Multiple sequence alignment - TraesCS5D01G147300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G147300 chr5D 100.000 3056 0 0 870 3925 233735836 233738891 0.000000e+00 5644.0
1 TraesCS5D01G147300 chr5D 100.000 623 0 0 1 623 233734967 233735589 0.000000e+00 1151.0
2 TraesCS5D01G147300 chr5D 95.318 299 13 1 256 553 493401654 493401952 1.280000e-129 473.0
3 TraesCS5D01G147300 chr5D 93.262 282 18 1 1 282 293400048 293399768 7.850000e-112 414.0
4 TraesCS5D01G147300 chr5B 91.103 1405 77 20 1727 3090 271145363 271143966 0.000000e+00 1858.0
5 TraesCS5D01G147300 chr5B 88.382 723 57 16 3200 3918 271143962 271143263 0.000000e+00 845.0
6 TraesCS5D01G147300 chr5B 93.878 392 10 4 870 1253 271146269 271145884 2.630000e-161 579.0
7 TraesCS5D01G147300 chr5B 88.942 208 14 5 1461 1667 271145575 271145376 8.420000e-62 248.0
8 TraesCS5D01G147300 chr5B 92.063 63 4 1 3073 3134 233969186 233969248 1.940000e-13 87.9
9 TraesCS5D01G147300 chr5B 89.706 68 3 4 3073 3138 109885821 109885886 2.510000e-12 84.2
10 TraesCS5D01G147300 chr5A 90.108 1203 70 25 1919 3090 321024276 321023092 0.000000e+00 1517.0
11 TraesCS5D01G147300 chr5A 91.667 552 42 4 2 552 428929890 428930438 0.000000e+00 761.0
12 TraesCS5D01G147300 chr5A 91.532 555 35 5 1 554 674110929 674110386 0.000000e+00 754.0
13 TraesCS5D01G147300 chr5A 89.918 486 38 4 3136 3620 321023094 321022619 2.000000e-172 616.0
14 TraesCS5D01G147300 chr5A 91.051 447 27 10 870 1315 321026266 321025832 3.380000e-165 592.0
15 TraesCS5D01G147300 chr5A 91.691 337 22 2 3587 3918 321022584 321022249 2.760000e-126 462.0
16 TraesCS5D01G147300 chr5A 91.827 208 14 2 1461 1667 321025662 321025457 1.780000e-73 287.0
17 TraesCS5D01G147300 chr5A 94.737 171 8 1 1758 1928 321025405 321025236 8.360000e-67 265.0
18 TraesCS5D01G147300 chr5A 91.071 112 5 2 1355 1464 321025831 321025723 3.160000e-31 147.0
19 TraesCS5D01G147300 chr2B 92.143 560 42 2 2 560 236687471 236686913 0.000000e+00 789.0
20 TraesCS5D01G147300 chr3A 91.697 554 43 3 2 554 699188944 699189495 0.000000e+00 765.0
21 TraesCS5D01G147300 chr7D 89.748 556 55 2 2 556 7570940 7570386 0.000000e+00 710.0
22 TraesCS5D01G147300 chr6A 89.130 552 54 6 2 552 146541466 146540920 0.000000e+00 682.0
23 TraesCS5D01G147300 chr6A 96.364 55 2 0 3080 3134 559261477 559261423 1.500000e-14 91.6
24 TraesCS5D01G147300 chr2A 86.738 558 69 3 1 554 36400693 36401249 2.000000e-172 616.0
25 TraesCS5D01G147300 chr1A 92.519 401 29 1 155 554 307472418 307472018 1.220000e-159 573.0
26 TraesCS5D01G147300 chr1A 94.915 59 0 3 3086 3141 415644658 415644600 5.400000e-14 89.8
27 TraesCS5D01G147300 chr2D 92.118 406 30 2 149 553 635758044 635757640 4.400000e-159 571.0
28 TraesCS5D01G147300 chr4B 94.898 98 5 0 1015 1112 147365947 147366044 1.890000e-33 154.0
29 TraesCS5D01G147300 chr4A 94.898 98 5 0 1015 1112 471933266 471933169 1.890000e-33 154.0
30 TraesCS5D01G147300 chr4A 92.537 67 1 3 3071 3134 642594587 642594522 4.180000e-15 93.5
31 TraesCS5D01G147300 chr7B 98.148 54 1 0 3082 3135 730035521 730035468 1.160000e-15 95.3
32 TraesCS5D01G147300 chr7B 96.429 56 1 1 3079 3134 489146909 489146855 1.500000e-14 91.6
33 TraesCS5D01G147300 chr6B 91.045 67 3 3 3072 3136 495435554 495435619 1.940000e-13 87.9
34 TraesCS5D01G147300 chr1D 89.706 68 3 3 3073 3138 393087763 393087828 2.510000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G147300 chr5D 233734967 233738891 3924 False 3397.500000 5644 100.000000 1 3925 2 chr5D.!!$F2 3924
1 TraesCS5D01G147300 chr5B 271143263 271146269 3006 True 882.500000 1858 90.576250 870 3918 4 chr5B.!!$R1 3048
2 TraesCS5D01G147300 chr5A 428929890 428930438 548 False 761.000000 761 91.667000 2 552 1 chr5A.!!$F1 550
3 TraesCS5D01G147300 chr5A 674110386 674110929 543 True 754.000000 754 91.532000 1 554 1 chr5A.!!$R1 553
4 TraesCS5D01G147300 chr5A 321022249 321026266 4017 True 555.142857 1517 91.486143 870 3918 7 chr5A.!!$R2 3048
5 TraesCS5D01G147300 chr2B 236686913 236687471 558 True 789.000000 789 92.143000 2 560 1 chr2B.!!$R1 558
6 TraesCS5D01G147300 chr3A 699188944 699189495 551 False 765.000000 765 91.697000 2 554 1 chr3A.!!$F1 552
7 TraesCS5D01G147300 chr7D 7570386 7570940 554 True 710.000000 710 89.748000 2 556 1 chr7D.!!$R1 554
8 TraesCS5D01G147300 chr6A 146540920 146541466 546 True 682.000000 682 89.130000 2 552 1 chr6A.!!$R1 550
9 TraesCS5D01G147300 chr2A 36400693 36401249 556 False 616.000000 616 86.738000 1 554 1 chr2A.!!$F1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 622 0.108396 TGAACTGTTGCCTGCTGCTA 59.892 50.0 0.0 0.0 42.0 3.49 F
1144 1149 0.263172 TTGCCCCAACTTTCCCTTGA 59.737 50.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1835 1.202758 ACAATGTCGAAAGGGAGTGCA 60.203 47.619 0.00 0.00 0.00 4.57 R
3031 4229 0.459237 CTCGACATGACCAGGTCAGC 60.459 60.000 26.56 16.88 46.04 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 27 0.678684 TCGTCATCCAGTACGAGGCA 60.679 55.000 0.00 0.00 42.74 4.75
105 109 0.635009 AGGGGAGTATCGACCAGGAA 59.365 55.000 0.00 0.00 35.54 3.36
116 120 1.202770 CGACCAGGAACAAGGGAAAGT 60.203 52.381 0.00 0.00 0.00 2.66
153 157 2.881734 TGCCGAGATCATCTAGGACAT 58.118 47.619 17.61 0.00 41.15 3.06
194 198 1.633432 TGGTCATCTCCGGGAATGTTT 59.367 47.619 0.00 0.00 0.00 2.83
305 310 8.017946 CAGACTGCAAATGATTGATATCAGATG 58.982 37.037 5.39 2.13 43.70 2.90
352 357 5.160607 ACCTGTCGGTGATCAAAGAAATA 57.839 39.130 0.00 0.00 43.51 1.40
484 489 1.153168 CCTGTGGCTGTTATCCCCG 60.153 63.158 0.00 0.00 0.00 5.73
545 550 5.319043 TCAATAAAGTGTCTGGTTTCCCT 57.681 39.130 0.00 0.00 0.00 4.20
546 551 6.442541 TCAATAAAGTGTCTGGTTTCCCTA 57.557 37.500 0.00 0.00 0.00 3.53
574 579 4.505324 AAAAGCTATCACCTTCCCCTAC 57.495 45.455 0.00 0.00 0.00 3.18
575 580 3.423058 AAGCTATCACCTTCCCCTACT 57.577 47.619 0.00 0.00 0.00 2.57
