>input_sequence_59436
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-------------------------------------------------------ATGAAGCACATCAAGAAAAGCAGCA
GCTCGTCGAGGCTTGCCTGCGACGACGACCGTCCTACGGCGGCGTTGAGGGAGATGGCCAGGGAGCAGTCCCTGGTGACG
CAGCTGCGCGCTGTCGTGCTGCCGGCGATCCAGCTAGCCGGCGGCCAGCGGGCCGAGGTCGTCGGCCAGATGTTCGAGAG
CATACTGGACTGCTCGGCCAAGGCCATAGCCGCGTTGAAGCTTCTTCCGCTCGATCATTCTCAAGTTGATGATGCTGTGC
TGCCGACGGCGATGGTGGACGACAAGACGAGAGTCAGGAAGATCGTCACCGGCGACGGAGAGAAGGACGGCGACGACAAT
GCCAAGCCCCTTCGCCGTCAGCGCAAGAGAAGGTGAGGAGCACTACATATTTGGTTATGTCGAGTTAATAATCGAGAAAA
ACCAAATAAC-GGGTTTAATGCTTTGAGCAGGAGATTAGCCGATGACTCCGTGGCGCTTGAAACGCCTGTTCCTCACTAC
GATGGCCACCAGTGGAGGAAGTATGGTCAGAAAATCATCAACCACACAAAGCACCCTAGGTACATAAG------------
------------------------AGGATACACATAATTTCTGTTGCGTATTACATCAGAGATTAAAATCGAAATGCAAA
AAGAACACCTTCGTGGTACAGGAACTCACTGGTATGGTTTGGGTTAAGCAGGAGTTACTACAAATGCACCTACAAGCAAG
AACAGGACTGCAGAGCAACGAAGACGGTGCAACAGCAGCAACAAGACGACGGCGTCGACGATGACCCTGCCATGTACGCC
GTCGTCTACTACGGTCAACACACCTGCAAGCCCGGCCAGACCGATGCCGCCGTCGTCGAGACGGCAAGCACCGGTAGGTG
CGGTGAAGGCGGGGGAGAGGAGCTTGCCCGGAGCAGCAGCCAGTGCAGCAATATCTCGGTGACTTGCTCTTCGGTTGTCG
TTGACCACCACCAGACGACGACGGCG---TCCCTCGAGAGCAGTTGCAACCTGCTGGACATGGCGGGAGACTTGGCTACT
GCAGAGGTGAACCAGTATGATCAGCTGTTTGATGTGGCTTCGTTTTCGCCGTTGGGTTTGGGGACGGCTTGGGAGATGGA
TATGAGCGGGCATGGGCTCCAAAAGTTTGGAGGCTGCTAA----------------------------------------
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>chr5D_1_TraesCS5D01G145600
CACCCACTGCACACCGGGTGAAAAAGAACCTACATGGCAAAAAGATGAATTTCCACACTTACATACTATAGAATATGGGC
GCAATTATT-------TGCTTGGAACACGAGAATTCTTTTGCGAAAGGGGGA--GGGGCAGGTATCCCCTGGTGGTATCC
ACGGTGTTTGCTCATTCATATAGTACTATTTTATACCGACTGCATTGCTAGTCCAGGCGAAGTCAATGTACTTAGATTTG
GTCTTTGATGTGGTTCGTGGAAAATGGTGGCAAAAGAAGGTGGCCACTGAGCTCGGGCTCACAGTTTAATCCGTCGATCG
ATCAATCGGAAGGAGCAAAGAAGGAACATGTAAACGTGTTAATTACAGTACACTACAGAAATAAGTACACTATGAAATGC
GCGCTATTCCAATTAGTCCACACACGCTTGCAGACTGAGCTCATATATGGATGAAAACGACTTACATTTGGCACGACCGA
TGGCGTCGTTGGGACTTTACCATTTTACCCCGACCTGGAGCATGGCCACATATGGTGGTGACGAGATTGTGGTGACATGA
GATTGCCTCTGCCAGCCTGACGCCACTAACGTGCGTGCATGAGT-GCATATAATTAACTCTTGAGCACGATGGATT-CTG
GCCAGATACTTGCTTAATTTGTTCACAGGGTAACTGGTGAACACAAACGACATTGAC----CATGCACTCATAGAGATGA
AATCAAAACCGTGCTGCCGATGTACTCGATGTGTATGTGTCAGTCGTTTTGTTTAGTTGCCATCTCAATTATCGCATGTG
