Multiple sequence alignment - TraesCS5D01G129400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G129400 chr5D 100.000 3808 0 0 1 3808 203060819 203057012 0.000000e+00 7033
1 TraesCS5D01G129400 chr5D 84.118 170 27 0 2210 2379 353795667 353795836 8.460000e-37 165
2 TraesCS5D01G129400 chr5B 93.317 1616 57 26 421 2023 208700854 208702431 0.000000e+00 2338
3 TraesCS5D01G129400 chr5B 95.725 538 18 3 2393 2930 208702884 208703416 0.000000e+00 861
4 TraesCS5D01G129400 chr5B 96.583 439 13 1 2016 2454 208702467 208702903 0.000000e+00 726
5 TraesCS5D01G129400 chr5B 90.086 232 17 3 1 231 208652600 208652826 2.880000e-76 296
6 TraesCS5D01G129400 chr5B 89.671 213 7 11 2922 3119 208704906 208705118 1.360000e-64 257
7 TraesCS5D01G129400 chr5B 79.155 355 38 16 3121 3446 208705160 208705507 2.980000e-51 213
8 TraesCS5D01G129400 chr5B 85.784 204 18 6 223 423 208667713 208667908 4.990000e-49 206
9 TraesCS5D01G129400 chr5A 92.729 1389 63 15 152 1522 219697685 219696317 0.000000e+00 1971
10 TraesCS5D01G129400 chr5A 92.734 1335 50 19 1609 2928 219696146 219694844 0.000000e+00 1884
11 TraesCS5D01G129400 chr5A 84.752 505 49 9 2970 3446 219693864 219693360 7.400000e-132 481
12 TraesCS5D01G129400 chr5A 96.809 94 3 0 1 94 219710227 219710134 1.420000e-34 158
13 TraesCS5D01G129400 chr2A 93.132 364 23 2 3445 3808 686608872 686609233 2.010000e-147 532
14 TraesCS5D01G129400 chr2A 91.460 363 29 2 3446 3808 170070549 170070909 7.350000e-137 497
15 TraesCS5D01G129400 chr6D 93.075 361 23 2 3448 3808 162801559 162801917 9.370000e-146 527
16 TraesCS5D01G129400 chr4D 92.562 363 24 3 3446 3808 93840944 93840585 5.640000e-143 518
17 TraesCS5D01G129400 chr6B 91.209 364 30 2 3446 3808 501070602 501070964 9.500000e-136 494
18 TraesCS5D01G129400 chr6A 89.518 353 35 2 3456 3808 198071599 198071949 2.700000e-121 446
19 TraesCS5D01G129400 chr6A 79.545 176 30 5 3270 3441 563498810 563498637 1.860000e-23 121
20 TraesCS5D01G129400 chr3D 90.087 343 33 1 3466 3808 289720978 289720637 9.710000e-121 444
21 TraesCS5D01G129400 chr3D 88.947 190 19 2 2195 2383 486050788 486050600 2.290000e-57 233
22 TraesCS5D01G129400 chr2D 87.738 367 43 2 3442 3808 165547768 165548132 9.780000e-116 427
23 TraesCS5D01G129400 chrUn 87.052 363 44 3 3446 3808 73965437 73965796 1.270000e-109 407
24 TraesCS5D01G129400 chr1A 85.981 321 30 9 395 711 570925343 570925034 2.840000e-86 329
25 TraesCS5D01G129400 chr1A 87.500 192 22 2 2193 2383 465496854 465497044 1.780000e-53 220
26 TraesCS5D01G129400 chr3B 89.385 179 17 2 2206 2383 648747020 648746843 1.380000e-54 224
27 TraesCS5D01G129400 chr3A 89.385 179 17 2 2206 2383 629228104 629227927 1.380000e-54 224
28 TraesCS5D01G129400 chr1D 88.827 179 18 2 2206 2383 366475669 366475492 6.400000e-53 219
29 TraesCS5D01G129400 chr1B 88.268 179 19 2 2206 2383 491232546 491232723 2.980000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G129400 chr5D 203057012 203060819 3807 True 7033.000000 7033 100.000000 1 3808 1 chr5D.!!$R1 3807
