Multiple sequence alignment - TraesCS5D01G145600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G145600 chr5D 100.000 2507 0 0 1 2507 232404646 232402140 0.000000e+00 4630.0
1 TraesCS5D01G145600 chr5D 100.000 412 0 0 2734 3145 232401913 232401502 0.000000e+00 761.0
2 TraesCS5D01G145600 chr5D 92.453 53 4 0 2450 2502 439224825 439224773 3.360000e-10 76.8
3 TraesCS5D01G145600 chr5A 94.273 2200 96 12 1 2181 323369652 323371840 0.000000e+00 3338.0
4 TraesCS5D01G145600 chr5A 85.714 238 25 5 2747 2976 323383059 323383295 3.130000e-60 243.0
5 TraesCS5D01G145600 chr5A 82.564 195 26 4 2263 2452 323382877 323383068 6.980000e-37 165.0
6 TraesCS5D01G145600 chr5A 85.625 160 18 5 2218 2373 295076274 295076432 2.510000e-36 163.0
7 TraesCS5D01G145600 chr5A 94.000 50 3 0 2453 2502 341691938 341691889 3.360000e-10 76.8
8 TraesCS5D01G145600 chr5B 94.430 1580 69 11 1 1574 272676363 272677929 0.000000e+00 2412.0
9 TraesCS5D01G145600 chr5B 94.817 656 32 2 1600 2254 272677920 272678574 0.000000e+00 1022.0
10 TraesCS5D01G145600 chr5B 91.304 230 20 0 2747 2976 272679678 272679907 6.550000e-82 315.0
11 TraesCS5D01G145600 chr5B 89.447 199 21 0 2254 2452 272679489 272679687 5.210000e-63 252.0
12 TraesCS5D01G145600 chr5B 86.207 145 17 3 2232 2373 243421394 243421538 1.510000e-33 154.0
13 TraesCS5D01G145600 chr3A 98.802 167 2 0 2979 3145 676076430 676076596 6.590000e-77 298.0
14 TraesCS5D01G145600 chr6D 98.225 169 3 0 2977 3145 419557068 419556900 2.370000e-76 296.0
15 TraesCS5D01G145600 chr2D 98.225 169 3 0 2977 3145 509629553 509629721 2.370000e-76 296.0
16 TraesCS5D01G145600 chr2D 93.229 192 8 4 2956 3145 299545553 299545741 8.590000e-71 278.0
17 TraesCS5D01G145600 chr2D 92.453 53 4 0 2450 2502 549939756 549939704 3.360000e-10 76.8
18 TraesCS5D01G145600 chr1D 98.225 169 3 0 2977 3145 274507024 274507192 2.370000e-76 296.0
19 TraesCS5D01G145600 chr1D 92.593 54 4 0 2449 2502 297541683 297541630 9.350000e-11 78.7
20 TraesCS5D01G145600 chr4D 96.591 176 6 0 2970 3145 78433455 78433630 3.070000e-75 292.0
21 TraesCS5D01G145600 chr4D 83.871 155 19 5 2219 2369 335774436 335774284 3.270000e-30 143.0
22 TraesCS5D01G145600 chr2A 95.556 180 6 2 2966 3145 334630937 334630760 1.430000e-73 287.0
23 TraesCS5D01G145600 chr3D 94.595 185 7 3 2962 3144 374582173 374582356 1.850000e-72 283.0
24 TraesCS5D01G145600 chr3D 85.621 153 20 2 2219 2369 85449368 85449520 3.250000e-35 159.0
25 TraesCS5D01G145600 chr6A 94.086 186 9 2 2960 3145 60271025 60271208 6.640000e-72 281.0
26 TraesCS5D01G145600 chr6A 87.857 140 9 7 2235 2369 263886881 263887017 1.170000e-34 158.0
27 TraesCS5D01G145600 chr3B 86.364 154 18 2 2219 2369 135687304 135687457 6.980000e-37 165.0
28 TraesCS5D01G145600 chr3B 95.960 99 4 0 251 349 182420298 182420200 9.030000e-36 161.0
29 TraesCS5D01G145600 chr1A 84.472 161 16 7 2219 2373 117188147 117188304 1.950000e-32 150.0
30 TraesCS5D01G145600 chr4A 94.231 52 2 1 2452 2502 607467929 607467878 9.350000e-11 78.7
31 TraesCS5D01G145600 chr4A 87.097 62 7 1 2446 2507 330213887 330213947 5.630000e-08 69.4
32 TraesCS5D01G145600 chr1B 91.379 58 4 1 2450 2507 52610101 52610045 9.350000e-11 78.7
33 TraesCS5D01G145600 chr1B 89.655 58 5 1 2450 2507 52485636 52485580 4.350000e-09 73.1
34 TraesCS5D01G145600 chr7A 94.000 50 3 0 2453 2502 15123302 15123351 3.360000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G145600 chr5D 232401502 232404646 3144 True 2695.50 4630 100.0000 1 3145 2 chr5D.!!$R2 3144
1 TraesCS5D01G145600 chr5A 323369652 323371840 2188 False 3338.00 3338 94.2730 1 2181 1 chr5A.!!$F2 2180
2 TraesCS5D01G145600 chr5B 272676363 272679907 3544 False 1000.25 2412 92.4995 1 2976 4 chr5B.!!$F2 2975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 959 1.202604 AACCGTGGACACACAGTTAGG 60.203 52.381 3.12 0.0 44.2 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2733 3704 0.038159 CGCGTGATCTTAGGATCCCC 60.038 60.0 8.55 2.6 45.62 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 8.467598 ACACTTACATACTATAGAATATGGGCG 58.532 37.037 6.78 1.41 33.79 6.13
