAAA 60.037 37.037 5.32 0.00 0.00 3.13
22 23 6.445139 AGTGGAGGAAAAAGATATCAGAGGAA 59.555 38.462 5.32 0.00 0.00 3.36
23 24 5.966935 AGTGGAGGAAAAAGATATCAGAGGA 59.033 40.000 5.32 0.00 0.00 3.71
24 25 6.126940 TGAGTGGAGGAAAAAGATATCAGAGG 60.127 42.308 5.32 0.00 0.00 3.69
25 26 6.882656 TGAGTGGAGGAAAAAGATATCAGAG 58.117 40.000 5.32 0.00 0.00 3.35
26 27 6.874278 TGAGTGGAGGAAAAAGATATCAGA 57.126 37.500 5.32 0.00 0.00 3.27
27 28 7.278135 TGATGAGTGGAGGAAAAAGATATCAG 58.722 38.462 5.32 0.00 0.00 2.90
28 29 7.199167 TGATGAGTGGAGGAAAAAGATATCA 57.801 36.000 5.32 0.00 0.00 2.15
29 30 8.688747 AATGATGAGTGGAGGAAAAAGATATC 57.311 34.615 0.00 0.00 0.00 1.63
30 31 9.484806 AAAATGATGAGTGGAGGAAAAAGATAT 57.515 29.630 0.00 0.00 0.00 1.63
31 32 8.742777 CAAAATGATGAGTGGAGGAAAAAGATA 58.257 33.333 0.00 0.00 0.00 1.98
32 33 7.234166 ACAAAATGATGAGTGGAGGAAAAAGAT 59.766 33.333 0.00 0.00 0.00 2.40
33 34 6.550854 ACAAAATGATGAGTGGAGGAAAAAGA 59.449 34.615 0.00 0.00 0.00 2.52
34 35 6.643770 CACAAAATGATGAGTGGAGGAAAAAG 59.356 38.462 0.00 0.00 0.00 2.27
35 36 6.514947 CACAAAATGATGAGTGGAGGAAAAA 58.485 36.000 0.00 0.00 0.00 1.94
36 37 5.509501 GCACAAAATGATGAGTGGAGGAAAA 60.510 40.000 0.00 0.00 32.80 2.29
37 38 4.022068 GCACAAAATGATGAGTGGAGGAAA 60.022 41.667 0.00 0.00 32.80 3.13
38 39 3.507233 GCACAAAATGATGAGTGGAGGAA 59.493 43.478 0.00 0.00 32.80 3.36
39 40 3.084039 GCACAAAATGATGAGTGGAGGA 58.916 45.455 0.00 0.00 32.80 3.71
40 41 2.165030 GGCACAAAATGATGAGTGGAGG 59.835 50.000 0.00 0.00 32.80 4.30
41 42 2.821378 TGGCACAAAATGATGAGTGGAG 59.179 45.455 0.00 0.00 31.92 3.86
42 43 2.874014 TGGCACAAAATGATGAGTGGA 58.126 42.857 0.00 0.00 31.92 4.02
57 58 6.149474 AGACAGTGTTATCTTAAACATGGCAC 59.851 38.462 0.00 0.00 41.18 5.01
58 59 6.237901 AGACAGTGTTATCTTAAACATGGCA 58.762 36.000 0.00 0.00 41.18 4.92
59 60 6.743575 AGACAGTGTTATCTTAAACATGGC 57.256 37.500 0.00 0.00 41.18 4.40
63 64 9.431887 GGTCATAAGACAGTGTTATCTTAAACA 57.568 33.333 0.00 0.00 46.80 2.83
64 65 8.880750 GGGTCATAAGACAGTGTTATCTTAAAC 58.119 37.037 0.00 4.39 46.80 2.01
65 66 8.598916 TGGGTCATAAGACAGTGTTATCTTAAA 58.401 33.333 0.00 0.00 46.80 1.52
66 67 8.141298 TGGGTCATAAGACAGTGTTATCTTAA 57.859 34.615 0.00 0.00 46.80 1.85
67 68 7.727578 TGGGTCATAAGACAGTGTTATCTTA 57.272 36.000 0.00 1.12 46.80 2.10
68 69 6.620877 TGGGTCATAAGACAGTGTTATCTT 57.379 37.500 0.00 0.00 46.80 2.40