576 581 2.965562 AGCTATCACCTTCCCCTACTC 58.034 52.381 0.00 0.00 0.00 2.59
577 582 2.520549 AGCTATCACCTTCCCCTACTCT 59.479 50.000 0.00 0.00 0.00 3.24
578 583 2.630580 GCTATCACCTTCCCCTACTCTG 59.369 54.545 0.00 0.00 0.00 3.35
579 584 1.501582 ATCACCTTCCCCTACTCTGC 58.498 55.000 0.00 0.00 0.00 4.26
580 585 0.413832 TCACCTTCCCCTACTCTGCT 59.586 55.000 0.00 0.00 0.00 4.24
581 586 0.827368 CACCTTCCCCTACTCTGCTC 59.173 60.000 0.00 0.00 0.00 4.26
582 587 0.713579 ACCTTCCCCTACTCTGCTCT 59.286 55.000 0.00 0.00 0.00 4.09
583 588 1.079658 ACCTTCCCCTACTCTGCTCTT 59.920 52.381 0.00 0.00 0.00 2.85
584 589 1.760029 CCTTCCCCTACTCTGCTCTTC 59.240 57.143 0.00 0.00 0.00 2.87
585 590 2.625617 CCTTCCCCTACTCTGCTCTTCT 60.626 54.545 0.00 0.00 0.00 2.85
586 591 2.445682 TCCCCTACTCTGCTCTTCTC 57.554 55.000 0.00 0.00 0.00 2.87
587 592 1.063567 TCCCCTACTCTGCTCTTCTCC 60.064 57.143 0.00 0.00 0.00 3.71
588 593 1.028905 CCCTACTCTGCTCTTCTCCG 58.971 60.000 0.00 0.00 0.00 4.63
589 594 1.408961 CCCTACTCTGCTCTTCTCCGA 60.409 57.143 0.00 0.00 0.00 4.55
590 595 1.673920 CCTACTCTGCTCTTCTCCGAC 59.326 57.143 0.00 0.00 0.00 4.79
591 596 2.639065 CTACTCTGCTCTTCTCCGACT 58.361 52.381 0.00 0.00 0.00 4.18
592 597 1.459450 ACTCTGCTCTTCTCCGACTC 58.541 55.000 0.00 0.00 0.00 3.36
593 598 0.376852 CTCTGCTCTTCTCCGACTCG 59.623 60.000 0.00 0.00 0.00 4.18
603 608 2.651361 CCGACTCGGTGCTGAACT 59.349 61.111 9.51 0.00 42.73 3.01
604 609 1.734477 CCGACTCGGTGCTGAACTG 60.734 63.158 9.51 0.00 42.73 3.16
605 610 1.007271 CGACTCGGTGCTGAACTGT 60.007 57.895 0.00 0.00 36.45 3.55
606 611 0.597637 CGACTCGGTGCTGAACTGTT 60.598 55.000 0.00 0.00 36.45 3.16
607 612 0.861837 GACTCGGTGCTGAACTGTTG 59.138 55.000 0.00 0.00 36.45 3.33
608 613 1.160329 ACTCGGTGCTGAACTGTTGC 61.160 55.000 0.00 0.00 36.45 4.17
609 614 1.845809 CTCGGTGCTGAACTGTTGCC 61.846 60.000 0.00 0.00 36.45 4.52
610 615 1.893808 CGGTGCTGAACTGTTGCCT 60.894 57.895 0.00 0.00 0.00 4.75
611 616 1.656441 GGTGCTGAACTGTTGCCTG 59.344 57.895 0.00 0.00 0.00 4.85
612 617 1.008079 GTGCTGAACTGTTGCCTGC 60.008 57.895 0.00 1.02 0.00 4.85
613 618 1.152902 TGCTGAACTGTTGCCTGCT 60.153 52.632 0.00 0.00 0.00 4.24
614 619 1.285023 GCTGAACTGTTGCCTGCTG 59.715 57.895 0.00 0.00 0.00 4.41
615 620 1.285023 CTGAACTGTTGCCTGCTGC 59.715 57.895 0.00 0.00 41.77 5.25
616 621 1.152902 TGAACTGTTGCCTGCTGCT 60.153 52.632 0.00 0.00 42.00 4.24
617 622 0.108396 TGAACTGTTGCCTGCTGCTA 59.892 50.000 0.00 0.00 42.00 3.49
618 623 1.271543 TGAACTGTTGCCTGCTGCTAT 60.272 47.619 0.00 0.00 42.00 2.97
619 624 1.399791 GAACTGTTGCCTGCTGCTATC 59.600 52.381 0.00 0.00 42.00 2.08
620 625 0.393537 ACTGTTGCCTGCTGCTATCC 60.394 55.000 0.00 0.00 42.00 2.59
621 626 1.077501 TGTTGCCTGCTGCTATCCC 60.078 57.895 0.00 0.00 42.00 3.85
622 627 1.225704 GTTGCCTGCTGCTATCCCT 59.774 57.895 0.00 0.00 42.00 4.20
991 996 2.892425 CCTTGTCATCTCCGCCGC 60.892 66.667 0.00 0.00 0.00 6.53
1144 1149 0.263172 TTGCCCCAACTTTCCCTTGA 59.737 50.000 0.00 0.00 0.00 3.02
1253 1274 3.607163 CCAATGCGGCTGATGGTT 58.393 55.556 0.00 0.00 0.00 3.67
1254 1275 1.892338 CCAATGCGGCTGATGGTTT 59.108 52.632 0.00 0.00 0.00 3.27
1323 1418 8.624701 TTCGTTATAATTTTGTACTCTCTCCG 57.375 34.615 0.00 0.00 0.00 4.63
1324 1419 7.765307 TCGTTATAATTTTGTACTCTCTCCGT 58.235 34.615 0.00 0.00 0.00 4.69
1325 1420 7.912250 TCGTTATAATTTTGTACTCTCTCCGTC 59.088 37.037 0.00 0.00 0.00 4.79
1326 1421 7.167136 CGTTATAATTTTGTACTCTCTCCGTCC 59.833 40.741 0.00 0.00 0.00 4.79
1327 1422 6.793505 ATAATTTTGTACTCTCTCCGTCCT 57.206 37.500 0.00 0.00 0.00 3.85
1328 1423 7.893124 ATAATTTTGTACTCTCTCCGTCCTA 57.107 36.000 0.00 0.00 0.00 2.94
1329 1424 6.600882 AATTTTGTACTCTCTCCGTCCTAA 57.399 37.500 0.00 0.00 0.00 2.69
1330 1425 6.600882 ATTTTGTACTCTCTCCGTCCTAAA 57.399 37.500 0.00 0.00 0.00 1.85
1331 1426 6.600882 TTTTGTACTCTCTCCGTCCTAAAT 57.399 37.500 0.00 0.00 0.00 1.40
1332 1427 6.600882 TTTGTACTCTCTCCGTCCTAAATT 57.399 37.500 0.00 0.00 0.00 1.82
1333 1428 6.600882 TTGTACTCTCTCCGTCCTAAATTT 57.399 37.500 0.00 0.00 0.00 1.82
1334 1429 7.707624 TTGTACTCTCTCCGTCCTAAATTTA 57.292 36.000 0.00 0.00 0.00 1.40
1335 1430 7.707624 TGTACTCTCTCCGTCCTAAATTTAA 57.292 36.000 0.00 0.00 0.00 1.52
1336 1431 7.769220 TGTACTCTCTCCGTCCTAAATTTAAG 58.231 38.462 0.00 0.00 0.00 1.85
1337 1432 7.613022 TGTACTCTCTCCGTCCTAAATTTAAGA 59.387 37.037 0.00 0.00 0.00 2.10
1338 1433 7.102847 ACTCTCTCCGTCCTAAATTTAAGAG 57.897 40.000 12.97 12.97 34.22 2.85
1339 1434 5.903810 TCTCTCCGTCCTAAATTTAAGAGC 58.096 41.667 13.85 3.37 31.30 4.09
1340 1435 4.679662 TCTCCGTCCTAAATTTAAGAGCG 58.320 43.478 0.00 5.81 0.00 5.03
1341 1436 4.159135 TCTCCGTCCTAAATTTAAGAGCGT 59.841 41.667 0.00 0.00 0.00 5.07
1342 1437 4.824289 TCCGTCCTAAATTTAAGAGCGTT 58.176 39.130 0.00 0.00 0.00 4.84
1343 1438 5.240121 TCCGTCCTAAATTTAAGAGCGTTT 58.760 37.500 0.00 0.00 0.00 3.60
1344 1439 5.702209 TCCGTCCTAAATTTAAGAGCGTTTT 59.298 36.000 0.00 0.00 0.00 2.43
1345 1440 6.205270 TCCGTCCTAAATTTAAGAGCGTTTTT 59.795 34.615 0.00 0.00 0.00 1.94
1346 1441 6.304683 CCGTCCTAAATTTAAGAGCGTTTTTG 59.695 38.462 0.00 0.00 0.00 2.44
1347 1442 7.073265 CGTCCTAAATTTAAGAGCGTTTTTGA 58.927 34.615 0.00 0.00 0.00 2.69
1348 1443 7.059147 CGTCCTAAATTTAAGAGCGTTTTTGAC 59.941 37.037 0.00 0.00 0.00 3.18
1349 1444 7.858879 GTCCTAAATTTAAGAGCGTTTTTGACA 59.141 33.333 0.00 0.00 0.00 3.58
1350 1445 7.858879 TCCTAAATTTAAGAGCGTTTTTGACAC 59.141 33.333 0.00 0.00 0.00 3.67
1351 1446 7.860872 CCTAAATTTAAGAGCGTTTTTGACACT 59.139 33.333 0.00 0.00 0.00 3.55
1352 1447 9.872757 CTAAATTTAAGAGCGTTTTTGACACTA 57.127 29.630 0.00 0.00 0.00 2.74
1353 1448 8.782533 AAATTTAAGAGCGTTTTTGACACTAG 57.217 30.769 0.00 0.00 0.00 2.57
1360 1455 7.600065 AGAGCGTTTTTGACACTAGATACTTA 58.400 34.615 0.00 0.00 0.00 2.24
1390 1485 5.005203 GTGAATAATCGCAAGTCTGACTCAG 59.995 44.000 11.31 8.20 36.07 3.35
