Multiple sequence alignment - TraesCS5D01G145400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G145400 chr5D 100.000 2966 0 0 1 2966 232137940 232134975 0.000000e+00 5478.0
1 TraesCS5D01G145400 chr5D 81.319 819 133 17 2100 2910 207349242 207348436 0.000000e+00 647.0
2 TraesCS5D01G145400 chr5D 81.923 780 126 11 2100 2875 363323375 363324143 0.000000e+00 645.0
3 TraesCS5D01G145400 chr5B 88.176 2292 185 39 703 2966 273141029 273143262 0.000000e+00 2652.0
4 TraesCS5D01G145400 chr5B 82.377 732 121 7 2238 2963 619857317 619858046 5.400000e-177 630.0
5 TraesCS5D01G145400 chr5B 97.222 36 1 0 451 486 596835658 596835623 8.880000e-06 62.1
6 TraesCS5D01G145400 chr5A 92.143 1120 43 13 1096 2174 324075653 324076768 0.000000e+00 1539.0
7 TraesCS5D01G145400 chr5A 91.049 324 14 5 707 1028 324075329 324075639 9.830000e-115 424.0
8 TraesCS5D01G145400 chr5A 80.363 331 43 20 1 318 324074496 324074817 6.390000e-57 231.0
9 TraesCS5D01G145400 chrUn 80.114 875 154 18 2100 2966 24687263 24686401 4.170000e-178 634.0
10 TraesCS5D01G145400 chrUn 91.304 46 1 3 442 485 23280616 23280572 3.190000e-05 60.2
11 TraesCS5D01G145400 chr6A 79.954 868 161 10 2108 2966 376930195 376931058 6.980000e-176 627.0
12 TraesCS5D01G145400 chr7D 79.705 882 158 17 2098 2966 412676998 412677871 4.200000e-173 617.0
13 TraesCS5D01G145400 chr2D 79.832 833 145 18 2101 2920 306490749 306491571 1.180000e-163 586.0
14 TraesCS5D01G145400 chr2D 90.588 85 3 1 456 540 612938837 612938916 1.120000e-19 108.0
15 TraesCS5D01G145400 chr2D 92.537 67 4 1 478 543 52026570 52026504 8.750000e-16 95.3
16 TraesCS5D01G145400 chr2D 91.429 70 5 1 474 542 105193318 105193387 8.750000e-16 95.3
17 TraesCS5D01G145400 chr1D 79.572 842 148 19 2092 2920 377794960 377795790 5.510000e-162 580.0
18 TraesCS5D01G145400 chr6D 78.912 882 158 24 2101 2965 187256072 187256942 9.220000e-160 573.0
19 TraesCS5D01G145400 chr2B 92.308 91 7 0 451 541 79676091 79676181 2.400000e-26 130.0
20 TraesCS5D01G145400 chr4D 92.857 70 4 1 481 550 343897815 343897747 1.880000e-17 100.0
21 TraesCS5D01G145400 chr4D 87.805 82 5 4 486 567 30403406 30403482 1.130000e-14 91.6
22 TraesCS5D01G145400 chr3B 93.750 64 4 0 479 542 284421997 284421934 2.430000e-16 97.1
23 TraesCS5D01G145400 chr3B 97.222 36 1 0 451 486 512422239 512422274 8.880000e-06 62.1
24 TraesCS5D01G145400 chr7B 90.278 72 5 2 474 543 714098294 714098365 3.150000e-15 93.5
25 TraesCS5D01G145400 chr1B 89.189 74 7 1 481 553 683748018 683747945 1.130000e-14 91.6
26 TraesCS5D01G145400 chr3D 100.000 30 0 0 451 480 8686557 8686586 4.130000e-04 56.5
27 TraesCS5D01G145400 chr2A 96.875 32 1 0 454 485 709734289 709734258 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G145400 chr5D 232134975 232137940 2965 True 5478.000000 5478 100.000000 1 2966 1 chr5D.!!$R2 2965
1 TraesCS5D01G145400 chr5D 207348436 207349242 806 True 647.000000 647 81.319000 2100 2910 1 chr5D.!!$R1 810
2 TraesCS5D01G145400 chr5D 363323375 363324143 768 False 645.000000 645 81.923000 2100 2875 1 chr5D.!!$F1 775
3 TraesCS5D01G145400 chr5B 273141029 273143262 2233 False 2652.000000 2652 88.176000 703 2966 1 chr5B.!!$F1 2263
4 TraesCS5D01G145400 chr5B 619857317 619858046 729 False 630.000000 630 82.377000 2238 2963 1 chr5B.!!$F2 725
5 TraesCS5D01G145400 chr5A 324074496 324076768 2272 False 731.333333 1539 87.851667 1 2174 3 chr5A.!!$F1 2173
6 TraesCS5D01G145400 chrUn 24686401 24687263 862 True 634.000000 634 80.114000 2100 2966 1 chrUn.!!$R2 866
7 TraesCS5D01G145400 chr6A 376930195 376931058 863 False 627.000000 627 79.954000 2108 2966 1 chr6A.!!$F1 858
8 TraesCS5D01G145400 chr7D 412676998 412677871 873 False 617.000000 617 79.705000 2098 2966 1 chr7D.!!$F1 868
9 TraesCS5D01G145400 chr2D 306490749 306491571 822 False 586.000000 586 79.832000 2101 2920 1 chr2D.!!$F2 819
10 TraesCS5D01G145400 chr1D 377794960 377795790 830 False 580.000000 580 79.572000 2092 2920 1 chr1D.!!$F1 828
11 TraesCS5D01G145400 chr6D 187256072 187256942 870 False 573.000000 573 78.912000 2101 2965 1 chr6D.!!$F1 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 257 0.029567 CGTGCTCGCTAACCCTCTAG 59.970 60.0 0.0 0.0 0.00 2.43 F
355 667 0.033109 AGGAGCAAATAACAGCCCCC 60.033 55.0 0.0 0.0 27.21 5.40 F
356 668 0.033109 GGAGCAAATAACAGCCCCCT 60.033 55.0 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1655 0.040958 GCCTGCACGTTGAAGAACTG 60.041 55.0 0.00 0.00 0.00 3.16 R
1611 1961 0.108329 CGTACTGCGACCCCTTGATT 60.108 55.0 0.00 0.00 44.77 2.57 R
2040 2423 0.327259 AAAGGACCGGTAAGGCTTCC 59.673 55.0 7.34 1.66 46.52 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 40 7.079182 AGAGAACGAAGATAAGAGTACAGTG 57.921 40.000 0.00 0.00 0.00 3.66
51 54 5.127356 AGAGTACAGTGGTAGCTTAACATCC 59.873 44.000 0.00 0.00 0.00 3.51
52 55 4.775780 AGTACAGTGGTAGCTTAACATCCA 59.224 41.667 0.00 0.00 0.00 3.41
54 57 5.179452 ACAGTGGTAGCTTAACATCCATT 57.821 39.130 0.00 0.00 0.00 3.16
55 58 6.308015 ACAGTGGTAGCTTAACATCCATTA 57.692 37.500 0.00 0.00 0.00 1.90
56 59 6.349300 ACAGTGGTAGCTTAACATCCATTAG 58.651 40.000 0.00 0.00 0.00 1.73
57 60 5.237344 CAGTGGTAGCTTAACATCCATTAGC 59.763 44.000 0.00 0.00 0.00 3.09
58 61 5.131142 AGTGGTAGCTTAACATCCATTAGCT 59.869 40.000 0.00 0.00 35.24 3.32
59 62 5.467063 GTGGTAGCTTAACATCCATTAGCTC 59.533 44.000 0.00 0.00 33.02 4.09
60 63 5.366768 TGGTAGCTTAACATCCATTAGCTCT 59.633 40.000 0.00 0.00 33.02 4.09
61 64 6.553476 TGGTAGCTTAACATCCATTAGCTCTA 59.447 38.462 0.00 0.00 33.02 2.43
62 65 7.070696 TGGTAGCTTAACATCCATTAGCTCTAA 59.929 37.037 0.00 0.00 33.02 2.10
65 68 8.807948 AGCTTAACATCCATTAGCTCTAAAAA 57.192 30.769 0.00 0.00 0.00 1.94
66 69 8.897752 AGCTTAACATCCATTAGCTCTAAAAAG 58.102 33.333 0.00 0.00 0.00 2.27
67 70 7.645735 GCTTAACATCCATTAGCTCTAAAAAGC 59.354 37.037 0.00 0.00 42.82 3.51
68 71 8.574251 TTAACATCCATTAGCTCTAAAAAGCA 57.426 30.769 0.00 0.00 45.00 3.91
69 72 6.690194 ACATCCATTAGCTCTAAAAAGCAG 57.310 37.500 0.00 0.00 45.00 4.24
70 73 5.067023 ACATCCATTAGCTCTAAAAAGCAGC 59.933 40.000 0.00 0.00 45.00 5.25
74 81 7.735917 TCCATTAGCTCTAAAAAGCAGCTATA 58.264 34.615 0.00 0.00 43.60 1.31
100 107 6.743575 AATAATTGCAGACCAGTACTTGAC 57.256 37.500 0.08 0.00 0.00 3.18
114 121 6.231211 CAGTACTTGACATTAGAAAGGGTGT 58.769 40.000 0.00 0.00 0.00 4.16
152 159 1.870055 TTGTAGAGGCCACGTCCGAC 61.870 60.000 5.01 0.00 0.00 4.79
168 175 1.339055 CCGACTTTGATTGCAGGGAGA 60.339 52.381 0.00 0.00 0.00 3.71
170 177 2.354103 CGACTTTGATTGCAGGGAGAGA 60.354 50.000 0.00 0.00 0.00 3.10
171 178 3.269178 GACTTTGATTGCAGGGAGAGAG 58.731 50.000 0.00 0.00 0.00 3.20
172 179 2.015587 CTTTGATTGCAGGGAGAGAGC 58.984 52.381 0.00 0.00 0.00 4.09
177 184 4.200283 GCAGGGAGAGAGCGGACG 62.200 72.222 0.00 0.00 0.00 4.79
178 185 2.752238 CAGGGAGAGAGCGGACGT 60.752 66.667 0.00 0.00 0.00 4.34