1 TraesCS5D01G129400 chr5B 208700854 208705507 4653 False 879.000000 2338 90.890200 421 3446 5 chr5B.!!$F3 3025
2 TraesCS5D01G129400 chr5A 219693360 219697685 4325 True 1445.333333 1971 90.071667 152 3446 3 chr5A.!!$R2 3294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 601 0.173481 TGTTCCGAGATGAAGCGAGG 59.827 55.0 0.0 0.0 0.00 4.63 F
885 896 0.179220 TAATTAAACGCACGCACGCC 60.179 50.0 0.0 0.0 36.19 5.68 F
1065 1082 0.595588 CACGCCAGGCATTTGTTGTA 59.404 50.0 13.3 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1838 1.078823 TCTCCTTCCTTCTGCCCTGTA 59.921 52.381 0.0 0.0 0.00 2.74 R
1970 2096 1.382420 TGCCCACTTGCCCTGTTTT 60.382 52.632 0.0 0.0 0.00 2.43 R
2848 3062 2.223711 ACCAAACAATTTGCTGTCCGTC 60.224 45.455 0.0 0.0 39.31 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.974980 CCAACCTATATGTTTAAACTGTTGTTT 57.025 29.630 18.72 2.62 46.74 2.83
33 34 9.744468 ATATGTTTAAACTGTTGTTTTGACTCC 57.256 29.630 18.72 0.00 43.13 3.85
34 35 7.222000 TGTTTAAACTGTTGTTTTGACTCCT 57.778 32.000 18.72 0.00 43.13 3.69
35 36 7.662897 TGTTTAAACTGTTGTTTTGACTCCTT 58.337 30.769 18.72 0.00 43.13 3.36
36 37 8.145122 TGTTTAAACTGTTGTTTTGACTCCTTT 58.855 29.630 18.72 0.00 43.13 3.11
37 38 8.984764 GTTTAAACTGTTGTTTTGACTCCTTTT 58.015 29.630 11.18 0.00 43.13 2.27
69 70 9.537192 TCTACAGAAGAGAAACGTAAAAATTCA 57.463 29.630 0.00 0.00 0.00 2.57
70 71 9.798885 CTACAGAAGAGAAACGTAAAAATTCAG 57.201 33.333 0.00 0.00 0.00 3.02
71 72 7.639945 ACAGAAGAGAAACGTAAAAATTCAGG 58.360 34.615 0.00 0.00 0.00 3.86
72 73 7.078228 CAGAAGAGAAACGTAAAAATTCAGGG 58.922 38.462 0.00 0.00 0.00 4.45
73 74 6.771267 AGAAGAGAAACGTAAAAATTCAGGGT 59.229 34.615 0.00 0.00 0.00 4.34
74 75 6.555812 AGAGAAACGTAAAAATTCAGGGTC 57.444 37.500 0.00 0.00 0.00 4.46
75 76 6.059484 AGAGAAACGTAAAAATTCAGGGTCA 58.941 36.000 0.00 0.00 0.00 4.02
76 77 6.544564 AGAGAAACGTAAAAATTCAGGGTCAA 59.455 34.615 0.00 0.00 0.00 3.18
77 78 6.500910 AGAAACGTAAAAATTCAGGGTCAAC 58.499 36.000 0.00 0.00 0.00 3.18
78 79 5.838531 AACGTAAAAATTCAGGGTCAACA 57.161 34.783 0.00 0.00 0.00 3.33
79 80 5.432885 ACGTAAAAATTCAGGGTCAACAG 57.567 39.130 0.00 0.00 0.00 3.16
80 81 5.127491 ACGTAAAAATTCAGGGTCAACAGA 58.873 37.500 0.00 0.00 0.00 3.41
81 82 5.591067 ACGTAAAAATTCAGGGTCAACAGAA 59.409 36.000 0.00 0.00 0.00 3.02
82 83 6.095720 ACGTAAAAATTCAGGGTCAACAGAAA 59.904 34.615 0.00 0.00 0.00 2.52
83 84 6.975772 CGTAAAAATTCAGGGTCAACAGAAAA 59.024 34.615 0.00 0.00 0.00 2.29
84 85 7.489757 CGTAAAAATTCAGGGTCAACAGAAAAA 59.510 33.333 0.00 0.00 0.00 1.94
139 140 9.381038 ACTCTATTAAGTTCAATATAGAGGCCA 57.619 33.333 5.01 0.00 45.50 5.36
144 145 6.966534 AAGTTCAATATAGAGGCCATTTGG 57.033 37.500 5.01 0.00 38.53 3.28
145 146 6.266131 AGTTCAATATAGAGGCCATTTGGA 57.734 37.500 5.01 0.00 37.39 3.53
146 147 6.856757 AGTTCAATATAGAGGCCATTTGGAT 58.143 36.000 5.01 0.00 37.39 3.41
147 148 7.300658 AGTTCAATATAGAGGCCATTTGGATT 58.699 34.615 5.01 0.00 37.39 3.01
148 149 7.786464 AGTTCAATATAGAGGCCATTTGGATTT 59.214 33.333 5.01 0.00 37.39 2.17
149 150 9.077885 GTTCAATATAGAGGCCATTTGGATTTA 57.922 33.333 5.01 0.00 37.39 1.40
