>input_sequence_65992
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----------------------------------------------------------------ATGTGCCTGCTGCTCT
CCGGCAGCACCAGCGGATCAGCCAGCATGAGCAGGATCCACCCCTCCGACCGCGGCGACGGCGCCCGCCGCGCGGCGCGG
ACGGC------GGCGGAGCGGCAGCGGCAGCAGTCGGCGGTGTACACGGTGTGGAAGAGGTCCAGCATGGGGTTCCAGGG
CACCGACGGCTTCTCCGTCTACGACGCCGCCGGGAGGCTCGCCTTCCGCGTCGACAACTACGCCCGCCGCCCCAAGGCCT
TCGCCGGCGAGCTGCTGCTCATGGACGGCCGCGGCGCCCCTCTCCTCTCCCTCAGGCCACAGGTAC-----CGTGCATGC
ATGCATGATCACAACAGCTTCTTCTCACGTA---ACGCCATCAAACTTTGCGTCTGGTCGTTATTAACTCTCCTTACTCT
CTCTGCTCGTGACAGATCTTTAGCCTGCACGACCGATGGAACTGCTACAGAGTTGCACCGGGAGAAGAGGGCTGCCCGGA
CACGGACAGGAGCTCCTCCGCGCAGCAGCTCTTCTCCATGCGGAAGTGCGCCGCTCTGCAGAGCACGGACGACGCAGAGG
TCCACATGTCGTCGGCCTCGACGGCGACGACGTCAGGGCGCGGCTGCCGGGCTCCGCCTTCCCCTCCTCCCGGCTACCGC
GTCGAGGGCTGCTTCTCCAGGAGGAGCTGCAAGATCACAAGGAGCGACGGCCAGGAGGCGGCACGGATACTGAGGAAGAA
AGCCGGTGGACCTACGGCG---GCAGCGGCGTCGTCAAGGCCCGTCGCCCTCGGCGACGACGTGTTCAGCCTGGTCGTTC
GGCCGGGCGTCGATGCCGCCACGGTCATGGCTATTGTCGTTGTCATGGACCGGATCTGCCGGAGGCCCTACGCACCAATG
GCGTGCTCTTCACAGTAA--------------------------------------------------------------
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>chr5D_1_TraesCS5D01G147400
AATTCATAGAACGCAATTTTTTTTCCTCTGATATCTTTTTCCTCCACTCATCATTTTGTGCCATGTTTAAGATAACACTG
TCTTATGACCCATTGCACATGCTCTTAGTTTTTTTTCCTTGACTTTGCTCTTATCCGATGGATGTGGTATCTAGTGTTCT
TGGTATACTAAAATGTTATGTGCTTGATTGTGATGTTTATTTTTT---GAAACGGAGGCATAAGCTTTCGCCCCATTTAT
TGATTAAGGGGGAAAAGAGTTTTTGCTACAACGACACCCTTACAAACACGAATGATTAGTCTCCAATAATTATATTCCCT
ACCTTCTTAGCACCCGCTTTCACACGTAACACAGAAACTAACATACGGGTGTCATG---------------------TTT
ACCTGAAAGTAGACCCAGACGTAGCACACATACATCAATTTACTCACTTACAAGTGGGTCCATCATCGAACCCCAAAACC
CGACGCATGAAATGCTAGTCT-----------------------------------------------------------
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------------------------------------TAGTAGAAGTAGATACGTGGCACTTCACTAAACCGAG-------
---------------AAAAAATGGCTGTCTGCTGAATAATGGCTTTATACTTTTTTTAGGTGTATAATGGCTTTATACTT
TTTCTTTGAGAAAAATAATGGCTTTATACTTTGTCTCCACTGGACGGAGTAGCGACTAGCGACTGAAGAGAGCCGGAGAC
GGCACTTTTGGGCTTTAACGGGCTGGTGTA-----CGGGCTTGCAACACCGGCCTTAAATACTGGCACA-CACTCGTTGT
CCAGCATGCATGCAAGCCAGGTCTCCATTCCATAATTCCATACCCATCCATCCGCAGCCATCCTCGATCGAGCGCCCGCC
CCCTCACGACACCCGCGCCCCTACT----------CTCGTTCGAACCATTCCACACGCGCACGCACACGTACAC------
-CGATCGCAATCGACTCGCGCGCGCGCGCGCACGCTCGCTTCTCCCTCCACAAATCAGGAGCCAAGCACCACGCTGCTTC
CCGCCCATCTCATTCC-ATTCATCCATCCATCACGCACAT-------------------CCCGTATGTGCCTGCTGCTCT
CCGGCAGCACCAGCGGATCAGCCAGCATGAGCAGGATCCACCCCTCCGACCGCGGCGACGGCGCCCGCCGCGCGGCGCGG
ACGGC------GGCGGAGCGGCAGCGGCAGCAGTCGGCGGTGTACACGGTGTGGAAGAGGTCCAGCATGGGGTTCCAGGG
CACCGACGGCTTCTCCGTCTACGACGCCGCCGGGAGGCTCGCCTTCCGCGTCGACAACTACGCCCGCCGCCCCAAGGCCT
TCGCCGGCGAGCTGCTGCTCATGGACGGCCGCGGCGCCCCTCTCCTCTCCCTCAGGCCACAGGTAC-----CGTGCATGC