191 198 2.048498 GCGGACGTTCCAACAAATTTC 58.952 47.619 0.00 0.00 35.91 2.17
196 203 4.542735 GACGTTCCAACAAATTTCGGAAT 58.457 39.130 13.60 2.84 39.60 3.01
203 210 4.093261 CCAACAAATTTCGGAATGGAATGC 59.907 41.667 0.00 0.00 0.00 3.56
204 211 3.510719 ACAAATTTCGGAATGGAATGCG 58.489 40.909 0.00 0.00 35.27 4.73
205 212 3.056891 ACAAATTTCGGAATGGAATGCGT 60.057 39.130 0.00 0.00 35.49 5.24
206 213 3.420839 AATTTCGGAATGGAATGCGTC 57.579 42.857 0.00 0.00 35.49 5.19
220 227 4.436998 CGTCCCAGCGACCTGTCC 62.437 72.222 0.00 0.00 38.36 4.02
229 236 4.436998 GACCTGTCCCCGTGCTCG 62.437 72.222 0.14 0.14 0.00 5.03
241 257 0.029567 CGTGCTCGCTAACCCTCTAG 59.970 60.000 0.00 0.00 0.00 2.43
249 265 2.290093 CGCTAACCCTCTAGACCTTACG 59.710 54.545 0.00 0.00 0.00 3.18
254 270 1.405821 CCCTCTAGACCTTACGCTGTG 59.594 57.143 0.00 0.00 0.00 3.66
255 271 2.093106 CCTCTAGACCTTACGCTGTGT 58.907 52.381 0.00 0.00 0.00 3.72
260 276 2.261671 CCTTACGCTGTGTCCGCT 59.738 61.111 0.00 0.00 0.00 5.52
263 279 0.438830 CTTACGCTGTGTCCGCTTTC 59.561 55.000 0.00 0.00 0.00 2.62
271 496 0.788391 GTGTCCGCTTTCTTGTACGG 59.212 55.000 0.00 0.00 46.97 4.02
319 631 4.187694 GCAGAAAGATGCTAGCAAGTAGT 58.812 43.478 23.54 4.08 43.07 2.73
320 632 5.105351 TGCAGAAAGATGCTAGCAAGTAGTA 60.105 40.000 23.54 5.12 46.63 1.82
321 633 5.461737 GCAGAAAGATGCTAGCAAGTAGTAG 59.538 44.000 23.54 11.17 43.07 2.57
322 634 6.568869 CAGAAAGATGCTAGCAAGTAGTAGT 58.431 40.000 23.54 1.41 0.00 2.73
323 635 7.682261 GCAGAAAGATGCTAGCAAGTAGTAGTA 60.682 40.741 23.54 0.00 43.07 1.82
324 636 7.646130 CAGAAAGATGCTAGCAAGTAGTAGTAC 59.354 40.741 23.54 0.00 0.00 2.73
325 637 5.676532 AGATGCTAGCAAGTAGTAGTACG 57.323 43.478 23.54 0.00 33.97 3.67
326 638 3.687572 TGCTAGCAAGTAGTAGTACGC 57.312 47.619 16.84 1.30 33.97 4.42
327 639 3.011818 TGCTAGCAAGTAGTAGTACGCA 58.988 45.455 16.84 6.14 33.97 5.24
328 640 3.064958 TGCTAGCAAGTAGTAGTACGCAG 59.935 47.826 16.84 6.56 33.97 5.18
330 642 4.272018 GCTAGCAAGTAGTAGTACGCAGTA 59.728 45.833 10.63 0.00 45.11 2.74
342 654 2.543777 ACGCAGTAAAAAGAGGAGCA 57.456 45.000 0.00 0.00 41.94 4.26
343 655 2.846193 ACGCAGTAAAAAGAGGAGCAA 58.154 42.857 0.00 0.00 41.94 3.91
344 656 3.211045 ACGCAGTAAAAAGAGGAGCAAA 58.789 40.909 0.00 0.00 41.94 3.68
345 657 3.821033 ACGCAGTAAAAAGAGGAGCAAAT 59.179 39.130 0.00 0.00 41.94 2.32
346 658 5.001232 ACGCAGTAAAAAGAGGAGCAAATA 58.999 37.500 0.00 0.00 41.94 1.40
347 659 5.472137 ACGCAGTAAAAAGAGGAGCAAATAA 59.528 36.000 0.00 0.00 41.94 1.40
348 660 5.795441 CGCAGTAAAAAGAGGAGCAAATAAC 59.205 40.000 0.00 0.00 0.00 1.89
349 661 6.567701 CGCAGTAAAAAGAGGAGCAAATAACA 60.568 38.462 0.00 0.00 0.00 2.41
350 662 6.803807 GCAGTAAAAAGAGGAGCAAATAACAG 59.196 38.462 0.00 0.00 0.00 3.16
351 663 6.803807 CAGTAAAAAGAGGAGCAAATAACAGC 59.196 38.462 0.00 0.00 0.00 4.40
352 664 4.790765 AAAAGAGGAGCAAATAACAGCC 57.209 40.909 0.00 0.00 0.00 4.85
353 665 2.426842 AGAGGAGCAAATAACAGCCC 57.573 50.000 0.00 0.00 0.00 5.19
354 666 1.064389 AGAGGAGCAAATAACAGCCCC 60.064 52.381 0.00 0.00 0.00 5.80
355 667 0.033109 AGGAGCAAATAACAGCCCCC 60.033 55.000 0.00 0.00 27.21 5.40
356 668 0.033109 GGAGCAAATAACAGCCCCCT 60.033 55.000 0.00 0.00 0.00 4.79
357 669 1.393603 GAGCAAATAACAGCCCCCTC 58.606 55.000 0.00 0.00 0.00 4.30
358 670 0.704076 AGCAAATAACAGCCCCCTCA 59.296 50.000 0.00 0.00 0.00 3.86
359 671 1.077005 AGCAAATAACAGCCCCCTCAA 59.923 47.619 0.00 0.00 0.00 3.02
360 672 1.899142 GCAAATAACAGCCCCCTCAAA 59.101 47.619 0.00 0.00 0.00 2.69
361 673 2.094026 GCAAATAACAGCCCCCTCAAAG 60.094 50.000 0.00 0.00 0.00 2.77
362 674 1.852633 AATAACAGCCCCCTCAAAGC 58.147 50.000 0.00 0.00 0.00 3.51
363 675 1.002857 ATAACAGCCCCCTCAAAGCT 58.997 50.000 0.00 0.00 37.32 3.74
364 676 0.777446 TAACAGCCCCCTCAAAGCTT 59.223 50.000 0.00 0.00 33.70 3.74
365 677 0.777446 AACAGCCCCCTCAAAGCTTA 59.223 50.000 0.00 0.00 33.70 3.09
366 678 1.002857 ACAGCCCCCTCAAAGCTTAT 58.997 50.000 0.00 0.00 33.70 1.73
367 679 1.064389 ACAGCCCCCTCAAAGCTTATC 60.064 52.381 0.00 0.00 33.70 1.75
368 680 1.213926 CAGCCCCCTCAAAGCTTATCT 59.786 52.381 0.00 0.00 33.70 1.98
369 681 1.492599 AGCCCCCTCAAAGCTTATCTC 59.507 52.381 0.00 0.00 31.27 2.75
370 682 1.212935 GCCCCCTCAAAGCTTATCTCA 59.787 52.381 0.00 0.00 0.00 3.27
371 683 2.357154 GCCCCCTCAAAGCTTATCTCAA 60.357 50.000 0.00 0.00 0.00 3.02
372 684 3.877735 GCCCCCTCAAAGCTTATCTCAAA 60.878 47.826 0.00 0.00 0.00 2.69
373 685 4.344104 CCCCCTCAAAGCTTATCTCAAAA 58.656 43.478 0.00 0.00 0.00 2.44
374 686 4.400567 CCCCCTCAAAGCTTATCTCAAAAG 59.599 45.833 0.00 0.00 0.00 2.27
375 687 4.400567 CCCCTCAAAGCTTATCTCAAAAGG 59.599 45.833 0.00 0.00 0.00 3.11
376 688 5.256474 CCCTCAAAGCTTATCTCAAAAGGA 58.744 41.667 0.00 0.00 0.00 3.36
377 689 5.711976 CCCTCAAAGCTTATCTCAAAAGGAA 59.288 40.000 0.00 0.00 0.00 3.36
378 690 6.127786 CCCTCAAAGCTTATCTCAAAAGGAAG 60.128 42.308 0.00 0.00 0.00 3.46
379 691 6.656693 CCTCAAAGCTTATCTCAAAAGGAAGA 59.343 38.462 0.00 0.00 0.00 2.87
380 692 7.148272 CCTCAAAGCTTATCTCAAAAGGAAGAG 60.148 40.741 0.00 0.00 0.00 2.85
381 693 7.453393 TCAAAGCTTATCTCAAAAGGAAGAGA 58.547 34.615 0.00 0.00 44.27 3.10
382 694 7.605691 TCAAAGCTTATCTCAAAAGGAAGAGAG 59.394 37.037 0.00 0.00 43.48 3.20
383 695 5.427378 AGCTTATCTCAAAAGGAAGAGAGC 58.573 41.667 0.00 0.00 43.48 4.09
384 696 4.269844 GCTTATCTCAAAAGGAAGAGAGCG 59.730 45.833 0.00 0.00 43.48 5.03
385 697 3.971245 ATCTCAAAAGGAAGAGAGCGT 57.029 42.857 0.00 0.00 43.48 5.07
386 698 3.032017 TCTCAAAAGGAAGAGAGCGTG 57.968 47.619 0.00 0.00 36.05 5.34
387 699 2.072298 CTCAAAAGGAAGAGAGCGTGG 58.928 52.381 0.00 0.00 33.74 4.94
388 700 0.519077 CAAAAGGAAGAGAGCGTGGC 59.481 55.000 0.00 0.00 0.00 5.01
389 701 0.398318 AAAAGGAAGAGAGCGTGGCT 59.602 50.000 0.00 0.00 43.88 4.75
390 702 1.267121 AAAGGAAGAGAGCGTGGCTA 58.733 50.000 0.00 0.00 39.88 3.93
391 703 0.533032 AAGGAAGAGAGCGTGGCTAC 59.467 55.000 0.00 0.00 39.88 3.58
392 704 1.142097 GGAAGAGAGCGTGGCTACC 59.858 63.158 0.00 0.00 39.88 3.18
393 705 1.605058 GGAAGAGAGCGTGGCTACCA 61.605 60.000 0.00 0.00 39.88 3.25
394 706 0.246635 GAAGAGAGCGTGGCTACCAA 59.753 55.000 0.00 0.00 39.88 3.67
395 707 0.247736 AAGAGAGCGTGGCTACCAAG 59.752 55.000 0.00 0.00 39.88 3.61
396 708 0.900647 AGAGAGCGTGGCTACCAAGT 60.901 55.000 0.00 0.00 39.88 3.16
397 709 0.458716 GAGAGCGTGGCTACCAAGTC 60.459 60.000 0.00 0.00 39.88 3.01
398 710 0.900647 AGAGCGTGGCTACCAAGTCT 60.901 55.000 0.00 0.00 39.88 3.24
399 711 0.037232 GAGCGTGGCTACCAAGTCTT 60.037 55.000 0.00 0.00 39.88 3.01
400 712 1.203994 GAGCGTGGCTACCAAGTCTTA 59.796 52.381 0.00 0.00 39.88 2.10
401 713 1.204941 AGCGTGGCTACCAAGTCTTAG 59.795 52.381 0.00 0.00 36.99 2.18
402 714 1.067071 GCGTGGCTACCAAGTCTTAGT 60.067 52.381 0.00 0.00 35.50 2.24
403 715 2.877335 CGTGGCTACCAAGTCTTAGTC 58.123 52.381 0.00 0.00 34.18 2.59
404 716 2.230508 CGTGGCTACCAAGTCTTAGTCA 59.769 50.000 0.00 0.00 34.18 3.41