150 151 8.868522 TCAATATAGAGGCCATTTGGATTTAG 57.131 34.615 5.01 0.00 37.39 1.85
176 177 1.608055 CCATGCCACACTTTCTCACA 58.392 50.000 0.00 0.00 0.00 3.58
177 178 2.165167 CCATGCCACACTTTCTCACAT 58.835 47.619 0.00 0.00 0.00 3.21
224 227 7.947890 AGGTTAGTTCCATAAAATGAAGGTCAA 59.052 33.333 0.00 0.00 0.00 3.18
239 242 1.960689 GGTCAAAAGTTGGCAAGCCTA 59.039 47.619 12.96 1.22 36.88 3.93
246 249 5.551305 AAAGTTGGCAAGCCTAAAGAAAT 57.449 34.783 12.96 0.00 36.94 2.17
247 250 5.551305 AAGTTGGCAAGCCTAAAGAAATT 57.449 34.783 12.96 0.52 36.94 1.82
252 255 4.514816 TGGCAAGCCTAAAGAAATTTTTGC 59.485 37.500 12.96 10.18 39.02 3.68
261 264 7.379262 GCCTAAAGAAATTTTTGCCACATTTTG 59.621 33.333 0.00 0.00 0.00 2.44
264 267 6.756299 AGAAATTTTTGCCACATTTTGTGT 57.244 29.167 6.86 0.00 46.45 3.72
280 283 4.377839 TTGTGTGTGTTTGTTATGTGGG 57.622 40.909 0.00 0.00 0.00 4.61
291 294 2.578480 TGTTATGTGGGTCCCTAATGCA 59.422 45.455 10.00 0.00 0.00 3.96
295 298 0.323360 GTGGGTCCCTAATGCAGCAA 60.323 55.000 10.00 0.00 0.00 3.91
298 301 1.899142 GGGTCCCTAATGCAGCAAAAA 59.101 47.619 0.00 0.00 0.00 1.94
330 333 7.903145 ACCTAAAATAACCTTCCAAATTGGTC 58.097 34.615 12.28 0.00 39.03 4.02
348 351 7.817418 ATTGGTCAAACTTGTCTAAGCTTTA 57.183 32.000 3.20 0.00 37.43 1.85
349 352 6.861065 TGGTCAAACTTGTCTAAGCTTTAG 57.139 37.500 3.20 0.17 37.43 1.85
350 353 6.588204 TGGTCAAACTTGTCTAAGCTTTAGA 58.412 36.000 3.20 2.83 37.43 2.10
351 354 7.224297 TGGTCAAACTTGTCTAAGCTTTAGAT 58.776 34.615 3.20 0.00 37.43 1.98
352 355 7.173218 TGGTCAAACTTGTCTAAGCTTTAGATG 59.827 37.037 3.20 0.80 37.43 2.90
353 356 7.173390 GGTCAAACTTGTCTAAGCTTTAGATGT 59.827 37.037 3.20 0.00 37.43 3.06
354 357 8.012241 GTCAAACTTGTCTAAGCTTTAGATGTG 58.988 37.037 3.20 3.24 37.43 3.21
409 412 9.272901 CAAACAACCAATAGTATATGAACAACG 57.727 33.333 0.00 0.00 0.00 4.10
419 422 6.403878 AGTATATGAACAACGGCAAACTAGT 58.596 36.000 0.00 0.00 0.00 2.57
532 535 7.337184 GGGCTATCTTTAAGCTATGAAATACCC 59.663 40.741 0.00 0.00 39.97 3.69
594 601 0.173481 TGTTCCGAGATGAAGCGAGG 59.827 55.000 0.00 0.00 0.00 4.63
698 705 1.204062 GCACACGTCCATGAACACG 59.796 57.895 9.45 9.45 41.90 4.49
727 734 3.201290 GCCAGGACAGATACATTGTCAG 58.799 50.000 7.57 0.30 45.23 3.51
785 795 2.862512 CAAATGCGTTGTATGTGGGAC 58.137 47.619 0.00 0.00 32.08 4.46
786 796 1.083489 AATGCGTTGTATGTGGGACG 58.917 50.000 0.00 0.00 38.45 4.79
787 797 0.248012 ATGCGTTGTATGTGGGACGA 59.752 50.000 0.00 0.00 37.69 4.20
789 799 0.928229 GCGTTGTATGTGGGACGATC 59.072 55.000 0.00 0.00 37.69 3.69
791 801 0.928229 GTTGTATGTGGGACGATCGC 59.072 55.000 16.60 8.04 0.00 4.58
792 802 0.526739 TTGTATGTGGGACGATCGCG 60.527 55.000 16.60 0.00 44.79 5.87
793 803 1.660575 GTATGTGGGACGATCGCGG 60.661 63.158 16.60 0.00 43.17 6.46
796 806 3.520862 GTGGGACGATCGCGGGTA 61.521 66.667 16.60 0.00 43.17 3.69
797 807 3.214123 TGGGACGATCGCGGGTAG 61.214 66.667 16.60 0.00 43.17 3.18
813 824 4.731193 GCGGGTAGATTAGATCGATGTAGC 60.731 50.000 0.54 0.00 0.00 3.58
875 886 9.779237 CGATTACAACATCTAGCTAATTAAACG 57.221 33.333 0.00 0.00 0.00 3.60