1398 1493 4.205996 CGCAAGTCTGACTCAGAATTATCG 59.794 45.833 18.79 19.14 45.05 2.92
1404 1499 6.706716 AGTCTGACTCAGAATTATCGACGATA 59.293 38.462 13.47 13.47 42.46 2.92
1405 1500 7.012943 GTCTGACTCAGAATTATCGACGATAG 58.987 42.308 16.53 8.53 42.46 2.08
1480 1642 9.119418 TGTATGTATTAACATGTCCCAATCTTG 57.881 33.333 0.00 0.00 45.99 3.02
1482 1644 6.186957 TGTATTAACATGTCCCAATCTTGCT 58.813 36.000 0.00 0.00 0.00 3.91
1524 1686 1.373497 GGCATACTCATCGCCGAGG 60.373 63.158 0.00 0.00 37.34 4.63
1536 1698 2.950433 TCGCCGAGGTTTACAGTTAAG 58.050 47.619 0.00 0.00 0.00 1.85
1595 1758 6.413818 CGGACTGTTCATAAACTTTGTTTCAC 59.586 38.462 0.00 0.00 36.30 3.18
1596 1759 7.480810 GGACTGTTCATAAACTTTGTTTCACT 58.519 34.615 0.00 0.00 36.30 3.41
1597 1760 7.973944 GGACTGTTCATAAACTTTGTTTCACTT 59.026 33.333 0.00 0.00 36.30 3.16
1598 1761 8.687824 ACTGTTCATAAACTTTGTTTCACTTG 57.312 30.769 0.00 0.00 36.30 3.16
1625 1790 2.677914 TCTGAAGAGTGTCCAAGGTGA 58.322 47.619 0.00 0.00 0.00 4.02
1649 1814 6.360370 AGACACATACAGTAGGAAACACAT 57.640 37.500 0.00 0.00 0.00 3.21
1678 1843 7.550712 AGAATCAAAAGAATTATTGCACTCCC 58.449 34.615 0.00 0.00 0.00 4.30
1679 1844 7.398332 AGAATCAAAAGAATTATTGCACTCCCT 59.602 33.333 0.00 0.00 0.00 4.20
1680 1845 6.916360 TCAAAAGAATTATTGCACTCCCTT 57.084 33.333 0.00 0.00 0.00 3.95
1681 1846 7.301868 TCAAAAGAATTATTGCACTCCCTTT 57.698 32.000 0.00 0.00 0.00 3.11
1682 1847 7.378181 TCAAAAGAATTATTGCACTCCCTTTC 58.622 34.615 0.00 0.00 0.00 2.62
1683 1848 5.567138 AAGAATTATTGCACTCCCTTTCG 57.433 39.130 0.00 0.00 0.00 3.46
1684 1849 4.843728 AGAATTATTGCACTCCCTTTCGA 58.156 39.130 0.00 0.00 0.00 3.71
1685 1850 4.636206 AGAATTATTGCACTCCCTTTCGAC 59.364 41.667 0.00 0.00 0.00 4.20
1686 1851 3.410631 TTATTGCACTCCCTTTCGACA 57.589 42.857 0.00 0.00 0.00 4.35
1687 1852 2.496899 ATTGCACTCCCTTTCGACAT 57.503 45.000 0.00 0.00 0.00 3.06
1688 1853 2.270352 TTGCACTCCCTTTCGACATT 57.730 45.000 0.00 0.00 0.00 2.71
1689 1854 1.522668 TGCACTCCCTTTCGACATTG 58.477 50.000 0.00 0.00 0.00 2.82
1690 1855 1.202758 TGCACTCCCTTTCGACATTGT 60.203 47.619 0.00 0.00 0.00 2.71
1691 1856 2.037902 TGCACTCCCTTTCGACATTGTA 59.962 45.455 0.00 0.00 0.00 2.41
1692 1857 3.270877 GCACTCCCTTTCGACATTGTAT 58.729 45.455 0.00 0.00 0.00 2.29
1693 1858 4.081365 TGCACTCCCTTTCGACATTGTATA 60.081 41.667 0.00 0.00 0.00 1.47
1694 1859 4.508124 GCACTCCCTTTCGACATTGTATAG 59.492 45.833 0.00 0.00 0.00 1.31
1695 1860 5.681437 GCACTCCCTTTCGACATTGTATAGA 60.681 44.000 0.00 0.00 0.00 1.98
1696 1861 5.980116 CACTCCCTTTCGACATTGTATAGAG 59.020 44.000 0.00 0.00 0.00 2.43
1697 1862 5.069251 ACTCCCTTTCGACATTGTATAGAGG 59.931 44.000 0.00 0.00 0.00 3.69
1698 1863 4.058817 CCCTTTCGACATTGTATAGAGGC 58.941 47.826 0.00 0.00 0.00 4.70
1699 1864 4.202264 CCCTTTCGACATTGTATAGAGGCT 60.202 45.833 0.00 0.00 0.00 4.58
1700 1865 4.747108 CCTTTCGACATTGTATAGAGGCTG 59.253 45.833 0.00 0.00 0.00 4.85
1701 1866 4.322080 TTCGACATTGTATAGAGGCTGG 57.678 45.455 0.00 0.00 0.00 4.85
1702 1867 2.628178 TCGACATTGTATAGAGGCTGGG 59.372 50.000 0.00 0.00 0.00 4.45
1703 1868 2.365617 CGACATTGTATAGAGGCTGGGT 59.634 50.000 0.00 0.00 0.00 4.51
1704 1869 3.553096 CGACATTGTATAGAGGCTGGGTC 60.553 52.174 0.00 0.00 0.00 4.46
1705 1870 3.384168 ACATTGTATAGAGGCTGGGTCA 58.616 45.455 0.00 0.00 0.00 4.02
1706 1871 3.780294 ACATTGTATAGAGGCTGGGTCAA 59.220 43.478 0.00 0.00 0.00 3.18
1707 1872 3.906720 TTGTATAGAGGCTGGGTCAAC 57.093 47.619 0.00 0.00 0.00 3.18
1708 1873 3.116096 TGTATAGAGGCTGGGTCAACT 57.884 47.619 0.00 0.00 0.00 3.16
1709 1874 4.259933 TGTATAGAGGCTGGGTCAACTA 57.740 45.455 0.00 0.00 0.00 2.24
1710 1875 4.616553 TGTATAGAGGCTGGGTCAACTAA 58.383 43.478 0.00 0.00 0.00 2.24
1711 1876 5.216622 TGTATAGAGGCTGGGTCAACTAAT 58.783 41.667 0.00 0.00 0.00 1.73
1712 1877 5.665812 TGTATAGAGGCTGGGTCAACTAATT 59.334 40.000 0.00 0.00 0.00 1.40
1713 1878 5.717119 ATAGAGGCTGGGTCAACTAATTT 57.283 39.130 0.00 0.00 0.00 1.82
1714 1879 3.690460 AGAGGCTGGGTCAACTAATTTG 58.310 45.455 0.00 0.00 36.42 2.32
1715 1880 2.755103 GAGGCTGGGTCAACTAATTTGG 59.245 50.000 0.00 0.00 35.69 3.28
1716 1881 2.378547 AGGCTGGGTCAACTAATTTGGA 59.621 45.455 0.00 0.00 35.69 3.53
1717 1882 3.011708 AGGCTGGGTCAACTAATTTGGAT 59.988 43.478 0.00 0.00 35.69 3.41
1718 1883 3.769300 GGCTGGGTCAACTAATTTGGATT 59.231 43.478 0.00 0.00 35.69 3.01
1719 1884 4.381932 GGCTGGGTCAACTAATTTGGATTG 60.382 45.833 0.00 0.00 35.69 2.67
1720 1885 4.381932 GCTGGGTCAACTAATTTGGATTGG 60.382 45.833 0.00 0.00 35.69 3.16
1721 1886 5.004361 TGGGTCAACTAATTTGGATTGGA 57.996 39.130 0.00 0.00 35.69 3.53
1722 1887 5.016173 TGGGTCAACTAATTTGGATTGGAG 58.984 41.667 0.00 0.00 35.69 3.86
1723 1888 4.402474 GGGTCAACTAATTTGGATTGGAGG 59.598 45.833 0.00 0.00 35.69 4.30
1724 1889 4.402474 GGTCAACTAATTTGGATTGGAGGG 59.598 45.833 0.00 0.00 35.69 4.30
1725 1890 5.261216 GTCAACTAATTTGGATTGGAGGGA 58.739 41.667 0.00 0.00 35.69 4.20
1787 1960 6.741109 TGCATGGCTAATGTAAATCTGAATG 58.259 36.000 0.00 0.00 38.65 2.67
1802 1975 4.005650 TCTGAATGTCAAGGATGTCAAGC 58.994 43.478 0.00 0.00 0.00 4.01
1996 3142 2.963101 AGTTCACCCAAAAGCTTAACCC 59.037 45.455 0.00 0.00 0.00 4.11
1999 3145 2.090999 TCACCCAAAAGCTTAACCCCTT 60.091 45.455 0.00 0.00 0.00 3.95
2090 3246 7.275920 ACTTAACTTGAGGTAGCTATCCATTG 58.724 38.462 0.00 0.00 0.00 2.82
2093 3249 5.431765 ACTTGAGGTAGCTATCCATTGTTG 58.568 41.667 0.00 0.00 0.00 3.33
2156 3319 8.118893 TCAAACTGTAAAACGTCTACTTACAC 57.881 34.615 8.68 0.00 33.25 2.90
2162 3325 8.732413 TGTAAAACGTCTACTTACACTGTATG 57.268 34.615 8.68 1.44 32.11 2.39
2163 3326 8.352201 TGTAAAACGTCTACTTACACTGTATGT 58.648 33.333 11.37 11.37 46.06 2.29
2164 3327 7.864307 AAAACGTCTACTTACACTGTATGTC 57.136 36.000 10.25 0.00 42.09 3.06
2250 3427 3.854666 TCTAAGCACTGATGAGACAAGC 58.145 45.455 0.00 0.00 0.00 4.01
2262 3439 3.270027 TGAGACAAGCGATTTATGGGTG 58.730 45.455 0.00 0.00 0.00 4.61