69 70 6.814954 ATGGGTCATAAGACAGTGTTATCT 57.185 37.500 0.00 0.00 46.80 1.98
70 71 6.238484 GCAATGGGTCATAAGACAGTGTTATC 60.238 42.308 0.00 0.00 46.80 1.75
71 72 5.590259 GCAATGGGTCATAAGACAGTGTTAT 59.410 40.000 0.00 0.00 46.80 1.89
72 73 4.941263 GCAATGGGTCATAAGACAGTGTTA 59.059 41.667 0.00 0.00 46.80 2.41
73 74 3.758554 GCAATGGGTCATAAGACAGTGTT 59.241 43.478 0.00 0.00 46.80 3.32
74 75 3.244875 TGCAATGGGTCATAAGACAGTGT 60.245 43.478 0.00 0.00 46.80 3.55
75 76 3.127548 GTGCAATGGGTCATAAGACAGTG 59.872 47.826 0.00 0.00 46.80 3.66
76 77 3.244875 TGTGCAATGGGTCATAAGACAGT 60.245 43.478 0.00 0.00 46.80 3.55
77 78 3.346315 TGTGCAATGGGTCATAAGACAG 58.654 45.455 0.00 0.00 46.80 3.51
78 79 3.431673 TGTGCAATGGGTCATAAGACA 57.568 42.857 0.00 0.00 46.80 3.41
79 80 3.489738 GCATGTGCAATGGGTCATAAGAC 60.490 47.826 0.00 0.00 41.56 3.01
80 81 2.689471 GCATGTGCAATGGGTCATAAGA 59.311 45.455 0.00 0.00 41.59 2.10
81 82 2.691526 AGCATGTGCAATGGGTCATAAG 59.308 45.455 7.83 0.00 45.16 1.73
82 83 2.689471 GAGCATGTGCAATGGGTCATAA 59.311 45.455 7.83 0.00 45.16 1.90
83 84 2.092267 AGAGCATGTGCAATGGGTCATA 60.092 45.455 7.83 0.00 45.16 2.15
84 85 1.108776 GAGCATGTGCAATGGGTCAT 58.891 50.000 7.83 0.00 45.16 3.06
85 86 0.038599 AGAGCATGTGCAATGGGTCA 59.961 50.000 7.83 0.00 45.16 4.02
86 87 1.180029 AAGAGCATGTGCAATGGGTC 58.820 50.000 7.83 7.23 45.16 4.46
87 88 2.291153 ACTAAGAGCATGTGCAATGGGT 60.291 45.455 7.83 0.00 45.16 4.51
88 89 2.372264 ACTAAGAGCATGTGCAATGGG 58.628 47.619 7.83 0.00 45.16 4.00
89 90 4.445452 AAACTAAGAGCATGTGCAATGG 57.555 40.909 7.83 0.00 45.16 3.16
111 112 6.293955 CGGATAAGAGCAAAGTCAAGGAAAAA 60.294 38.462 0.00 0.00 0.00 1.94
112 113 5.181245 CGGATAAGAGCAAAGTCAAGGAAAA 59.819 40.000 0.00 0.00 0.00 2.29
113 114 4.695455 CGGATAAGAGCAAAGTCAAGGAAA 59.305 41.667 0.00 0.00 0.00 3.13
114 115 4.020573 TCGGATAAGAGCAAAGTCAAGGAA 60.021 41.667 0.00 0.00 0.00 3.36
115 116 3.513912 TCGGATAAGAGCAAAGTCAAGGA 59.486 43.478 0.00 0.00 0.00 3.36
116 117 3.861840 TCGGATAAGAGCAAAGTCAAGG 58.138 45.455 0.00 0.00 0.00 3.61
122 123 4.212847 CACATCCATCGGATAAGAGCAAAG 59.787 45.833 0.00 0.00 40.98 2.77
124 125 3.494924 CCACATCCATCGGATAAGAGCAA 60.495 47.826 0.00 0.00 40.98 3.91
143 144 8.235359 AGTATACCAAGAACACTAGATACCAC 57.765 38.462 0.00 0.00 0.00 4.16
157 158 9.899661 AGCACATAACATTTTAGTATACCAAGA 57.100 29.630 0.00 0.00 0.00 3.02
160 161 9.674068 TCAAGCACATAACATTTTAGTATACCA 57.326 29.630 0.00 0.00 0.00 3.25