876 887 9.582223 GATTACAACATCTAGCTAATTAAACGC 57.418 33.333 0.00 0.00 0.00 4.84
877 888 6.978343 ACAACATCTAGCTAATTAAACGCA 57.022 33.333 0.00 0.00 0.00 5.24
878 889 6.772078 ACAACATCTAGCTAATTAAACGCAC 58.228 36.000 0.00 0.00 0.00 5.34
879 890 5.637104 ACATCTAGCTAATTAAACGCACG 57.363 39.130 0.00 0.00 0.00 5.34
885 896 0.179220 TAATTAAACGCACGCACGCC 60.179 50.000 0.00 0.00 36.19 5.68
1065 1082 0.595588 CACGCCAGGCATTTGTTGTA 59.404 50.000 13.30 0.00 0.00 2.41
1162 1179 3.808656 GACGACGACGGGGGAGAC 61.809 72.222 12.58 0.00 44.46 3.36
1182 1199 4.101448 ACGGGAGGAGCATGCACC 62.101 66.667 24.95 24.95 36.20 5.01
1551 1598 2.228103 ACAGTGCTAACGACTCGATCAA 59.772 45.455 5.20 0.00 0.00 2.57
1560 1607 7.043391 TGCTAACGACTCGATCAATTTTCTATG 60.043 37.037 5.20 0.00 0.00 2.23
1586 1633 2.102578 GCTCAGCAACCCCATGTTATT 58.897 47.619 0.00 0.00 34.69 1.40
1587 1634 3.053693 AGCTCAGCAACCCCATGTTATTA 60.054 43.478 0.00 0.00 34.69 0.98
1588 1635 3.316308 GCTCAGCAACCCCATGTTATTAG 59.684 47.826 0.00 0.00 34.69 1.73
1726 1835 4.657824 ACGTGTTCCTCGCCACCG 62.658 66.667 0.00 0.00 0.00 4.94
1729 1838 2.915659 TGTTCCTCGCCACCGACT 60.916 61.111 0.00 0.00 38.82 4.18
1738 1847 2.579201 CCACCGACTACAGGGCAG 59.421 66.667 0.00 0.00 0.00 4.85
1743 1852 0.970937 CCGACTACAGGGCAGAAGGA 60.971 60.000 0.00 0.00 0.00 3.36
1914 2035 2.674796 ACCTAGGCTGATTCGTGTTC 57.325 50.000 9.30 0.00 0.00 3.18
1915 2036 1.899814 ACCTAGGCTGATTCGTGTTCA 59.100 47.619 9.30 0.00 0.00 3.18
1916 2037 2.301870 ACCTAGGCTGATTCGTGTTCAA 59.698 45.455 9.30 0.00 0.00 2.69
1920 2041 4.853924 AGGCTGATTCGTGTTCAAAAAT 57.146 36.364 0.00 0.00 0.00 1.82
1970 2096 0.250684 TGGTTTCGCATCTTCCAGCA 60.251 50.000 0.00 0.00 0.00 4.41
1977 2103 1.401931 CGCATCTTCCAGCAAAACAGG 60.402 52.381 0.00 0.00 0.00 4.00
2256 2424 3.682292 GAAGTGGGCGGCGGAGATT 62.682 63.158 9.78 0.00 0.00 2.40
2641 2851 4.767255 GCAGAGGTGAGGGTGCCG 62.767 72.222 0.00 0.00 0.00 5.69
2848 3062 2.943345 GCGTGGTCAGCGTGTTCAG 61.943 63.158 0.00 0.00 0.00 3.02
2885 3099 4.223923 TGTTTGGTTTCTTGGTGGAATTGT 59.776 37.500 0.00 0.00 0.00 2.71
2886 3100 5.182487 GTTTGGTTTCTTGGTGGAATTGTT 58.818 37.500 0.00 0.00 0.00 2.83
2894 3108 7.831691 TTCTTGGTGGAATTGTTATTTCTGA 57.168 32.000 0.00 0.00 0.00 3.27
3082 5257 4.323417 CACCTGTCTAGCCATACAAACAA 58.677 43.478 0.00 0.00 0.00 2.83
3089 5264 6.714810 TGTCTAGCCATACAAACAAAAGATGT 59.285 34.615 0.00 0.00 46.82 3.06
3119 5294 5.047847 TCTCAGTTTTACGTGGAACTCAAG 58.952 41.667 13.42 13.32 34.04 3.02
3124 5339 6.919662 CAGTTTTACGTGGAACTCAAGTAGTA 59.080 38.462 13.42 0.00 40.39 1.82
3128 5343 5.916661 ACGTGGAACTCAAGTAGTATCAT 57.083 39.130 0.00 0.00 37.50 2.45
3158 5373 3.614159 TGCGTCACGTATATGACTACC 57.386 47.619 0.00 0.00 45.73 3.18
3173 5388 3.067833 GACTACCACAAGAAGACAAGGC 58.932 50.000 0.00 0.00 0.00 4.35
3176 5391 0.178992 CCACAAGAAGACAAGGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
3206 5421 3.467374 TCTGGCATGTTTGGTTTTTCC 57.533 42.857 0.00 0.00 0.00 3.13
3207 5422 3.037549 TCTGGCATGTTTGGTTTTTCCT 58.962 40.909 0.00 0.00 37.07 3.36