2325 3502 2.813754 AGCTTCTTCGCTTACATTTGCA 59.186 40.909 0.00 0.00 36.74 4.08
2342 3519 3.490439 TGCAATTCAGGTCAACTCTCA 57.510 42.857 0.00 0.00 0.00 3.27
2348 3525 3.857549 TCAGGTCAACTCTCATTCTCG 57.142 47.619 0.00 0.00 0.00 4.04
2442 3620 1.668826 TGGATTCTGCTACTGGGGTT 58.331 50.000 0.00 0.00 0.00 4.11
2444 3622 1.134068 GGATTCTGCTACTGGGGTTCC 60.134 57.143 0.00 0.00 0.00 3.62
2484 3662 9.046296 CAGGCTAATCACCTAAATTACACTTAG 57.954 37.037 0.00 0.00 35.10 2.18
2486 3664 9.609346 GGCTAATCACCTAAATTACACTTAGAA 57.391 33.333 0.00 0.00 0.00 2.10
2529 3707 6.317893 GTCTGTTCTTTGGACTTTTACTCCAA 59.682 38.462 0.00 0.00 44.53 3.53
2557 3735 5.010922 TGCTGCTGATTTGATTACCTTGTTT 59.989 36.000 0.00 0.00 0.00 2.83
2558 3736 5.346822 GCTGCTGATTTGATTACCTTGTTTG 59.653 40.000 0.00 0.00 0.00 2.93
2658 3839 1.526575 CTGGCCAAACAGTTCCGCAT 61.527 55.000 7.01 0.00 33.81 4.73
2744 3925 1.332686 GGTTCGTTGACCACCTGTTTC 59.667 52.381 1.47 0.00 39.57 2.78
2746 3927 0.176219 TCGTTGACCACCTGTTTCGT 59.824 50.000 0.00 0.00 0.00 3.85
2758 3939 5.997746 CCACCTGTTTCGTCATCCATATAAT 59.002 40.000 0.00 0.00 0.00 1.28
2840 4024 9.161629 GTGAAAGAAAAGGAATTGAAGGAAAAA 57.838 29.630 0.00 0.00 0.00 1.94
3005 4201 4.847633 TGTTCTGCATTGTTTTTCGAGAG 58.152 39.130 0.00 0.00 0.00 3.20
3006 4202 4.335315 TGTTCTGCATTGTTTTTCGAGAGT 59.665 37.500 0.00 0.00 0.00 3.24
3042 4240 4.759516 TTTATTTTTCGCTGACCTGGTC 57.240 40.909 19.96 19.96 0.00 4.02
3052 4250 2.092323 CTGACCTGGTCATGTCGAGTA 58.908 52.381 28.45 3.85 41.94 2.59
3073 4271 6.427441 AGTATCAACTGATGAGTCTGAGGTA 58.573 40.000 2.36 0.00 42.53 3.08
3090 4288 6.604795 TCTGAGGTAGTGGGTTACTTATGTAC 59.395 42.308 0.00 0.00 40.89 2.90
3092 4290 6.604795 TGAGGTAGTGGGTTACTTATGTACTC 59.395 42.308 0.00 0.00 40.89 2.59
3093 4291 5.896106 AGGTAGTGGGTTACTTATGTACTCC 59.104 44.000 0.00 0.00 40.89 3.85
3094 4292 5.069648 GGTAGTGGGTTACTTATGTACTCCC 59.930 48.000 15.53 15.53 40.89 4.30
3096 4294 4.961099 AGTGGGTTACTTATGTACTCCCTC 59.039 45.833 19.69 17.39 40.54 4.30
3097 4295 4.100653 GTGGGTTACTTATGTACTCCCTCC 59.899 50.000 19.69 11.95 40.54 4.30
3098 4296 3.320256 GGGTTACTTATGTACTCCCTCCG 59.680 52.174 15.29 0.00 38.69 4.63
3099 4297 3.956848 GGTTACTTATGTACTCCCTCCGT 59.043 47.826 0.00 0.00 0.00 4.69
3100 4298 4.037327 GGTTACTTATGTACTCCCTCCGTC 59.963 50.000 0.00 0.00 0.00 4.79
3101 4299 2.664015 ACTTATGTACTCCCTCCGTCC 58.336 52.381 0.00 0.00 0.00 4.79
3102 4300 1.607628 CTTATGTACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
3103 4301 0.839277 TATGTACTCCCTCCGTCCGA 59.161 55.000 0.00 0.00 0.00 4.55
3104 4302 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
3105 4303 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
3106 4304 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3107 4305 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3108 4306 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3109 4307 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3110 4308 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3111 4309 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3112 4310 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3113 4311 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3114 4312 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3115 4313 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3116 4314 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3117 4315 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3118 4316 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3119 4317 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3120 4318 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3121 4319 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3122 4320 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3123 4321 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3124 4322 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3125 4323 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3126 4324 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
3127 4325 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
3128 4326 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
3129 4327 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
3130 4328 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
3131 4329 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
3132 4330 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
3133 4331 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
3134 4332 6.477053 TGTCATCAAAATGGACAAAAAGGA 57.523 33.333 0.00 0.00 33.42 3.36
3135 4333 6.514947 TGTCATCAAAATGGACAAAAAGGAG 58.485 36.000 0.00 0.00 33.42 3.69
3136 4334 6.098124 TGTCATCAAAATGGACAAAAAGGAGT 59.902 34.615 0.00 0.00 33.42 3.85
3137 4335 7.286546 TGTCATCAAAATGGACAAAAAGGAGTA 59.713 33.333 0.00 0.00 33.42 2.59
3138 4336 7.809806 GTCATCAAAATGGACAAAAAGGAGTAG 59.190 37.037 0.00 0.00 33.42 2.57
3139 4337 7.505585 TCATCAAAATGGACAAAAAGGAGTAGT 59.494 33.333 0.00 0.00 33.42 2.73
3140 4338 8.792633 CATCAAAATGGACAAAAAGGAGTAGTA 58.207 33.333 0.00 0.00 0.00 1.82
3141 4339 8.161699 TCAAAATGGACAAAAAGGAGTAGTAC 57.838 34.615 0.00 0.00 0.00 2.73
3142 4340 6.796705 AAATGGACAAAAAGGAGTAGTACG 57.203 37.500 0.00 0.00 0.00 3.67
3143 4341 3.656559 TGGACAAAAAGGAGTAGTACGC 58.343 45.455 0.00 0.00 0.00 4.42
3144 4342 3.069872 TGGACAAAAAGGAGTAGTACGCA 59.930 43.478 6.37 0.00 0.00 5.24
3147 4345 5.870978 GGACAAAAAGGAGTAGTACGCAATA 59.129 40.000 6.37 0.00 0.00 1.90
3163 4361 2.225491 GCAATAACAGTTGTTCCTCGCA 59.775 45.455 0.00 0.00 39.31 5.10
3165 4363 4.615912 GCAATAACAGTTGTTCCTCGCAAT 60.616 41.667 0.00 0.00 39.31 3.56
3168 4366 6.811253 ATAACAGTTGTTCCTCGCAATTTA 57.189 33.333 0.00 0.00 39.31 1.40
3173 4371 1.748493 TGTTCCTCGCAATTTATGGCC 59.252 47.619 0.00 0.00 0.00 5.36