172 173 6.519679 ACATCACAATCAAGCACATAACAT 57.480 33.333 0.00 0.00 0.00 2.71
174 175 8.915871 ATAAACATCACAATCAAGCACATAAC 57.084 30.769 0.00 0.00 0.00 1.89
178 179 8.659925 AAAAATAAACATCACAATCAAGCACA 57.340 26.923 0.00 0.00 0.00 4.57
225 229 3.258123 CCCCTTAATCAATAAATGGGGCG 59.742 47.826 0.00 0.00 40.46 6.13
226 230 3.582647 CCCCCTTAATCAATAAATGGGGC 59.417 47.826 8.58 0.00 43.40 5.80
233 237 8.966155 AAACTCTTTTCCCCCTTAATCAATAA 57.034 30.769 0.00 0.00 0.00 1.40
241 245 4.552674 AGCAAAAACTCTTTTCCCCCTTA 58.447 39.130 0.00 0.00 32.24 2.69
249 253 5.798434 GTGTCGTTGTAGCAAAAACTCTTTT 59.202 36.000 0.00 0.00 35.02 2.27
266 270 1.935199 CGTGTTTGTAAGGGTGTCGTT 59.065 47.619 0.00 0.00 0.00 3.85
269 273 3.810941 TCATTCGTGTTTGTAAGGGTGTC 59.189 43.478 0.00 0.00 0.00 3.67
282 286 8.964476 AATTATTGGAGACTAATCATTCGTGT 57.036 30.769 0.00 0.00 0.00 4.49
337 341 5.705813 TGTTAGTTTCTGTGTTACGTGTG 57.294 39.130 0.00 0.00 0.00 3.82
343 347 5.927689 CACCCGTATGTTAGTTTCTGTGTTA 59.072 40.000 0.00 0.00 0.00 2.41
346 350 4.312443 ACACCCGTATGTTAGTTTCTGTG 58.688 43.478 0.00 0.00 0.00 3.66
366 370 6.228258 GGTCTACTTTCAGGTAAACATGACA 58.772 40.000 0.00 0.00 36.31 3.58
367 371 5.642491 GGGTCTACTTTCAGGTAAACATGAC 59.358 44.000 0.00 0.00 36.31 3.06
368 372 5.308497 TGGGTCTACTTTCAGGTAAACATGA 59.692 40.000 0.00 0.00 34.60 3.07
369 373 5.556915 TGGGTCTACTTTCAGGTAAACATG 58.443 41.667 0.00 0.00 0.00 3.21
370 374 5.546499 TCTGGGTCTACTTTCAGGTAAACAT 59.454 40.000 0.00 0.00 0.00 2.71
371 375 4.903049 TCTGGGTCTACTTTCAGGTAAACA 59.097 41.667 0.00 0.00 0.00 2.83
372 376 5.236282 GTCTGGGTCTACTTTCAGGTAAAC 58.764 45.833 0.00 0.00 0.00 2.01
379 404 2.490903 GCTACGTCTGGGTCTACTTTCA 59.509 50.000 0.00 0.00 0.00 2.69
429 454 3.080647 GGTTCGATGATGGACCCAC 57.919 57.895 0.00 0.00 0.00 4.61
434 459 2.442413 GTTTTGGGGTTCGATGATGGA 58.558 47.619 0.00 0.00 0.00 3.41
438 463 0.606944 CGGGTTTTGGGGTTCGATGA 60.607 55.000 0.00 0.00 0.00 2.92
441 466 1.227913 GTCGGGTTTTGGGGTTCGA 60.228 57.895 0.00 0.00 0.00 3.71
442 467 2.609759 CGTCGGGTTTTGGGGTTCG 61.610 63.158 0.00 0.00 0.00 3.95
444 469 2.908428 GCGTCGGGTTTTGGGGTT 60.908 61.111 0.00 0.00 0.00 4.11
450 475 2.346099 CATTTCATGCGTCGGGTTTT 57.654 45.000 0.00 0.00 0.00 2.43
481 761 3.762288 TGAAGTGCCACGTATCTACTTCT 59.238 43.478 22.96 2.34 44.53 2.85
496 776 4.806342 TTTTCTCGGTTTAGTGAAGTGC 57.194 40.909 0.00 0.00 0.00 4.40