3262 5481 4.506802 GCTCCCCACCCGAATATATTTCTT 60.507 45.833 0.00 0.00 0.00 2.52
3264 5483 6.368779 TCCCCACCCGAATATATTTCTTAG 57.631 41.667 0.00 0.00 0.00 2.18
3267 5486 7.513436 TCCCCACCCGAATATATTTCTTAGTTA 59.487 37.037 0.00 0.00 0.00 2.24
3300 5545 5.984233 TTCCATAAGCATGTGTAATCGTC 57.016 39.130 0.00 0.00 0.00 4.20
3324 5570 2.950781 AGAGATAGGAACGCCATGAGA 58.049 47.619 0.00 0.00 36.29 3.27
3334 5580 1.153168 GCCATGAGAAGGCGGCTTA 60.153 57.895 25.59 9.92 43.15 3.09
3345 5591 2.243810 AGGCGGCTTATTTTTGTTCCA 58.756 42.857 5.25 0.00 0.00 3.53
3355 5601 7.042725 GGCTTATTTTTGTTCCAGTTTCTTCAC 60.043 37.037 0.00 0.00 0.00 3.18
3359 5605 1.210967 TGTTCCAGTTTCTTCACCCGT 59.789 47.619 0.00 0.00 0.00 5.28
3363 5609 1.602377 CCAGTTTCTTCACCCGTTGTC 59.398 52.381 0.00 0.00 0.00 3.18
3439 5685 4.193826 TCTGTTGTCTGAAGGTCATAGC 57.806 45.455 0.00 0.00 0.00 2.97
3446 5692 5.809001 TGTCTGAAGGTCATAGCATTCTTT 58.191 37.500 0.00 0.00 0.00 2.52
3447 5693 6.240894 TGTCTGAAGGTCATAGCATTCTTTT 58.759 36.000 0.00 0.00 0.00 2.27
3448 5694 6.716628 TGTCTGAAGGTCATAGCATTCTTTTT 59.283 34.615 0.00 0.00 0.00 1.94
3465 5711 3.823369 TTTTTCCAAGGGTACGCCA 57.177 47.368 6.27 0.00 36.17 5.69
3466 5712 2.068834 TTTTTCCAAGGGTACGCCAA 57.931 45.000 6.27 0.00 36.17 4.52
3467 5713 2.296073 TTTTCCAAGGGTACGCCAAT 57.704 45.000 6.27 0.00 36.17 3.16
3468 5714 3.436577 TTTTCCAAGGGTACGCCAATA 57.563 42.857 6.27 0.00 36.17 1.90
3469 5715 2.702592 TTCCAAGGGTACGCCAATAG 57.297 50.000 6.27 0.00 36.17 1.73
3470 5716 0.179468 TCCAAGGGTACGCCAATAGC 59.821 55.000 6.27 0.00 36.17 2.97
3481 5727 2.528041 GCCAATAGCGTACCTTAGCT 57.472 50.000 0.00 0.00 46.53 3.32
3482 5728 2.835027 GCCAATAGCGTACCTTAGCTT 58.165 47.619 0.00 0.00 44.15 3.74
3483 5729 3.203716 GCCAATAGCGTACCTTAGCTTT 58.796 45.455 0.00 0.00 44.15 3.51
3484 5730 4.374399 GCCAATAGCGTACCTTAGCTTTA 58.626 43.478 0.00 0.00 44.15 1.85
3485 5731 4.995487 GCCAATAGCGTACCTTAGCTTTAT 59.005 41.667 0.00 0.00 44.15 1.40
3486 5732 6.161381 GCCAATAGCGTACCTTAGCTTTATA 58.839 40.000 0.00 0.00 44.15 0.98
3487 5733 6.310711 GCCAATAGCGTACCTTAGCTTTATAG 59.689 42.308 0.00 0.00 44.15 1.31
3488 5734 7.600065 CCAATAGCGTACCTTAGCTTTATAGA 58.400 38.462 0.00 0.00 44.15 1.98
3489 5735 8.086522 CCAATAGCGTACCTTAGCTTTATAGAA 58.913 37.037 0.00 0.00 44.15 2.10
3490 5736 9.130312 CAATAGCGTACCTTAGCTTTATAGAAG 57.870 37.037 0.00 0.00 44.15 2.85
3491 5737 6.956202 AGCGTACCTTAGCTTTATAGAAGA 57.044 37.500 0.00 0.00 41.52 2.87
3492 5738 6.972722 AGCGTACCTTAGCTTTATAGAAGAG 58.027 40.000 0.00 0.00 41.52 2.85
3493 5739 6.771749 AGCGTACCTTAGCTTTATAGAAGAGA 59.228 38.462 0.00 0.00 41.52 3.10
3494 5740 7.040961 AGCGTACCTTAGCTTTATAGAAGAGAG 60.041 40.741 0.00 0.00 41.52 3.20
3495 5741 7.041235 GCGTACCTTAGCTTTATAGAAGAGAGA 60.041 40.741 0.00 0.00 0.00 3.10
3496 5742 8.838365 CGTACCTTAGCTTTATAGAAGAGAGAA 58.162 37.037 0.00 0.00 0.00 2.87
3527 5773 9.958234 ATATACAAGAGATTACATATGCGCTAG 57.042 33.333 9.73 0.00 0.00 3.42
3528 5774 6.090483 ACAAGAGATTACATATGCGCTAGT 57.910 37.500 9.73 4.33 0.00 2.57