3185 4383 6.753279 CGCAATTTATGGCCTTATGGATATTG 59.247 38.462 3.32 8.44 34.57 1.90
3189 4387 7.959658 TTTATGGCCTTATGGATATTGATGG 57.040 36.000 3.32 0.00 34.57 3.51
3190 4388 3.700538 TGGCCTTATGGATATTGATGGC 58.299 45.455 3.32 0.00 38.49 4.40
3207 4405 8.773033 ATTGATGGCTTTAGGTTTATTGATCT 57.227 30.769 0.00 0.00 0.00 2.75
3225 4423 7.410800 TTGATCTCAAACATGCATGAAAAAC 57.589 32.000 32.75 14.93 32.11 2.43
3226 4424 6.514063 TGATCTCAAACATGCATGAAAAACA 58.486 32.000 32.75 17.00 0.00 2.83
3227 4425 6.421501 TGATCTCAAACATGCATGAAAAACAC 59.578 34.615 32.75 16.22 0.00 3.32
3228 4426 5.658468 TCTCAAACATGCATGAAAAACACA 58.342 33.333 32.75 6.77 0.00 3.72
3229 4427 5.749588 TCTCAAACATGCATGAAAAACACAG 59.250 36.000 32.75 15.38 0.00 3.66
3231 4429 2.758009 ACATGCATGAAAAACACAGGC 58.242 42.857 32.75 0.00 43.75 4.85
3232 4430 1.722464 CATGCATGAAAAACACAGGCG 59.278 47.619 22.59 0.00 45.88 5.52
3233 4431 0.743688 TGCATGAAAAACACAGGCGT 59.256 45.000 0.00 0.00 45.88 5.68
3234 4432 1.268999 TGCATGAAAAACACAGGCGTC 60.269 47.619 0.00 0.00 45.88 5.19
3235 4433 1.930371 GCATGAAAAACACAGGCGTCC 60.930 52.381 0.00 0.00 35.53 4.79
3236 4434 0.591170 ATGAAAAACACAGGCGTCCG 59.409 50.000 0.00 0.00 0.00 4.79
3237 4435 0.462225 TGAAAAACACAGGCGTCCGA 60.462 50.000 0.00 0.00 0.00 4.55
3238 4436 0.234884 GAAAAACACAGGCGTCCGAG 59.765 55.000 0.00 0.00 0.00 4.63
3239 4437 1.164041 AAAAACACAGGCGTCCGAGG 61.164 55.000 0.00 0.00 0.00 4.63
3240 4438 4.681978 AACACAGGCGTCCGAGGC 62.682 66.667 4.43 4.43 0.00 4.70
3263 4461 1.176527 GAGCCTTACAATGCCTGCAA 58.823 50.000 0.00 0.00 0.00 4.08
3285 4483 6.037062 GCAATGTTTCTTAGTTTGCAAGGTTT 59.963 34.615 0.00 0.00 41.67 3.27
3352 4550 2.417933 GCACAAGACAGTGGCTAGATTG 59.582 50.000 0.00 0.00 39.87 2.67
3395 4593 3.737559 TTAGACATTCCATTGCAGGGT 57.262 42.857 6.40 0.00 0.00 4.34
3445 4644 5.917541 TTAGCTGTTTTACTTCTCAACCG 57.082 39.130 0.00 0.00 0.00 4.44
3465 4664 8.756864 TCAACCGAAAAGCATTATTTGTTTTAC 58.243 29.630 0.00 0.00 37.73 2.01
3466 4665 8.543774 CAACCGAAAAGCATTATTTGTTTTACA 58.456 29.630 0.00 0.00 37.73 2.41
3486 4685 8.700722 TTTACATTTGTGATTATGCCATGAAC 57.299 30.769 0.00 0.00 0.00 3.18
3490 4689 6.934048 TTTGTGATTATGCCATGAACGATA 57.066 33.333 0.00 0.00 0.00 2.92
3604 4871 3.201708 AGGCCTCTTGCAGATTGTTCTAT 59.798 43.478 0.00 0.00 43.89 1.98
3613 4880 8.097038 TCTTGCAGATTGTTCTATGGATATACC 58.903 37.037 0.00 0.00 39.54 2.73
3661 4928 8.556194 GCATCACGAATTAATATCAACCAACTA 58.444 33.333 0.00 0.00 0.00 2.24
3703 4970 2.093306 TACACCTTGGCTCGACATTG 57.907 50.000 0.00 0.00 0.00 2.82
3711 4978 0.108138 GGCTCGACATTGCCTGTACT 60.108 55.000 6.18 0.00 45.26 2.73
3715 4982 3.491267 GCTCGACATTGCCTGTACTATTC 59.509 47.826 0.00 0.00 38.54 1.75
3724 4991 4.430007 TGCCTGTACTATTCAAGTTAGCG 58.570 43.478 0.00 0.00 39.80 4.26
3729 4996 6.255887 CCTGTACTATTCAAGTTAGCGAAAGG 59.744 42.308 0.00 0.00 39.80 3.11
3853 5127 4.509230 AGATGTTACAGCTGATACATTGCG 59.491 41.667 27.02 0.33 31.76 4.85
3893 5167 9.561069 ACTGAATTTGTAATACTCAGTTCAACT 57.439 29.630 7.08 0.00 43.14 3.16
3910 5184 5.779241 TCAACTTATTCTTGATGGGGACT 57.221 39.130 0.00 0.00 0.00 3.85
3914 5188 4.164988 ACTTATTCTTGATGGGGACTGGAG 59.835 45.833 0.00 0.00 0.00 3.86
3918 5192 1.274703 TTGATGGGGACTGGAGGAGC 61.275 60.000 0.00 0.00 0.00 4.70
3919 5193 1.383803 GATGGGGACTGGAGGAGCT 60.384 63.158 0.00 0.00 0.00 4.09
3920 5194 1.692042 ATGGGGACTGGAGGAGCTG 60.692 63.158 0.00 0.00 0.00 4.24
3921 5195 2.284995 GGGGACTGGAGGAGCTGT 60.285 66.667 0.00 0.00 0.00 4.40
3922 5196 1.001760 GGGGACTGGAGGAGCTGTA 59.998 63.158 0.00 0.00 0.00 2.74
3923 5197 0.399233 GGGGACTGGAGGAGCTGTAT 60.399 60.000 0.00 0.00 0.00 2.29
3924 5198 1.044611 GGGACTGGAGGAGCTGTATC 58.955 60.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 27 0.544697 ACCAATCGGGATAGCGGTTT 59.455 50.000 0.00 0.00 41.15 3.27
105 109 2.597510 GCCGCCACTTTCCCTTGT 60.598 61.111 0.00 0.00 0.00 3.16
116 120 4.100084 ATACTGCAGCTGCCGCCA 62.100 61.111 34.64 20.18 41.18 5.69
147 151 3.589288 GGAGGAGCCCATATAAATGTCCT 59.411 47.826 0.00 0.00 38.30 3.85
153 157 1.623811 GCGAGGAGGAGCCCATATAAA 59.376 52.381 0.00 0.00 37.37 1.40
395 400 3.119602 TCGCTAGTTGCTGATCTACGTTT 60.120 43.478 0.00 0.00 40.11 3.60
484 489 5.411977 CAGAGGAATACAAGATGGATCATGC 59.588 44.000 0.00 0.00 0.00 4.06
557 562 2.630580 CAGAGTAGGGGAAGGTGATAGC 59.369 54.545 0.00 0.00 0.00 2.97
558 563 2.630580 GCAGAGTAGGGGAAGGTGATAG 59.369 54.545 0.00 0.00 0.00 2.08
559 564 2.247635 AGCAGAGTAGGGGAAGGTGATA 59.752 50.000 0.00 0.00 0.00 2.15
560 565 1.008938 AGCAGAGTAGGGGAAGGTGAT 59.991 52.381 0.00 0.00 0.00 3.06
561 566 0.413832 AGCAGAGTAGGGGAAGGTGA 59.586 55.000 0.00 0.00 0.00 4.02
562 567 0.827368 GAGCAGAGTAGGGGAAGGTG 59.173 60.000 0.00 0.00 0.00 4.00
563 568 0.713579 AGAGCAGAGTAGGGGAAGGT 59.286 55.000 0.00 0.00 0.00 3.50
564 569 1.760029 GAAGAGCAGAGTAGGGGAAGG 59.240 57.143 0.00 0.00 0.00 3.46
565 570 2.693074 GAGAAGAGCAGAGTAGGGGAAG 59.307 54.545 0.00 0.00 0.00 3.46
566 571 2.624557 GGAGAAGAGCAGAGTAGGGGAA 60.625 54.545 0.00 0.00 0.00 3.97
567 572 1.063567 GGAGAAGAGCAGAGTAGGGGA 60.064 57.143 0.00 0.00 0.00 4.81
568 573 1.408969 GGAGAAGAGCAGAGTAGGGG 58.591 60.000 0.00 0.00 0.00 4.79
569 574 1.028905 CGGAGAAGAGCAGAGTAGGG 58.971 60.000 0.00 0.00 0.00 3.53
570 575 1.673920 GTCGGAGAAGAGCAGAGTAGG 59.326 57.143 0.00 0.00 39.69 3.18
571 576 2.612212 GAGTCGGAGAAGAGCAGAGTAG 59.388 54.545 0.00 0.00 39.69 2.57
572 577 2.634600 GAGTCGGAGAAGAGCAGAGTA 58.365 52.381 0.00 0.00 39.69 2.59
573 578 1.459450 GAGTCGGAGAAGAGCAGAGT 58.541 55.000 0.00 0.00 39.69 3.24
574 579 0.376852 CGAGTCGGAGAAGAGCAGAG 59.623 60.000 4.10 0.00 39.69 3.35
575 580 2.472355 CGAGTCGGAGAAGAGCAGA 58.528 57.895 4.10 0.00 39.69 4.26
587 592 0.597637 AACAGTTCAGCACCGAGTCG 60.598 55.000 5.29 5.29 0.00 4.18
588 593 0.861837 CAACAGTTCAGCACCGAGTC 59.138 55.000 0.00 0.00 0.00 3.36
