>input_sequence_64302
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-----------------------------------------------------AGTAAGCCTGTCCAGCTCTACTCTCAT
TTCTGCTCTTTTTGTTTCAAACAAATTTTAACACGCAAATGTCAGCTAGTTTCATGAGTCGCAAACGAGAAAAAGAAAAC
AGAGTCAGCTTTTGATCGAATTTTGCTTGA----AACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGCCGCCAAGACGCTCTCGCTCGTCGGCCATGGCAAGTACCAGAA
TCCTTGACTGACGGAACGGATACGAATGCATCATTTT---TTTTTTACGAAAGTCAGTT-------CTTCAACGTGCAGG
CGTCACGGACATTGAGATCCACTTCCTTCAGATCAAGTTCAACGCCATCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCATTGGTCTCCGGTGAGACG
ATGGATGGGTGATAATCGGCCTCCGACAAGAGACGTTGGTCATATGTTTCTGACACGATGTTGCGCGTGCATTT--GCAG
CTCCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAAATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCC
GTCAGGGACCGCCTCGTGGCGGCGGACAAATACGAGGACGAGGAGGAGGAGGCGCTCGAGAAGGTCTCGGACTTCTTCCA
GTCCAAGTACTTCAGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGGCCACCGCCGCGCCAGAGATATCGTTCG
TGACAGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAAAGGTGGTACCTCGGC
GGCGATTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCTCCTCACCATGA-----
--------------------------------------------------------------------------------
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------------------
>chr5D_1_TraesCS5D01G145400
TTGTGTTGGTAAAAGAGAACGAAGATAAGAGTACA--GTGGTAGCTTAACATCCATTAGCTCTAAAAAGCAGC----TAT
AATAATAATTGCAGACCAGTACTTGACATTAGAAAGGGTGTCTGGATCATGTTAGGTTGTTGTAGAGGCCACGTCCGACT
TTGATTGCAGGGAGAGAGCGGACGTTCCAACAAATTTCGGAATGGAATGCGTCCCAGCGACCTGTCCCCGTGCTCGCTAA
CCCT---------CTAGACCTTACGCTGTGTCCGCTTTCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTACGGAAAAAAG---------------------------------------------------------
------------------------------AAAAAGGCAATTGTGGATGCAGAAAGATGCTAGCAAGTAGTAGTACGCAG
TAAAAAGAGGAGCAAATAACAGCCCCCTCAAAGCTTATCTCAAAAGGAAGAGAGCGTGGCTACCAAGTCTTAGTCAAGCG
ACATAACATTTACTCCCTTATAGTGCTGAAAATGTTATTAGTACTTCCTCCGTCCCAAAATTTTTGTCTTAGACTTGATA
CATCCGT--------------------ATCTAGACAAATTTAAGACGAGAATTTTAGGACAGAGGGAGTATTAGAGAAGG
ACAGAGGGAGTAAAAAAGAATAAAAAACAACATTTTTTTTGCACAAATCTCCGCCTAAGATCTTATGACTAAGTTGAATG
AGATTTAGCAATCTCAAAAGAAAAAAAGCTCTCTTTCTGGGAGGTTAACATAACAGGAGCATTTACCCGAAAATAACAGG
ACCATTTGCGTGAACGATTGTTGACCACGAGATGCACCTACCTCCCCCTCCCTCCCTAAACCCTCCGCTGTTTGTTTGGA
CGCTTACTTCAGAGTGGTAGTTGTATCTCACAGTCTCAGTACAGCCACATGTCCACTCTTGCTATTCCCACCTAACCCTA
CTCCCACCCCCATAGCACGGAAGCACGACGATAAAACGCCCACGCTCTTCCATCTCTGCCATAACAAACGCAAAGCTGCT
CCATCATCTTCCTCTA--TTTCTCTTTCATCTCTTGACCTCTGCAAGAAAACAAGTAAGCCTGTCCAGCTCTACTCTCAT
TTCTGCTCTTTTTGTTTCAAACAAATTTTAACACGCAAATGTCAGCTAGTTTCATGAGTCGCAAACGAGAAAAAGAAAAC
AGAGTCAGCTTTTGATCGAATTTTGCTTGA----AACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGCCGCCAAGACGCTCTCGCTCGTCGGCCATGGCAAGTACCAGAA
TCCTTGACTGACGGAACGGATACGAATGCATCATTTT---TTTTTTACGAAAGTCAGTT-------CTTCAACGTGCAGG