785 801 3.499537 GCCATCTCAATTATCGCATGTGA 59.500 43.478 12.12 12.12 0.00 3.58
901 917 3.524541 CCCATTAGTTTACGCGGTTACT 58.475 45.455 12.47 12.58 0.00 2.24
933 949 7.364149 ACCATATATACTAAAACCGTGGACA 57.636 36.000 0.00 0.00 0.00 4.02
943 959 1.202604 AACCGTGGACACACAGTTAGG 60.203 52.381 3.12 0.00 44.20 2.69
975 991 2.128853 CTCTGAGATCGAGGCGAGGC 62.129 65.000 0.00 0.00 39.91 4.70
1040 1056 3.184683 CAGCTCGTCGAGGCTTGC 61.185 66.667 23.09 9.70 36.59 4.01
1073 1089 4.124351 TCCTACGGCGGCGTTGAG 62.124 66.667 41.52 31.34 0.00 3.02
1232 1248 1.497722 CCGCGTTGAAGCTTCTTCC 59.502 57.895 26.09 13.03 34.40 3.46
1260 1276 5.236695 CGATCATTCTCAAGTTGATGATGCT 59.763 40.000 20.11 12.53 30.48 3.79
1314 1330 2.096248 AGAGTCAGGAAGATCGTCACC 58.904 52.381 10.88 2.16 0.00 4.02
1317 1333 1.519455 CAGGAAGATCGTCACCGGC 60.519 63.158 10.88 0.00 33.95 6.13
1389 1405 2.828520 CAAGAGAAGGTGAGGAGCACTA 59.171 50.000 0.00 0.00 46.86 2.74
1399 1415 4.384208 GGTGAGGAGCACTACATATTTGGT 60.384 45.833 0.00 0.00 46.86 3.67
1405 1421 6.992715 AGGAGCACTACATATTTGGTTATGTC 59.007 38.462 0.66 0.00 40.93 3.06
1407 1423 6.578944 AGCACTACATATTTGGTTATGTCGA 58.421 36.000 0.66 0.00 40.93 4.20
1408 1424 6.701841 AGCACTACATATTTGGTTATGTCGAG 59.298 38.462 0.66 0.00 40.93 4.04
1409 1425 6.479001 GCACTACATATTTGGTTATGTCGAGT 59.521 38.462 0.66 0.00 40.93 4.18
1410 1426 7.011109 GCACTACATATTTGGTTATGTCGAGTT 59.989 37.037 0.66 0.00 40.93 3.01
1430 1446 8.991026 TCGAGTTAATAATCGAGAAAAACCAAA 58.009 29.630 6.36 0.00 42.61 3.28
1431 1447 9.769093 CGAGTTAATAATCGAGAAAAACCAAAT 57.231 29.630 0.00 0.00 41.40 2.32
1437 1454 4.752661 TCGAGAAAAACCAAATAACGGG 57.247 40.909 0.00 0.00 0.00 5.28
1515 1532 0.179100 CTCACTACGATGGCCACCAG 60.179 60.000 8.16 4.72 36.75 4.00
1536 1553 4.020218 CAGTGGAGGAAGTATGGTCAGAAA 60.020 45.833 0.00 0.00 0.00 2.52
1574 1627 3.577919 AGCACCCTAGGTACATAAGAGG 58.422 50.000 8.29 0.00 32.11 3.69
1575 1628 3.206866 AGCACCCTAGGTACATAAGAGGA 59.793 47.826 8.29 0.00 32.11 3.71
1579 1632 6.312529 CACCCTAGGTACATAAGAGGATACA 58.687 44.000 8.29 0.00 33.40 2.29
1580 1633 6.208994 CACCCTAGGTACATAAGAGGATACAC 59.791 46.154 8.29 0.00 33.40 2.90
1581 1634 6.125979 ACCCTAGGTACATAAGAGGATACACA 60.126 42.308 8.29 0.00 33.40 3.72
1582 1635 6.954684 CCCTAGGTACATAAGAGGATACACAT 59.045 42.308 8.29 0.00 41.41 3.21
1583 1636 8.114102 CCCTAGGTACATAAGAGGATACACATA 58.886 40.741 8.29 0.00 41.41 2.29
1584 1637 9.529823 CCTAGGTACATAAGAGGATACACATAA 57.470 37.037 0.00 0.00 41.41 1.90
1594 1647 7.559590 AGAGGATACACATAATTTCTGTTGC 57.440 36.000 0.00 0.00 41.41 4.17
1595 1648 6.258727 AGAGGATACACATAATTTCTGTTGCG 59.741 38.462 0.00 0.00 41.41 4.85
1596 1649 5.880332 AGGATACACATAATTTCTGTTGCGT 59.120 36.000 0.00 0.00 41.41 5.24
1597 1650 7.045416 AGGATACACATAATTTCTGTTGCGTA 58.955 34.615 0.00 0.00 41.41 4.42
1598 1651 7.715249 AGGATACACATAATTTCTGTTGCGTAT 59.285 33.333 0.00 0.00 41.41 3.06
1599 1652 8.342634 GGATACACATAATTTCTGTTGCGTATT 58.657 33.333 0.00 0.00 0.00 1.89
1602 1655 8.035165 ACACATAATTTCTGTTGCGTATTACA 57.965 30.769 0.00 0.00 0.00 2.41
1603 1656 8.673711 ACACATAATTTCTGTTGCGTATTACAT 58.326 29.630 0.00 0.00 0.00 2.29
1604 1657 9.158364 CACATAATTTCTGTTGCGTATTACATC 57.842 33.333 0.00 0.00 0.00 3.06
1605 1658 8.888716 ACATAATTTCTGTTGCGTATTACATCA 58.111 29.630 0.00 0.00 0.00 3.07
1606 1659 9.373750 CATAATTTCTGTTGCGTATTACATCAG 57.626 33.333 0.00 0.00 36.58 2.90
1607 1660 7.609760 AATTTCTGTTGCGTATTACATCAGA 57.390 32.000 0.00 0.00 40.40 3.27
1608 1661 6.647212 TTTCTGTTGCGTATTACATCAGAG 57.353 37.500 0.00 0.00 42.04 3.35
1609 1662 5.576447 TCTGTTGCGTATTACATCAGAGA 57.424 39.130 0.00 0.00 38.38 3.10