589 594 1.160329 GCAACAGTTCAGCACCGAGT 61.160 55.000 0.00 0.00 0.00 4.18
590 595 1.571460 GCAACAGTTCAGCACCGAG 59.429 57.895 0.00 0.00 0.00 4.63
591 596 1.891919 GGCAACAGTTCAGCACCGA 60.892 57.895 0.00 0.00 0.00 4.69
592 597 1.893808 AGGCAACAGTTCAGCACCG 60.894 57.895 0.00 0.00 41.41 4.94
593 598 1.656441 CAGGCAACAGTTCAGCACC 59.344 57.895 0.00 0.00 41.41 5.01
594 599 1.008079 GCAGGCAACAGTTCAGCAC 60.008 57.895 0.00 0.00 41.41 4.40
595 600 1.152902 AGCAGGCAACAGTTCAGCA 60.153 52.632 0.00 0.00 41.41 4.41
596 601 1.285023 CAGCAGGCAACAGTTCAGC 59.715 57.895 0.00 0.00 41.41 4.26
597 602 1.285023 GCAGCAGGCAACAGTTCAG 59.715 57.895 0.00 0.00 43.97 3.02
598 603 3.435590 GCAGCAGGCAACAGTTCA 58.564 55.556 0.00 0.00 43.97 3.18
1059 1064 4.392166 TAGGAGAGGGGCGTGGCA 62.392 66.667 0.00 0.00 0.00 4.92
1144 1149 9.750125 GGAAGTGAAAATTGAACAGAAATTAGT 57.250 29.630 0.00 0.00 0.00 2.24
1315 1410 5.980715 GCTCTTAAATTTAGGACGGAGAGAG 59.019 44.000 19.57 15.86 33.07 3.20
1316 1411 5.450137 CGCTCTTAAATTTAGGACGGAGAGA 60.450 44.000 19.57 8.43 33.07 3.10
1317 1412 4.740695 CGCTCTTAAATTTAGGACGGAGAG 59.259 45.833 14.17 14.17 34.12 3.20
1318 1413 4.159135 ACGCTCTTAAATTTAGGACGGAGA 59.841 41.667 22.91 12.64 0.00 3.71
1319 1414 4.430908 ACGCTCTTAAATTTAGGACGGAG 58.569 43.478 22.91 13.57 0.00 4.63
1320 1415 4.460948 ACGCTCTTAAATTTAGGACGGA 57.539 40.909 22.91 9.82 0.00 4.69
1321 1416 5.541098 AAACGCTCTTAAATTTAGGACGG 57.459 39.130 22.91 14.27 0.00 4.79
1322 1417 7.059147 GTCAAAAACGCTCTTAAATTTAGGACG 59.941 37.037 20.14 20.14 0.00 4.79
1323 1418 7.858879 TGTCAAAAACGCTCTTAAATTTAGGAC 59.141 33.333 5.96 3.68 0.00 3.85
1324 1419 7.858879 GTGTCAAAAACGCTCTTAAATTTAGGA 59.141 33.333 9.43 9.43 35.42 2.94
1325 1420 7.860872 AGTGTCAAAAACGCTCTTAAATTTAGG 59.139 33.333 0.98 0.98 45.69 2.69
1326 1421 8.782533 AGTGTCAAAAACGCTCTTAAATTTAG 57.217 30.769 0.00 0.00 45.69 1.85
1327 1422 9.872757 CTAGTGTCAAAAACGCTCTTAAATTTA 57.127 29.630 0.00 0.00 45.69 1.40
1328 1423 8.617809 TCTAGTGTCAAAAACGCTCTTAAATTT 58.382 29.630 0.00 0.00 45.69 1.82
1329 1424 8.149973 TCTAGTGTCAAAAACGCTCTTAAATT 57.850 30.769 0.00 0.00 45.69 1.82
1330 1425 7.724305 TCTAGTGTCAAAAACGCTCTTAAAT 57.276 32.000 0.00 0.00 45.69 1.40
1331 1426 7.724305 ATCTAGTGTCAAAAACGCTCTTAAA 57.276 32.000 0.00 0.00 45.69 1.52
1332 1427 8.086522 AGTATCTAGTGTCAAAAACGCTCTTAA 58.913 33.333 0.00 0.00 45.69 1.85
1333 1428 7.600065 AGTATCTAGTGTCAAAAACGCTCTTA 58.400 34.615 0.00 0.00 45.69 2.10
1334 1429 6.456501 AGTATCTAGTGTCAAAAACGCTCTT 58.543 36.000 0.00 0.00 45.69 2.85
1335 1430 6.026947 AGTATCTAGTGTCAAAAACGCTCT 57.973 37.500 0.00 0.00 45.69 4.09
1336 1431 6.707599 AAGTATCTAGTGTCAAAAACGCTC 57.292 37.500 0.00 0.00 45.69 5.03
1338 1433 7.445836 CACTAAGTATCTAGTGTCAAAAACGC 58.554 38.462 3.15 0.00 42.54 4.84
1350 1445 9.613957 CGATTATTCACCACACTAAGTATCTAG 57.386 37.037 0.00 0.00 0.00 2.43
1351 1446 8.080417 GCGATTATTCACCACACTAAGTATCTA 58.920 37.037 0.00 0.00 0.00 1.98
1352 1447 6.924060 GCGATTATTCACCACACTAAGTATCT 59.076 38.462 0.00 0.00 0.00 1.98
1353 1448 6.700081 TGCGATTATTCACCACACTAAGTATC 59.300 38.462 0.00 0.00 0.00 2.24
1360 1455 3.674997 ACTTGCGATTATTCACCACACT 58.325 40.909 0.00 0.00 0.00 3.55
1404 1499 2.105128 GCATGCTACTCCGACGCT 59.895 61.111 11.37 0.00 0.00 5.07
1405 1500 2.202743 TGCATGCTACTCCGACGC 60.203 61.111 20.33 0.00 0.00 5.19
1480 1642 2.877168 CAAAGGATATGACCTGCAGAGC 59.123 50.000 17.39 7.08 40.49 4.09
1482 1644 4.574674 AACAAAGGATATGACCTGCAGA 57.425 40.909 17.39 0.00 40.49 4.26
1571 1734 7.480810 AGTGAAACAAAGTTTATGAACAGTCC 58.519 34.615 2.93 0.00 41.43 3.85
1595 1758 4.260948 GGACACTCTTCAGAAACAAGCAAG 60.261 45.833 0.00 0.00 0.00 4.01
1596 1759 3.627577 GGACACTCTTCAGAAACAAGCAA 59.372 43.478 0.00 0.00 0.00 3.91
1597 1760 3.206150 GGACACTCTTCAGAAACAAGCA 58.794 45.455 0.00 0.00 0.00 3.91
1598 1761 3.206150 TGGACACTCTTCAGAAACAAGC 58.794 45.455 0.00 0.00 0.00 4.01
1625 1790 6.169557 TGTGTTTCCTACTGTATGTGTCTT 57.830 37.500 0.00 0.00 0.00 3.01
1667 1832 3.627395 ATGTCGAAAGGGAGTGCAATA 57.373 42.857 0.00 0.00 0.00 1.90
1669 1834 1.879380 CAATGTCGAAAGGGAGTGCAA 59.121 47.619 0.00 0.00 0.00 4.08
1670 1835 1.202758 ACAATGTCGAAAGGGAGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
1671 1836 1.523758 ACAATGTCGAAAGGGAGTGC 58.476 50.000 0.00 0.00 0.00 4.40
1672 1837 5.902681 TCTATACAATGTCGAAAGGGAGTG 58.097 41.667 0.00 0.00 0.00 3.51
1673 1838 5.069251 CCTCTATACAATGTCGAAAGGGAGT 59.931 44.000 0.00 0.00 0.00 3.85
1674 1839 5.533482 CCTCTATACAATGTCGAAAGGGAG 58.467 45.833 0.00 0.00 0.00 4.30
1676 1841 4.058817 GCCTCTATACAATGTCGAAAGGG 58.941 47.826 0.00 0.00 0.00 3.95
1677 1842 4.747108 CAGCCTCTATACAATGTCGAAAGG 59.253 45.833 0.00 0.00 0.00 3.11
1678 1843 4.747108 CCAGCCTCTATACAATGTCGAAAG 59.253 45.833 0.00 0.00 0.00 2.62
1679 1844 4.442893 CCCAGCCTCTATACAATGTCGAAA 60.443 45.833 0.00 0.00 0.00 3.46
1680 1845 3.069586 CCCAGCCTCTATACAATGTCGAA 59.930 47.826 0.00 0.00 0.00 3.71
1681 1846 2.628178 CCCAGCCTCTATACAATGTCGA 59.372 50.000 0.00 0.00 0.00 4.20
1682 1847 2.365617 ACCCAGCCTCTATACAATGTCG 59.634 50.000 0.00 0.00 0.00 4.35
1683 1848 3.388024 TGACCCAGCCTCTATACAATGTC 59.612 47.826 0.00 0.00 0.00 3.06
1684 1849 3.384168 TGACCCAGCCTCTATACAATGT 58.616 45.455 0.00 0.00 0.00 2.71
1685 1850 4.130118 GTTGACCCAGCCTCTATACAATG 58.870 47.826 0.00 0.00 0.00 2.82
1686 1851 4.040755 AGTTGACCCAGCCTCTATACAAT 58.959 43.478 0.00 0.00 0.00 2.71
1687 1852 3.450904 AGTTGACCCAGCCTCTATACAA 58.549 45.455 0.00 0.00 0.00 2.41
1688 1853 3.116096 AGTTGACCCAGCCTCTATACA 57.884 47.619 0.00 0.00 0.00 2.29
1689 1854 5.810080 ATTAGTTGACCCAGCCTCTATAC 57.190 43.478 0.00 0.00 0.00 1.47
1690 1855 6.409234 CCAAATTAGTTGACCCAGCCTCTATA 60.409 42.308 0.00 0.00 39.87 1.31
1691 1856 5.440610 CAAATTAGTTGACCCAGCCTCTAT 58.559 41.667 0.00 0.00 39.87 1.98