ATGCATGATCACAACAGCTTCTTCTCACGTA---ACGCCATCAAACTTTGCGTCTGGTCGTTATTAACTCTCCTTACTCT
CTCTGCTCGTGACAGATCTTTAGCCTGCACGACCGATGGAACTGCTACAGAGTTGCACCGGGAGAAGAGGGCTGCCCGGA
CACGGACAGGAGCTCCTCCGCGCAGCAGCTCTTCTCCATGCGGAAGTGCGCCGCTCTGCAGAGCACGGACGACGCAGAGG
TCCACATGTCGTCGGCCTCGACGGCGACGACGTCAGGGCGCGGCTGCCGGGCTCCGCCTTCCCCTCCTCCCGGCTACCGC
GTCGAGGGCTGCTTCTCCAGGAGGAGCTGCAAGATCACAAGGAGCGACGGCCAGGAGGCGGCACGGATACTGAGGAAGAA
AGCCGGTGGACCTACGGCG---GCAGCGGCGTCGTCAAGGCCCGTCGCCCTCGGCGACGACGTGTTCAGCCTGGTCGTTC
GGCCGGGCGTCGATGCCGCCACGGTCATGGCTATTGTCGTTGTCATGGACCGGATCTGCCGGAGGCCCTACGCACCAATG
GCGTGCTCTTCACAGTAAC---CAATAGCTACTGTACTAGACGGTGAGCCCACGTCAGTCAAGAG-TTTTTCGTCCTTTG
GTTGGATGAATCGGAGAACCGCGGCGTTACATGAACGCCGCCCCCCTTCCTGAAGACATTGCGATGTCGAAGAGCTGTTC
TTTATCTGTTTTATTA--GCGTGGTTTTTAGTCATTTGTACGGGTTGTAAAATAG---TAGCAGTACCGTCATGCCTCAA
AGTGGCATTTGCTGTCATTTTGTAAGCTGATTTGAGCATCAAATATCTTGAAAATCACTTTGATAAAATCCGGTCGAGTG
CG----------------------------TCACCCGATGCATAGGCGGGGAAAAAAAACTTGTGTTGCGTATAAAAAAT
AAATATACTGACACGCACACTGTGACCTCAGGATGCCAATTCCATTCCCAGTGGAGTTGAGAAATTCAGTGGGATTAGTT
GATACCCAATTCCATTTCCAGTGGAGTTGAGAAATGGTTGCCTTTGCCGTGCATCTGCCGAAGGAGGAGGAGACCTACGC
CACGTTCCAACCAACATGTTGGG-CAACCCAACAGGCGAACAATAAATG-GCAAGCAACTGCGCCAAAGCGACGGCCCTA
GTTGTTGGCATGCCATT------GCCAAGCCCTCCAGGACACACGACCACGACGGGGAGGAAATTACCTGGTGCAGGTTA
CCTAGTACGGAGGCAACGAATCCAACACTGACCACTCACCGCTTGGCAAAGACACCAGCAGATGTGGCGAATTGCAATCC
AGAGCAAGCACAGGG----CAGAAATATTCTTCTCCATCAGCACATCCTATCATGTCATGTGGCATCCAGCCAGGGGCAT
CCGGTGAGACAAAAGCCTTCTTTCCGCTGCCACAAGAACAAAGGTCCTCTTTGGCGTACATACC----AGGCACGCAGCG
TAAAAGATGAAAATGACCAAAGTCACCCAAGCTCCACAGCCAGAATACGCACAGGATGAAAGGGACAAAAGTTGCCCAGA
CTCCGCAAGCGAATTCAGCCGTTACCTGAGC
>chr5B_108
GTTATTATTTT---------------------------------------------------------------------
-------------------------------------CTTGATTGTGCTCTTATCCGATGGATATGGTATCTAGTGTGCT
AGGTATACTAAATTATTACCTGCTTAACCGTGATGTCTTTTTTTTTACGAAACAGAGGCATAAGCTTTGCCCCCATCTAT
TGATGAAGGGGGGAAAGAGTTTTTGCTACGACAACACCCTTACAACCATGGATGATTACTCTCCCAAAATTATATTCCCT
ACCTTTTTAGCACCCGCTTTTACACGCAATACAGAAACTAACATACGGGGTGTCGCGTTTACCCGAAAGTAAACCCATTT
ACCCGAAAGTAGACCCAGACGTAGCACACATACATCGATTTACTCACTTACAAATGGGCCCACCAATG-ACCCCCAAACC
CAACACATGAAATGCTAGTCTTGTAGAAGACTAGCCACAATGGATAGTAACATAGACTAGTAACATGTCTACCTCTATAG
TGGAAAGTAACATATGTGTGTTAACATGCAATACTTCATTTATTAGGCTATAGACACATCTTATCTTGATATGTGTAATG
TTACTCATAACTAGCTATGTTACCACTTTCCTCTCTTTCTTCATTTATTACTTGTCACATCATCTTTTTTATCTAGATAT
GTGTGATGTTACTACCTATGTTACTCCCACTGTGGGTAGTCGAAGTAGATACGTGACACTAAATTTTAAAAAAAATGGCA
TTTCACTAGACTGACAAAAATTGGCTGTCTGCTGAATAATGGCTTTATACTCTTTTTTTAGGTGAAC-------------
----------------AATGGCTTTATACTTTGTCTCCGCTGGATGGAGTAGCGAC-------TGAAGAGAGCCGGAGAC
GGCACTTTTGGGCTTTAACGGGCTAGTGGCTGTTGCGGGCTTGCAACGCCGGCCTTAAATACTGGGAACGCACTCGTTGT