405 717 3.305813 CGTGGCTACCAAGTCTTAGTCAA 60.306 47.826 0.00 0.00 34.18 3.18
406 718 4.246458 GTGGCTACCAAGTCTTAGTCAAG 58.754 47.826 0.00 0.00 34.18 3.02
407 719 3.263261 GGCTACCAAGTCTTAGTCAAGC 58.737 50.000 0.00 0.00 0.00 4.01
408 720 2.924290 GCTACCAAGTCTTAGTCAAGCG 59.076 50.000 0.00 0.00 0.00 4.68
409 721 3.367087 GCTACCAAGTCTTAGTCAAGCGA 60.367 47.826 0.00 0.00 0.00 4.93
410 722 3.027974 ACCAAGTCTTAGTCAAGCGAC 57.972 47.619 0.00 0.00 42.95 5.19
411 723 2.364324 ACCAAGTCTTAGTCAAGCGACA 59.636 45.455 0.00 0.00 45.23 4.35
412 724 3.006967 ACCAAGTCTTAGTCAAGCGACAT 59.993 43.478 0.00 0.00 45.23 3.06
413 725 4.219944 ACCAAGTCTTAGTCAAGCGACATA 59.780 41.667 0.00 0.00 45.23 2.29
414 726 5.168569 CCAAGTCTTAGTCAAGCGACATAA 58.831 41.667 0.00 0.00 45.23 1.90
415 727 5.062308 CCAAGTCTTAGTCAAGCGACATAAC 59.938 44.000 0.00 0.00 45.23 1.89
416 728 5.386958 AGTCTTAGTCAAGCGACATAACA 57.613 39.130 0.00 0.00 45.23 2.41
417 729 5.967088 AGTCTTAGTCAAGCGACATAACAT 58.033 37.500 0.00 0.00 45.23 2.71
418 730 6.398918 AGTCTTAGTCAAGCGACATAACATT 58.601 36.000 0.00 0.00 45.23 2.71
419 731 6.874134 AGTCTTAGTCAAGCGACATAACATTT 59.126 34.615 0.00 0.00 45.23 2.32
420 732 8.033038 AGTCTTAGTCAAGCGACATAACATTTA 58.967 33.333 0.00 0.00 45.23 1.40
421 733 8.108782 GTCTTAGTCAAGCGACATAACATTTAC 58.891 37.037 0.00 0.00 45.23 2.01
422 734 8.033038 TCTTAGTCAAGCGACATAACATTTACT 58.967 33.333 0.00 0.00 45.23 2.24
423 735 6.648725 AGTCAAGCGACATAACATTTACTC 57.351 37.500 0.00 0.00 45.23 2.59
424 736 5.581085 AGTCAAGCGACATAACATTTACTCC 59.419 40.000 0.00 0.00 45.23 3.85
425 737 4.873827 TCAAGCGACATAACATTTACTCCC 59.126 41.667 0.00 0.00 0.00 4.30
426 738 4.755266 AGCGACATAACATTTACTCCCT 57.245 40.909 0.00 0.00 0.00 4.20
427 739 5.099042 AGCGACATAACATTTACTCCCTT 57.901 39.130 0.00 0.00 0.00 3.95
428 740 6.229936 AGCGACATAACATTTACTCCCTTA 57.770 37.500 0.00 0.00 0.00 2.69
429 741 6.827727 AGCGACATAACATTTACTCCCTTAT 58.172 36.000 0.00 0.00 0.00 1.73
430 742 7.959175 AGCGACATAACATTTACTCCCTTATA 58.041 34.615 0.00 0.00 0.00 0.98
431 743 8.088981 AGCGACATAACATTTACTCCCTTATAG 58.911 37.037 0.00 0.00 0.00 1.31
432 744 7.871463 GCGACATAACATTTACTCCCTTATAGT 59.129 37.037 0.00 0.00 0.00 2.12
433 745 9.193133 CGACATAACATTTACTCCCTTATAGTG 57.807 37.037 0.00 0.00 0.00 2.74
434 746 8.904099 ACATAACATTTACTCCCTTATAGTGC 57.096 34.615 0.00 0.00 0.00 4.40
435 747 8.714906 ACATAACATTTACTCCCTTATAGTGCT 58.285 33.333 0.00 0.00 0.00 4.40
436 748 8.993121 CATAACATTTACTCCCTTATAGTGCTG 58.007 37.037 0.00 0.00 0.00 4.41
437 749 6.808321 ACATTTACTCCCTTATAGTGCTGA 57.192 37.500 0.00 0.00 0.00 4.26
438 750 7.195374 ACATTTACTCCCTTATAGTGCTGAA 57.805 36.000 0.00 0.00 0.00 3.02
439 751 7.630082 ACATTTACTCCCTTATAGTGCTGAAA 58.370 34.615 0.00 0.00 0.00 2.69
440 752 8.107095 ACATTTACTCCCTTATAGTGCTGAAAA 58.893 33.333 0.00 0.00 0.00 2.29
441 753 9.125026 CATTTACTCCCTTATAGTGCTGAAAAT 57.875 33.333 0.00 0.00 0.00 1.82
442 754 8.506168 TTTACTCCCTTATAGTGCTGAAAATG 57.494 34.615 0.00 0.00 0.00 2.32
443 755 6.067217 ACTCCCTTATAGTGCTGAAAATGT 57.933 37.500 0.00 0.00 0.00 2.71
444 756 6.485171 ACTCCCTTATAGTGCTGAAAATGTT 58.515 36.000 0.00 0.00 0.00 2.71
445 757 7.630082 ACTCCCTTATAGTGCTGAAAATGTTA 58.370 34.615 0.00 0.00 0.00 2.41
446 758 8.275040 ACTCCCTTATAGTGCTGAAAATGTTAT 58.725 33.333 0.00 0.00 0.00 1.89
447 759 9.125026 CTCCCTTATAGTGCTGAAAATGTTATT 57.875 33.333 0.00 0.00 0.00 1.40
457 769 8.947115 GTGCTGAAAATGTTATTAGTACTTCCT 58.053 33.333 0.00 0.00 0.00 3.36
458 770 9.162764 TGCTGAAAATGTTATTAGTACTTCCTC 57.837 33.333 0.00 0.00 0.00 3.71
460 772 8.712285 TGAAAATGTTATTAGTACTTCCTCCG 57.288 34.615 0.00 0.00 0.00 4.63
469 781 2.910977 AGTACTTCCTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
471 783 3.238788 ACTTCCTCCGTCCCAAAATTT 57.761 42.857 0.00 0.00 0.00 1.82
476 788 3.319689 TCCTCCGTCCCAAAATTTTTGTC 59.680 43.478 18.05 9.04 0.00 3.18
480 792 6.079424 TCCGTCCCAAAATTTTTGTCTTAG 57.921 37.500 18.05 5.02 0.00 2.18
482 794 5.918576 CCGTCCCAAAATTTTTGTCTTAGAC 59.081 40.000 18.05 5.27 0.00 2.59
486 798 8.194769 GTCCCAAAATTTTTGTCTTAGACTTGA 58.805 33.333 18.05 0.00 33.15 3.02
487 799 8.923270 TCCCAAAATTTTTGTCTTAGACTTGAT 58.077 29.630 18.05 0.41 33.15 2.57
494 806 7.827819 TTTTGTCTTAGACTTGATACATCCG 57.172 36.000 13.86 0.00 33.15 4.18
495 807 6.525578 TTGTCTTAGACTTGATACATCCGT 57.474 37.500 13.86 0.00 33.15 4.69
514 846 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
515 847 8.691727 CATCCGTATCTAGACAAATTTAAGACG 58.308 37.037 0.00 0.00 0.00 4.18
516 848 7.988737 TCCGTATCTAGACAAATTTAAGACGA 58.011 34.615 0.00 0.00 0.00 4.20
518 850 8.127327 CCGTATCTAGACAAATTTAAGACGAGA 58.873 37.037 0.00 0.00 0.00 4.04
519 851 9.499585 CGTATCTAGACAAATTTAAGACGAGAA 57.500 33.333 0.00 0.00 0.00 2.87
531 863 9.720769 AATTTAAGACGAGAATTTTAGGACAGA 57.279 29.630 0.00 0.00 0.00 3.41
532 864 8.758633 TTTAAGACGAGAATTTTAGGACAGAG 57.241 34.615 0.00 0.00 0.00 3.35
533 865 5.331876 AGACGAGAATTTTAGGACAGAGG 57.668 43.478 0.00 0.00 0.00 3.69
534 866 4.160626 AGACGAGAATTTTAGGACAGAGGG 59.839 45.833 0.00 0.00 0.00 4.30
535 867 4.094476 ACGAGAATTTTAGGACAGAGGGA 58.906 43.478 0.00 0.00 0.00 4.20
536 868 4.160626 ACGAGAATTTTAGGACAGAGGGAG 59.839 45.833 0.00 0.00 0.00 4.30
537 869 4.160626 CGAGAATTTTAGGACAGAGGGAGT 59.839 45.833 0.00 0.00 0.00 3.85
538 870 5.360144 CGAGAATTTTAGGACAGAGGGAGTA 59.640 44.000 0.00 0.00 0.00 2.59
541 873 8.855804 AGAATTTTAGGACAGAGGGAGTATTA 57.144 34.615 0.00 0.00 0.00 0.98
543 875 8.855804 AATTTTAGGACAGAGGGAGTATTAGA 57.144 34.615 0.00 0.00 0.00 2.10
544 876 7.899648 TTTTAGGACAGAGGGAGTATTAGAG 57.100 40.000 0.00 0.00 0.00 2.43
545 877 6.843473 TTAGGACAGAGGGAGTATTAGAGA 57.157 41.667 0.00 0.00 0.00 3.10
547 879 5.701224 AGGACAGAGGGAGTATTAGAGAAG 58.299 45.833 0.00 0.00 0.00 2.85
548 880 4.830600 GGACAGAGGGAGTATTAGAGAAGG 59.169 50.000 0.00 0.00 0.00 3.46
549 881 5.399267 GGACAGAGGGAGTATTAGAGAAGGA 60.399 48.000 0.00 0.00 0.00 3.36
550 882 5.451354 ACAGAGGGAGTATTAGAGAAGGAC 58.549 45.833 0.00 0.00 0.00 3.85
551 883 5.044030 ACAGAGGGAGTATTAGAGAAGGACA 60.044 44.000 0.00 0.00 0.00 4.02
552 884 5.534654 CAGAGGGAGTATTAGAGAAGGACAG 59.465 48.000 0.00 0.00 0.00 3.51
553 885 5.433712 AGAGGGAGTATTAGAGAAGGACAGA 59.566 44.000 0.00 0.00 0.00 3.41
554 886 5.701224 AGGGAGTATTAGAGAAGGACAGAG 58.299 45.833 0.00 0.00 0.00 3.35
555 887 4.830600 GGGAGTATTAGAGAAGGACAGAGG 59.169 50.000 0.00 0.00 0.00 3.69
558 890 5.701224 AGTATTAGAGAAGGACAGAGGGAG 58.299 45.833 0.00 0.00 0.00 4.30
559 891 4.618378 ATTAGAGAAGGACAGAGGGAGT 57.382 45.455 0.00 0.00 0.00 3.85
563 895 4.753186 AGAGAAGGACAGAGGGAGTAAAA 58.247 43.478 0.00 0.00 0.00 1.52
603 935 2.147436 TTTTTGCACAAATCTCCGCC 57.853 45.000 0.00 0.00 0.00 6.13
605 937 2.192664 TTTGCACAAATCTCCGCCTA 57.807 45.000 0.00 0.00 0.00 3.93