ATCGATGTCGATCCATCCCCTGACCCCTCTTGCCTACGTCGCATGCAGCTGATTTTATAACTTATAAGGCGCAATTTTAT
GTGCTAGTGGCAGGCCCCATTAGTTTACGCGGTTACTTAGGGGTACCATATATACTAAAACCGTGGACACACAGTTAGGT
GCTTAATCTGACTCTGAGATCGAGGCGAGGCAAGTTAGTTGAGAACTTGAGAAAGATGAAGCACATCAAGAAAAGCAGCA
GCTCGTCGAGGCTTGCCTGCGACGACGACCGTCCTACGGCGGCGTTGAGGGAGATGGCCAGGGAGCAGTCCCTGGTGACG
CAGCTGCGCGCTGTCGTGCTGCCGGCGATCCAGCTAGCCGGCGGCCAGCGGGCCGAGGTCGTCGGCCAGATGTTCGAGAG
CATACTGGACTGCTCGGCCAAGGCCATAGCCGCGTTGAAGCTTCTTCCGCTCGATCATTCTCAAGTTGATGATGCTGTGC
TGCCGACGGCGATGGTGGACGACAAGACGAGAGTCAGGAAGATCGTCACCGGCGACGGAGAGAAGGACGGCGACGACAAT
GCCAAGCCCCTTCGCCGTCAGCGCAAGAGAAGGTGAGGAGCACTACATATTTGGTTATGTCGAGTTAATAATCGAGAAAA
ACCAAATAAC-GGGTTTAATGCTTTGAGCAGGAGATTAGCCGATGACTCCGTGGCGCTTGAAACGCCTGTTCCTCACTAC
GATGGCCACCAGTGGAGGAAGTATGGTCAGAAAATCATCAACCACACAAAGCACCCTAGGTACATAAG------------
------------------------AGGATACACATAATTTCTGTTGCGTATTACATCAGAGATTAAAATCGAAATGCAAA
AAGAACACCTTCGTGGTACAGGAACTCACTGGTATGGTTTGGGTTAAGCAGGAGTTACTACAAATGCACCTACAAGCAAG
AACAGGACTGCAGAGCAACGAAGACGGTGCAACAGCAGCAACAAGACGACGGCGTCGACGATGACCCTGCCATGTACGCC
GTCGTCTACTACGGTCAACACACCTGCAAGCCCGGCCAGACCGATGCCGCCGTCGTCGAGACGGCAAGCACCGGTAGGTG
CGGTGAAGGCGGGGGAGAGGAGCTTGCCCGGAGCAGCAGCCAGTGCAGCAATATCTCGGTGACTTGCTCTTCGGTTGTCG
TTGACCACCACCAGACGACGACGGCG---TCCCTCGAGAGCAGTTGCAACCTGCTGGACATGGCGGGAGACTTGGCTACT
GCAGAGGTGAACCAGTATGATCAGCTGTTTGATGTGGCTTCGTTTTCGCCGTTGGGTTTGGGGACGGCTTGGGAGATGGA
TATGAGCGGGCATGGGCTCCAAAAGTTTGGAGGCTGCTAAAAATAAAATTCGGATCACGTCGACGGATGAGTTAAAAACA
TGTTATGTAAGCGTATTTTTTTATCAACAACAATACTCTCTTCGTTCATAAATATAAGATGGTTTGAA------------
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-----------------------TATTTCAGTATGGACTATATACGGACTGAAATGAGCAAAAAAACACATGAAAACGTG
TCTATATACATTTGATTTCAAAAAAATAGAACATCTTATATTTATGAACGGAGGGAGTACTTAATTGATGTTGACGTTAT
GGACCGAAATCCAGTTGTTCAAAGAACATTATATATGTAAAGAAAAAGTGTTTCATGCATTTTTTTTTTGAAAAGAAAAG
CTTTATTACTTAAAAGATTTAAGCATTACACCTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGGGATCCTAAGATCACGCGTTTACTTGGACATGTAGCACATTGGTACAGGAAATGC
TACATTATTTGTAAGTAAACCAGATTTCAATATGGTGGGTACGAACTGTGATGCTGTTATTTTTCCAAAAATTGTGAAAC
CGGATGTTAATAAATAATATGGATGCAATCCAGCACAAACAACCAATCAATCACCCAACGGTTAAATTAGAAAGAATAAA
CAGGGATATTGTACCAGCATGCAATCACTGAAGGAAATATGCCCTAGAGGCAATAATAAAGTTGTTATTTTATATTTCCT
TATATCACGATAAATTTTTATTATTCATGCTGGAATTGTATTAACCGGAAACTTGATACATGTGTGGATACATAGACAAA