1610 1663 6.149129 TCTGTTGCGTATTACATCAGAGAT 57.851 37.500 0.00 0.00 38.38 2.75
1611 1664 6.573434 TCTGTTGCGTATTACATCAGAGATT 58.427 36.000 0.00 0.00 38.38 2.40
1612 1665 7.712797 TCTGTTGCGTATTACATCAGAGATTA 58.287 34.615 0.00 0.00 38.38 1.75
1756 1809 0.657312 CAACAGCAGCAACAAGACGA 59.343 50.000 0.00 0.00 0.00 4.20
1775 1828 3.823330 GGCGTCGACGATGACCCT 61.823 66.667 39.74 0.00 43.02 4.34
1895 1948 3.803162 GGGGGAGAGGAGCTTGCC 61.803 72.222 0.00 0.00 0.00 4.52
1925 1978 0.585357 GCCAGTGCAGCAATATCTCG 59.415 55.000 0.00 0.00 37.47 4.04
1941 1994 0.734253 CTCGGTGACTTGCTCTTCGG 60.734 60.000 0.00 0.00 0.00 4.30
2057 2113 5.108187 ACCAGTATGATCAGCTGTTTGAT 57.892 39.130 21.31 5.18 39.69 2.57
2080 2136 1.082366 CTTCGTTTTCGCCGTTGGG 60.082 57.895 0.00 0.00 43.73 4.12
2098 2154 3.179339 TTTGGGGACGGCTTGGGA 61.179 61.111 0.00 0.00 0.00 4.37
2106 2162 1.048601 GACGGCTTGGGAGATGGATA 58.951 55.000 0.00 0.00 0.00 2.59
2145 2201 4.320608 CAAAAGTTTGGAGGCTGCTAAA 57.679 40.909 7.74 3.69 34.59 1.85
2168 2224 5.385396 AATAAAATTCGGATCACGTCGAC 57.615 39.130 5.18 5.18 44.69 4.20
2183 2239 3.426525 ACGTCGACGGATGAGTTAAAAAC 59.573 43.478 37.89 0.00 44.95 2.43
2197 2253 8.942669 TGAGTTAAAAACATGTTATGTAAGCG 57.057 30.769 12.39 0.00 44.07 4.68
2268 3239 9.125026 GATGGTTTGAATATTTCAGTATGGACT 57.875 33.333 0.00 0.00 41.38 3.85
2288 3259 6.094061 GGACTATATACGGACTGAAATGAGC 58.906 44.000 0.00 0.00 0.00 4.26
2289 3260 6.294564 GGACTATATACGGACTGAAATGAGCA 60.295 42.308 0.00 0.00 0.00 4.26
2291 3262 7.497595 ACTATATACGGACTGAAATGAGCAAA 58.502 34.615 0.00 0.00 0.00 3.68
2292 3263 7.985184 ACTATATACGGACTGAAATGAGCAAAA 59.015 33.333 0.00 0.00 0.00 2.44
2321 3292 9.378551 ACACATGAAAACGTGTCTATATACATT 57.621 29.630 0.00 0.00 42.61 2.71
2364 3335 8.848474 AACATCTTATATTTATGAACGGAGGG 57.152 34.615 0.00 0.00 0.00 4.30
2379 3350 5.277857 ACGGAGGGAGTACTTAATTGATG 57.722 43.478 0.00 0.00 0.00 3.07
2385 3356 6.106673 AGGGAGTACTTAATTGATGTTGACG 58.893 40.000 0.00 0.00 0.00 4.35
2396 3367 2.231721 TGATGTTGACGTTATGGACCGA 59.768 45.455 0.00 0.00 0.00 4.69
2399 3370 3.666274 TGTTGACGTTATGGACCGAAAT 58.334 40.909 0.00 0.00 0.00 2.17
2408 3379 2.649531 TGGACCGAAATCCAGTTGTT 57.350 45.000 0.00 0.00 44.14 2.83
2411 3382 2.882137 GGACCGAAATCCAGTTGTTCAA 59.118 45.455 0.00 0.00 38.77 2.69
2449 3420 8.891671 ATGTAAAGAAAAAGTGTTTCATGCAT 57.108 26.923 8.50 8.46 0.00 3.96
2450 3421 8.715191 TGTAAAGAAAAAGTGTTTCATGCATT 57.285 26.923 8.50 0.00 0.00 3.56
2451 3422 9.160496 TGTAAAGAAAAAGTGTTTCATGCATTT 57.840 25.926 8.50 2.61 0.00 2.32
2452 3423 9.986833 GTAAAGAAAAAGTGTTTCATGCATTTT 57.013 25.926 8.50 1.98 0.00 1.82
2506 3477 6.944234 AAGATTTAAGCATTACACCTAGGC 57.056 37.500 9.30 0.00 0.00 3.93
2774 3745 4.391830 CGTTTACTTGGACATGTAGCACAT 59.608 41.667 0.00 0.00 39.91 3.21
2844 3815 0.973632 TGGGTACGAACTGTGATGCT 59.026 50.000 0.00 0.00 0.00 3.79
2854 3825 6.142817 ACGAACTGTGATGCTGTTATTTTTC 58.857 36.000 0.00 0.00 38.98 2.29
2860 3831 7.768120 ACTGTGATGCTGTTATTTTTCCAAAAA 59.232 29.630 0.00 0.00 41.59 1.94
2863 3834 9.384682 GTGATGCTGTTATTTTTCCAAAAATTG 57.615 29.630 13.77 5.65 43.91 2.32
2864 3835 9.118300 TGATGCTGTTATTTTTCCAAAAATTGT 57.882 25.926 13.77 0.00 43.91 2.71
2884 3855 9.936759 AAATTGTGAAACCGGATGTTAATAAAT 57.063 25.926 9.46 0.00 35.67 1.40
2914 3885 1.202510 GCAATCCAGCACAAACAACCA 60.203 47.619 0.00 0.00 0.00 3.67
2924 3895 3.494251 GCACAAACAACCAATCAATCACC 59.506 43.478 0.00 0.00 0.00 4.02
2928 3899 4.335400 AACAACCAATCAATCACCCAAC 57.665 40.909 0.00 0.00 0.00 3.77
2931 3902 1.203001 ACCAATCAATCACCCAACGGT 60.203 47.619 0.00 0.00 46.31 4.83
2946 3917 7.449086 TCACCCAACGGTTAAATTAGAAAGAAT 59.551 33.333 0.00 0.00 42.04 2.40
2976 3947 4.520111 GGATATTGTACCAGCATGCAATCA 59.480 41.667 21.98 8.58 34.05 2.57
2977 3948 3.788333 ATTGTACCAGCATGCAATCAC 57.212 42.857 21.98 12.52 31.97 3.06
2978 3949 2.495155 TGTACCAGCATGCAATCACT 57.505 45.000 21.98 0.00 31.97 3.41