606 938 2.192664 TTGCACAAATCTCCGCCTAA 57.807 45.000 0.00 0.00 0.00 2.69
607 939 1.737838 TGCACAAATCTCCGCCTAAG 58.262 50.000 0.00 0.00 0.00 2.18
609 941 2.092968 TGCACAAATCTCCGCCTAAGAT 60.093 45.455 0.00 0.00 34.96 2.40
610 942 2.545946 GCACAAATCTCCGCCTAAGATC 59.454 50.000 0.00 0.00 32.29 2.75
611 943 3.742640 GCACAAATCTCCGCCTAAGATCT 60.743 47.826 0.00 0.00 32.29 2.75
612 944 4.446371 CACAAATCTCCGCCTAAGATCTT 58.554 43.478 13.56 13.56 32.29 2.40
614 946 6.226787 CACAAATCTCCGCCTAAGATCTTAT 58.773 40.000 15.47 0.00 32.29 1.73
615 947 6.146837 CACAAATCTCCGCCTAAGATCTTATG 59.853 42.308 15.47 13.62 32.29 1.90
617 949 5.652994 ATCTCCGCCTAAGATCTTATGAC 57.347 43.478 18.67 9.72 0.00 3.06
619 951 5.877491 TCTCCGCCTAAGATCTTATGACTA 58.123 41.667 18.67 4.89 0.00 2.59
622 954 6.069331 TCCGCCTAAGATCTTATGACTAAGT 58.931 40.000 18.67 0.00 36.51 2.24
623 955 6.550108 TCCGCCTAAGATCTTATGACTAAGTT 59.450 38.462 18.67 0.00 36.51 2.66
624 956 6.642950 CCGCCTAAGATCTTATGACTAAGTTG 59.357 42.308 18.67 3.69 36.51 3.16
625 957 7.426410 CGCCTAAGATCTTATGACTAAGTTGA 58.574 38.462 18.67 0.00 36.51 3.18
626 958 7.921214 CGCCTAAGATCTTATGACTAAGTTGAA 59.079 37.037 18.67 0.00 36.51 2.69
627 959 9.771534 GCCTAAGATCTTATGACTAAGTTGAAT 57.228 33.333 18.67 0.00 36.51 2.57
640 972 9.453572 TGACTAAGTTGAATGAGATTTAGCAAT 57.546 29.630 0.00 0.00 0.00 3.56
641 973 9.928236 GACTAAGTTGAATGAGATTTAGCAATC 57.072 33.333 0.00 0.00 39.45 2.67
672 1004 3.431673 AAAAGCTCTCTTTCTGGGAGG 57.568 47.619 0.00 0.00 41.40 4.30
673 1005 2.037385 AAGCTCTCTTTCTGGGAGGT 57.963 50.000 0.00 0.00 39.11 3.85
674 1006 2.037385 AGCTCTCTTTCTGGGAGGTT 57.963 50.000 0.00 0.00 34.73 3.50
675 1007 3.191888 AGCTCTCTTTCTGGGAGGTTA 57.808 47.619 0.00 0.00 34.73 2.85
676 1008 3.521727 AGCTCTCTTTCTGGGAGGTTAA 58.478 45.455 0.00 0.00 34.73 2.01
677 1009 3.262151 AGCTCTCTTTCTGGGAGGTTAAC 59.738 47.826 0.00 0.00 34.73 2.01
678 1010 3.008049 GCTCTCTTTCTGGGAGGTTAACA 59.992 47.826 8.10 0.00 0.00 2.41
679 1011 4.323868 GCTCTCTTTCTGGGAGGTTAACAT 60.324 45.833 8.10 0.00 0.00 2.71
680 1012 5.104900 GCTCTCTTTCTGGGAGGTTAACATA 60.105 44.000 8.10 0.00 0.00 2.29
681 1013 6.576442 GCTCTCTTTCTGGGAGGTTAACATAA 60.576 42.308 8.10 0.00 0.00 1.90
682 1014 6.708285 TCTCTTTCTGGGAGGTTAACATAAC 58.292 40.000 8.10 0.00 0.00 1.89
683 1015 6.271391 TCTCTTTCTGGGAGGTTAACATAACA 59.729 38.462 8.10 2.25 0.00 2.41
684 1016 6.472887 TCTTTCTGGGAGGTTAACATAACAG 58.527 40.000 14.17 14.17 0.00 3.16
685 1017 4.837093 TCTGGGAGGTTAACATAACAGG 57.163 45.455 17.99 5.75 0.00 4.00
686 1018 4.431378 TCTGGGAGGTTAACATAACAGGA 58.569 43.478 17.99 7.37 0.00 3.86
687 1019 4.469945 TCTGGGAGGTTAACATAACAGGAG 59.530 45.833 17.99 3.78 0.00 3.69
688 1020 3.054655 TGGGAGGTTAACATAACAGGAGC 60.055 47.826 8.10 0.00 0.00 4.70
689 1021 3.054655 GGGAGGTTAACATAACAGGAGCA 60.055 47.826 8.10 0.00 0.00 4.26
690 1022 4.385310 GGGAGGTTAACATAACAGGAGCAT 60.385 45.833 8.10 0.00 0.00 3.79
691 1023 5.193679 GGAGGTTAACATAACAGGAGCATT 58.806 41.667 8.10 0.00 0.00 3.56
692 1024 5.652452 GGAGGTTAACATAACAGGAGCATTT 59.348 40.000 8.10 0.00 0.00 2.32
693 1025 6.826741 GGAGGTTAACATAACAGGAGCATTTA 59.173 38.462 8.10 0.00 0.00 1.40
694 1026 7.201705 GGAGGTTAACATAACAGGAGCATTTAC 60.202 40.741 8.10 0.00 0.00 2.01
695 1027 6.602009 AGGTTAACATAACAGGAGCATTTACC 59.398 38.462 8.10 0.00 0.00 2.85
696 1028 6.183360 GGTTAACATAACAGGAGCATTTACCC 60.183 42.308 8.10 0.00 0.00 3.69
697 1029 3.541632 ACATAACAGGAGCATTTACCCG 58.458 45.455 0.00 0.00 0.00 5.28
698 1030 3.199071 ACATAACAGGAGCATTTACCCGA 59.801 43.478 0.00 0.00 0.00 5.14
699 1031 2.871096 AACAGGAGCATTTACCCGAA 57.129 45.000 0.00 0.00 0.00 4.30
700 1032 2.871096 ACAGGAGCATTTACCCGAAA 57.129 45.000 0.00 0.00 0.00 3.46
701 1033 3.149005 ACAGGAGCATTTACCCGAAAA 57.851 42.857 0.00 0.00 0.00 2.29
749 1081 0.530744 TGACCACGAGATGCACCTAC 59.469 55.000 0.00 0.00 0.00 3.18
751 1083 0.614979 ACCACGAGATGCACCTACCT 60.615 55.000 0.00 0.00 0.00 3.08
752 1084 0.103208 CCACGAGATGCACCTACCTC 59.897 60.000 0.00 0.00 0.00 3.85
753 1085 0.103208 CACGAGATGCACCTACCTCC 59.897 60.000 0.00 0.00 0.00 4.30
754 1086 1.043673 ACGAGATGCACCTACCTCCC 61.044 60.000 0.00 0.00 0.00 4.30
755 1087 1.749334 CGAGATGCACCTACCTCCCC 61.749 65.000 0.00 0.00 0.00 4.81
756 1088 1.384643 AGATGCACCTACCTCCCCC 60.385 63.158 0.00 0.00 0.00 5.40
757 1089 1.384643 GATGCACCTACCTCCCCCT 60.385 63.158 0.00 0.00 0.00 4.79
758 1090 1.384643 ATGCACCTACCTCCCCCTC 60.385 63.158 0.00 0.00 0.00 4.30
759 1091 2.768769 GCACCTACCTCCCCCTCC 60.769 72.222 0.00 0.00 0.00 4.30
760 1092 2.040779 CACCTACCTCCCCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
761 1093 2.204803 ACCTACCTCCCCCTCCCT 60.205 66.667 0.00 0.00 0.00 4.20
801 1133 3.462483 TGTTTGGACGCTTACTTCAGA 57.538 42.857 0.00 0.00 0.00 3.27
802 1134 3.390135 TGTTTGGACGCTTACTTCAGAG 58.610 45.455 0.00 0.00 0.00 3.35
847 1179 1.276421 GTACAGCCACATGTCCACTCT 59.724 52.381 0.00 0.00 34.56 3.24
863 1195 3.199946 CCACTCTTGCTATTCCCACCTAA 59.800 47.826 0.00 0.00 0.00 2.69
882 1214 1.240337 ACCCTACTCCCACCCCCATA 61.240 60.000 0.00 0.00 0.00 2.74
964 1296 2.632028 GCTGCTCCATCATCTTCCTCTA 59.368 50.000 0.00 0.00 0.00 2.43
979 1313 9.480053 CATCTTCCTCTATTTCTCTTTCATCTC 57.520 37.037 0.00 0.00 0.00 2.75
1063 1397 7.117241 TGTTTCAAACAAATTTTAACACGCA 57.883 28.000 0.00 0.00 38.72 5.24
1064 1398 7.572759 TGTTTCAAACAAATTTTAACACGCAA 58.427 26.923 0.00 0.00 38.72 4.85
1066 1400 9.056306 GTTTCAAACAAATTTTAACACGCAAAT 57.944 25.926 0.00 0.00 0.00 2.32
1077 1411 2.494059 ACACGCAAATGTCAGCTAGTT 58.506 42.857 0.00 0.00 0.00 2.24
1086 1420 6.541086 CAAATGTCAGCTAGTTTCATGAGTC 58.459 40.000 0.00 0.00 0.00 3.36
1130 1464 6.016777 ACAGAGTCAGCTTTTGATCGAATTTT 60.017 34.615 0.00 0.00 38.29 1.82
1255 1593 3.958147 CTCGTCGGCCATGGCAAGT 62.958 63.158 36.56 0.00 44.11 3.16
1474 1822 1.733041 CGAGGCTTTCTTCGACGCA 60.733 57.895 0.00 0.00 0.00 5.24
1475 1823 1.078759 CGAGGCTTTCTTCGACGCAT 61.079 55.000 0.00 0.00 0.00 4.73
1501 1849 1.068083 CGGTGAGACGATGGATGGG 59.932 63.158 0.00 0.00 35.47 4.00
1511 1859 2.028112 ACGATGGATGGGTGATAATCGG 60.028 50.000 7.64 0.00 40.79 4.18
1611 1961 0.404040 GGGTGGTGGTGATCAAGGAA 59.596 55.000 0.00 0.00 0.00 3.36
1692 2042 1.823828 CGGACAAATACGAGGACGAG 58.176 55.000 0.00 0.00 42.66 4.18
2018 2392 8.566008 GCTTTTGCAATAAATCGATAAGTCAT 57.434 30.769 0.00 0.00 46.58 3.06
2086 2470 1.474879 TCGATCCAACGCTGTACATCA 59.525 47.619 0.00 0.00 0.00 3.07
2089 2473 3.309682 CGATCCAACGCTGTACATCAAAT 59.690 43.478 0.00 0.00 0.00 2.32
2183 2575 4.718961 ACTAAGATGCACAGAACCAAACT 58.281 39.130 0.00 0.00 0.00 2.66
2250 2652 6.758254 TCATGAAAAGAGACTGTATGACACA 58.242 36.000 0.00 0.00 35.30 3.72
2279 2681 3.774842 TGGAGGGCCAATCCTAAAATT 57.225 42.857 22.87 0.00 42.49 1.82
2281 2683 4.542697 TGGAGGGCCAATCCTAAAATTAC 58.457 43.478 22.87 0.00 42.49 1.89