CGTCACGGACATTGAGATCCACTTCCTTCAGATCAAGTTCAACGCCATCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCATTGGTCTCCGGTGAGACG
ATGGATGGGTGATAATCGGCCTCCGACAAGAGACGTTGGTCATATGTTTCTGACACGATGTTGCGCGTGCATTT--GCAG
CTCCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAAATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCC
GTCAGGGACCGCCTCGTGGCGGCGGACAAATACGAGGACGAGGAGGAGGAGGCGCTCGAGAAGGTCTCGGACTTCTTCCA
GTCCAAGTACTTCAGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGGCCACCGCCGCGCCAGAGATATCGTTCG
TGACAGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAAAGGTGGTACCTCGGC
GGCGATTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCTCCTCACCATGATTCTT
TTTTT------------------------ACAAGTGCTGCTTACTTGCTTTTGCAATAAATCGATAAGTCATGATA----
-----AAAAAACACTTGGTGGCGGAAGCCTTACCGGTCCTTTGGCAACTCGATCCAA-CGCTGTACATCAAATCATTTCC
AAATTTTTGG-ATAAAGGGCACTTTATTATATA-----AAAGATTTAAGTATTACATT-TGCTCTCTCATAACTAAGATG
CACAGAACCAAA-CTA-AATCCAATCTCA------AAAAG---AAAAAGAAGACGGAATACAAGTATTCATGAAAAGAGA
CTGTATGACACATAAACCATTGGAGGGCCAATCCTAAAATTACGCTGCCATCCATGTCGGGTAAAAGTATTCCTCG-TCA
TGTTCTTCAAGTGTGTACAGACCTCCATAAACACCTCTCGATTCTCTACGTGTTGTAGA--CGACTATAAACGGAGCGTA
CCAGTACATCTGTAGATAACCTACAAAAGAGAAGTACTTTTGTCATTAAATACCTTATCATTTCTACATAGCCAGAGCGA
CCAAATAACGGCAAGCGCTCCCACCCCGAAAAGAATTCTAGACCTATACTCTAT-CCCATGTTACGAGTTGCCAAATATA
TTAGCAAAACTATGTGGAGGGTACAAGGAAAAACCTACTTGGATGACTGACCATATAGAATGAGCCAATTTGCATTGGAA
AAACA--AGTGTTTTATTGTTTCGCCATGATGA-TAAAAAACACATTGTGTAGTTTCATGTCAATTGCTCTTAATAAGGT
TGTCCTTTATAAGAATGACTCCTCGACGAAGATACCACACAAAGATTTTATTCTTAAAGGGTATCTTCATCTTTCAAA--
-TCCTTTTATTGTTATCAACTTGCACCTGTGACTGGATCAGAGCACTATACATAGAATCCGCGACGAATTTACCATTCAC
GTGTAGGTTCCACCAAAATTCATCAGCTCCTGGTGACAGTTGTACCTTGGATAGTCTCAATTAGAAAGTGTTCCACGATT
CAGGTCTGGGCCAATTA-
>chr5A_1
TTGCGTTGGTAAAAGAGGAGGAAGATAAGAGTACACGGTAGTAGCTTAACATCTCTCTAAAGGCTAAGTAGTAGTAGTAT
GATAATAATTGCATACCAGTACTTGA-ATTAGAAAGGGTGGCTGGATCATGTTAGGTTGTTGTAGAGGCCACGTCCGATT
TTGATTGCAGGGAGTG---GGACTCTCCAACAAATTTTGGAAAGGAATGGAAT-----GACCTGCCTCTGTGCCCACTAA
CCCTGCACGCCTTCTACACCTTACCCTGTCCCCGCCTTATATACGAAAAAACAAAAAGACAATGGTGGATGCAGGAAGAT
GCTAGCAAGTACGGTTTAAGCTCCATCGCAAAATGCGTGTCTTAGATTTATCCAGATACAGAGGTTGTATCTTGTACACC
TTACCTTGTCTCTGCAAAATGCTTGTCTTAGATTTAAACAGATGGGGTGTTGTATCTTCTAAACCTTACCCTGTCCTTGC
ATTGCCTTCTGTACGAAAAAACAAAAAGGCAATGGTCGATGTTGTATCTTCTACACCTTACCCTGTCCCTGCAAAATGCT
TGTCTGTCCCTGCCTTCTATACGAAGAAACAAAAAGGCAATAGTAGATGCAGAAAGATGCTAGCAAGTAGG---------
--------------------------------------------------------------------------------
---------------------------------------AGTATTACCCTCATCCCAAAAATCTTGTTTTACATTTGTCT
AGATACAGATATATCTAACACTGAAACATCTAGACAAATCTAACCTCTGTCTCAAATCACCTGTCTTAAGTTTGTTTA--
-------GATAAAAGATGTATCTAACACTAAAACGTGTCTGCATAAGTAGAAAAATCTAAAACAAATAATCAGAAACGGA
GGGAGCACGTAGTAAAAGGAGA----------------------------------------------------------
ACCATTTGCGTGAACGATTGTTGACCACGAGATGCACCTAACC----------CCCTAAACCCTCCGCTGTTTGTTTGGA
CGCTTACTTCAG--TGGTAGTTGTATCTCACAGTCTCAGTACAGCCACATGTCCACCCCTGCTATTCCCACCTACCCCTA