CCAGCATGCATGCAAGCCAGGTCTCCATTCC---ATTCCATACCCATCCATCCGCATCCATCCTCGATCCAGCGCCCGCC
CCCTCACGACACCCGCACCCCTCCCTACTCCGAGCCTCGCTCGAACCATTCCACACGCGCACGCACACGTACAC------
-CAATCGCAATCGACTCGCGCGCCT----GCACGTTCGCTTCCCGCTCCACAAATCAAGAGCCAAGCACCACACTGGTTC
CCGGCCATCTCATTCC-ATTCATCCATCCATCGCGCGCCTCCAGCAGCCTGCCCGCCCGCCCGTATGTGCCTGCTGCTCT
CTGGTAGTACCAGCGGACCAACCAGCATGAGCAGGATCCACCCTTCCGATCGCGGCGACGGCGCCCGCCGCGCGGCGCGG
ACGGC------GGCGGAGCGGCAGCAGCAGCTGCCGGCGGTGTACACGGTGTGGAAGAGGTCCAGCATGGGGTTCCAGGG
CACCGACGGCTTCTCCGTCTACGACGCCGCCGGGAGGCTCGCCTTCCGCGTCGACAACTACGCCCGCCGCCCCAAGGCCT
TCGCCGGCGAGCTGCTGCTCATGGACGGCCGCGGCGCCCCTCTCCTCTCCCTCAGGCCGCAGGTAC--------------
--GCATCATCACAACAACTTCTTCGCACGTAGA---GCCATCAAACTTTGCGTCTGGCCGTTA---ACTCTTCTTA--CT
CTCTGCTCGTGACAGATCTTTAGCCTGCACGACCGATGGAACTGCTACAGAGTTGCACCGGGAGAAGAAAGCTGCCCGGA
CACGGACAGGAGCTCCTCCGCGCAGCAGCTCTTCTCCATGCTGAAGTGCGCCGCTCTGCAGAGCACGGACGACGCAGAGG
TCCACATGTCGTCGGCCTCGACGGCGACGACGTCAGGGCGCGGCTGCCGGGCTCCGCCCTCCCCTCCTCCCGGCTACCGC
GTGGAGGGCTGCTTCTCCAGGAGGAGCTGCAAGATCACCAGGAGCGACGGCCAGGAGGCGGCACGGATACTGAGGAAGAA
AGCCGGTGGACCTACGGCGTCGGCAGCGGCGCCGCCCAGGCCCGTCGCTCTCGGCGACGACGTGTTCAGCCTGGTCGTTC
GGCCGGGCGTGGACGCCGCCACGGTCATGGCTATTGTCGTTGTCATGGACCGGATCTGCCGGAAGCCCTACGCACCAATG
GCGTGCTCTTCACAGTAAC---CAATAGCTACTGTACTAGACGGTGCGCCCACGTCAGTCAAGAG-TT-TTCGTCCTTTC
GTTGGATGAATCGGAGAACTGCGGCGTTGCATGAACGCCGCCCCACTTCCTGAAGACATTGTGATGTCGAAGAGCTGTTC
TTTATCAGTTTTATTA--GTGTGATTTTTAGTCATTTGTACGGGTTGTAAAATAGCGGTAGCATTACCGTCATGCCTCAA
AGTGGCATTTGCTGTCATTTTGTAAGCTGATTTGAGCATCAAGTATCATGAAAATCGCTTCGATAAAATCTGGTCGAGTG
CG----------------------------T-------------------------------------------------
AAATATACTTACACGCACACTGTGACCTCAGGATGCCAATTCCATTTGCAGTGGAGTGGAGAAATTTAGTGGGATTAGTG
GATACCCAAAGCACTAATG---------GAGTAATGGTTGCCTTTGTCGTGCATCTGCCGAAGGAGGAGGAGACCCACGC
CACGTTCCAACCAACATGTTGGGGCAACCCAGCAGGCGAACAATGAATGGGCAAGCAACTGCGCCAAAGCGACGGCCCTA
GTTGTTGGCA------T------GCCAAGCCCTCCAGGACACACGACCACGACGGGGAGGAAATTACCTGGTGCAGGTTA
CCTAGTACGGAGGCAACGAATCCAACACTGACCACTCACCGCTTGGCAAAGACGCCAGCAGATGTGGCGAATTGCAATCC
AGAGCA----CAGGG----CAGAAATATTATTCTCCATCAGCACATCCTATCATGTCATGTGGCATCCAGCCAGGGGCAT
CCGGTGAGACAAAAGCTTTCTTTCCGCTGCCACAAGAACAAAGGTCCTCTTTGGCATACATACC----AGGCACACAGCG
TAAAAGATGAAAATGACCAAAG----------TCCACACCCAGAATATGCACAGGATGAAAGGGACAAAAGTTGCCCAGG
CTCCGCAAGCGAATTCAGCCGCTACCTGAGC
>chr5A_783
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-------------------------------------------------ATCCGCAGCCATTCTCGATCGAGCGCCCGCC
CCCTCACGACACCCGCACCCCTACT---------CCTCGCTCGATACATTCCACACGCGCGCGCACACGTACACGGTACA
CCAATCGCAATCGACTCGCGCGCGC----GCACGCTCGCTTCTCGCTCCACAAATCAAGAGCCAAGCACCACGCTGGTTC
CCGCCCATCTCATTCCCATTTGTCCATCCATCGCGCACCTCCAGCAGCCTGCCCGCCCGCCCGTATGTGCCTGCTGCTCT
CTGGCAGCACCAGCGGACCAGCCAGCATGAGCAGGATCCACCCTTCCGATCGCGGCGACGGCGCCCGCCGCGCGGCGCGG
ACGGCCGCGGCGGCGGAGCGGGAGCGGCAGCAGCCAGCTGTGTACACGGTGTGGAAGAGGTCCAGCATGGGGTTCCAGGG