591 893 9.474313 TGGAGACAAAGTATAAAGCCATTATTT 57.526 29.630 0.00 0.00 37.44 1.40
592 894 8.903820 GTGGAGACAAAGTATAAAGCCATTATT 58.096 33.333 0.00 0.00 46.06 1.40
593 895 8.275040 AGTGGAGACAAAGTATAAAGCCATTAT 58.725 33.333 0.00 0.00 46.06 1.28
594 896 7.552687 CAGTGGAGACAAAGTATAAAGCCATTA 59.447 37.037 0.00 0.00 46.06 1.90
617 919 0.251354 TAGTCGCTACTCCGTCCAGT 59.749 55.000 0.00 0.00 37.15 4.00
623 925 1.152989 AGTCGCTAGTCGCTACTCCG 61.153 60.000 0.00 0.00 40.25 4.63
635 937 1.377366 CCGGCTCTCTTCAGTCGCTA 61.377 60.000 0.00 0.00 40.30 4.26
636 938 2.705821 CCGGCTCTCTTCAGTCGCT 61.706 63.158 0.00 0.00 40.30 4.93
637 939 2.202676 CCGGCTCTCTTCAGTCGC 60.203 66.667 0.00 0.00 40.30 5.19
638 940 1.027255 TCTCCGGCTCTCTTCAGTCG 61.027 60.000 0.00 0.00 41.34 4.18
639 941 0.454196 GTCTCCGGCTCTCTTCAGTC 59.546 60.000 0.00 0.00 0.00 3.51
640 942 1.309499 CGTCTCCGGCTCTCTTCAGT 61.309 60.000 0.00 0.00 0.00 3.41
641 943 1.431440 CGTCTCCGGCTCTCTTCAG 59.569 63.158 0.00 0.00 0.00 3.02
683 985 1.894756 TGTTGCAAGCCCGTACACC 60.895 57.895 0.00 0.00 0.00 4.16
687 989 2.666862 CGGTGTTGCAAGCCCGTA 60.667 61.111 22.46 0.00 35.78 4.02
701 1008 3.489391 GCCAGTATTTAAGGCCGGT 57.511 52.632 1.90 0.00 42.58 5.28
719 1026 0.809636 TGCTGGACAACGAGTGTGTG 60.810 55.000 1.25 0.00 41.96 3.82
721 1028 0.514255 CATGCTGGACAACGAGTGTG 59.486 55.000 1.25 0.00 41.96 3.82
722 1029 1.230635 GCATGCTGGACAACGAGTGT 61.231 55.000 11.37 0.00 45.74 3.55
764 1072 4.628715 GCGGATGGATGGGTATGGAATTAT 60.629 45.833 0.00 0.00 0.00 1.28
765 1073 3.308117 GCGGATGGATGGGTATGGAATTA 60.308 47.826 0.00 0.00 0.00 1.40
766 1074 2.555227 GCGGATGGATGGGTATGGAATT 60.555 50.000 0.00 0.00 0.00 2.17
842 1160 1.561717 CGCGTGTGGAATGGTTCGAA 61.562 55.000 0.00 0.00 0.00 3.71
952 1277 0.536006 GGAATGAGATGGGCGGGAAG 60.536 60.000 0.00 0.00 0.00 3.46
993 1319 1.146930 CAGCAGGCACATACGGGAT 59.853 57.895 0.00 0.00 0.00 3.85
1123 1474 4.345962 CACCGTGTACACCGCCGA 62.346 66.667 20.11 0.00 0.00 5.54
1308 1659 1.026182 CATGCATGCACGGTACCTGT 61.026 55.000 25.37 6.96 0.00 4.00
1349 1705 2.157834 AGTTTGATGGCGTTACGTGA 57.842 45.000 6.63 0.00 0.00 4.35
1385 1744 5.822204 AGCAGAGAGAGTAAGGAGAGTTAA 58.178 41.667 0.00 0.00 0.00 2.01
1393 1752 2.096819 GTCACGAGCAGAGAGAGTAAGG 59.903 54.545 0.00 0.00 0.00 2.69
1644 2003 2.186384 CTGGAGAAGCAGCCCTCG 59.814 66.667 6.38 0.00 0.00 4.63