CT-CCACCCCCATCGCACGGAAGCACGACGATAAAACGCCCACACTCTTCCATCTCTGCCATAACAAACGCAAAGCTGCT
CCATCAACTTCCTCTTTGTTTCTCTTTCATCTGTTGACCTCTGCAAGAAAACAAGTAAGCTTCTCCAGTTCTACTCTTAT
TAAC---------------------------------------------TATCATGAGT---------GAAAAAGAAAAT
ATATTCAGCTTTTGATCGAATTTCGCTTG-----AACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGGCGCCAAGGCGCTCTCGCTCGTCGGCCATGGCAAGCACCAGAA
TCCTGGACTGACGAAACCGATACGAATGCATCTTTTTTTATTTTTGACGAAAGTAAGTT-------CTTCAACGTGCAGG
CGTCACGGACATTGAGATCCACTTCCTTCAGATCAAGTTCAACGCCGTCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCCCTGGTCTCCGGTGAGACG
ATGGATGCATGACAATCGACCTCCGACAAGTGACGTTGGTCATATGTTTCTGACACGATGTTGCGCGTGCA--T--GCAG
CTCCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAGATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCC
GTCAGGGACCGCCTCGTGGCGGCGGACAAATACGAGGACGACGAGGAGGAGGCGCTCGAGAAGGTCTCCGACTTCTTCCA
GTCCAAGTACTTCAGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGCCCACCGCCGCGCCAGAGATAACGTTCG
TGACAGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAGAGGTGGTACCTCGGC
GGCGAGTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCTCCTCACCATGATTCTT
TTTTTTGAGGGCACCATGATTCTTTTTTTACAAGTGCTGCTTACCTGCTTTTGCAATAAATCGATAAGTCACGATGAAAT
ATTTCAAAAAACACTTGCTGGC-GAAGCCTTACCGGAACTTTGGCAAGTCGATCCAA-CGCTGTACATCCAACCATTTCT
AATTTTTTCG-ATAAAGAGCACTTTATTATATAGAGTAAACGATTTAAGTATTACATC-CGGTCTTTCATAACTAAGATA
CACA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------
>chr5B_703
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TAACAGG
ACCATTTGCGTGAACGATTGTTGACCACGAGATGCACCTAACC----------CCCTAAACCCTCCGCTGTTTGTTTGGA
CGCTTACTTCAG--TGGTAGTTGTATCTCACAGTCTCAGTACAGCCACATGTCCACTCCTGCTATTCCCACCTACCCCTA
CTCCCACCCCCATCGCACGGAAGCACGACGATAAAACGCCCACGCTCTTCCATCTCTGCCATAACAAACGCAAAGCTGCT
CCATCATCTTCCTCTTTGTTTCTCTTTCATCTGTTGACCTCTGCAAGAAAACAAGTAAGCCTGTCCAGCTCTACTCTCAT
TTCTGCTCTTTTTGTTTCAAACAAATTTTAACACGCCCAGGTCAGCTAGTATCATGAGTGGCAAACGAGAAAAAGAAACC
AGAGTCAGCTTTTGATCGGATTTCGCTTGAAATTAACTGCAGTGGGATCGGAGCAGGAGAAGAAGGCCGCCGCCACGGTG
GAAGTGGAAGGCATCCCGTTCCCGCGGGAAATCGCCGGCGCCAAGACGCTCTCGCTCGTCGGCCATGGCAAGCACTAGAA
TCTCTGACTGAA-GAACAGACACGAACGAATCATTTT---TTTTTTTTTGACACAATCAAGTTCAACTTCAACGTGCAGG
CGTCACAGACATTGAGATCCATTTCCTTCAGATCAAGTTCAACGCCATCGGGGTCTACCTCGACGTCGACGGCGCCATGG
AGCATCTGCAGGGCTGGAAGGGGAAGAGCCAGCTGATGGAGGACGAGGCTTTCTTCGACGCCCTGGTCTCCGGTGAGACG
ATGGATGGATGATAATCGACCTCCAACAAGTGACGCTGGTCATATGTTTCTGACACGATGTTGCGCGTGCA--TTTGCAG
CTCCGGTGGAGAAGGTGCTGAGGGTGGTGGTGATCAAGGAGATCAAGGGGTCGCAGTACGGCGTGCAGCTCGAGAGCTCC
GTCAGGGACCGCCTCGTGGCAGCGGACAAATACGAGGACGACGAGGAGGAGGCGCTCGAGAAGGTCTCCGACTTCTTCCA
GTCCAAGTACTTCCGGCCCGGCTCCGTCGTCACCTTCCACTTCCCGGCCACGGTCACCGCCGCGCCAGAGATATCGTTCG
TGACGGAAGGCAAGGAGGAGGCCAAGGTGGCGGTGGAGAACGCGGCCGTGGCGGAGATGATCCAGAGGTGGTACCTTGGC
GGCGATTCGGCGGTGTCGCAGACCACCGTCAGGAGCATCGCTGATAGTTTCGCGGCAATGCTCACCTCACCATGATTCTT