CACCGACGGCTTCTCCGTCTACGACGCCGCCGGGAGGCTCGCCTTCCGCGTCGACAACTACGCCCGCCGCCCCAAGGCCT
TCGCCGGCGAGCTGCTGCTCATGGACGGCCGCGGCGCCCCTCTCCTCTCCCTCAGGCCGCAGGTACTCTACCGTGCATGC
ATGCATGATCACAGCAGCTTCTTCCCACGTAAACACGCCATCAAACTCTGCGTCCGGTCGTTACTAACTCTTCTTACTCT
CTCTGCTCGTGACAGATCTTCAGCCTGCACGACCGATGGAACTGCTACAGAGTTGCACCGGGAGAAGAAGGTTGCCCGGA
GACGGACAAGAGCTCCTCCGCGCAGCAGCTCTTCTCCATGCGGAAGTGCGCCGCTCTGCAGAGCACGGACGACGCAGAGG
TCCACATGTCAACGACCTCGGCGGCGACGACGTCAGGGCGCGGCTGCCGGGCTCCGCCGTCCCCTCCTTCCGGCTACCGC
GTGGAGGGCTGCTTCTCCAGGAGGAGCTGCAAGATCACCAGGAGCGACGGCCAGGAGGCGGCACGGATACTGAGGAAGAA
AGCCGGTGGACCTACGGCGGCGGCGGCGTCGTCGTCCAGGCCCGTCGCTCTCGGCGACGACGTGTTCAGCCTGGTCGTTC
GGCCGGGCGTGGACGCCGCCACGGTCATGGCTATTGTCGTTGTCATGGACCGGATCTGCCGGAAGCCCTACGCACCAATG
GCGTGCTCTGCACAGTAATAATCAATAGCTACTGTACTAGACGGTGCGCCCACGTCAGTCAAGAGTTT-TTCGTCCTTTG
GTTGGATGAATCGGAGAGGC--------GCATGAACGCCGCCCC-CTTCCTGAAGACATTGCGATGTCGAAGAGCTGTTC
TTTGTCTGTTTTATTAGTGTGTGGTTTTTGGTCATTTGTACGGGTTGTAAAAGA---GTAGCAGTACCGTCATGCCTCAA
AGTGGCGTTTGCTGTCATTTTGTAAGCTGACTTGAGCATCAAATATCTTGATAATCGCTTTGATAAAATCTGGTCGAGTG
CGTATAGAAAATCTTCAATTACATAAAAAAT-------------------------------------------------
AAATATACTGACACGCACACTGTGACCTCAGGAAGCCAATTCCATTTGCAGTGGAGTTGAGAAATTCAGTGGGATTAGTG
GATACCCAAAGCACTAAAACTAAGCCA----AAATGGTTGCCTTTGCCGTGCATCTGCCGAAGGAGGAG---ACCTACGC
CACGTTCCCAACATGTT----GGGCAACCCAGCAGGCGAACAATGAATGGCCAAGCAACTGCGCCAAAGCGACGGGCCTA
GTTGTTGGCA------TGCCATTGCCAAGCCCTCCAGGACACACGACCACGACGGGGAGGAAATTACCTGGTGCAGGTTA
CCTAGTACAGAGGCAACGAATCCAACGCTGAACACTCACCGCTTGGCAAAGGCACCAGCAGATGTGGCGAATTGCAATCC
AGAGCA----CGCACAAGACAGAAATATTCCGTTCCATCAGCACATCCTATCATGTCATGTGGCATCCAGCCAGGGGCAT
CCGGTGAGACAAAAGCCTTCTTTCCGCGGCCACAAGAACAAAGGTCCTCTTTGGCGTACATACCAGGCAGGCACACAGCG
TAAAAGATGAAAATGACCAAAG----------TCCACAGCCAGAATATGCACAGGATGAAAGGGACCAAAGTTGCCCAGG
CTCCGCAAGCGAATTCAGCCGTTACCTGAGC
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S------------------S-------------S--
S-----------S-S---SS-----S-SS-------S-S--------------S--------------SS------S---
----S-------S----------------S--S------------S--S-S-------S-----S-S-------------
-----S--------------S-----S--S-------------------SSSSSSS------------------------
---S--------------------------------S----------------S----S---S--SS-S-----S-----
-S--S---------------------------------------------------------------------------
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----------------------------------------S--------------S----SS-S-SS-SSS-S-------
--------------------S------------------------------S-----SSSS--SS-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----------------------S-----S-----------SSSSSSS-----------------
------------------------S---SS-----------------S-----------------S-SS-----------