2315 2718 3.511146 TGTCGGGTAAAAGTATTCCTCGT 59.489 43.478 0.00 0.00 0.00 4.18
2337 2740 5.332581 CGTCATGTTCTTCAAGTGTGTACAG 60.333 44.000 0.00 0.00 0.00 2.74
2351 2754 4.689345 GTGTGTACAGACCTCCATAAACAC 59.311 45.833 12.00 0.58 37.18 3.32
2352 2755 4.251268 GTGTACAGACCTCCATAAACACC 58.749 47.826 0.00 0.00 31.96 4.16
2364 2767 4.956700 TCCATAAACACCTCTCGATTCTCT 59.043 41.667 0.00 0.00 0.00 3.10
2398 2803 2.032054 CGACTATAAACGGAGCGTACCA 59.968 50.000 0.00 0.00 39.99 3.25
2537 2943 8.233349 TCTAGACCTATACTCTATCCCATGTT 57.767 38.462 0.00 0.00 0.00 2.71
2540 2946 6.885376 AGACCTATACTCTATCCCATGTTACG 59.115 42.308 0.00 0.00 0.00 3.18
2562 2968 7.328277 ACGAGTTGCCAAATATATTAGCAAA 57.672 32.000 25.69 14.30 39.38 3.68
2575 2981 9.520515 AATATATTAGCAAAACTATGTGGAGGG 57.479 33.333 0.00 0.00 0.00 4.30
2582 2988 4.569719 AAACTATGTGGAGGGTACAAGG 57.430 45.455 0.00 0.00 0.00 3.61
2583 2989 3.484953 ACTATGTGGAGGGTACAAGGA 57.515 47.619 0.00 0.00 0.00 3.36
2585 2991 4.172807 ACTATGTGGAGGGTACAAGGAAA 58.827 43.478 0.00 0.00 0.00 3.13
2588 2994 3.558033 TGTGGAGGGTACAAGGAAAAAC 58.442 45.455 0.00 0.00 0.00 2.43
2666 3075 6.531240 GTGTTTTATTGTTTCGCCATGATGAT 59.469 34.615 0.00 0.00 0.00 2.45
2698 3107 7.648908 ACACATTGTGTAGTTTCATGTCAATTG 59.351 33.333 20.56 0.00 45.56 2.32
2792 3204 7.888250 AAGGGTATCTTCATCTTTCAAATCC 57.112 36.000 0.00 0.00 0.00 3.01
2849 3261 6.502136 TCAGAGCACTATACATAGAATCCG 57.498 41.667 3.27 0.00 34.50 4.18
2851 3263 4.098055 AGCACTATACATAGAATCCGCG 57.902 45.455 0.00 0.00 34.50 6.46
2852 3264 3.756963 AGCACTATACATAGAATCCGCGA 59.243 43.478 8.23 0.00 34.50 5.87
2853 3265 3.852536 GCACTATACATAGAATCCGCGAC 59.147 47.826 8.23 0.00 34.50 5.19
2900 3312 3.119245 CCACCAAAATTCATCAGCTCCTG 60.119 47.826 0.00 0.00 0.00 3.86
2928 3340 5.542635 ACAGTTGTACCTTGGATAGTCTCAA 59.457 40.000 0.00 0.00 0.00 3.02
2930 3342 7.106239 CAGTTGTACCTTGGATAGTCTCAATT 58.894 38.462 0.00 0.00 0.00 2.32
2932 3344 8.478877 AGTTGTACCTTGGATAGTCTCAATTAG 58.521 37.037 0.00 0.00 0.00 1.73
2951 3363 6.727824 ATTAGAAAGTGTTCCACGATTCAG 57.272 37.500 14.13 0.00 39.64 3.02
2959 3371 1.450312 CCACGATTCAGGTCTGGGC 60.450 63.158 0.00 0.00 0.00 5.36
2961 3373 1.918293 ACGATTCAGGTCTGGGCCA 60.918 57.895 5.85 5.85 0.00 5.36
2963 3375 0.107017 CGATTCAGGTCTGGGCCAAT 60.107 55.000 8.04 0.00 0.00 3.16
2965 3377 2.421388 CGATTCAGGTCTGGGCCAATTA 60.421 50.000 8.04 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.979288 ACCACTGTACTCTTATCTTCGTT 57.021 39.130 0.00 0.00 0.00 3.85
19 20 5.297278 AGCTACCACTGTACTCTTATCTTCG 59.703 44.000 0.00 0.00 0.00 3.79
37 40 5.859495 AGAGCTAATGGATGTTAAGCTACC 58.141 41.667 0.00 0.00 0.00 3.18
65 68 7.884877 TGGTCTGCAATTATTATTATAGCTGCT 59.115 33.333 7.57 7.57 31.72 4.24
66 69 8.044060 TGGTCTGCAATTATTATTATAGCTGC 57.956 34.615 0.00 0.00 0.00 5.25
67 70 9.224267 ACTGGTCTGCAATTATTATTATAGCTG 57.776 33.333 0.00 0.00 0.00 4.24
74 81 8.893727 GTCAAGTACTGGTCTGCAATTATTATT 58.106 33.333 0.00 0.00 0.00 1.40
87 94 5.875359 CCCTTTCTAATGTCAAGTACTGGTC 59.125 44.000 0.00 0.00 0.00 4.02
100 107 5.102953 TGATCCAGACACCCTTTCTAATG 57.897 43.478 0.00 0.00 0.00 1.90
114 121 5.241403 ACAACAACCTAACATGATCCAGA 57.759 39.130 0.00 0.00 0.00 3.86
152 159 2.015587 GCTCTCTCCCTGCAATCAAAG 58.984 52.381 0.00 0.00 0.00 2.77
168 175 0.179067 TTTGTTGGAACGTCCGCTCT 60.179 50.000 0.00 0.00 40.17 4.09
170 177 1.314730 AATTTGTTGGAACGTCCGCT 58.685 45.000 0.00 0.00 40.17 5.52
171 178 2.048498 GAAATTTGTTGGAACGTCCGC 58.952 47.619 0.00 0.00 40.17 5.54
172 179 2.303537 CGAAATTTGTTGGAACGTCCG 58.696 47.619 0.00 0.00 40.17 4.79
177 184 4.877282 TCCATTCCGAAATTTGTTGGAAC 58.123 39.130 14.90 0.00 42.84 3.62
178 185 5.537300 TTCCATTCCGAAATTTGTTGGAA 57.463 34.783 14.93 14.93 44.06 3.53
204 211 4.083862 GGGACAGGTCGCTGGGAC 62.084 72.222 15.72 15.72 45.31 4.46
211 218 4.436998 GAGCACGGGGACAGGTCG 62.437 72.222 0.00 0.00 0.00 4.79
218 225 3.766691 GGTTAGCGAGCACGGGGA 61.767 66.667 5.52 0.00 40.15 4.81
220 227 3.718210 GAGGGTTAGCGAGCACGGG 62.718 68.421 5.52 0.00 40.15 5.28
222 229 0.029567 CTAGAGGGTTAGCGAGCACG 59.970 60.000 0.00 0.00 42.93 5.34
227 234 2.822707 AAGGTCTAGAGGGTTAGCGA 57.177 50.000 0.00 0.00 0.00 4.93
229 236 2.034432 GCGTAAGGTCTAGAGGGTTAGC 59.966 54.545 0.00 0.00 38.28 3.09
249 265 1.194772 GTACAAGAAAGCGGACACAGC 59.805 52.381 0.00 0.00 0.00 4.40
254 270 3.502237 TCCGTACAAGAAAGCGGAC 57.498 52.632 0.06 0.00 46.80 4.79
277 502 3.071312 TGCATCCACAATTGCCTTTTTCT 59.929 39.130 5.05 0.00 38.08 2.52
278 503 3.401182 TGCATCCACAATTGCCTTTTTC 58.599 40.909 5.05 0.00 38.08 2.29
290 602 2.502142 AGCATCTTTCTGCATCCACA 57.498 45.000 0.00 0.00 44.77 4.17
293 605 2.569059 TGCTAGCATCTTTCTGCATCC 58.431 47.619 14.93 0.00 44.77 3.51
319 631 4.219070 TGCTCCTCTTTTTACTGCGTACTA 59.781 41.667 0.00 0.00 0.00 1.82
320 632 3.006537 TGCTCCTCTTTTTACTGCGTACT 59.993 43.478 0.00 0.00 0.00 2.73
321 633 3.323243 TGCTCCTCTTTTTACTGCGTAC 58.677 45.455 0.00 0.00 0.00 3.67
322 634 3.671008 TGCTCCTCTTTTTACTGCGTA 57.329 42.857 0.00 0.00 0.00 4.42
323 635 2.543777 TGCTCCTCTTTTTACTGCGT 57.456 45.000 0.00 0.00 0.00 5.24
324 636 3.896648 TTTGCTCCTCTTTTTACTGCG 57.103 42.857 0.00 0.00 0.00 5.18
325 637 6.677913 TGTTATTTGCTCCTCTTTTTACTGC 58.322 36.000 0.00 0.00 0.00 4.40
326 638 6.803807 GCTGTTATTTGCTCCTCTTTTTACTG 59.196 38.462 0.00 0.00 0.00 2.74
327 639 6.071896 GGCTGTTATTTGCTCCTCTTTTTACT 60.072 38.462 0.00 0.00 0.00 2.24
328 640 6.093404 GGCTGTTATTTGCTCCTCTTTTTAC 58.907 40.000 0.00 0.00 0.00 2.01
329 641 5.185056 GGGCTGTTATTTGCTCCTCTTTTTA 59.815 40.000 0.00 0.00 0.00 1.52
330 642 4.021104 GGGCTGTTATTTGCTCCTCTTTTT 60.021 41.667 0.00 0.00 0.00 1.94
331 643 3.511540 GGGCTGTTATTTGCTCCTCTTTT 59.488 43.478 0.00 0.00 0.00 2.27
332 644 3.092301 GGGCTGTTATTTGCTCCTCTTT 58.908 45.455 0.00 0.00 0.00 2.52
333 645 2.621668 GGGGCTGTTATTTGCTCCTCTT 60.622 50.000 0.00 0.00 45.84 2.85
334 646 1.064389 GGGGCTGTTATTTGCTCCTCT 60.064 52.381 0.00 0.00 45.84 3.69
335 647 1.393603 GGGGCTGTTATTTGCTCCTC 58.606 55.000 0.00 0.00 45.84 3.71
336 648 3.596362 GGGGCTGTTATTTGCTCCT 57.404 52.632 0.00 0.00 45.84 3.69
338 650 1.340991 TGAGGGGGCTGTTATTTGCTC 60.341 52.381 0.00 0.00 0.00 4.26
339 651 0.704076 TGAGGGGGCTGTTATTTGCT 59.296 50.000 0.00 0.00 0.00 3.91
340 652 1.555967 TTGAGGGGGCTGTTATTTGC 58.444 50.000 0.00 0.00 0.00 3.68
341 653 2.094026 GCTTTGAGGGGGCTGTTATTTG 60.094 50.000 0.00 0.00 0.00 2.32
342 654 2.179427 GCTTTGAGGGGGCTGTTATTT 58.821 47.619 0.00 0.00 0.00 1.40
343 655 1.359130 AGCTTTGAGGGGGCTGTTATT 59.641 47.619 0.00 0.00 34.82 1.40
344 656 1.002857 AGCTTTGAGGGGGCTGTTAT 58.997 50.000 0.00 0.00 34.82 1.89
345 657 0.777446 AAGCTTTGAGGGGGCTGTTA 59.223 50.000 0.00 0.00 36.37 2.41
346 658 0.777446 TAAGCTTTGAGGGGGCTGTT 59.223 50.000 3.20 0.00 36.37 3.16
347 659 1.002857 ATAAGCTTTGAGGGGGCTGT 58.997 50.000 3.20 0.00 36.37 4.40