TTTT------------------------TACAAGTGCTGCTTACCTGCTTTTGCAATAAATCGATAAGTCACGATGAAAT
ATTTCAAAAAACACTTGCTGGC-GAAGCCCTACCGGTCCTTTGGCAACTCGATCCAAACGCTGTACAAATTA----TTTC
TAAAATTTTC-ATAAATAACACTTTATTATTTA-----AA---------TATTACACCCGGTCTCTGAATAATTAAGATG
CACACGGCCAAA-TCA-AATTCAGTCTCA------GAAAGAGAAAAAAAAGGACAAAATACAGGTATTCATG--AAGAGA
CTGGATGACGCCTAAACCGTTGAAGGGCCAATCCTAATATCATGCTACCATCCATGTGGGGTAGAAGTA-----------
-GTTTTCTAAGCGTGTACACATATCTGTAAACAAGACTCGATTCTTCACACATTGTAGAGACGAGCATA----GAGCGTA
CTGGTACATCTGTAGATAACCTGCAAAAGGGAAGTACTTTTATGGTTAAATACCTT--------------GCCAAAGCGA
CCAAATAACAACAAACGCTCCCATCATGAGAAGAATTTTAAACCTGTACTTTAT-CCCATGTAACCAGTTGTCAAATATA
TTAGCAACACTACCTGAAGGATACAAGCCAGAAACTACTTGGATGACTAACCATATAAAACGAGCCAATTTGCATTGGAA
AAC---AAGTGTTTTATTGTTTTGTCGTGATGA-CAAAA-ACACATTGCGTACTTTCATGCCAATTCTTCTTAATAAGGT
TGTACTTGGTAAGAATGACTTCTCGACGAAGATACCACGCAAAGATTTTATTCTTAAGCGGTATCATCATCTTCTAAA--
-TCTTCTTATTCTTATCAACTGGCACATGTGACTAGATCAAAGCACTATACATATAATCCACTGTGAATTTACCATTCAC
GTGTAGGTTCCACTGAAATTCATCGGCTCCCAGTAACAGTAGTACCGTGTATAGTCTTAGTAACAAAGTGTTTCACGACT
CAAGTCTAGGGCCAATTA
>chr1D_2092
ATATCC--------------------------------------------------------------------------
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-ATATTTTCG-AAAAGGGGTGCTTTATTACTTA-----AGAGATTTAAGCATTACACCCGGCCTCTGCATTACTAAGATG
CACACAGCCAAA-AAA-AGTCTTCTCACACAAATGAAAAA---TAAA--AAGGCGAAATACAA--AAACATG--AAGAGT
CTGTATAACGCCTAAAGCGGAGGGTGGTCAATCCTAATATCATGCTGCCACCCATGCTGGGTAAAAGTATTCCTCG-CCG
TAGCCTCCAATCGTGTACACACCTCCGTAAACAGGTCTCGATTCTCCACGCGTTGTAGAGAGGACCATAAACGAAGAGTC
CCGGTACATCTGTAGATAATCTGCATCAGGGAAGTACTTTTATCGTTAAAAACCTTATCATTTCTACATAGCCAAAGCGA
CCAAATAACGGCAAGCGCTCCCATCTTGAGAAAAGTTCTAAACCTGTGATCAAT-CCCATGTAACCAGTTGCCAAATACA
TTAGCAACACTACAAGGAGGATACAAGCCAGAAGCTATTTGGATGACTGACCATATAGAACGAGCCAATTTGCATTGGAA
GAATATAAATGTTTTATTGTCTCATCATGGTGA-CAAAAGACACATTGCGGACTTTCATGCCAATTCCTCTTAATAAGGT
TATCTTTAGTAAGAATGACTCCGCGACAAAGATACCATGCAAAGATTTTATTCTT--GAGGTATCTTCATCTTCCAGA--
-TCTTATTATTATTATCAACTGGCACATCAGACTGGATTAACGCTCTATACATGGAATCTACTGAGAATTTTCCATTCCC
ATGAAGGTTCCATCGAAATACATCAGACCCATGTGACAGGTGCACCATGGA-----------------------------
------------------
>chr7D_2098
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AATTTTTTCG-AAAAGGGGCGCTTTATTACTTA-----AAAGATTTAAGCATTACACCCGGCCTCTGCATTACTAAGATG
CACACAGCCAAA-AAAATGTCTTCTCACACAAATGAATGA---TAAA--AAGGCGAAATACAA--AAACATG--AAGAGT
CCGTATAACGCCTAAAGCGGAGGGGGGTCAATCCTAAGATCATGTTGCCACCCATGTTGGGTAAAAGTATCCCTCG-CCG
TAGCCTCCAATCGTGTACACACCTCCGTAAACAGGTCTCGATTCTCCACCCGTTGTAGAGAGGACCATAAACGAAGAGTC
CCGGTACATCTGTAGAGAACCTACATCAGGGAAGTACTTTTATCGTTAAAAACATTATCATTTCTACATAGCCAAAGCGA
CCAAATAACGGCAAGCGCTCCCACCCTGAGAAAAGTTCTAAACCTATGATCAAT-CCCGTGTAACCAGTTGCCAAATACA
TTAGCAACACTACAAGGAGGATACAAGCCAGAAGCTATTTGGATGACTGACCATATAGAACGAGCCAATTTGCATTGGAA
GAATA--AATGTTTTATTGTCTCATCATGGTGA-CAAAAGACACATTGCGGACTTTCATGCCAATTCCTCTTAATAAGGT
TATCTTTAGTAAGAATGACTCCGTGACGAAGATACCATGCAAAGATTTTATTCTTAAGAGGTATCTTCATATTCCAAA--