3529 5775 6.516718 ACAAGAGATTACATATGCGCTAGTT 58.483 36.000 9.73 0.00 0.00 2.24
3530 5776 7.658261 ACAAGAGATTACATATGCGCTAGTTA 58.342 34.615 9.73 0.00 0.00 2.24
3531 5777 7.810282 ACAAGAGATTACATATGCGCTAGTTAG 59.190 37.037 9.73 0.00 0.00 2.34
3532 5778 7.689446 AGAGATTACATATGCGCTAGTTAGA 57.311 36.000 9.73 0.00 0.00 2.10
3533 5779 8.287439 AGAGATTACATATGCGCTAGTTAGAT 57.713 34.615 9.73 0.00 0.00 1.98
3534 5780 8.187480 AGAGATTACATATGCGCTAGTTAGATG 58.813 37.037 9.73 3.06 0.00 2.90
3535 5781 7.831753 AGATTACATATGCGCTAGTTAGATGT 58.168 34.615 9.73 9.56 0.00 3.06
3536 5782 7.971168 AGATTACATATGCGCTAGTTAGATGTC 59.029 37.037 9.73 0.00 0.00 3.06
3537 5783 5.453567 ACATATGCGCTAGTTAGATGTCA 57.546 39.130 9.73 0.00 0.00 3.58
3538 5784 5.223382 ACATATGCGCTAGTTAGATGTCAC 58.777 41.667 9.73 0.00 0.00 3.67
3539 5785 3.801114 ATGCGCTAGTTAGATGTCACA 57.199 42.857 9.73 0.00 0.00 3.58
3540 5786 3.801114 TGCGCTAGTTAGATGTCACAT 57.199 42.857 9.73 0.00 0.00 3.21
3541 5787 3.447742 TGCGCTAGTTAGATGTCACATG 58.552 45.455 9.73 0.00 0.00 3.21
3542 5788 3.119137 TGCGCTAGTTAGATGTCACATGT 60.119 43.478 9.73 0.00 0.00 3.21
3543 5789 3.487574 GCGCTAGTTAGATGTCACATGTC 59.512 47.826 0.00 0.00 0.00 3.06
3544 5790 3.726235 CGCTAGTTAGATGTCACATGTCG 59.274 47.826 0.00 0.00 0.00 4.35
3545 5791 4.495844 CGCTAGTTAGATGTCACATGTCGA 60.496 45.833 0.00 0.00 0.00 4.20
3546 5792 4.735822 GCTAGTTAGATGTCACATGTCGAC 59.264 45.833 9.11 9.11 0.00 4.20
3547 5793 4.111375 AGTTAGATGTCACATGTCGACC 57.889 45.455 14.12 9.65 32.15 4.79
3548 5794 3.119101 AGTTAGATGTCACATGTCGACCC 60.119 47.826 14.12 13.52 32.15 4.46
3549 5795 1.561643 AGATGTCACATGTCGACCCT 58.438 50.000 14.12 14.89 32.15 4.34
3550 5796 2.735151 AGATGTCACATGTCGACCCTA 58.265 47.619 14.12 0.00 32.15 3.53
3551 5797 3.096852 AGATGTCACATGTCGACCCTAA 58.903 45.455 14.12 0.00 32.15 2.69
3552 5798 2.736144 TGTCACATGTCGACCCTAAC 57.264 50.000 14.12 5.73 32.15 2.34
3553 5799 2.244695 TGTCACATGTCGACCCTAACT 58.755 47.619 14.12 0.00 32.15 2.24
3554 5800 3.423749 TGTCACATGTCGACCCTAACTA 58.576 45.455 14.12 0.00 32.15 2.24
3555 5801 3.827876 TGTCACATGTCGACCCTAACTAA 59.172 43.478 14.12 0.00 32.15 2.24
3556 5802 4.082408 TGTCACATGTCGACCCTAACTAAG 60.082 45.833 14.12 0.00 32.15 2.18
3557 5803 3.119245 TCACATGTCGACCCTAACTAAGC 60.119 47.826 14.12 0.00 0.00 3.09
3558 5804 2.167900 ACATGTCGACCCTAACTAAGCC 59.832 50.000 14.12 0.00 0.00 4.35
3559 5805 2.226962 TGTCGACCCTAACTAAGCCT 57.773 50.000 14.12 0.00 0.00 4.58
3560 5806 2.097825 TGTCGACCCTAACTAAGCCTC 58.902 52.381 14.12 0.00 0.00 4.70
3561 5807 1.408340 GTCGACCCTAACTAAGCCTCC 59.592 57.143 3.51 0.00 0.00 4.30
3562 5808 1.006281 TCGACCCTAACTAAGCCTCCA 59.994 52.381 0.00 0.00 0.00 3.86
3563 5809 1.136500 CGACCCTAACTAAGCCTCCAC 59.864 57.143 0.00 0.00 0.00 4.02
3564 5810 2.185387 GACCCTAACTAAGCCTCCACA 58.815 52.381 0.00 0.00 0.00 4.17
3565 5811 1.907255 ACCCTAACTAAGCCTCCACAC 59.093 52.381 0.00 0.00 0.00 3.82
3566 5812 1.209747 CCCTAACTAAGCCTCCACACC 59.790 57.143 0.00 0.00 0.00 4.16
3567 5813 1.906574 CCTAACTAAGCCTCCACACCA 59.093 52.381 0.00 0.00 0.00 4.17