348 660 1.213926 AGATAAGCTTTGAGGGGGCTG 59.786 52.381 3.20 0.00 36.37 4.85
349 661 1.492599 GAGATAAGCTTTGAGGGGGCT 59.507 52.381 3.20 0.00 37.99 5.19
350 662 1.212935 TGAGATAAGCTTTGAGGGGGC 59.787 52.381 3.20 0.00 0.00 5.80
351 663 3.652057 TTGAGATAAGCTTTGAGGGGG 57.348 47.619 3.20 0.00 0.00 5.40
352 664 4.400567 CCTTTTGAGATAAGCTTTGAGGGG 59.599 45.833 3.20 0.00 0.00 4.79
353 665 5.256474 TCCTTTTGAGATAAGCTTTGAGGG 58.744 41.667 3.20 0.00 0.00 4.30
354 666 6.656693 TCTTCCTTTTGAGATAAGCTTTGAGG 59.343 38.462 3.20 1.40 0.00 3.86
355 667 7.605691 TCTCTTCCTTTTGAGATAAGCTTTGAG 59.394 37.037 3.20 0.00 34.77 3.02
356 668 7.453393 TCTCTTCCTTTTGAGATAAGCTTTGA 58.547 34.615 3.20 0.00 34.77 2.69
357 669 7.626028 GCTCTCTTCCTTTTGAGATAAGCTTTG 60.626 40.741 3.20 0.00 38.46 2.77
358 670 6.374053 GCTCTCTTCCTTTTGAGATAAGCTTT 59.626 38.462 3.20 0.00 38.46 3.51
359 671 5.879777 GCTCTCTTCCTTTTGAGATAAGCTT 59.120 40.000 3.48 3.48 38.46 3.74
360 672 5.427378 GCTCTCTTCCTTTTGAGATAAGCT 58.573 41.667 0.00 0.00 38.46 3.74
361 673 4.269844 CGCTCTCTTCCTTTTGAGATAAGC 59.730 45.833 0.00 0.00 38.46 3.09
362 674 5.290643 CACGCTCTCTTCCTTTTGAGATAAG 59.709 44.000 0.00 0.00 38.46 1.73
363 675 5.171476 CACGCTCTCTTCCTTTTGAGATAA 58.829 41.667 0.00 0.00 38.46 1.75
364 676 4.382040 CCACGCTCTCTTCCTTTTGAGATA 60.382 45.833 0.00 0.00 38.46 1.98
365 677 3.594134 CACGCTCTCTTCCTTTTGAGAT 58.406 45.455 0.00 0.00 38.46 2.75
366 678 2.289072 CCACGCTCTCTTCCTTTTGAGA 60.289 50.000 0.00 0.00 37.69 3.27
367 679 2.072298 CCACGCTCTCTTCCTTTTGAG 58.928 52.381 0.00 0.00 0.00 3.02
368 680 1.878102 GCCACGCTCTCTTCCTTTTGA 60.878 52.381 0.00 0.00 0.00 2.69
369 681 0.519077 GCCACGCTCTCTTCCTTTTG 59.481 55.000 0.00 0.00 0.00 2.44
370 682 0.398318 AGCCACGCTCTCTTCCTTTT 59.602 50.000 0.00 0.00 30.62 2.27
371 683 1.066787 GTAGCCACGCTCTCTTCCTTT 60.067 52.381 0.00 0.00 40.44 3.11
372 684 0.533032 GTAGCCACGCTCTCTTCCTT 59.467 55.000 0.00 0.00 40.44 3.36
373 685 1.324005 GGTAGCCACGCTCTCTTCCT 61.324 60.000 0.00 0.00 40.44 3.36
374 686 1.142097 GGTAGCCACGCTCTCTTCC 59.858 63.158 0.00 0.00 40.44 3.46
375 687 0.246635 TTGGTAGCCACGCTCTCTTC 59.753 55.000 0.00 0.00 40.44 2.87
376 688 0.247736 CTTGGTAGCCACGCTCTCTT 59.752 55.000 0.00 0.00 40.44 2.85
377 689 0.900647 ACTTGGTAGCCACGCTCTCT 60.901 55.000 0.00 0.00 40.44 3.10
378 690 0.458716 GACTTGGTAGCCACGCTCTC 60.459 60.000 0.00 0.00 40.44 3.20
379 691 0.900647 AGACTTGGTAGCCACGCTCT 60.901 55.000 0.00 0.00 40.44 4.09
380 692 0.037232 AAGACTTGGTAGCCACGCTC 60.037 55.000 0.00 0.00 40.44 5.03
381 693 1.204941 CTAAGACTTGGTAGCCACGCT 59.795 52.381 0.00 0.00 43.41 5.07
382 694 1.067071 ACTAAGACTTGGTAGCCACGC 60.067 52.381 1.80 0.00 30.78 5.34
383 695 2.230508 TGACTAAGACTTGGTAGCCACG 59.769 50.000 3.93 0.00 30.78 4.94
384 696 3.955650 TGACTAAGACTTGGTAGCCAC 57.044 47.619 3.93 0.00 30.78 5.01
385 697 3.306780 GCTTGACTAAGACTTGGTAGCCA 60.307 47.826 12.97 2.30 35.92 4.75
386 698 3.263261 GCTTGACTAAGACTTGGTAGCC 58.737 50.000 12.97 0.00 35.92 3.93
387 699 2.924290 CGCTTGACTAAGACTTGGTAGC 59.076 50.000 13.66 13.66 35.92 3.58
388 700 4.167268 GTCGCTTGACTAAGACTTGGTAG 58.833 47.826 3.93 0.93 39.61 3.18
389 701 3.570975 TGTCGCTTGACTAAGACTTGGTA 59.429 43.478 3.93 0.00 43.29 3.25
390 702 2.364324 TGTCGCTTGACTAAGACTTGGT 59.636 45.455 3.54 3.54 43.29 3.67
391 703 3.026630 TGTCGCTTGACTAAGACTTGG 57.973 47.619 0.00 0.00 43.29 3.61
392 704 5.633601 TGTTATGTCGCTTGACTAAGACTTG 59.366 40.000 0.00 0.00 43.29 3.16
393 705 5.779922 TGTTATGTCGCTTGACTAAGACTT 58.220 37.500 0.00 0.00 43.29 3.01
394 706 5.386958 TGTTATGTCGCTTGACTAAGACT 57.613 39.130 0.00 0.00 43.29 3.24
395 707 6.648725 AATGTTATGTCGCTTGACTAAGAC 57.351 37.500 0.00 0.00 43.29 3.01
396 708 8.033038 AGTAAATGTTATGTCGCTTGACTAAGA 58.967 33.333 0.00 0.00 43.29 2.10
397 709 8.186178 AGTAAATGTTATGTCGCTTGACTAAG 57.814 34.615 0.00 0.00 43.29 2.18
398 710 7.277098 GGAGTAAATGTTATGTCGCTTGACTAA 59.723 37.037 0.00 0.00 43.29 2.24
399 711 6.755141 GGAGTAAATGTTATGTCGCTTGACTA 59.245 38.462 0.00 0.00 43.29 2.59
400 712 5.581085 GGAGTAAATGTTATGTCGCTTGACT 59.419 40.000 0.00 0.00 43.29 3.41
401 713 5.220605 GGGAGTAAATGTTATGTCGCTTGAC 60.221 44.000 0.00 0.00 43.19 3.18
402 714 4.873827 GGGAGTAAATGTTATGTCGCTTGA 59.126 41.667 0.00 0.00 0.00 3.02
403 715 4.876107 AGGGAGTAAATGTTATGTCGCTTG 59.124 41.667 0.00 0.00 0.00 4.01
404 716 5.099042 AGGGAGTAAATGTTATGTCGCTT 57.901 39.130 0.00 0.00 0.00 4.68
405 717 4.755266 AGGGAGTAAATGTTATGTCGCT 57.245 40.909 0.00 0.00 0.00 4.93
406 718 7.871463 ACTATAAGGGAGTAAATGTTATGTCGC 59.129 37.037 0.00 0.00 0.00 5.19
407 719 9.193133 CACTATAAGGGAGTAAATGTTATGTCG 57.807 37.037 0.00 0.00 0.00 4.35
408 720 8.989980 GCACTATAAGGGAGTAAATGTTATGTC 58.010 37.037 0.00 0.00 0.00 3.06
409 721 8.714906 AGCACTATAAGGGAGTAAATGTTATGT 58.285 33.333 0.00 0.00 0.00 2.29
410 722 8.993121 CAGCACTATAAGGGAGTAAATGTTATG 58.007 37.037 0.00 0.00 0.00 1.90
411 723 8.934697 TCAGCACTATAAGGGAGTAAATGTTAT 58.065 33.333 0.00 0.00 0.00 1.89
412 724 8.313944 TCAGCACTATAAGGGAGTAAATGTTA 57.686 34.615 0.00 0.00 0.00 2.41
413 725 7.195374 TCAGCACTATAAGGGAGTAAATGTT 57.805 36.000 0.00 0.00 0.00 2.71
414 726 6.808321 TCAGCACTATAAGGGAGTAAATGT 57.192 37.500 0.00 0.00 0.00 2.71
415 727 8.506168 TTTTCAGCACTATAAGGGAGTAAATG 57.494 34.615 0.00 0.00 0.00 2.32
416 728 9.125026 CATTTTCAGCACTATAAGGGAGTAAAT 57.875 33.333 0.00 0.00 0.00 1.40
417 729 8.107095 ACATTTTCAGCACTATAAGGGAGTAAA 58.893 33.333 0.00 0.00 0.00 2.01
418 730 7.630082 ACATTTTCAGCACTATAAGGGAGTAA 58.370 34.615 0.00 0.00 0.00 2.24
419 731 7.195374 ACATTTTCAGCACTATAAGGGAGTA 57.805 36.000 0.00 0.00 0.00 2.59
420 732 6.067217 ACATTTTCAGCACTATAAGGGAGT 57.933 37.500 0.00 0.00 0.00 3.85
421 733 8.682936 ATAACATTTTCAGCACTATAAGGGAG 57.317 34.615 0.00 0.00 0.00 4.30
430 742 8.947115 GGAAGTACTAATAACATTTTCAGCACT 58.053 33.333 0.00 0.00 0.00 4.40
431 743 8.947115 AGGAAGTACTAATAACATTTTCAGCAC 58.053 33.333 0.00 0.00 0.00 4.40
432 744 9.162764 GAGGAAGTACTAATAACATTTTCAGCA 57.837 33.333 0.00 0.00 0.00 4.41
433 745 8.613482 GGAGGAAGTACTAATAACATTTTCAGC 58.387 37.037 0.00 0.00 0.00 4.26
434 746 8.818057 CGGAGGAAGTACTAATAACATTTTCAG 58.182 37.037 0.00 0.00 0.00 3.02
435 747 8.316214 ACGGAGGAAGTACTAATAACATTTTCA 58.684 33.333 0.00 0.00 0.00 2.69
436 748 8.713737 ACGGAGGAAGTACTAATAACATTTTC 57.286 34.615 0.00 0.00 0.00 2.29
437 749 7.767659 GGACGGAGGAAGTACTAATAACATTTT 59.232 37.037 0.00 0.00 0.00 1.82
438 750 7.270779 GGACGGAGGAAGTACTAATAACATTT 58.729 38.462 0.00 0.00 0.00 2.32
439 751 6.183360 GGGACGGAGGAAGTACTAATAACATT 60.183 42.308 0.00 0.00 0.00 2.71
440 752 5.303845 GGGACGGAGGAAGTACTAATAACAT 59.696 44.000 0.00 0.00 0.00 2.71
441 753 4.646492 GGGACGGAGGAAGTACTAATAACA 59.354 45.833 0.00 0.00 0.00 2.41
442 754 4.646492 TGGGACGGAGGAAGTACTAATAAC 59.354 45.833 0.00 0.00 0.00 1.89