-TCTTCTTATTATTATCAACTGGCACATCAGACTGGATTAGCGCTCTATACATGGAATCCACTGAGAATTTTCCATTCCC
ATGAAGGTTCCACCGAAATACATCAGACCCATGTGATAGGTGCACCGTGGACAACCGCTGGAGCAGGATGTTCCACGATT
GAAGTCTAGGTCCAATTA
>chr5D_2100
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--ATTTTTTG-ATAAAGGGCGGTTTATTACTTA-----AAAGGTTTAAGCATTACACCCCGCCTCTGCATAACTGGGATG
CACACAACCATAACCA-AGTCCAACTT--CCGAAAAAATGG----AA--AACGTGAAATACAAGTAATCATG--TGGAGA
CTGTATAACGCCTAAGATGTTGGAGGGCCAATCCGAAGATCATGCTGCCATCCATGTCGGGTAAAAGTATCCCTCG-CCG
TGGCCTCCAAGCGTGTACACACCTCCGTAAACATGCCTCGATTCTCCACATGTTGTAGAGAAGACCATAAACGAAGCGTA
CTGGTACATCTGTACATAACCTGCAGAAGACAAGAACTTTTATCATTAAAAACTTTATCATTTCTACATAGCCAGAGCGA
CCAAATCACGGCAAGCGCTCCCACCCTTAGAAGAATTCTAGACTTGTTATTGAT-CCCATATAACCAGTTGCCAAACATG
TTAGCAACACT-----GAGGATACAAGCCAGAAGCTACTTGGATGACTGACCATATAGAACAAGCCAATTTGCATTGAAA
GAACA--AGTGTTTTATGGTCTCATCATGGTGA-CAAAA-ACACATTGTGTGCTTCCATGCCAATTCCTCTTAATAAGGT
TATCTTTGGTAAGAATGACTCCTCGACGAAGATATCACGCAAAGATTTTATTCTTGAATGGTATCTTCATCTTCTAAA--
-TCATTTTATTATTATCAATTGGCGCATCTGACTGGATCAAGGCTCTATACATGGACTCCACCGAGAAATTACCACTCAT
GTGTAGGTTCCAATGAAATACATCG-TCCCTTGTGACAATT---------------------------------------
------------------
>chr5D_2100
--------------------------------------------------------------------------------
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--ATTTTTTT-ATAAAGAATGCTTTATTACGTA-----AAAAATTTAAGTATTACACCCAGCCTTTGTATAACTGTGATG
CACACAACCAAA-CCA-AATCCGGTTTCA------AAAAG---TAAA--ATGACGAAATACAAGTACTCATG--AAGAGA
CTGTATGACACCTAA-CCGTAGGAGAGCCAATCCTAAGATCATGCTGCCATCCATGTCAAGAAAAAATA-TCCTCA-CCG
TGTTCTCTAAGCGTGTACACACCTCCGTAAATAGATCTCGGTTTTCCACACATTGAAGAGACGACCATGAATGGAGCATA
CCGGTACATCTGTAGATAACCTGTATAAGACAAGTACTTTTATCGTTAAAAACCTTATCATTTCTATATAGCCAAAGCGA
CCAAATAACGACAAGCGCTTCCATTCTGAGAAGAATTCTAAACATGTACTCTAT-CCCATGTAACTAGTTACCAAATATA
TTAGCAACACTACGTGGAGCATACAAGTCAGAAGCTATTTGAATGACTGACCATATAGAATGAGCCAATTTGCATT-AAA
AAATA--AGTGTTTTATTGTTTCATCATGATGA-CAAAATACACATTGCGTACTTCCATGCCAATTCCTCTTAATAAGGT
TATCTTTGGTAAGAATGACTCCACAACGAAGATACCACGCAAAGATTTTATTCGTAAGAGGTATCTCCATCTTCCAAA--
-TC---TTATTATTATCAGCTGGCACCTCTGACTAGATTAGAGCACTATACATAGAGTCTACCGTGAATTTACCATTCAT
GTGTAG--------------------------------------------------------------------------
------------------
>chrUn_2100
ATTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------TG-ATAAAGGGTTCTTTATTACTTA-----AAAGGTTTAAGCATTACACC-GGCCTCTGCATAATTGAGATG
CACAGCCA---AACCA-AGTCCGGGCT--CCAAAAAAATC---AAAA--AAGGCGGAATACAAGTAATCATG--TGAAGA
CTATATAACGCCTAAGACGTAGGAGGGTCAATCCGAAGATCATGCTGCCATCCATGTCGGGTAAAAGTATCCCTCG-C-G
TGGCCTCCAAGAGTGTGCACACCACCGTAAACAGGTCTTGATTTTCCACATGTTGTAGAGATGACCATAAACGGAGTGTA
CC-GTACATCTATAGATAACCTGTAGAAGAGAAGAACTTTTATCATTAATAACATTATCATTTCTACAT-GCCAAAGCGA
CCAAATCGCGGCAAACGCTCTCACACTGAGAAGAATTCTAAACTAGTTATTGAT-CCCATGTAACCAGCTGCCAAAAATA
TTAGCAACACTATGTGGAGCATACAAGCCAGAAGCTACTTGGATGACTGACCATATAGAACGAGCCAATTTGCATTCGAA