1692 1857 4.324254 CCAAATTAGTTGACCCAGCCTCTA 60.324 45.833 0.00 0.00 39.87 2.43
1693 1858 3.562176 CCAAATTAGTTGACCCAGCCTCT 60.562 47.826 0.00 0.00 39.87 3.69
1694 1859 2.755103 CCAAATTAGTTGACCCAGCCTC 59.245 50.000 0.00 0.00 39.87 4.70
1695 1860 2.378547 TCCAAATTAGTTGACCCAGCCT 59.621 45.455 0.00 0.00 39.87 4.58
1696 1861 2.802719 TCCAAATTAGTTGACCCAGCC 58.197 47.619 0.00 0.00 39.87 4.85
1697 1862 4.381932 CCAATCCAAATTAGTTGACCCAGC 60.382 45.833 0.00 0.00 39.87 4.85
1698 1863 5.016173 TCCAATCCAAATTAGTTGACCCAG 58.984 41.667 0.00 0.00 39.87 4.45
1699 1864 5.004361 TCCAATCCAAATTAGTTGACCCA 57.996 39.130 0.00 0.00 39.87 4.51
1700 1865 4.402474 CCTCCAATCCAAATTAGTTGACCC 59.598 45.833 0.00 0.00 39.87 4.46
1701 1866 4.402474 CCCTCCAATCCAAATTAGTTGACC 59.598 45.833 0.00 0.00 39.87 4.02
1702 1867 5.261216 TCCCTCCAATCCAAATTAGTTGAC 58.739 41.667 0.00 0.00 39.87 3.18
1703 1868 5.015178 ACTCCCTCCAATCCAAATTAGTTGA 59.985 40.000 0.00 0.00 39.87 3.18
1704 1869 5.264395 ACTCCCTCCAATCCAAATTAGTTG 58.736 41.667 0.00 0.00 36.94 3.16
1705 1870 5.536497 ACTCCCTCCAATCCAAATTAGTT 57.464 39.130 0.00 0.00 0.00 2.24
1706 1871 6.848562 ATACTCCCTCCAATCCAAATTAGT 57.151 37.500 0.00 0.00 0.00 2.24
1707 1872 8.605947 TGATATACTCCCTCCAATCCAAATTAG 58.394 37.037 0.00 0.00 0.00 1.73
1708 1873 8.383175 GTGATATACTCCCTCCAATCCAAATTA 58.617 37.037 0.00 0.00 0.00 1.40
1709 1874 7.074237 AGTGATATACTCCCTCCAATCCAAATT 59.926 37.037 0.00 0.00 33.17 1.82
1710 1875 6.564152 AGTGATATACTCCCTCCAATCCAAAT 59.436 38.462 0.00 0.00 33.17 2.32
1711 1876 5.911178 AGTGATATACTCCCTCCAATCCAAA 59.089 40.000 0.00 0.00 33.17 3.28
1712 1877 5.476983 AGTGATATACTCCCTCCAATCCAA 58.523 41.667 0.00 0.00 33.17 3.53
1713 1878 5.093236 AGTGATATACTCCCTCCAATCCA 57.907 43.478 0.00 0.00 33.17 3.41
1749 1914 8.953313 CATTAGCCATGCATATTTAGAGATCAA 58.047 33.333 0.00 0.00 0.00 2.57
1761 1934 8.517056 CATTCAGATTTACATTAGCCATGCATA 58.483 33.333 0.00 0.00 36.14 3.14
1787 1960 5.505286 CATAATTCGCTTGACATCCTTGAC 58.495 41.667 0.00 0.00 0.00 3.18
1940 3082 7.554118 CAGGAAGTGATGGACATAACAGTAAAT 59.446 37.037 2.79 0.00 0.00 1.40
1947 3089 3.375299 GTGCAGGAAGTGATGGACATAAC 59.625 47.826 0.00 0.00 37.66 1.89
1963 3108 1.507141 GGTGAACTTGTCGGTGCAGG 61.507 60.000 0.00 0.00 0.00 4.85
1999 3145 2.978156 ACATTTCCTGCCTTTCCTCA 57.022 45.000 0.00 0.00 0.00 3.86
2073 3229 3.433598 GGCAACAATGGATAGCTACCTCA 60.434 47.826 0.00 0.00 0.00 3.86
2090 3246 2.574018 GGACAGCAAAGGGGGCAAC 61.574 63.158 0.00 0.00 0.00 4.17
2156 3319 9.796120 TGTTTTGTTAAGGAAAAAGACATACAG 57.204 29.630 0.00 0.00 0.00 2.74
2250 3427 3.181497 CCTTTGCAGTCACCCATAAATCG 60.181 47.826 0.00 0.00 0.00 3.34
2262 3439 2.024414 ACACCAACTTCCTTTGCAGTC 58.976 47.619 0.00 0.00 0.00 3.51
2325 3502 5.174395 CGAGAATGAGAGTTGACCTGAATT 58.826 41.667 0.00 0.00 0.00 2.17
2412 3590 3.093814 AGCAGAATCCAAACATCATGCA 58.906 40.909 0.00 0.00 34.93 3.96
2442 3620 4.487714 AGCCTGATCTATTTTGTTCGGA 57.512 40.909 0.00 0.00 0.00 4.55
2444 3622 7.348201 GTGATTAGCCTGATCTATTTTGTTCG 58.652 38.462 0.00 0.00 0.00 3.95
2484 3662 3.817647 GACAGGAACCTCATATGGCATTC 59.182 47.826 4.78 4.33 0.00 2.67
2486 3664 3.051581 AGACAGGAACCTCATATGGCAT 58.948 45.455 4.88 4.88 0.00 4.40
2529 3707 5.198965 AGGTAATCAAATCAGCAGCAGATT 58.801 37.500 7.20 7.20 37.30 2.40
2557 3735 9.756571 TCATAGGTTATTAAAAGGTAAAAGGCA 57.243 29.630 0.00 0.00 0.00 4.75
2775 3956 8.903820 CAAAGGAAAATAGTAGGATTTAGTGGG 58.096 37.037 0.00 0.00 0.00 4.61
2776 3957 9.462606 ACAAAGGAAAATAGTAGGATTTAGTGG 57.537 33.333 0.00 0.00 0.00 4.00
2825 4009 6.870439 CCAGATCAAGTTTTTCCTTCAATTCC 59.130 38.462 0.00 0.00 0.00 3.01
2840 4024 7.503566 TCTTTTCTTTCAACATCCAGATCAAGT 59.496 33.333 0.00 0.00 0.00 3.16
2956 4141 8.974060 ACAGTCCAGAAGTTTATTAAGTGAAA 57.026 30.769 0.00 0.00 0.00 2.69
2957 4142 8.974060 AACAGTCCAGAAGTTTATTAAGTGAA 57.026 30.769 0.00 0.00 0.00 3.18
2958 4143 8.836413 CAAACAGTCCAGAAGTTTATTAAGTGA 58.164 33.333 0.00 0.00 34.03 3.41
2959 4144 8.621286 ACAAACAGTCCAGAAGTTTATTAAGTG 58.379 33.333 0.00 0.00 34.03 3.16
2960 4145 8.747538 ACAAACAGTCCAGAAGTTTATTAAGT 57.252 30.769 0.00 0.00 34.03 2.24
2961 4146 9.665264 GAACAAACAGTCCAGAAGTTTATTAAG 57.335 33.333 0.00 0.00 34.03 1.85
2962 4147 9.403583 AGAACAAACAGTCCAGAAGTTTATTAA 57.596 29.630 0.00 0.00 34.03 1.40
3029 4227 1.591703 GACATGACCAGGTCAGCGA 59.408 57.895 26.56 4.01 46.04 4.93
3031 4229 0.459237 CTCGACATGACCAGGTCAGC 60.459 60.000 26.56 16.88 46.04 4.26
3042 4240 5.586339 ACTCATCAGTTGATACTCGACATG 58.414 41.667 0.00 0.00 33.17 3.21
3052 4250 5.126869 CACTACCTCAGACTCATCAGTTGAT 59.873 44.000 0.00 0.00 32.72 2.57
3073 4271 4.956582 AGGGAGTACATAAGTAACCCACT 58.043 43.478 17.87 0.00 44.57 4.00
3090 4288 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3092 4290 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3093 4291 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3094 4292 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3096 4294 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3097 4295 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3098 4296 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3099 4297 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3100 4298 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
3101 4299 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
3102 4300 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
3103 4301 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
3104 4302 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
3105 4303 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
3106 4304 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
3107 4305 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
3108 4306 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