3568 5814 2.354805 CCTAACTAAGCCTCCACACCAC 60.355 54.545 0.00 0.00 0.00 4.16
3569 5815 1.435256 AACTAAGCCTCCACACCACT 58.565 50.000 0.00 0.00 0.00 4.00
3570 5816 0.977395 ACTAAGCCTCCACACCACTC 59.023 55.000 0.00 0.00 0.00 3.51
3571 5817 0.250513 CTAAGCCTCCACACCACTCC 59.749 60.000 0.00 0.00 0.00 3.85
3572 5818 1.198759 TAAGCCTCCACACCACTCCC 61.199 60.000 0.00 0.00 0.00 4.30
3573 5819 2.930562 GCCTCCACACCACTCCCT 60.931 66.667 0.00 0.00 0.00 4.20
3574 5820 1.612442 GCCTCCACACCACTCCCTA 60.612 63.158 0.00 0.00 0.00 3.53
3575 5821 1.617947 GCCTCCACACCACTCCCTAG 61.618 65.000 0.00 0.00 0.00 3.02
3576 5822 1.617947 CCTCCACACCACTCCCTAGC 61.618 65.000 0.00 0.00 0.00 3.42
3577 5823 0.616111 CTCCACACCACTCCCTAGCT 60.616 60.000 0.00 0.00 0.00 3.32
3578 5824 0.614979 TCCACACCACTCCCTAGCTC 60.615 60.000 0.00 0.00 0.00 4.09
3579 5825 0.616111 CCACACCACTCCCTAGCTCT 60.616 60.000 0.00 0.00 0.00 4.09
3580 5826 1.342076 CCACACCACTCCCTAGCTCTA 60.342 57.143 0.00 0.00 0.00 2.43
3581 5827 1.751924 CACACCACTCCCTAGCTCTAC 59.248 57.143 0.00 0.00 0.00 2.59
3582 5828 1.641714 ACACCACTCCCTAGCTCTACT 59.358 52.381 0.00 0.00 0.00 2.57
3583 5829 2.303175 CACCACTCCCTAGCTCTACTC 58.697 57.143 0.00 0.00 0.00 2.59
3584 5830 1.134037 ACCACTCCCTAGCTCTACTCG 60.134 57.143 0.00 0.00 0.00 4.18
3585 5831 1.141254 CCACTCCCTAGCTCTACTCGA 59.859 57.143 0.00 0.00 0.00 4.04
3586 5832 2.215196 CACTCCCTAGCTCTACTCGAC 58.785 57.143 0.00 0.00 0.00 4.20
3587 5833 2.121129 ACTCCCTAGCTCTACTCGACT 58.879 52.381 0.00 0.00 0.00 4.18
3588 5834 3.069872 CACTCCCTAGCTCTACTCGACTA 59.930 52.174 0.00 0.00 0.00 2.59
3589 5835 3.070015 ACTCCCTAGCTCTACTCGACTAC 59.930 52.174 0.00 0.00 0.00 2.73
3590 5836 3.307506 TCCCTAGCTCTACTCGACTACT 58.692 50.000 0.00 0.00 0.00 2.57
3591 5837 3.321682 TCCCTAGCTCTACTCGACTACTC 59.678 52.174 0.00 0.00 0.00 2.59
3592 5838 3.322828 CCCTAGCTCTACTCGACTACTCT 59.677 52.174 0.00 0.00 0.00 3.24
3593 5839 4.523943 CCCTAGCTCTACTCGACTACTCTA 59.476 50.000 0.00 0.00 0.00 2.43
3594 5840 5.010922 CCCTAGCTCTACTCGACTACTCTAA 59.989 48.000 0.00 0.00 0.00 2.10
3595 5841 6.295462 CCCTAGCTCTACTCGACTACTCTAAT 60.295 46.154 0.00 0.00 0.00 1.73
3596 5842 7.093814 CCCTAGCTCTACTCGACTACTCTAATA 60.094 44.444 0.00 0.00 0.00 0.98
3597 5843 7.756722 CCTAGCTCTACTCGACTACTCTAATAC 59.243 44.444 0.00 0.00 0.00 1.89
3598 5844 7.294017 AGCTCTACTCGACTACTCTAATACT 57.706 40.000 0.00 0.00 0.00 2.12
3599 5845 8.408043 AGCTCTACTCGACTACTCTAATACTA 57.592 38.462 0.00 0.00 0.00 1.82
3600 5846 8.859090 AGCTCTACTCGACTACTCTAATACTAA 58.141 37.037 0.00 0.00 0.00 2.24
3601 5847 9.643693 GCTCTACTCGACTACTCTAATACTAAT 57.356 37.037 0.00 0.00 0.00 1.73
3606 5852 9.054922 ACTCGACTACTCTAATACTAATTGTCC 57.945 37.037 0.00 0.00 0.00 4.02
3607 5853 9.275398 CTCGACTACTCTAATACTAATTGTCCT 57.725 37.037 0.00 0.00 0.00 3.85
3608 5854 9.270640 TCGACTACTCTAATACTAATTGTCCTC 57.729 37.037 0.00 0.00 0.00 3.71
3609 5855 8.505625 CGACTACTCTAATACTAATTGTCCTCC 58.494 40.741 0.00 0.00 0.00 4.30
3610 5856 9.352191 GACTACTCTAATACTAATTGTCCTCCA 57.648 37.037 0.00 0.00 0.00 3.86