ACAGAGTGTCCCTAGTAAGCCTCTACTAGACTAGC
>chr5A_1
CACCCACTGCACACCAGGTGAAAAAGAACCTA----GCAAAAAGATGAATTTCCACACTTGCATACTA--GAATATGGGC
ACAATTATTTAGCCCCTGCTTGGAACACGCGAATTCTTTTGCGAAAGGGGGA--GGGGCAGGTATCCCCTGGTGGTATCC
ACGGTGTTTGCTCATTCATATAGTACTATTTTATACCGACTGCATTGCTAGTCCAGGCGAAGTCAATGTACTTAGATTTG
GTCGTTGTTGTGGTTCATGGAAAATTGTGGCAAAAGAAGGTGGCCACTGAGCTCGGGCTCACAGTTTAATCCGTCGATCG
ATCAATCGGAAGGAGCAAAGAAGGACCATGTAAACGTGTTAATTACAGTACACTACAGAAATAAGTACACTATGCAATGC
GCGCTATTCCAATTAGTCCACACACGCTTGCAGACCGAGCTCATATATGGATGAAAACGACTTACATTTGGCACGACCGA
TGGCGTCGATGGGACTTTACCATTTTACCCCGACCTGGAGCATGGCCACATATGGTGGTGACGAGGTCGTGGTGACATGA
GATTGCCTCTGCCAGCCTGACGCCACTAACGTGCGTGCATGAGT-GCGTATAATTAACTCTTGAGCACGATGGATTACTG
GCCAGATACTTGCTTAATTTGTTCACAGGGTAACTGGTGAACACAAACGACATTGACCATGCATGCACTCATAGAGATGA
AATCAAAACCTAGCTGCCGATGTACTCGATGTGTATGTGTCAGTCGTTTTGTTTAGTTGCCATCTCAATTATCGCATGTG
CTCGATGCCGATCCATCCCCTGACCCCTCTTGCCTACGTCGCATGCAGCTGATTTTATAACTTATAAGGCGCAATTTTAT
GTGCAAGTGGCAGGCCCCATTAGTTTACGCGGTTACATAGGGGTACCATATATACTAAAACCGTGGACGCACAGTTAGCT
GCTTAATCTGACTCTGAGATCGAGGCGAGGAAAGTTAGTTGAGAACTTGAGAGAGATGAAGCACATCAAGAAAAGCAGCA
GCTCGTCCAGGCTTGTCTGCGGCGACGACCGTTCGGCGGCGGCGTTGAAGGAGATGGCCAGGGAGCAGTCCCTGGTGACG
CAGCTGCGCGCTGTCGTGCTGCCGGCGATCCAGCTAGCCGGCGGCGAGCGCGCCGAGGTCGTCGCCCAGATGTTCGAGAG
CATACTGGACTGCTCGGCCAAGGCCATAGCCACGCTGAAGCTTCTTCGTCTCGATCATTCTCAAGTTGATGATGCGGTGC
TGCCGACGGCGATGGTGGACGACAAGACGAGAGTCACGAAGATCGTCACTGGTGACGGAGAGAAGGACAGCGACGACAAT
GCCAAGCCCCTTCGCCGTCAGCGCAAGAGAAGGTGAGGAGCACTGCATATTTGGGTATGTTG----AATAATCGAGAAAA
AAACAGCTAATGGTTTTTATGCTGTGAGCAGGAGATTAGCCGATGACTCCGTGGCGCTTGAAACGCCTGTTCCTCACTAC
GATGGCCACCAATGGAGGAAGTATGGTCAGAAGATCATCAACCACACAAAGCATCCAAGGTATACAAGTAGATATACGCA
TAATTTTTGTTGCGTATACATCAAAGATCAC----------------------------------AAATGGAAATGCAAA
AAGAATACCTTCGTGGTACAACAACTCACTGGCGTGGTTTTGGTTGAGCAGGAGTTACTACAAATGCACCTACAAGCAAG
AACAGGACTGCAGAGCAACGAAGACGGTGCAACAGCAGCAACAAGACGCCGGCGTCGACGATGACCCCGCCATGTACGCC
GTCGTCTACTACGGTCAACACACCTGCAAGCCCGGCCAGACCGATGCTGCCGTCGTCGAGACAGCAAGCACCGGTAGGTG
CGGTGAAGGCGGGGGAGAGGAGCATGCACGGAGCAACAGCCAGTGCAGCAATATCTCAGTGACTTGCTCTTCGATTGTCG
TTGACCACCACCAGACGACGACGGCGGCGTCCCTCGAGAGCAGTTGCAACCTGCTCGACATGGCGGGAGACTTGGCTACT
CCAGAGGTGAACCAGTATGATCAGCTGTTTGACGTGGATTCGTTTTCGCCGTTGGATTTGGGGACGGCCTGGGCGACGGA
TGTGAGCGGGCATGGGCTCCAAAAGTTTGGAGGCTGGTAATAATAAAATTCTGATCACGTCCATGGATGAGTTAAA----