2979 3950 2.086094 TGTACCAGCATGCAATCACTG 58.914 47.619 21.98 7.97 31.97 3.66
2980 3951 2.290197 TGTACCAGCATGCAATCACTGA 60.290 45.455 21.98 0.00 30.90 3.41
2981 3952 1.913778 ACCAGCATGCAATCACTGAA 58.086 45.000 21.98 0.00 30.90 3.02
2982 3953 1.816835 ACCAGCATGCAATCACTGAAG 59.183 47.619 21.98 0.00 30.90 3.02
2983 3954 1.134367 CCAGCATGCAATCACTGAAGG 59.866 52.381 21.98 1.78 30.90 3.46
2984 3955 2.089201 CAGCATGCAATCACTGAAGGA 58.911 47.619 21.98 0.00 30.90 3.36
2985 3956 2.490509 CAGCATGCAATCACTGAAGGAA 59.509 45.455 21.98 0.00 30.90 3.36
2986 3957 3.057104 CAGCATGCAATCACTGAAGGAAA 60.057 43.478 21.98 0.00 30.90 3.13
2987 3958 3.767673 AGCATGCAATCACTGAAGGAAAT 59.232 39.130 21.98 0.00 0.00 2.17
2988 3959 4.951715 AGCATGCAATCACTGAAGGAAATA 59.048 37.500 21.98 0.00 0.00 1.40
2989 3960 5.597182 AGCATGCAATCACTGAAGGAAATAT 59.403 36.000 21.98 0.00 0.00 1.28
2990 3961 5.690409 GCATGCAATCACTGAAGGAAATATG 59.310 40.000 14.21 0.00 0.00 1.78
2991 3962 5.252969 TGCAATCACTGAAGGAAATATGC 57.747 39.130 0.00 0.00 0.00 3.14
2992 3963 4.098349 TGCAATCACTGAAGGAAATATGCC 59.902 41.667 0.00 0.00 0.00 4.40
2993 3964 4.500375 GCAATCACTGAAGGAAATATGCCC 60.500 45.833 0.00 0.00 0.00 5.36
2994 3965 4.803329 ATCACTGAAGGAAATATGCCCT 57.197 40.909 0.00 0.00 0.00 5.19
2995 3966 5.912149 ATCACTGAAGGAAATATGCCCTA 57.088 39.130 0.00 0.00 31.36 3.53
2996 3967 5.296151 TCACTGAAGGAAATATGCCCTAG 57.704 43.478 0.00 0.00 31.36 3.02
2997 3968 4.968719 TCACTGAAGGAAATATGCCCTAGA 59.031 41.667 0.00 0.00 31.36 2.43
2998 3969 5.070981 TCACTGAAGGAAATATGCCCTAGAG 59.929 44.000 0.00 0.46 31.36 2.43
2999 3970 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
3015 3986 7.881775 CCCTAGAGGCAATAATAAAGTTGTT 57.118 36.000 0.00 0.00 0.00 2.83
3016 3987 8.974060 CCCTAGAGGCAATAATAAAGTTGTTA 57.026 34.615 0.00 0.00 0.00 2.41
3017 3988 9.574516 CCCTAGAGGCAATAATAAAGTTGTTAT 57.425 33.333 0.00 0.00 0.00 1.89
3076 4047 5.749596 TCATGCTGGAATTGTATTAACCG 57.250 39.130 0.00 0.00 0.00 4.44
3077 4048 4.578516 TCATGCTGGAATTGTATTAACCGG 59.421 41.667 0.00 0.00 0.00 5.28
3078 4049 4.223556 TGCTGGAATTGTATTAACCGGA 57.776 40.909 9.46 0.00 0.00 5.14
3079 4050 4.590918 TGCTGGAATTGTATTAACCGGAA 58.409 39.130 9.46 0.00 0.00 4.30
3080 4051 5.010933 TGCTGGAATTGTATTAACCGGAAA 58.989 37.500 9.46 1.61 0.00 3.13
3081 4052 5.106078 TGCTGGAATTGTATTAACCGGAAAC 60.106 40.000 9.46 0.00 0.00 2.78
3082 4053 5.124936 GCTGGAATTGTATTAACCGGAAACT 59.875 40.000 9.46 0.00 0.00 2.66
3083 4054 6.349860 GCTGGAATTGTATTAACCGGAAACTT 60.350 38.462 9.46 0.00 0.00 2.66
3084 4055 6.915349 TGGAATTGTATTAACCGGAAACTTG 58.085 36.000 9.46 0.00 0.00 3.16
3085 4056 6.715718 TGGAATTGTATTAACCGGAAACTTGA 59.284 34.615 9.46 0.00 0.00 3.02
3086 4057 7.394923 TGGAATTGTATTAACCGGAAACTTGAT 59.605 33.333 9.46 0.00 0.00 2.57
3087 4058 8.895737 GGAATTGTATTAACCGGAAACTTGATA 58.104 33.333 9.46 0.00 0.00 2.15
3088 4059 9.712359 GAATTGTATTAACCGGAAACTTGATAC 57.288 33.333 9.46 9.36 0.00 2.24
3089 4060 8.795842 ATTGTATTAACCGGAAACTTGATACA 57.204 30.769 9.46 11.96 30.33 2.29
3090 4061 8.795842 TTGTATTAACCGGAAACTTGATACAT 57.204 30.769 9.46 0.00 31.55 2.29
3091 4062 8.203937 TGTATTAACCGGAAACTTGATACATG 57.796 34.615 9.46 0.00 28.53 3.21
3092 4063 7.825270 TGTATTAACCGGAAACTTGATACATGT 59.175 33.333 9.46 2.69 28.53 3.21
3093 4064 6.489127 TTAACCGGAAACTTGATACATGTG 57.511 37.500 9.46 0.00 0.00 3.21
3094 4065 4.015872 ACCGGAAACTTGATACATGTGT 57.984 40.909 9.46 0.10 0.00 3.72
3095 4066 3.751175 ACCGGAAACTTGATACATGTGTG 59.249 43.478 9.46 0.00 0.00 3.82
3096 4067 3.126858 CCGGAAACTTGATACATGTGTGG 59.873 47.826 9.11 0.00 0.00 4.17
3097 4068 4.000325 CGGAAACTTGATACATGTGTGGA 59.000 43.478 9.11 0.00 0.00 4.02
3098 4069 4.635765 CGGAAACTTGATACATGTGTGGAT 59.364 41.667 9.11 0.00 0.00 3.41
3099 4070 5.815222 CGGAAACTTGATACATGTGTGGATA 59.185 40.000 9.11 0.00 0.00 2.59