1862 2224 2.828549 CCATTGGTGCGTAGGGCC 60.829 66.667 0.00 0.00 42.61 5.80
1922 2287 1.115930 ACTCTTGACTGACGTGGGCT 61.116 55.000 0.00 0.00 0.00 5.19
1943 2309 3.216187 TCATCCAACCAAAGGACGAAA 57.784 42.857 0.00 0.00 38.13 3.46
1999 2365 2.099141 TCGCAATGTCTTCAGGAAGG 57.901 50.000 9.03 0.00 38.88 3.46
2052 2420 5.141568 CCGTACAAATGACTAAAAACCACG 58.858 41.667 0.00 0.00 0.00 4.94
2166 2537 4.630069 CACTCGACCGGATTTTATCAAAGT 59.370 41.667 9.46 0.00 0.00 2.66
2193 2592 2.666190 CCGCCTATGCATCGGGTG 60.666 66.667 18.23 18.85 39.52 4.61
2196 2595 2.674563 TTTCCCCGCCTATGCATCGG 62.675 60.000 16.30 16.30 42.58 4.18
2197 2596 0.817634 TTTTCCCCGCCTATGCATCG 60.818 55.000 0.19 0.00 37.32 3.84
2198 2597 1.398692 TTTTTCCCCGCCTATGCATC 58.601 50.000 0.19 0.00 37.32 3.91
2199 2598 3.605946 TTTTTCCCCGCCTATGCAT 57.394 47.368 3.79 3.79 37.32 3.96
2236 2635 8.726988 AGTGTGCGTGTCAGTATATTTATTTTT 58.273 29.630 0.00 0.00 0.00 1.94
2237 2636 8.175069 CAGTGTGCGTGTCAGTATATTTATTTT 58.825 33.333 0.00 0.00 0.00 1.82
2238 2637 7.333423 ACAGTGTGCGTGTCAGTATATTTATTT 59.667 33.333 0.00 0.00 0.00 1.40
2239 2638 6.816640 ACAGTGTGCGTGTCAGTATATTTATT 59.183 34.615 0.00 0.00 0.00 1.40
2240 2639 6.255670 CACAGTGTGCGTGTCAGTATATTTAT 59.744 38.462 10.97 0.00 0.00 1.40
2241 2640 5.575218 CACAGTGTGCGTGTCAGTATATTTA 59.425 40.000 10.97 0.00 0.00 1.40
2288 2687 3.754965 TGAATTTCTCAACTCCACTGGG 58.245 45.455 0.00 0.00 0.00 4.45
2289 2688 4.214971 CACTGAATTTCTCAACTCCACTGG 59.785 45.833 0.00 0.00 32.17 4.00
2321 2720 4.955450 CACTGGAAATGGAATTGGGTATCA 59.045 41.667 0.00 0.00 36.10 2.15
2331 2730 3.394274 TCTCAACTCCACTGGAAATGGAA 59.606 43.478 0.00 0.00 45.67 3.53
2332 2731 2.978978 TCTCAACTCCACTGGAAATGGA 59.021 45.455 0.00 0.00 44.20 3.41
2334 2733 5.336213 CCATTTCTCAACTCCACTGGAAATG 60.336 44.000 15.10 15.10 44.16 2.32
2335 2734 4.768968 CCATTTCTCAACTCCACTGGAAAT 59.231 41.667 0.00 0.00 34.90 2.17
2337 2736 3.138283 ACCATTTCTCAACTCCACTGGAA 59.862 43.478 0.00 0.00 0.00 3.53
2338 2737 2.711009 ACCATTTCTCAACTCCACTGGA 59.289 45.455 0.00 0.00 0.00 3.86
2339 2738 3.146104 ACCATTTCTCAACTCCACTGG 57.854 47.619 0.00 0.00 0.00 4.00
2340 2739 3.304928 GCAACCATTTCTCAACTCCACTG 60.305 47.826 0.00 0.00 0.00 3.66
2341 2740 2.887152 GCAACCATTTCTCAACTCCACT 59.113 45.455 0.00 0.00 0.00 4.00
2342 2741 2.029918 GGCAACCATTTCTCAACTCCAC 60.030 50.000 0.00 0.00 0.00 4.02