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>chr5B_1
CACCCAATGCACGCCAGGTGAAAAAGAACCTACATGGCAAAAAGATGAATTTCCACACTTACATACTATAGTACTA----
---------TAGCCCCTGCTTGGAACACGCGAATTCTTTTGCGAAAGGGGGAGGGGGGCAGGTATCCCATGGTGCTATCC
ACGGTGTTTGCTCCTTCATATAGTACTATTCTATACCGACTT-ATTGCTAGTCCTGGCGTAGTCAATGTACTTAGATTTG
GTCTTTGATGTGGTTCGTGGAAAATGGTGGCAAAAGAAGGTGGCCACTGAGCTCGGGCTCGCAGTTTAATCCGTTGATCG
ATCAATCGGAAGGAGGAAAGAAGGAACATGTAAACGTGTTAATTACAGTACACTACAGAAATAAGTACACTATGAAATGC
GCGCTATTCCAATTAGTCCACACACGCTTGCAGACTGAGCTCATATATGGATGAAAACGACTTACATTTGGCACGACCGA
GGGCGCCGATGGGACTTTACCATTTTACCCCGACCTGGAGCATGGCCACATATGATGGTGACGAGATTGTGGTGACATGA
GATTGCCTCTGCCAGCCTGACGCCACTAACGTGCGTGCATGAGGCGCATATAATTAACTCTTGAGCACGATGGATTACTG
GCCAGATACTTGCTTAATTTGTTCACAGGGTAACTGGTGAACACAAACGACATTGAC----CATGCACTCATAGAGATCA
AATCAAAACCGTGCTGCCGATGTACCCGATGTGTATGTGTCAGTCGTTTTGTCCAGTTGCCATCTGAATTATCGCATGTG
CTCGATGTCGATCCATCCCCTGACCCCTCTTGCCTACGTCGCATGCAGCTGATTTTATAACTTATAAGGAGCAATTTTAT
GTGCAAGTGGCAGGCCCCATTAGTTTACGCGGTTACATAGGGGTACTATATATACT-AAACCGTGGACGCACAGTTAGAT
GCTTAATCTGACTCTGAGATCGAGGCGAGGAAAGTTAGTTGAGAACTTGAGAGAGATGAAGCACATCAAGAAAAGCAGCA
GCTCGTCCAGGCTTGTCTGCGATGACAACCGTTCGGCGGCGGCGTTGAAGGAGATGGCCAGGGAGCAATCCCTGGTGACG
CAGCTGCGCGCTGTCGTGCTGCCGGCGATCCAGCTAGCCGGCGGCGAGCGCGCCGAGGTCGTCGCCCAGATGTTCGAGAG
CATACTGGACTGCTCGGCCAAGGCCATAGCCGCGCTGAAGCTTCTTCGGCTCGATCATTCTCAAGTTGATGATGCAGTGC
TGCCGACGGCGATGGTGGACGACAAGACGAGAGTCAGGAAGATCGTCACAGGTGACGGAGAGAAGGACGGCAACGATAAT
GCCAAGCCCCTTCGCCGTCAGCGCAAGAGAAGGTGAGGAGCACTGCATATTTGAGTATGTTG----AATAATCGAGAAAA
AAACAGCTAATGGTTTTAATGCTTTGAGCAGGAGATTAGCCGATGACTCCGTGGCGCTTGAAACGCCTGTTCCTCACTAC
GATGGCCACCAATGGAGGAAGTATGGCCAGAAGATCATCAACCACACAAAGCACCCTAGGTACATGAG------------
------------------------AGATTAC----------------------------------AAATCGAAATGCAAA
AAGAATACCTTCGTGGTACAGGAACTCACTGGTATGGTTTGGGTTAAGCAGGAGTTACTACAAATGCACCTACAAGCAAG
AACAGGACTGTAGAGCAACGAAGACGGTGCAACAGCAGCAACAAGACGCCGGCGTCGACGATGACCCCGCCATGTACACC
GTCGTCTACTACGGTCAACACACCTGCAAGCCCGGCCAGACCGATGCTGCCGTCGTCGAGACGGCAAGCACCGGTAGGTG
CGGTGAAGGCGGGGGAGAGGAGCTTGCACGGAGCAACAGCCAGTGTAGCAATATCTCAGTGACTTGCTCTTCGATTATCG
TTGACCACCACCAGACGGCGA---CGGCGTCCCTCGAGAGCAGTTGCAACCTGCTGGACATGGCGGGAGACTTGGCTACT
GCAGAGGTGAACCAGTATGATCAGCTGTTTGACGTGGCTTCGTTTTCGCCGTTGGATTTGGGGACGGCTTGGGCGATAGA