GAATA--AGTGTTTTATAGTCTCATCATGGTGA-CAAAAAACACATTGCGCACTTCCATGCCAATTCCTCTTAATAATGT
TATCTTTGATAAGAATGACTCCTCGACGAAGATACCACGCAAAGATTTTATTCTTGAGAGGTGTCTTCATGTTCCAAA--
-TCATTTTATTATTATGAACTGGAATATCTGACTGGATCAGCGCTCTATGCCTGGACTCCACCGAGAAATTACCACTCAC
GTGTAGGTTCCAACGAAATACATCAGTCCCTTGCGACAATTGCACCGTGGATAGACGTTGTACCAAGGT-TTCCATGATT
CAAGTCTAGGACCAATTA
>chr2D_2101
--------------------------------------------------------------------------------
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---TTTTTCG-AAAAGGGGCGCTTTATTACGTA-----AAACATTTAAGCATTACACCCGGCCTCTGCATTACTAAGATG
CACACAGCCAAA-AAA-TGTCTTCTCACACAAATGAATGA---TAAA--AAGGCGAAATACAA--AAACATG--AAGAGT
CCGTATAACGCCTAAAGCGGAGGGGGGTCAATCCTAAGATCATGTTGCCACCCATGCTGGGTAAAAGTATCCCTCG-CCG
TAGCCTCCAGTCGTGTACACACCTCCGTAAACAGGTCTCGATTCTCCACGCGTTGTAGAGAGGACCATAAACGAAGAGTC
CCGGTACATCTATAGAGAACCTGCATCAGGGAAGTACTTTTATCGTTAAAAACCTTATCATTTCTACATAGCCAAAGCGA
CCAAATAACGGCAAGCGCTCCCACCCTGAGAAAAGTTCTAAACCTGTGATCAAT-CCCGTGTAACCAGTTGCCAAATACA
TTAGCAACACTACAAGGAGGATACAAGCCAGAAGCTATTTGGATGACTGACCATATAGAACGAGCCAATTTGCATTGGAA
GAATA--AATGTTTTATTGTCTCATCATGGTGA-CAAAAGACACATTGCGGACTTCCATGCCAATTCCTCTTAATAAGGT
TATCTTTAGTAAGAATGACTCCGCGACGAAGATACCATGCAAAGATTTTATTCTTAAGAGGTATCTTCATCTTCTAGATC
TTC---TTATTATTATCAACTGGCACATCAGACTGGATTAGCGCTCTATACATGGAATCCACTGAGGATTTTCCATTCCC
ATGAAGGTTCCACCGAAATACATCAGACCCATGTGATAGGTGCACCGTGGA-----------------------------
------------------
>chr6D_2101
--------------------------------------------------------------------------------
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---TTTTTTGAAAAAGGGGTGCTTTATTACTTA-----AAAGGTTTAAGCATTACACCCGGCCTCTGCATAACTATGACG
CACACGGCCAAA-CAA--GTCCTCTCACACAAACGAAAAT---TAAG--AAGGCGAAATACAAAGAAACATG--TAGAGT
CTGTATAACGCCTAAAGCAGAGGTGGGCCAATCCTAAGATCATGCTGTCACCCATGTTGGGAAAAAGTATACCTAGAC-G
TATCCTCCAATCATGTACACACCTCCATAAACAGGTCTCGATTCTCCACATGTTGTAGAGAGGACCATAAACGAAGAGTC
CCGGTACATCTGTAGATAACCTGCATCAGAGAAGTACTTCTATCGTTAAACACCTTATCATTTCTACATAGCCAAAGCGA
CCAAATAACGGCAAGCGCTCCCACCCTAATAATAGTTCTAAACCTGTAATCTAT-CCCATGTAACCAGTTGCCAAATACA
TTAGCAACACTACAAGGAGGATACAAGCCAGAAGCTCTCTGGATGATTGACCATATAGAATGAGCCAATTTGCATTGGAA
AAATT--AATGGTTTATTGTCCCATCATGGTGA-CAAAAGACACATTGCGGACTTCCATGCCAATTTCTCTTAATAAGGT
TATCTTTAGTAAGAATGACTCTGCGACGAAGATACCATGCAAAGATGTTATTCTTAAGAGGTATCTTCATCTTCCAGATC
TTC---TTGTTATTATCAACTGGCACATCAGACTAGATTGACGCTCTATACATAGACTACACTGAGAATTGTCCATTCCC
ATGTAGGTTCCATTGAAATACATCAGACCCATGTGACAAATGCACCATGGACAACCACTGGAGCAGGATGTACCATGATT
GAAGTCTGGGTCCAATT-
>chr6A_2108
--------------------------------------------------------------------------------
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-----------ATAAAGGGCACTTTGTTACCTA-----AAAAATTTAAACAATACACCTGCCCTATGCATAACTAAGATG
CACACCGCCTTAACCA-AGTCCAAATT--CCAAAGAAATT---TAAG--AAGGCGGGATCCAAGTAAACATG--TGAAGA
CTGTATAACGCCTAAGACGTAGGAGAGCCGATCCGAATGTCATGTTGTCACCCATGTCGGGTAAAAGTATCCCTCA-CTA