3100 4071 6.238103 CGGAAACTTGATACATGTGTGGATAC 60.238 42.308 9.11 0.00 0.00 2.24
3118 4089 7.004555 TGGATACATAGACAAAACAGAGTGT 57.995 36.000 0.00 0.00 46.17 3.55
3119 4090 7.097192 TGGATACATAGACAAAACAGAGTGTC 58.903 38.462 0.00 0.00 46.17 3.67
3120 4091 6.535508 GGATACATAGACAAAACAGAGTGTCC 59.464 42.308 0.36 0.00 44.30 4.02
3121 4092 4.642429 ACATAGACAAAACAGAGTGTCCC 58.358 43.478 0.36 0.00 44.30 4.46
3122 4093 4.348168 ACATAGACAAAACAGAGTGTCCCT 59.652 41.667 0.36 0.00 44.30 4.20
3123 4094 5.542635 ACATAGACAAAACAGAGTGTCCCTA 59.457 40.000 0.36 0.00 44.30 3.53
3124 4095 4.608948 AGACAAAACAGAGTGTCCCTAG 57.391 45.455 0.36 0.00 44.30 3.02
3125 4096 3.967987 AGACAAAACAGAGTGTCCCTAGT 59.032 43.478 0.36 0.00 44.30 2.57
3126 4097 5.145564 AGACAAAACAGAGTGTCCCTAGTA 58.854 41.667 0.36 0.00 44.30 1.82
3127 4098 5.601313 AGACAAAACAGAGTGTCCCTAGTAA 59.399 40.000 0.36 0.00 44.30 2.24
3128 4099 5.855045 ACAAAACAGAGTGTCCCTAGTAAG 58.145 41.667 0.00 0.00 0.00 2.34
3129 4100 4.538746 AAACAGAGTGTCCCTAGTAAGC 57.461 45.455 0.00 0.00 0.00 3.09
3130 4101 2.458620 ACAGAGTGTCCCTAGTAAGCC 58.541 52.381 0.00 0.00 0.00 4.35
3131 4102 2.043252 ACAGAGTGTCCCTAGTAAGCCT 59.957 50.000 0.00 0.00 0.00 4.58
3132 4103 2.691011 CAGAGTGTCCCTAGTAAGCCTC 59.309 54.545 0.00 0.00 0.00 4.70
3133 4104 2.583566 AGAGTGTCCCTAGTAAGCCTCT 59.416 50.000 0.00 0.00 0.00 3.69
3134 4105 3.787013 AGAGTGTCCCTAGTAAGCCTCTA 59.213 47.826 0.00 0.00 0.00 2.43
3135 4106 3.884693 GAGTGTCCCTAGTAAGCCTCTAC 59.115 52.174 0.00 0.00 0.00 2.59
3136 4107 3.528491 AGTGTCCCTAGTAAGCCTCTACT 59.472 47.826 0.00 0.00 36.16 2.57
3137 4108 4.725810 AGTGTCCCTAGTAAGCCTCTACTA 59.274 45.833 0.00 0.00 34.03 1.82
3138 4109 5.065235 GTGTCCCTAGTAAGCCTCTACTAG 58.935 50.000 14.24 14.24 45.92 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.056821 GCCATGTAGGTTCTTTTTCACCC 60.057 47.826 0.00 0.00 40.61 4.61
102 110 2.562738 CCCCCTTTCGCAAAAGAATTCT 59.437 45.455 0.88 0.88 43.90 2.40
479 489 4.418359 GGGGTAAAATGGTAAAGTCCCAA 58.582 43.478 0.00 0.00 35.14 4.12
869 885 0.623324 ACTAATGGGGCCTGCCACTA 60.623 55.000 12.41 0.00 40.96 2.74
901 917 9.034800 CGGTTTTAGTATATATGGTACCCCTAA 57.965 37.037 10.07 2.05 0.00 2.69
933 949 5.012148 AGTCAGATTAAGCACCTAACTGTGT 59.988 40.000 0.00 0.00 38.52 3.72
943 959 4.975502 CGATCTCAGAGTCAGATTAAGCAC 59.024 45.833 0.00 0.00 30.30 4.40
1032 1048 4.742201 TCGTCGCAGGCAAGCCTC 62.742 66.667 11.38 5.62 46.28 4.70
1073 1089 3.883549 GCTCCCTGGCCATCTCCC 61.884 72.222 5.51 0.00 0.00 4.30
1169 1185 2.131183 GTATGCTCTCGAACATCTGGC 58.869 52.381 0.00 0.00 0.00 4.85
1219 1235 0.317160 TCGAGCGGAAGAAGCTTCAA 59.683 50.000 27.57 0.00 46.13 2.69
1232 1248 3.182182 TCAACTTGAGAATGATCGAGCG 58.818 45.455 0.00 0.00 0.00 5.03
1314 1330 3.132139 TCCTTCTCTCCGTCGCCG 61.132 66.667 0.00 0.00 0.00 6.46
1317 1333 2.792599 CCGTCCTTCTCTCCGTCG 59.207 66.667 0.00 0.00 0.00 5.12
1405 1421 9.769093 ATTTGGTTTTTCTCGATTATTAACTCG 57.231 29.630 0.00 0.00 36.25 4.18
1410 1426 9.991388 CCGTTATTTGGTTTTTCTCGATTATTA 57.009 29.630 0.00 0.00 0.00 0.98
1426 1442 6.159988 TCAAAGCATTAAACCCGTTATTTGG 58.840 36.000 0.00 0.00 0.00 3.28
1427 1443 6.183360 GCTCAAAGCATTAAACCCGTTATTTG 60.183 38.462 0.00 0.00 41.89 2.32
1428 1444 5.867174 GCTCAAAGCATTAAACCCGTTATTT 59.133 36.000 0.00 0.00 41.89 1.40
1430 1446 4.993905 GCTCAAAGCATTAAACCCGTTAT 58.006 39.130 0.00 0.00 41.89 1.89
1431 1447 4.428615 GCTCAAAGCATTAAACCCGTTA 57.571 40.909 0.00 0.00 41.89 3.18
1432 1448 3.297830 GCTCAAAGCATTAAACCCGTT 57.702 42.857 0.00 0.00 41.89 4.44
1515 1532 4.553330 TTTCTGACCATACTTCCTCCAC 57.447 45.455 0.00 0.00 0.00 4.02
1536 1553 3.243839 GGTGCTTTGTGTGGTTGATGATT 60.244 43.478 0.00 0.00 0.00 2.57
1579 1632 8.888716 TGATGTAATACGCAACAGAAATTATGT 58.111 29.630 0.00 0.00 0.00 2.29
1580 1633 9.373750 CTGATGTAATACGCAACAGAAATTATG 57.626 33.333 0.00 0.00 38.50 1.90