3109 4307 6.985645 TCCTTTTTGTCCATTTTGATGACAAG 59.014 34.615 0.00 0.00 37.13 3.16
3110 4308 6.882656 TCCTTTTTGTCCATTTTGATGACAA 58.117 32.000 0.00 0.00 34.47 3.18
3111 4309 6.098124 ACTCCTTTTTGTCCATTTTGATGACA 59.902 34.615 0.00 0.00 0.00 3.58
3112 4310 6.515832 ACTCCTTTTTGTCCATTTTGATGAC 58.484 36.000 0.00 0.00 0.00 3.06
3113 4311 6.729690 ACTCCTTTTTGTCCATTTTGATGA 57.270 33.333 0.00 0.00 0.00 2.92
3114 4312 7.661040 ACTACTCCTTTTTGTCCATTTTGATG 58.339 34.615 0.00 0.00 0.00 3.07
3115 4313 7.839680 ACTACTCCTTTTTGTCCATTTTGAT 57.160 32.000 0.00 0.00 0.00 2.57
3116 4314 7.041644 CGTACTACTCCTTTTTGTCCATTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3117 4315 7.075741 CGTACTACTCCTTTTTGTCCATTTTG 58.924 38.462 0.00 0.00 0.00 2.44
3118 4316 6.293790 GCGTACTACTCCTTTTTGTCCATTTT 60.294 38.462 0.00 0.00 0.00 1.82
3119 4317 5.180680 GCGTACTACTCCTTTTTGTCCATTT 59.819 40.000 0.00 0.00 0.00 2.32
3120 4318 4.694037 GCGTACTACTCCTTTTTGTCCATT 59.306 41.667 0.00 0.00 0.00 3.16
3121 4319 4.251268 GCGTACTACTCCTTTTTGTCCAT 58.749 43.478 0.00 0.00 0.00 3.41
3122 4320 3.069872 TGCGTACTACTCCTTTTTGTCCA 59.930 43.478 0.00 0.00 0.00 4.02
3123 4321 3.656559 TGCGTACTACTCCTTTTTGTCC 58.343 45.455 0.00 0.00 0.00 4.02
3124 4322 5.857822 ATTGCGTACTACTCCTTTTTGTC 57.142 39.130 0.00 0.00 0.00 3.18
3125 4323 6.707161 TGTTATTGCGTACTACTCCTTTTTGT 59.293 34.615 0.00 0.00 0.00 2.83
3126 4324 7.095355 ACTGTTATTGCGTACTACTCCTTTTTG 60.095 37.037 0.00 0.00 0.00 2.44
3127 4325 6.932960 ACTGTTATTGCGTACTACTCCTTTTT 59.067 34.615 0.00 0.00 0.00 1.94
3128 4326 6.461640 ACTGTTATTGCGTACTACTCCTTTT 58.538 36.000 0.00 0.00 0.00 2.27
3129 4327 6.034161 ACTGTTATTGCGTACTACTCCTTT 57.966 37.500 0.00 0.00 0.00 3.11
3130 4328 5.656213 ACTGTTATTGCGTACTACTCCTT 57.344 39.130 0.00 0.00 0.00 3.36
3131 4329 5.047519 ACAACTGTTATTGCGTACTACTCCT 60.048 40.000 0.00 0.00 32.47 3.69
3132 4330 5.166398 ACAACTGTTATTGCGTACTACTCC 58.834 41.667 0.00 0.00 32.47 3.85
3133 4331 6.183360 GGAACAACTGTTATTGCGTACTACTC 60.183 42.308 0.00 0.00 38.56 2.59
3134 4332 5.636543 GGAACAACTGTTATTGCGTACTACT 59.363 40.000 0.00 0.00 38.56 2.57
3135 4333 5.636543 AGGAACAACTGTTATTGCGTACTAC 59.363 40.000 0.00 0.00 38.56 2.73
3136 4334 5.786311 AGGAACAACTGTTATTGCGTACTA 58.214 37.500 0.00 0.00 38.56 1.82
3137 4335 4.638304 AGGAACAACTGTTATTGCGTACT 58.362 39.130 0.00 0.00 38.56 2.73
3138 4336 4.433805 CGAGGAACAACTGTTATTGCGTAC 60.434 45.833 0.00 0.00 38.56 3.67
3139 4337 3.676172 CGAGGAACAACTGTTATTGCGTA 59.324 43.478 0.00 0.00 38.56 4.42
3140 4338 2.478894 CGAGGAACAACTGTTATTGCGT 59.521 45.455 0.00 0.00 38.56 5.24
3141 4339 2.724839 GCGAGGAACAACTGTTATTGCG 60.725 50.000 0.00 0.00 38.56 4.85
3142 4340 2.225491 TGCGAGGAACAACTGTTATTGC 59.775 45.455 10.52 10.52 38.56 3.56
3143 4341 4.481930 TTGCGAGGAACAACTGTTATTG 57.518 40.909 0.00 0.00 38.56 1.90
3144 4342 5.705609 AATTGCGAGGAACAACTGTTATT 57.294 34.783 0.00 0.00 38.56 1.40
3147 4345 5.460646 CATAAATTGCGAGGAACAACTGTT 58.539 37.500 0.00 0.00 41.64 3.16
3163 4361 8.984855 CCATCAATATCCATAAGGCCATAAATT 58.015 33.333 5.01 0.00 33.74 1.82
3165 4363 6.380846 GCCATCAATATCCATAAGGCCATAAA 59.619 38.462 5.01 0.00 34.94 1.40
3168 4366 4.016851 AGCCATCAATATCCATAAGGCCAT 60.017 41.667 5.01 0.00 41.69 4.40
3173 4371 8.641498 AACCTAAAGCCATCAATATCCATAAG 57.359 34.615 0.00 0.00 0.00 1.73
3185 4383 7.807977 TGAGATCAATAAACCTAAAGCCATC 57.192 36.000 0.00 0.00 0.00 3.51
3189 4387 9.294030 CATGTTTGAGATCAATAAACCTAAAGC 57.706 33.333 13.44 0.00 35.55 3.51
3190 4388 9.294030 GCATGTTTGAGATCAATAAACCTAAAG 57.706 33.333 13.44 4.54 35.55 1.85
3207 4405 4.809958 CCTGTGTTTTTCATGCATGTTTGA 59.190 37.500 25.43 4.99 0.00 2.69
3225 4423 4.803426 GAGCCTCGGACGCCTGTG 62.803 72.222 0.00 0.00 0.00 3.66
3227 4425 4.504916 CAGAGCCTCGGACGCCTG 62.505 72.222 0.00 0.58 0.00 4.85
3228 4426 4.742649 TCAGAGCCTCGGACGCCT 62.743 66.667 0.00 0.00 0.00 5.52
3229 4427 4.200283 CTCAGAGCCTCGGACGCC 62.200 72.222 0.00 0.00 0.00 5.68
3239 4437 1.020437 GGCATTGTAAGGCTCAGAGC 58.980 55.000 14.69 14.69 41.46 4.09
3240 4438 2.286872 CAGGCATTGTAAGGCTCAGAG 58.713 52.381 1.15 0.00 40.22 3.35
3243 4441 0.038021 TGCAGGCATTGTAAGGCTCA 59.962 50.000 1.15 0.00 40.22 4.26
3256 4454 3.429881 GCAAACTAAGAAACATTGCAGGC 59.570 43.478 4.10 0.00 44.29 4.85
3303 4501 8.623903 TCTCATAAATAAATACTTTGCCTGCAG 58.376 33.333 6.78 6.78 0.00 4.41
3306 4504 9.403110 GCATCTCATAAATAAATACTTTGCCTG 57.597 33.333 0.00 0.00 0.00 4.85
3307 4505 9.135189 TGCATCTCATAAATAAATACTTTGCCT 57.865 29.630 0.00 0.00 0.00 4.75
3395 4593 6.022958 TCCATGCCTAGGAAGCTATTACATA 58.977 40.000 14.75 0.00 30.71 2.29
3465 4664 5.580661 TCGTTCATGGCATAATCACAAATG 58.419 37.500 0.00 0.00 0.00 2.32
3466 4665 5.833406 TCGTTCATGGCATAATCACAAAT 57.167 34.783 0.00 0.00 0.00 2.32
3506 4705 8.746530 GCTGTTGCCTATAGTATGGTTACTATA 58.253 37.037 10.76 10.76 45.61 1.31
3507 4706 7.455008 AGCTGTTGCCTATAGTATGGTTACTAT 59.545 37.037 9.81 9.81 44.58 2.12
3604 4871 6.186957 ACAATTGCAACTCTTGGTATATCCA 58.813 36.000 14.11 0.00 45.60 3.41
3613 4880 4.445385 GCCAGTTTACAATTGCAACTCTTG 59.555 41.667 16.97 5.40 0.00 3.02
3661 4928 6.560253 AAACTGAAACTAAATGATGCGTCT 57.440 33.333 7.58 0.00 0.00 4.18
3703 4970 4.679662 TCGCTAACTTGAATAGTACAGGC 58.320 43.478 0.00 0.00 35.54 4.85
3711 4978 5.950758 TTTGCCTTTCGCTAACTTGAATA 57.049 34.783 0.00 0.00 38.78 1.75
3715 4982 5.691754 AGAAAATTTGCCTTTCGCTAACTTG 59.308 36.000 0.00 0.00 37.76 3.16
3795 5069 1.215423 GGCAGAATACTCCCACCCAAT 59.785 52.381 0.00 0.00 0.00 3.16
3815 5089 7.702348 GCTGTAACATCTTAGGCTTTAAAATGG 59.298 37.037 0.00 0.00 0.00 3.16
3853 5127 6.947258 ACAAATTCAGTTTTGCTAATGTTGC 58.053 32.000 0.00 0.00 39.65 4.17
3893 5167 3.459598 CCTCCAGTCCCCATCAAGAATAA 59.540 47.826 0.00 0.00 0.00 1.40
3899 5173 1.274703 GCTCCTCCAGTCCCCATCAA 61.275 60.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.