TGGCCTTCAAGTGTGTACACATCTCCGTAAACAGGTCTCGATTCTTCACATGCTGTAGAGACGACCATAAACGGAGCTTA
CGGATACATTTGTAGATAACCTGCATATAAGAAGTATTTTTATCGTTAAATACCTTATCATTTTTACATACCCAGAGCGG
CAAAATGCTGGCAACCGCTCCCACCCTGAGAAGGATTCTAAACCTGTATTCAAT-CTCATGTAACCAGTTACCAAATATA
TTAGCAACACTTCATGGATGATACAAGCTAGAAGCTACCTGGATGACTGTTCATATAAAACGAGTCAATTTGCATTGGAA
AAACA--AGTGTTTTATTGTTTCCTTATGATGA-AAACACACACATTGCGTACTTCCATGTCAATTCCTCTTAATAAGGT
TATCTTTGGTAAGAATGACTCCTCGACGAAGATACCACTCAAAGATTTTATTCTTAAGCAGTATCTTCATTTTCCAGATC
TTC---TTGTTATTATCAACTGGCACCTCTTACTGGATCAAAGCACTGTACATAGAATCCATCGTGAATTTACCATTCAC
TTGTTGGCTCCAACAAAATTCGTCGGCTCCTTGTGAAAGTTATATCGTGGTTAGTATCAGTAATAGAGTGTTCCACAATA
CAAGTCTCCGACCAATTA
>chr5B_2238
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------------------------------------------------------------------------------GA
CTGCATGACCCCTAAATCGTGGGAGGGTCAATCCTAAGATCATGTTGCCATCCATGTCGGGTAAAAGTATCACTCG-CCG
TTTTCTCCAAGCGTGTACACACCTTCATAAACAGGTCTTGATTTTTCACATGTTGTAGAGACGACCATAAACAAAGCGTA
CAGGTACATCTGTAGATAATCTGCATAAGAGAAGTGATTTTATTGTTAAAACCCTTCTCATTTCTACATAACCAAAGCGA
CCAAATAACAGTGAGCGTTCCCACCCTAAGAAGAATTCTAAACTCGTGATCAATCCCCATGTAACCAGTTGCCAAATATA
TTAGTAACACTACATAGAGGATACAAGCCAGAAGCTACTTGGATGACTGACCATATAGAATGAGCTAATTTGCATTGGAA
AAATA--AGTGTTTTATTATTTTATCATGTTGACAAAAAAACACATTGTGTACTTCCATGCCAATTCCTCTTAATAAGGT
TATCTTTGGTAAGAATGACTCTTCGACAAAGTTACCACACAAAGATTTTATTCTTAAGTGATATCTTCATCTTCCAAATC
TT----TTATTATTATCAACTGGCATCTCTGGCTGGATTAGAGCTCTATGCATAGAGTCCACTGTGAATTTACCACTCAC
GTGTAGGTTCCAACGAAATTCATTGGCTCCTTGTGACAATTGTATTGTGGAAAGTCTCCGTAACAAAGTGTTCCACGATT
CAAGTCTGGGACCAA---
>SNPs
-----------------S-S-------------------S-------------SS-SSSSSSSSS--SSSSSS-------
S------------S------------S-------------S-------------------------------------S-
--------------S-SSS----SS------------S----S------SSSSSSSSS------S-S-S----S-S----
----------------S-------S----SS----S--S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S-----SS---------------------------------------------------------
-----------------------------------------S--S-------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S--SS-S--------S-S----S---S-S---SSS
SSSSSSS--------------------------------S---SSSSS-SS-SSS-SS--SSSSSSSSSS--S-SSS-SS
SSSSSSS--SS---S-S-S--SS--S--S-S-SSS-S-S----S--S-SSSSSSS-SSS-SSSS-SS-S-S--SSSSSSS
S-SSSS-SSS-SSSS--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
----------------------------------------S-SSSSSSSSSSS---------------------------
------------SS--------------------------------------------S---------------S-----
-------------S------------------------------------------------------------------
---------------S----------------S-----------------------------------------------
------------------------------------SS-S----------S--------S--------------------
-----------------------S--------------------------------------------------------