443 755 4.870636 TGGGACGGAGGAAGTACTAATAA 58.129 43.478 0.00 0.00 0.00 1.40
444 756 4.524802 TGGGACGGAGGAAGTACTAATA 57.475 45.455 0.00 0.00 0.00 0.98
445 757 3.393426 TGGGACGGAGGAAGTACTAAT 57.607 47.619 0.00 0.00 0.00 1.73
446 758 2.905415 TGGGACGGAGGAAGTACTAA 57.095 50.000 0.00 0.00 0.00 2.24
447 759 2.905415 TTGGGACGGAGGAAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
452 764 4.202212 ACAAAAATTTTGGGACGGAGGAAG 60.202 41.667 20.79 0.00 0.00 3.46
454 766 3.301274 ACAAAAATTTTGGGACGGAGGA 58.699 40.909 20.79 0.00 0.00 3.71
457 769 5.828859 TCTAAGACAAAAATTTTGGGACGGA 59.171 36.000 20.79 11.04 0.00 4.69
458 770 5.918576 GTCTAAGACAAAAATTTTGGGACGG 59.081 40.000 20.79 9.23 32.09 4.79
460 772 8.194769 TCAAGTCTAAGACAAAAATTTTGGGAC 58.805 33.333 20.79 17.50 34.60 4.46
469 781 7.876068 ACGGATGTATCAAGTCTAAGACAAAAA 59.124 33.333 0.00 0.00 34.60 1.94
471 783 6.931838 ACGGATGTATCAAGTCTAAGACAAA 58.068 36.000 0.00 0.00 34.60 2.83
488 800 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
489 801 8.691727 CGTCTTAAATTTGTCTAGATACGGATG 58.308 37.037 0.00 0.00 0.00 3.51
490 802 8.627403 TCGTCTTAAATTTGTCTAGATACGGAT 58.373 33.333 0.00 0.00 0.00 4.18
491 803 7.988737 TCGTCTTAAATTTGTCTAGATACGGA 58.011 34.615 0.00 0.00 0.00 4.69
492 804 8.127327 TCTCGTCTTAAATTTGTCTAGATACGG 58.873 37.037 0.00 0.00 0.00 4.02
493 805 9.499585 TTCTCGTCTTAAATTTGTCTAGATACG 57.500 33.333 0.00 0.00 0.00 3.06
508 840 7.321153 CCTCTGTCCTAAAATTCTCGTCTTAA 58.679 38.462 0.00 0.00 0.00 1.85
512 844 4.159879 TCCCTCTGTCCTAAAATTCTCGTC 59.840 45.833 0.00 0.00 0.00 4.20
513 845 4.094476 TCCCTCTGTCCTAAAATTCTCGT 58.906 43.478 0.00 0.00 0.00 4.18
514 846 4.160626 ACTCCCTCTGTCCTAAAATTCTCG 59.839 45.833 0.00 0.00 0.00 4.04
515 847 5.685520 ACTCCCTCTGTCCTAAAATTCTC 57.314 43.478 0.00 0.00 0.00 2.87
516 848 7.757242 AATACTCCCTCTGTCCTAAAATTCT 57.243 36.000 0.00 0.00 0.00 2.40
518 850 8.855804 TCTAATACTCCCTCTGTCCTAAAATT 57.144 34.615 0.00 0.00 0.00 1.82
519 851 8.290277 TCTCTAATACTCCCTCTGTCCTAAAAT 58.710 37.037 0.00 0.00 0.00 1.82
521 853 7.222180 TCTCTAATACTCCCTCTGTCCTAAA 57.778 40.000 0.00 0.00 0.00 1.85
522 854 6.843473 TCTCTAATACTCCCTCTGTCCTAA 57.157 41.667 0.00 0.00 0.00 2.69
523 855 6.183361 CCTTCTCTAATACTCCCTCTGTCCTA 60.183 46.154 0.00 0.00 0.00 2.94
525 857 4.830600 CCTTCTCTAATACTCCCTCTGTCC 59.169 50.000 0.00 0.00 0.00 4.02
526 858 5.533528 GTCCTTCTCTAATACTCCCTCTGTC 59.466 48.000 0.00 0.00 0.00 3.51
529 861 5.433712 TCTGTCCTTCTCTAATACTCCCTCT 59.566 44.000 0.00 0.00 0.00 3.69
530 862 5.697067 TCTGTCCTTCTCTAATACTCCCTC 58.303 45.833 0.00 0.00 0.00 4.30
531 863 5.399727 CCTCTGTCCTTCTCTAATACTCCCT 60.400 48.000 0.00 0.00 0.00 4.20
532 864 4.830600 CCTCTGTCCTTCTCTAATACTCCC 59.169 50.000 0.00 0.00 0.00 4.30
533 865 4.830600 CCCTCTGTCCTTCTCTAATACTCC 59.169 50.000 0.00 0.00 0.00 3.85
534 866 5.697067 TCCCTCTGTCCTTCTCTAATACTC 58.303 45.833 0.00 0.00 0.00 2.59
535 867 5.194942 ACTCCCTCTGTCCTTCTCTAATACT 59.805 44.000 0.00 0.00 0.00 2.12
536 868 5.451354 ACTCCCTCTGTCCTTCTCTAATAC 58.549 45.833 0.00 0.00 0.00 1.89
537 869 5.735733 ACTCCCTCTGTCCTTCTCTAATA 57.264 43.478 0.00 0.00 0.00 0.98
538 870 4.618378 ACTCCCTCTGTCCTTCTCTAAT 57.382 45.455 0.00 0.00 0.00 1.73
541 873 4.405756 TTTACTCCCTCTGTCCTTCTCT 57.594 45.455 0.00 0.00 0.00 3.10
585 917 1.327303 AGGCGGAGATTTGTGCAAAA 58.673 45.000 1.26 0.00 33.56 2.44
587 919 2.083774 CTTAGGCGGAGATTTGTGCAA 58.916 47.619 0.00 0.00 0.00 4.08
592 924 6.367422 GTCATAAGATCTTAGGCGGAGATTTG 59.633 42.308 19.85 9.85 34.13 2.32
595 927 5.329399 AGTCATAAGATCTTAGGCGGAGAT 58.671 41.667 19.85 5.52 36.60 2.75
597 929 6.207810 ACTTAGTCATAAGATCTTAGGCGGAG 59.792 42.308 19.85 17.40 40.86 4.63
598 930 6.069331 ACTTAGTCATAAGATCTTAGGCGGA 58.931 40.000 19.85 11.92 40.86 5.54
599 931 6.334102 ACTTAGTCATAAGATCTTAGGCGG 57.666 41.667 19.85 10.09 40.86 6.13
600 932 7.426410 TCAACTTAGTCATAAGATCTTAGGCG 58.574 38.462 19.85 11.39 40.86 5.52
601 933 9.771534 ATTCAACTTAGTCATAAGATCTTAGGC 57.228 33.333 19.85 15.08 40.86 3.93
614 946 8.846943 TTGCTAAATCTCATTCAACTTAGTCA 57.153 30.769 0.00 0.00 0.00 3.41
615 947 9.928236 GATTGCTAAATCTCATTCAACTTAGTC 57.072 33.333 0.00 0.00 39.36 2.59
651 983 3.139211 ACCTCCCAGAAAGAGAGCTTTTT 59.861 43.478 0.00 0.00 44.10 1.94
652 984 2.713708 ACCTCCCAGAAAGAGAGCTTTT 59.286 45.455 0.00 0.00 44.10 2.27
653 985 2.343625 ACCTCCCAGAAAGAGAGCTTT 58.656 47.619 0.00 0.00 46.62 3.51
654 986 2.037385 ACCTCCCAGAAAGAGAGCTT 57.963 50.000 0.00 0.00 35.37 3.74
655 987 2.037385 AACCTCCCAGAAAGAGAGCT 57.963 50.000 0.00 0.00 32.86 4.09
656 988 3.008049 TGTTAACCTCCCAGAAAGAGAGC 59.992 47.826 2.48 0.00 32.86 4.09
657 989 4.891992 TGTTAACCTCCCAGAAAGAGAG 57.108 45.455 2.48 0.00 32.86 3.20
658 990 6.271391 TGTTATGTTAACCTCCCAGAAAGAGA 59.729 38.462 2.48 0.00 32.86 3.10
659 991 6.472887 TGTTATGTTAACCTCCCAGAAAGAG 58.527 40.000 2.48 0.00 0.00 2.85
660 992 6.442541 TGTTATGTTAACCTCCCAGAAAGA 57.557 37.500 2.48 0.00 0.00 2.52
661 993 5.648092 CCTGTTATGTTAACCTCCCAGAAAG 59.352 44.000 2.48 0.00 0.00 2.62
662 994 5.311121 TCCTGTTATGTTAACCTCCCAGAAA 59.689 40.000 2.48 0.00 0.00 2.52
663 995 4.847512 TCCTGTTATGTTAACCTCCCAGAA 59.152 41.667 2.48 0.00 0.00 3.02
664 996 4.431378 TCCTGTTATGTTAACCTCCCAGA 58.569 43.478 2.48 0.00 0.00 3.86
665 997 4.770795 CTCCTGTTATGTTAACCTCCCAG 58.229 47.826 2.48 4.57 0.00 4.45
666 998 3.054655 GCTCCTGTTATGTTAACCTCCCA 60.055 47.826 2.48 0.00 0.00 4.37
667 999 3.054655 TGCTCCTGTTATGTTAACCTCCC 60.055 47.826 2.48 0.00 0.00 4.30
668 1000 4.216411 TGCTCCTGTTATGTTAACCTCC 57.784 45.455 2.48 0.00 0.00 4.30
669 1001 6.759497 AAATGCTCCTGTTATGTTAACCTC 57.241 37.500 2.48 0.00 0.00 3.85
670 1002 6.602009 GGTAAATGCTCCTGTTATGTTAACCT 59.398 38.462 2.48 0.00 0.00 3.50
671 1003 6.183360 GGGTAAATGCTCCTGTTATGTTAACC 60.183 42.308 2.48 0.00 0.00 2.85
672 1004 6.457799 CGGGTAAATGCTCCTGTTATGTTAAC 60.458 42.308 0.00 0.00 0.00 2.01
673 1005 5.587043 CGGGTAAATGCTCCTGTTATGTTAA 59.413 40.000 0.00 0.00 0.00 2.01
674 1006 5.104859 TCGGGTAAATGCTCCTGTTATGTTA 60.105 40.000 0.00 0.00 0.00 2.41
675 1007 3.945285 CGGGTAAATGCTCCTGTTATGTT 59.055 43.478 0.00 0.00 0.00 2.71
676 1008 3.199071 TCGGGTAAATGCTCCTGTTATGT 59.801 43.478 0.00 0.00 0.00 2.29
677 1009 3.804036 TCGGGTAAATGCTCCTGTTATG 58.196 45.455 0.00 0.00 0.00 1.90
678 1010 4.497291 TTCGGGTAAATGCTCCTGTTAT 57.503 40.909 0.00 0.00 0.00 1.89
679 1011 3.985019 TTCGGGTAAATGCTCCTGTTA 57.015 42.857 0.00 0.00 0.00 2.41
680 1012 2.871096 TTCGGGTAAATGCTCCTGTT 57.129 45.000 0.00 0.00 0.00 3.16
681 1013 2.871096 TTTCGGGTAAATGCTCCTGT 57.129 45.000 0.00 0.00 0.00 4.00
682 1014 5.124776 TGTTATTTTCGGGTAAATGCTCCTG 59.875 40.000 0.00 0.00 0.00 3.86
683 1015 5.258051 TGTTATTTTCGGGTAAATGCTCCT 58.742 37.500 0.00 0.00 0.00 3.69