1581 1634 9.325198 TCTGATGTAATACGCAACAGAAATTAT 57.675 29.630 0.00 0.00 40.89 1.28
1582 1635 8.710835 TCTGATGTAATACGCAACAGAAATTA 57.289 30.769 0.00 0.00 40.89 1.40
1583 1636 7.549134 TCTCTGATGTAATACGCAACAGAAATT 59.451 33.333 6.70 0.00 42.39 1.82
1584 1637 7.041721 TCTCTGATGTAATACGCAACAGAAAT 58.958 34.615 6.70 0.00 42.39 2.17
1585 1638 6.394809 TCTCTGATGTAATACGCAACAGAAA 58.605 36.000 6.70 0.00 42.39 2.52
1586 1639 5.961272 TCTCTGATGTAATACGCAACAGAA 58.039 37.500 6.70 0.00 42.39 3.02
1587 1640 5.576447 TCTCTGATGTAATACGCAACAGA 57.424 39.130 0.00 0.00 41.34 3.41
1588 1641 6.834959 AATCTCTGATGTAATACGCAACAG 57.165 37.500 0.00 0.00 37.86 3.16
1589 1642 8.710835 TTTAATCTCTGATGTAATACGCAACA 57.289 30.769 0.00 0.00 0.00 3.33
1592 1645 8.699749 CGATTTTAATCTCTGATGTAATACGCA 58.300 33.333 1.41 0.00 33.24 5.24
1593 1646 8.912658 TCGATTTTAATCTCTGATGTAATACGC 58.087 33.333 1.41 0.00 33.24 4.42
1598 1651 9.935682 GCATTTCGATTTTAATCTCTGATGTAA 57.064 29.630 0.00 0.00 33.24 2.41
1599 1652 9.108284 TGCATTTCGATTTTAATCTCTGATGTA 57.892 29.630 0.00 0.00 33.24 2.29
1600 1653 7.988737 TGCATTTCGATTTTAATCTCTGATGT 58.011 30.769 0.00 0.00 33.24 3.06
1601 1654 8.845942 TTGCATTTCGATTTTAATCTCTGATG 57.154 30.769 0.00 2.39 33.24 3.07
1602 1655 9.859427 TTTTGCATTTCGATTTTAATCTCTGAT 57.141 25.926 0.00 0.00 33.24 2.90
1603 1656 9.689976 TTTTTGCATTTCGATTTTAATCTCTGA 57.310 25.926 0.00 0.00 33.24 3.27
1604 1657 9.947897 CTTTTTGCATTTCGATTTTAATCTCTG 57.052 29.630 0.00 0.00 33.24 3.35
1605 1658 9.912634 TCTTTTTGCATTTCGATTTTAATCTCT 57.087 25.926 0.00 0.00 33.24 3.10
1609 1662 9.862585 GTGTTCTTTTTGCATTTCGATTTTAAT 57.137 25.926 0.00 0.00 0.00 1.40
1610 1663 8.331742 GGTGTTCTTTTTGCATTTCGATTTTAA 58.668 29.630 0.00 0.00 0.00 1.52
1611 1664 7.708752 AGGTGTTCTTTTTGCATTTCGATTTTA 59.291 29.630 0.00 0.00 0.00 1.52
1612 1665 6.538381 AGGTGTTCTTTTTGCATTTCGATTTT 59.462 30.769 0.00 0.00 0.00 1.82
1756 1809 4.471726 GGTCATCGTCGACGCCGT 62.472 66.667 32.19 17.63 39.60 5.68
1925 1978 0.868406 CAACCGAAGAGCAAGTCACC 59.132 55.000 0.00 0.00 0.00 4.02
1941 1994 0.745128 TGGTGGTGGTCAACGACAAC 60.745 55.000 0.00 0.00 39.14 3.32
2080 2136 2.989253 CCCAAGCCGTCCCCAAAC 60.989 66.667 0.00 0.00 0.00 2.93
2098 2154 1.065636 CATGCCCGCTCATATCCATCT 60.066 52.381 0.00 0.00 0.00 2.90
2141 2197 8.111836 TCGACGTGATCCGAATTTTATTTTTAG 58.888 33.333 10.05 0.00 40.70 1.85
2145 2201 5.499652 CGTCGACGTGATCCGAATTTTATTT 60.500 40.000 29.08 0.00 40.70 1.40
2211 2267 8.827177 TTTATGAACGAAGAGAGTATTGTTGT 57.173 30.769 0.00 0.00 0.00 3.32
2258 3229 7.683437 TTCAGTCCGTATATAGTCCATACTG 57.317 40.000 0.00 0.00 36.36 2.74
2268 3239 8.725405 TTTTTGCTCATTTCAGTCCGTATATA 57.275 30.769 0.00 0.00 0.00 0.86
2364 3335 9.901724 CATAACGTCAACATCAATTAAGTACTC 57.098 33.333 0.00 0.00 0.00 2.59
2379 3350 3.063045 GGATTTCGGTCCATAACGTCAAC 59.937 47.826 0.00 0.00 38.20 3.18
2385 3356 4.007659 ACAACTGGATTTCGGTCCATAAC 58.992 43.478 5.73 0.00 46.67 1.89
2480 3451 8.899771 GCCTAGGTGTAATGCTTAAATCTTTTA 58.100 33.333 11.31 0.00 0.00 1.52
2481 3452 7.772166 GCCTAGGTGTAATGCTTAAATCTTTT 58.228 34.615 11.31 0.00 0.00 2.27
2482 3453 7.334844 GCCTAGGTGTAATGCTTAAATCTTT 57.665 36.000 11.31 0.00 0.00 2.52
2483 3454 6.944234 GCCTAGGTGTAATGCTTAAATCTT 57.056 37.500 11.31 0.00 0.00 2.40
2733 3704 0.038159 CGCGTGATCTTAGGATCCCC 60.038 60.000 8.55 2.60 45.62 4.81
2734 3705 0.674534 ACGCGTGATCTTAGGATCCC 59.325 55.000 12.93 0.00 45.62 3.85
2735 3706 2.510768 AACGCGTGATCTTAGGATCC 57.489 50.000 14.98 2.48 45.62 3.36
2736 3707 4.608951 AGTAAACGCGTGATCTTAGGATC 58.391 43.478 14.98 7.87 46.20 3.36
2737 3708 4.650754 AGTAAACGCGTGATCTTAGGAT 57.349 40.909 14.98 0.00 34.45 3.24
2738 3709 4.171005 CAAGTAAACGCGTGATCTTAGGA 58.829 43.478 14.98 0.00 0.00 2.94
2739 3710 3.306166 CCAAGTAAACGCGTGATCTTAGG 59.694 47.826 14.98 15.70 0.00 2.69
2740 3711 4.031426 GTCCAAGTAAACGCGTGATCTTAG 59.969 45.833 14.98 10.70 0.00 2.18