-------------------------------------S----------------------------------S-------
-----------------S------------------------------------S-------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------SS-----------------
--------S---------S-----------S----------------------------------------SS-------
----------------------------------------S---------------------------------------
-----------------------------------------S--------------------------S-----------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------S--------------------------S---S----
-----------------S----S----------------------------------------------S--S-------
--------S------------------------------------------------S-S-----S--------------
--------------S---------------------------------S-----------------------SS------
-----------S-------------------------S--S-S----------------------------------S--
-------------------S-------------SS-----------S------------------S--------------
--S--------------------------------------S--------------------------------------
--------------------------S--S--------------------------------S--S--------------
-------S------------S------SS-S--S----------------------------------------------
------------------------S---------S-----------------S-------------S-------------
-------S--------------------------------------------------S--------------S------
---S-------S---------S--------------------------------------S-SSS---------------
-------------------------------S--------------S------------S-S-S----------------
--S-------S-S-S-S-
>forward_257
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-----------------------------------------------------------------------------CGT
GCTCGCTAACCCTCTAG---------------------------------------------------------------
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>reverse_1655
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------------------------------------------------------CAGTTCTTCAACGTGCAGGC------
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>forward_667
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-------AGGAGCAAATAACAGCCCCC-----------------------------------------------------
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>reverse_1961
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----------------------------------------AATCAAGGGGTCGCAGTACG--------------------
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------------------
>forward_668
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--------GGAGCAAATAACAGCCCCCT----------------------------------------------------
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>reverse_2423
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----------------------GGAAGCCTTACCGGTCCTTT--------------------------------------
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------------------