-------------------------------SSS----------------------------------------------
----------------S----------------------S----------------------------------------
--S----------------------SSSS---------------S------------S------------------S---
--------------------------------S-----S-----------------------------------------
-S---------------S-------------------------S-----S------------------------------
---------------------------------S----------------------------------------------
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----------------------------------------------------------S---------------------
------------------------S--------------------------------------S-------S--------
--------------------------------------------------------------------S-----------
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----------------------------------------------------------S---------------------
--S-----------------------------------S-----------------------------------------
------------------------------------S-----------S-------------------------------
----------S--S-------------------------------------------------S----------------
----------------------------------------------S---------------------S-----------
----------------------------S---------------S-----------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------S-------------S---------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----------------------------------------------SS-------------------------------S
---------SS-SS-SSSSSSSS-SSSS----------------------------------------------------
-------------------------------S------------S-----------------------------------
----------SSSSSS----------------------------------------------------------------
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------SSSS----------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------------------SSSSSSSSSS---------------S-------------------------------S
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>forward_105
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-----TGACCCATTGCACATGCTCT-------------------------------------------------------
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>reverse_1659
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----------------------------------------------------------ACAGGTACCGTGCATGCATG--
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>forward_350
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----------CACCCGCTTTCACACGTAAC--------------------------------------------------
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>reverse_2596
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-----------------------------------CGATGCATAGGCGGGGAAAA-------------------------
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