2741 3712 3.922240 GTCCAAGTAAACGCGTGATCTTA 59.078 43.478 14.98 4.47 0.00 2.10
2742 3713 2.735134 GTCCAAGTAAACGCGTGATCTT 59.265 45.455 14.98 14.51 0.00 2.40
2743 3714 2.288579 TGTCCAAGTAAACGCGTGATCT 60.289 45.455 14.98 8.61 0.00 2.75
2744 3715 2.063266 TGTCCAAGTAAACGCGTGATC 58.937 47.619 14.98 6.08 0.00 2.92
2745 3716 2.157834 TGTCCAAGTAAACGCGTGAT 57.842 45.000 14.98 7.95 0.00 3.06
2746 3717 1.795872 CATGTCCAAGTAAACGCGTGA 59.204 47.619 14.98 0.00 0.00 4.35
2747 3718 1.529438 ACATGTCCAAGTAAACGCGTG 59.471 47.619 14.98 0.00 0.00 5.34
2748 3719 1.873698 ACATGTCCAAGTAAACGCGT 58.126 45.000 5.58 5.58 0.00 6.01
2749 3720 2.222729 GCTACATGTCCAAGTAAACGCG 60.223 50.000 3.53 3.53 0.00 6.01
2750 3721 2.739913 TGCTACATGTCCAAGTAAACGC 59.260 45.455 0.00 0.00 0.00 4.84
2751 3722 3.743911 TGTGCTACATGTCCAAGTAAACG 59.256 43.478 0.00 0.00 0.00 3.60
2752 3723 5.880054 ATGTGCTACATGTCCAAGTAAAC 57.120 39.130 0.00 0.00 37.45 2.01
2774 3745 8.465999 CAAATAATGTAGCATTTCCTGTACCAA 58.534 33.333 0.00 0.00 0.00 3.67
2804 3775 6.379988 ACCCACCATATTGAAATCTGGTTTAC 59.620 38.462 9.68 0.00 41.48 2.01
2824 3795 1.076332 GCATCACAGTTCGTACCCAC 58.924 55.000 0.00 0.00 0.00 4.61
2854 3825 4.376146 ACATCCGGTTTCACAATTTTTGG 58.624 39.130 0.00 0.00 34.12 3.28
2928 3899 9.783256 CCCTGTTTATTCTTTCTAATTTAACCG 57.217 33.333 0.00 0.00 0.00 4.44
2946 3917 5.702065 TGCTGGTACAATATCCCTGTTTA 57.298 39.130 0.00 0.00 38.70 2.01
2949 3920 3.748668 GCATGCTGGTACAATATCCCTGT 60.749 47.826 11.37 0.00 38.70 4.00
2956 3927 4.336153 CAGTGATTGCATGCTGGTACAATA 59.664 41.667 20.33 0.00 38.70 1.90
2976 3947 4.349342 CCTCTAGGGCATATTTCCTTCAGT 59.651 45.833 0.00 0.00 34.75 3.41
2977 3948 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
2978 3949 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
2991 3962 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
3050 4021 8.349245 CGGTTAATACAATTCCAGCATGAATAA 58.651 33.333 0.00 0.00 39.69 1.40
3051 4022 7.040755 CCGGTTAATACAATTCCAGCATGAATA 60.041 37.037 0.00 0.00 39.69 1.75
3052 4023 6.239008 CCGGTTAATACAATTCCAGCATGAAT 60.239 38.462 0.00 0.00 39.69 2.57
3053 4024 5.067153 CCGGTTAATACAATTCCAGCATGAA 59.933 40.000 0.00 0.00 39.69 2.57
3054 4025 4.578516 CCGGTTAATACAATTCCAGCATGA 59.421 41.667 0.00 0.00 39.69 3.07
3055 4026 4.578516 TCCGGTTAATACAATTCCAGCATG 59.421 41.667 0.00 0.00 0.00 4.06
3056 4027 4.787551 TCCGGTTAATACAATTCCAGCAT 58.212 39.130 0.00 0.00 0.00 3.79
3057 4028 4.223556 TCCGGTTAATACAATTCCAGCA 57.776 40.909 0.00 0.00 0.00 4.41
3058 4029 5.124936 AGTTTCCGGTTAATACAATTCCAGC 59.875 40.000 0.00 0.00 0.00 4.85
3059 4030 6.753107 AGTTTCCGGTTAATACAATTCCAG 57.247 37.500 0.00 0.00 0.00 3.86
3060 4031 6.715718 TCAAGTTTCCGGTTAATACAATTCCA 59.284 34.615 0.00 0.00 0.00 3.53
3061 4032 7.148355 TCAAGTTTCCGGTTAATACAATTCC 57.852 36.000 0.00 0.00 0.00 3.01
3062 4033 9.712359 GTATCAAGTTTCCGGTTAATACAATTC 57.288 33.333 0.00 0.00 0.00 2.17
3063 4034 9.233649 TGTATCAAGTTTCCGGTTAATACAATT 57.766 29.630 0.00 0.00 0.00 2.32
3064 4035 8.795842 TGTATCAAGTTTCCGGTTAATACAAT 57.204 30.769 0.00 0.00 0.00 2.71
3065 4036 8.670135 CATGTATCAAGTTTCCGGTTAATACAA 58.330 33.333 0.00 0.00 33.52 2.41
3066 4037 7.825270 ACATGTATCAAGTTTCCGGTTAATACA 59.175 33.333 0.00 0.88 34.10 2.29
3067 4038 8.120465 CACATGTATCAAGTTTCCGGTTAATAC 58.880 37.037 0.00 0.00 0.00 1.89
3068 4039 7.825270 ACACATGTATCAAGTTTCCGGTTAATA 59.175 33.333 0.00 0.00 0.00 0.98
3069 4040 6.657541 ACACATGTATCAAGTTTCCGGTTAAT 59.342 34.615 0.00 0.00 0.00 1.40
3070 4041 5.998981 ACACATGTATCAAGTTTCCGGTTAA 59.001 36.000 0.00 0.00 0.00 2.01
3071 4042 5.410132 CACACATGTATCAAGTTTCCGGTTA 59.590 40.000 0.00 0.00 0.00 2.85
3072 4043 4.215399 CACACATGTATCAAGTTTCCGGTT 59.785 41.667 0.00 0.00 0.00 4.44
3073 4044 3.751175 CACACATGTATCAAGTTTCCGGT 59.249 43.478 0.00 0.00 0.00 5.28