684 1016 5.449999 CCTGTTATTTTCGGGTAAATGCTCC 60.450 44.000 0.00 0.00 0.00 4.70
685 1017 5.355910 TCCTGTTATTTTCGGGTAAATGCTC 59.644 40.000 0.00 0.00 33.44 4.26
686 1018 5.124936 GTCCTGTTATTTTCGGGTAAATGCT 59.875 40.000 0.00 0.00 33.44 3.79
687 1019 5.337554 GTCCTGTTATTTTCGGGTAAATGC 58.662 41.667 0.00 0.00 33.44 3.56
688 1020 5.416326 TGGTCCTGTTATTTTCGGGTAAATG 59.584 40.000 0.00 0.00 33.44 2.32
689 1021 5.572252 TGGTCCTGTTATTTTCGGGTAAAT 58.428 37.500 0.00 0.00 33.44 1.40
690 1022 4.983053 TGGTCCTGTTATTTTCGGGTAAA 58.017 39.130 0.00 0.00 33.44 2.01
691 1023 4.637387 TGGTCCTGTTATTTTCGGGTAA 57.363 40.909 0.00 0.00 33.44 2.85
692 1024 4.847990 ATGGTCCTGTTATTTTCGGGTA 57.152 40.909 0.00 0.00 33.44 3.69
693 1025 3.732048 ATGGTCCTGTTATTTTCGGGT 57.268 42.857 0.00 0.00 33.44 5.28
694 1026 4.743493 CAAATGGTCCTGTTATTTTCGGG 58.257 43.478 0.00 0.00 0.00 5.14
695 1027 4.173256 GCAAATGGTCCTGTTATTTTCGG 58.827 43.478 0.00 0.00 0.00 4.30
696 1028 3.851403 CGCAAATGGTCCTGTTATTTTCG 59.149 43.478 0.00 0.00 0.00 3.46
697 1029 4.621034 CACGCAAATGGTCCTGTTATTTTC 59.379 41.667 0.00 0.00 0.00 2.29
698 1030 4.279671 TCACGCAAATGGTCCTGTTATTTT 59.720 37.500 0.00 0.00 0.00 1.82
699 1031 3.823873 TCACGCAAATGGTCCTGTTATTT 59.176 39.130 0.00 0.00 0.00 1.40
700 1032 3.417101 TCACGCAAATGGTCCTGTTATT 58.583 40.909 0.00 0.00 0.00 1.40
701 1033 3.066291 TCACGCAAATGGTCCTGTTAT 57.934 42.857 0.00 0.00 0.00 1.89
749 1081 1.909806 TTTAGGGAGGGAGGGGGAGG 61.910 65.000 0.00 0.00 0.00 4.30
751 1083 1.399057 GTTTAGGGAGGGAGGGGGA 59.601 63.158 0.00 0.00 0.00 4.81
752 1084 1.696674 GGTTTAGGGAGGGAGGGGG 60.697 68.421 0.00 0.00 0.00 5.40
753 1085 1.696674 GGGTTTAGGGAGGGAGGGG 60.697 68.421 0.00 0.00 0.00 4.79
754 1086 0.694783 GAGGGTTTAGGGAGGGAGGG 60.695 65.000 0.00 0.00 0.00 4.30
755 1087 0.694783 GGAGGGTTTAGGGAGGGAGG 60.695 65.000 0.00 0.00 0.00 4.30
756 1088 1.049289 CGGAGGGTTTAGGGAGGGAG 61.049 65.000 0.00 0.00 0.00 4.30
757 1089 1.002533 CGGAGGGTTTAGGGAGGGA 59.997 63.158 0.00 0.00 0.00 4.20
758 1090 2.743179 GCGGAGGGTTTAGGGAGGG 61.743 68.421 0.00 0.00 0.00 4.30
759 1091 1.689582 AGCGGAGGGTTTAGGGAGG 60.690 63.158 0.00 0.00 0.00 4.30
760 1092 1.265454 ACAGCGGAGGGTTTAGGGAG 61.265 60.000 0.00 0.00 0.00 4.30
761 1093 0.838987 AACAGCGGAGGGTTTAGGGA 60.839 55.000 0.00 0.00 0.00 4.20
801 1133 5.326069 AGACTGTGAGATACAACTACCACT 58.674 41.667 0.00 0.00 39.20 4.00
802 1134 5.183331 TGAGACTGTGAGATACAACTACCAC 59.817 44.000 0.00 0.00 39.20 4.16
847 1179 2.568979 AGGGTTAGGTGGGAATAGCAA 58.431 47.619 0.00 0.00 0.00 3.91
863 1195 1.240337 TATGGGGGTGGGAGTAGGGT 61.240 60.000 0.00 0.00 0.00 4.34
882 1214 1.929806 TATCGTCGTGCTTCCGTGCT 61.930 55.000 0.00 0.00 0.00 4.40
964 1296 7.104939 CAGAGGTCAAGAGATGAAAGAGAAAT 58.895 38.462 0.00 0.00 40.50 2.17
979 1313 4.096984 ACTTGTTTTCTTGCAGAGGTCAAG 59.903 41.667 13.74 13.74 41.57 3.02
1063 1397 5.349817 CGACTCATGAAACTAGCTGACATTT 59.650 40.000 0.00 0.00 0.00 2.32
1064 1398 4.867047 CGACTCATGAAACTAGCTGACATT 59.133 41.667 0.00 0.00 0.00 2.71
1066 1400 3.838120 CGACTCATGAAACTAGCTGACA 58.162 45.455 0.00 0.00 0.00 3.58
1077 1411 2.432206 TCTCGTTTGCGACTCATGAA 57.568 45.000 0.00 0.00 42.81 2.57
1086 1420 4.791163 TCTGTTTTCTTTTTCTCGTTTGCG 59.209 37.500 0.00 0.00 39.92 4.85
1130 1464 0.106769 TCCCACTGCAGTTTCAAGCA 60.107 50.000 18.94 0.00 39.25 3.91
1255 1593 2.496070 CCGTCAGTCAAGGATTCTGGTA 59.504 50.000 0.00 0.00 0.00 3.25
1314 1655 0.040958 GCCTGCACGTTGAAGAACTG 60.041 55.000 0.00 0.00 0.00 3.16
1511 1859 1.009389 CAACGTCTCTTGTCGGAGGC 61.009 60.000 0.00 0.00 34.90 4.70
1523 1871 4.929808 GTCAGAAACATATGACCAACGTCT 59.070 41.667 10.38 0.00 39.94 4.18
1564 1912 2.032528 CTCCACCGGAGCTGCAAA 59.967 61.111 9.46 0.00 43.29 3.68
1611 1961 0.108329 CGTACTGCGACCCCTTGATT 60.108 55.000 0.00 0.00 44.77 2.57
1991 2365 8.026026 TGACTTATCGATTTATTGCAAAAGCAA 58.974 29.630 1.71 5.28 0.00 3.91
2040 2423 0.327259 AAAGGACCGGTAAGGCTTCC 59.673 55.000 7.34 1.66 46.52 3.46
2148 2538 6.045318 GTGCATCTTAGTTATGAGAGAGCAA 58.955 40.000 0.00 0.00 37.59 3.91
2149 2540 5.127682 TGTGCATCTTAGTTATGAGAGAGCA 59.872 40.000 0.00 0.00 35.24 4.26
2155 2546 6.108687 TGGTTCTGTGCATCTTAGTTATGAG 58.891 40.000 0.00 0.00 0.00 2.90
2207 2609 8.420374 TTCATGAATACTTGTATTCCGTCTTC 57.580 34.615 22.91 6.22 36.02 2.87
2231 2633 7.936847 TGGTTTATGTGTCATACAGTCTCTTTT 59.063 33.333 0.00 0.00 43.80 2.27
2232 2634 7.450074 TGGTTTATGTGTCATACAGTCTCTTT 58.550 34.615 0.00 0.00 43.80 2.52
2250 2652 2.938428 TTGGCCCTCCAATGGTTTAT 57.062 45.000 0.00 0.00 46.89 1.40
2276 2678 1.949525 GACATGGATGGCAGCGTAATT 59.050 47.619 0.00 0.00 35.34 1.40
2279 2681 1.227234 CGACATGGATGGCAGCGTA 60.227 57.895 0.00 0.00 34.77 4.42
2281 2683 3.274586 CCGACATGGATGGCAGCG 61.275 66.667 0.00 0.00 42.00 5.18
2315 2718 5.753438 GTCTGTACACACTTGAAGAACATGA 59.247 40.000 0.00 0.00 0.00 3.07
2337 2740 2.758979 TCGAGAGGTGTTTATGGAGGTC 59.241 50.000 0.00 0.00 0.00 3.85
2351 2754 3.127203 ACAACACGTAGAGAATCGAGAGG 59.873 47.826 0.00 0.00 42.67 3.69
2352 2755 4.343811 ACAACACGTAGAGAATCGAGAG 57.656 45.455 0.00 0.00 42.67 3.20
2364 2767 6.240665 CGTTTATAGTCGTCTACAACACGTA 58.759 40.000 11.52 0.00 38.45 3.57
2381 2786 3.944650 TGTACTGGTACGCTCCGTTTATA 59.055 43.478 6.44 0.00 41.54 0.98
2537 2943 8.439993 TTTGCTAATATATTTGGCAACTCGTA 57.560 30.769 24.88 14.80 41.58 3.43
2562 2968 3.798515 TCCTTGTACCCTCCACATAGTT 58.201 45.455 0.00 0.00 0.00 2.24
2575 2981 6.713450 TCATCCAAGTAGGTTTTTCCTTGTAC 59.287 38.462 0.00 0.00 45.67 2.90
2582 2988 5.181433 GGTCAGTCATCCAAGTAGGTTTTTC 59.819 44.000 0.00 0.00 39.02 2.29
2583 2989 5.070685 GGTCAGTCATCCAAGTAGGTTTTT 58.929 41.667 0.00 0.00 39.02 1.94
2585 2991 3.650942 TGGTCAGTCATCCAAGTAGGTTT 59.349 43.478 0.00 0.00 39.02 3.27
2588 2994 5.815233 ATATGGTCAGTCATCCAAGTAGG 57.185 43.478 0.00 0.00 37.27 3.18
2684 3093 9.294030 CCTTATTAAGAGCAATTGACATGAAAC 57.706 33.333 10.34 0.00 0.00 2.78
2719 3128 6.053650 TCTTCGTCGAGGAGTCATTCTTATA 58.946 40.000 7.98 0.00 0.00 0.98
2770 3179 7.888250 AAGGATTTGAAAGATGAAGATACCC 57.112 36.000 0.00 0.00 0.00 3.69
2792 3204 7.867403 ACAGGTGCAAGTTGATAACAATAAAAG 59.133 33.333 7.16 0.00 38.32 2.27
2800 3212 3.815401 AGTCACAGGTGCAAGTTGATAAC 59.185 43.478 7.16 1.16 0.00 1.89
2810 3222 0.322648 CTGATCCAGTCACAGGTGCA 59.677 55.000 0.00 0.00 32.22 4.57
2849 3261 2.093152 ACGTGAATGGTAAATTCGTCGC 59.907 45.455 12.09 0.00 34.22 5.19
2851 3263 4.657075 ACACGTGAATGGTAAATTCGTC 57.343 40.909 25.01 0.00 0.00 4.20
2852 3264 4.628333 CCTACACGTGAATGGTAAATTCGT 59.372 41.667 25.01 0.00 0.00 3.85
2853 3265 4.628333 ACCTACACGTGAATGGTAAATTCG 59.372 41.667 25.01 0.00 0.00 3.34
2900 3312 2.922740 TCCAAGGTACAACTGTCACC 57.077 50.000 0.00 0.00 0.00 4.02
2915 3327 9.436957 GAACACTTTCTAATTGAGACTATCCAA 57.563 33.333 0.00 0.00 32.31 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.