2343 2742 2.158475 AGGCAACCATTTCTCAACTCCA 60.158 45.455 0.00 0.00 37.17 3.86
2344 2743 2.519013 AGGCAACCATTTCTCAACTCC 58.481 47.619 0.00 0.00 37.17 3.85
2346 2745 3.493176 GCAAAGGCAACCATTTCTCAACT 60.493 43.478 0.00 0.00 40.72 3.16
2347 2746 2.802247 GCAAAGGCAACCATTTCTCAAC 59.198 45.455 0.00 0.00 40.72 3.18
2348 2747 2.224257 GGCAAAGGCAACCATTTCTCAA 60.224 45.455 0.00 0.00 43.71 3.02
2349 2748 1.344114 GGCAAAGGCAACCATTTCTCA 59.656 47.619 0.00 0.00 43.71 3.27
2432 2832 2.166829 TGCCATTTATTGTTCGCCTGT 58.833 42.857 0.00 0.00 0.00 4.00
2445 2845 1.665599 GCGCAGTTGCTTGCCATTT 60.666 52.632 0.30 0.00 41.01 2.32
2490 2891 2.681064 GAGGGCTTGGCAATGGCA 60.681 61.111 5.05 5.05 43.71 4.92
2491 2892 3.464494 GGAGGGCTTGGCAATGGC 61.464 66.667 0.00 7.51 40.13 4.40
2492 2893 2.037687 TGGAGGGCTTGGCAATGG 59.962 61.111 0.00 0.00 0.00 3.16
2493 2894 2.056223 CCTGGAGGGCTTGGCAATG 61.056 63.158 0.00 0.00 0.00 2.82
2494 2895 2.240918 TCCTGGAGGGCTTGGCAAT 61.241 57.895 0.00 0.00 35.41 3.56
2495 2896 2.858476 TCCTGGAGGGCTTGGCAA 60.858 61.111 0.00 0.00 35.41 4.52
2640 3047 3.659183 AGAATATTTCTGCCCTGTGCT 57.341 42.857 0.00 0.00 42.00 4.40
2641 3048 3.950395 AGAAGAATATTTCTGCCCTGTGC 59.050 43.478 0.00 0.00 40.59 4.57
2642 3049 4.578105 GGAGAAGAATATTTCTGCCCTGTG 59.422 45.833 0.00 0.00 40.59 3.66
2643 3050 4.228210 TGGAGAAGAATATTTCTGCCCTGT 59.772 41.667 6.29 0.00 42.73 4.00
2780 3195 4.558860 GGTCATTTTCATCTTTTACGCTGC 59.441 41.667 0.00 0.00 0.00 5.25
2808 3223 2.431683 GCTGTGGAGCTTGGGTGA 59.568 61.111 0.00 0.00 42.52 4.02
2809 3224 2.674380 GGCTGTGGAGCTTGGGTG 60.674 66.667 0.00 0.00 45.44 4.61
2810 3225 3.177884 TGGCTGTGGAGCTTGGGT 61.178 61.111 0.00 0.00 45.44 4.51
2811 3226 2.360852 CTGGCTGTGGAGCTTGGG 60.361 66.667 0.00 0.00 45.44 4.12
2812 3227 0.323178 ATTCTGGCTGTGGAGCTTGG 60.323 55.000 0.00 0.00 45.44 3.61
2813 3228 2.012673 GTATTCTGGCTGTGGAGCTTG 58.987 52.381 0.00 0.00 45.44 4.01
2814 3229 1.406069 CGTATTCTGGCTGTGGAGCTT 60.406 52.381 0.00 0.00 45.44 3.74
2815 3230 0.176680 CGTATTCTGGCTGTGGAGCT 59.823 55.000 0.00 0.00 45.44 4.09
2816 3231 1.432270 GCGTATTCTGGCTGTGGAGC 61.432 60.000 0.00 0.00 45.40 4.70
2817 3232 0.108186 TGCGTATTCTGGCTGTGGAG 60.108 55.000 0.00 0.00 0.00 3.86
2833 3248 0.321564 TGTCCCTTTCATCCTGTGCG 60.322 55.000 0.00 0.00 0.00 5.34
2865 3280 1.639298 GCTGAATTCGCTTGCGGAGT 61.639 55.000 15.10 5.44 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.