3074 4045 3.126858 CCACACATGTATCAAGTTTCCGG 59.873 47.826 0.00 0.00 0.00 5.14
3075 4046 4.000325 TCCACACATGTATCAAGTTTCCG 59.000 43.478 0.00 0.00 0.00 4.30
3076 4047 6.597672 TGTATCCACACATGTATCAAGTTTCC 59.402 38.462 0.00 0.00 0.00 3.13
3077 4048 7.609760 TGTATCCACACATGTATCAAGTTTC 57.390 36.000 0.00 0.00 0.00 2.78
3078 4049 9.330063 CTATGTATCCACACATGTATCAAGTTT 57.670 33.333 0.00 0.00 39.46 2.66
3079 4050 8.704668 TCTATGTATCCACACATGTATCAAGTT 58.295 33.333 0.00 0.00 39.46 2.66
3080 4051 8.144478 GTCTATGTATCCACACATGTATCAAGT 58.856 37.037 0.00 0.00 39.46 3.16
3081 4052 8.143835 TGTCTATGTATCCACACATGTATCAAG 58.856 37.037 0.00 0.00 39.46 3.02
3082 4053 8.017418 TGTCTATGTATCCACACATGTATCAA 57.983 34.615 0.00 0.00 39.46 2.57
3083 4054 7.595819 TGTCTATGTATCCACACATGTATCA 57.404 36.000 0.00 0.00 39.46 2.15
3084 4055 8.887036 TTTGTCTATGTATCCACACATGTATC 57.113 34.615 0.00 0.00 39.46 2.24
3085 4056 9.109393 GTTTTGTCTATGTATCCACACATGTAT 57.891 33.333 0.00 0.00 39.46 2.29
3086 4057 8.097662 TGTTTTGTCTATGTATCCACACATGTA 58.902 33.333 0.00 0.00 39.46 2.29
3087 4058 6.939730 TGTTTTGTCTATGTATCCACACATGT 59.060 34.615 0.00 0.00 39.46 3.21
3088 4059 7.334171 TCTGTTTTGTCTATGTATCCACACATG 59.666 37.037 0.00 0.00 39.46 3.21
3089 4060 7.394016 TCTGTTTTGTCTATGTATCCACACAT 58.606 34.615 0.00 0.00 41.88 3.21
3090 4061 6.764379 TCTGTTTTGTCTATGTATCCACACA 58.236 36.000 0.00 0.00 37.54 3.72
3091 4062 6.874134 ACTCTGTTTTGTCTATGTATCCACAC 59.126 38.462 0.00 0.00 37.54 3.82
3092 4063 6.873605 CACTCTGTTTTGTCTATGTATCCACA 59.126 38.462 0.00 0.00 39.52 4.17
3093 4064 6.874134 ACACTCTGTTTTGTCTATGTATCCAC 59.126 38.462 0.00 0.00 0.00 4.02
3094 4065 7.004555 ACACTCTGTTTTGTCTATGTATCCA 57.995 36.000 0.00 0.00 0.00 3.41
3095 4066 6.535508 GGACACTCTGTTTTGTCTATGTATCC 59.464 42.308 2.04 0.00 41.65 2.59
3096 4067 6.535508 GGGACACTCTGTTTTGTCTATGTATC 59.464 42.308 2.04 0.00 41.65 2.24
3097 4068 6.213600 AGGGACACTCTGTTTTGTCTATGTAT 59.786 38.462 2.04 0.00 41.65 2.29
3098 4069 5.542635 AGGGACACTCTGTTTTGTCTATGTA 59.457 40.000 2.04 0.00 41.65 2.29
3099 4070 4.348168 AGGGACACTCTGTTTTGTCTATGT 59.652 41.667 2.04 0.00 41.65 2.29
3100 4071 4.899502 AGGGACACTCTGTTTTGTCTATG 58.100 43.478 2.04 0.00 41.65 2.23
3101 4072 5.780793 ACTAGGGACACTCTGTTTTGTCTAT 59.219 40.000 0.00 0.00 41.65 1.98
3102 4073 5.145564 ACTAGGGACACTCTGTTTTGTCTA 58.854 41.667 0.00 0.00 41.65 2.59
3103 4074 3.967987 ACTAGGGACACTCTGTTTTGTCT 59.032 43.478 0.00 0.00 41.65 3.41
3104 4075 4.338379 ACTAGGGACACTCTGTTTTGTC 57.662 45.455 0.00 0.00 41.28 3.18
3105 4076 5.742255 GCTTACTAGGGACACTCTGTTTTGT 60.742 44.000 0.00 0.00 0.00 2.83
3106 4077 4.691216 GCTTACTAGGGACACTCTGTTTTG 59.309 45.833 0.00 0.00 0.00 2.44
3107 4078 4.262938 GGCTTACTAGGGACACTCTGTTTT 60.263 45.833 0.00 0.00 0.00 2.43
3108 4079 3.261137 GGCTTACTAGGGACACTCTGTTT 59.739 47.826 0.00 0.00 0.00 2.83
3109 4080 2.832733 GGCTTACTAGGGACACTCTGTT 59.167 50.000 0.00 0.00 0.00 3.16
3110 4081 2.043252 AGGCTTACTAGGGACACTCTGT 59.957 50.000 0.00 0.00 0.00 3.41
3111 4082 2.691011 GAGGCTTACTAGGGACACTCTG 59.309 54.545 0.00 0.00 0.00 3.35
3112 4083 2.583566 AGAGGCTTACTAGGGACACTCT 59.416 50.000 0.00 0.00 0.00 3.24
3113 4084 3.021177 AGAGGCTTACTAGGGACACTC 57.979 52.381 0.00 0.00 0.00 3.51
3114 4085 3.528491 AGTAGAGGCTTACTAGGGACACT 59.472 47.826 7.35 0.00 32.25 3.55
3115 4086 3.900971 AGTAGAGGCTTACTAGGGACAC 58.099 50.000 7.35 0.00 32.25 3.67
3116 4087 4.973856 TCTAGTAGAGGCTTACTAGGGACA 59.026 45.833 26.08 14.79 46.84 4.02
3117 4088 5.072193 AGTCTAGTAGAGGCTTACTAGGGAC 59.928 48.000 26.08 21.45 46.84 4.46
3118 4089 5.226015 AGTCTAGTAGAGGCTTACTAGGGA 58.774 45.833 26.08 15.57 46.84 4.20
3119 4090 5.571791 AGTCTAGTAGAGGCTTACTAGGG 57.428 47.826 26.08 14.30 46.84 3.53
3120 4091 6.168389 GCTAGTCTAGTAGAGGCTTACTAGG 58.832 48.000 26.08 18.07 46.84 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.