TGTAAGCGGGCATGGGCTCCAAAAGTTTGGAGGCTGGTAAGAATACTATTCGGGTCACGTCGATGGATGAGTTAAAAAAA
TGTTATGTAAGCATATTTTTTTATCA-CAACAAGTCTCTCTTCGTTCATAAATATAAGATGTTTGGAATCTATTATATCA
CTAAGCTCCCTAGGGGTAAAAGGGCTCATAATCAATTGAGGTGTTAAATTGAAATTGGGTCACCCAATTTTGGCCAAGTT
AACAATTTCTCAAAGATCTCACTCAATTCTTTACACTATGCTTCCTAATTTTTAAGTCCACACAATTAATTGAGGTATTC
GGTTTAGAACTTGATCACCTGATTTTGATCGGGTCAATAATTTCTCATGGAGCCCTCCCATTTAATTATTTCAATTCACC
ATATTTCTTGATTTTGAAGCTCTTTTATTCGATTGAGATATTCAATTTTGAATTTGGTTTACTATTTTGATCGCGTCAAC
GATTTTTCAAATCAATCAACACCAACCGATCTAGAAAAATATATCAACCCCGTGCATCCTCTTACCATCTAGAAAAAAGA
AGCTTCGCTATGTGATGATACTATAGCACCAATATAGTACATGTAGCCACCGACACAGAAATTTACTCACAAAAGTATGA
GTTGATTAGCGGATAACACAAAATCAGACCATAAAAGGCCTACAAATAACCATATTATAAATAGACATAAAACACCCCAT
CGTCTCCCCCCATCCGCCAAACTAAATATTCCATCGATTTCAAAATACAAGGGGTATTAGTTCTTTTTGGAAAGTCAAAT
TTCTTTAACTTTGACCAAGATTAGAGCCAAAAATATCGCATCCATAATATTAAGCCAAAAATTTATGGAAATTCATTTCA
TGATGAATCTAATAACACAAATTCGATATTGCGACTTTTGATATATTTCTTCATAAATTTCATGAAACTTAAAGAGGTTG
GGCTTTTCAAAAGAGTAATACACTTTATTTATACAACAAAATGAGTATTTTTAAGAATCTCAACAACACCAATGGCGCAA
CAAAGCGCGCCCAACCCTTCTAGTATTTTAGTATGGACCATATACAGACTGAAATGAGTGAGGAAACACATTAAAATGTG
TCTATATACATCTGATTTCAAAAAAATAGAACATCTTATATTTATGAACGGAGGCAGTACTTAATTGATCTTGACATTAT
GGACCGGAAACCATTTGTCCACAGAACATTATATATGCAAAGAAAAAGTGTTTCACGAA---------------------
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-------------------------------------------TTTACTTGGACATGTAGCACACTGGTACAGGAAATGC
TACATTATTTGTAAATAAACCAGATTTCAATATGATGGGTACGAACTGTGATGCAGTTATTTTTTCAAAAGTTACGAAAC
CGGATGTTAATAAAATTTATGGATGCAATCCAGCACAAACAACCCATCAATCACTCAAAGGCTAAATTAGAAAGAAAAAG
CAGGGACATTGTACCAGCATGCAATC------------------------------------------------------
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>SNPs
---------------S----------------------------------------------------------------
S----------------------------S--------------------------------------------------
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--------S-----------------------------------------------------------------------
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S-------------------------------------------------------------------------------
----S-------------------------------S-------------------------------S---------S-
------------------------------S---------------------S---------------------------
-------S-------S----------------S-SS------------S-------------------------------
---------------------------------------------S----S-------------S---------------
----------------------------------S------------S---------------------------S----
-------------------------------------------------S--S---------------------------
--------------------------------------------S---------S-----S-SSSS--------------
-SSS-SSS-S---S------------------------------------------------------------------
-----------S--------------------S-----------------------------------------------
--------------------------SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-----S--------------------------------------------------------------------------
------------------------------------------------S------------------S------------
-----------------------------------------------S--------------------------------
---------------------------S-------S---------------------S---------------S------
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--------------------------------S----------------------S-----------------S------
-S----------------------------------S---S----------------------S--------------S-
------------S-------------S------SS--------------------------S--S---------------
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----------------------------S---------S------S------------SS-SS--------S----S---
-----------S------------------------------------------S--------------S-----S----
------S--S---S----S--S---------------S-----------------S-S-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S---------------
--------------S-------------------S-------------------S---------S-----S--SS-----
--------------SSS---------------------------S---------S---S--S--------------S--S
------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_959
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----------------------------------------------------------AACCGTGGACACACAGTTAGG-
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>reverse_3704
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-----------------------GGGGATCCTAAGATCACGCG-------------------------------------
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