3611 5857 9.710818 ACTACTCTAATACTAATTGTCCTCCAA 57.289 33.333 0.00 0.00 37.49 3.53
3614 5860 9.892130 ACTCTAATACTAATTGTCCTCCAAAAG 57.108 33.333 0.00 0.00 36.44 2.27
3615 5861 8.732746 TCTAATACTAATTGTCCTCCAAAAGC 57.267 34.615 0.00 0.00 36.44 3.51
3616 5862 8.548877 TCTAATACTAATTGTCCTCCAAAAGCT 58.451 33.333 0.00 0.00 36.44 3.74
3617 5863 7.631717 AATACTAATTGTCCTCCAAAAGCTC 57.368 36.000 0.00 0.00 36.44 4.09
3618 5864 4.336280 ACTAATTGTCCTCCAAAAGCTCC 58.664 43.478 0.00 0.00 36.44 4.70
3619 5865 2.222227 ATTGTCCTCCAAAAGCTCCC 57.778 50.000 0.00 0.00 36.44 4.30
3620 5866 0.250727 TTGTCCTCCAAAAGCTCCCG 60.251 55.000 0.00 0.00 0.00 5.14
3621 5867 2.041115 GTCCTCCAAAAGCTCCCGC 61.041 63.158 0.00 0.00 0.00 6.13
3637 5883 3.791586 GCTCTGGCCCAGGTCCTC 61.792 72.222 11.68 0.00 31.51 3.71
3638 5884 2.284921 CTCTGGCCCAGGTCCTCA 60.285 66.667 11.68 0.00 31.51 3.86
3639 5885 2.284921 TCTGGCCCAGGTCCTCAG 60.285 66.667 11.68 0.00 31.51 3.35
3640 5886 2.284921 CTGGCCCAGGTCCTCAGA 60.285 66.667 1.63 0.00 0.00 3.27
3641 5887 1.692042 CTGGCCCAGGTCCTCAGAT 60.692 63.158 1.63 0.00 0.00 2.90
3642 5888 1.690633 TGGCCCAGGTCCTCAGATC 60.691 63.158 0.00 0.00 0.00 2.75
3643 5889 1.690633 GGCCCAGGTCCTCAGATCA 60.691 63.158 0.00 0.00 0.00 2.92
3644 5890 1.059006 GGCCCAGGTCCTCAGATCAT 61.059 60.000 0.00 0.00 0.00 2.45
3645 5891 0.396060 GCCCAGGTCCTCAGATCATC 59.604 60.000 0.00 0.00 0.00 2.92
3646 5892 1.798626 CCCAGGTCCTCAGATCATCA 58.201 55.000 0.00 0.00 0.00 3.07
3647 5893 2.121948 CCCAGGTCCTCAGATCATCAA 58.878 52.381 0.00 0.00 0.00 2.57
3648 5894 2.507058 CCCAGGTCCTCAGATCATCAAA 59.493 50.000 0.00 0.00 0.00 2.69
3649 5895 3.433314 CCCAGGTCCTCAGATCATCAAAG 60.433 52.174 0.00 0.00 0.00 2.77
3650 5896 3.453717 CCAGGTCCTCAGATCATCAAAGA 59.546 47.826 0.00 0.00 0.00 2.52
3651 5897 4.102838 CCAGGTCCTCAGATCATCAAAGAT 59.897 45.833 0.00 0.00 0.00 2.40
3652 5898 5.299148 CAGGTCCTCAGATCATCAAAGATC 58.701 45.833 0.00 0.00 43.73 2.75
3653 5899 4.967442 AGGTCCTCAGATCATCAAAGATCA 59.033 41.667 6.70 0.00 45.39 2.92
3654 5900 5.607592 AGGTCCTCAGATCATCAAAGATCAT 59.392 40.000 6.70 0.00 45.39 2.45
3655 5901 5.701750 GGTCCTCAGATCATCAAAGATCATG 59.298 44.000 6.70 0.00 45.39 3.07
3656 5902 6.289834 GTCCTCAGATCATCAAAGATCATGT 58.710 40.000 6.70 0.00 45.39 3.21
3657 5903 7.440198 GTCCTCAGATCATCAAAGATCATGTA 58.560 38.462 6.70 0.00 45.39 2.29
3658 5904 7.384660 GTCCTCAGATCATCAAAGATCATGTAC 59.615 40.741 6.70 0.00 45.39 2.90
3659 5905 6.649973 CCTCAGATCATCAAAGATCATGTACC 59.350 42.308 6.70 0.00 45.39 3.34
3660 5906 7.128234 TCAGATCATCAAAGATCATGTACCA 57.872 36.000 6.70 0.00 45.39 3.25
3661 5907 6.988580 TCAGATCATCAAAGATCATGTACCAC 59.011 38.462 6.70 0.00 45.39 4.16
3662 5908 6.204301 CAGATCATCAAAGATCATGTACCACC 59.796 42.308 6.70 0.00 45.39 4.61
3663 5909 4.441792 TCATCAAAGATCATGTACCACCG 58.558 43.478 0.00 0.00 0.00 4.94
3664 5910 3.973206 TCAAAGATCATGTACCACCGT 57.027 42.857 0.00 0.00 0.00 4.83
3665 5911 5.128008 TCATCAAAGATCATGTACCACCGTA 59.872 40.000 0.00 0.00 0.00 4.02
3666 5912 5.607939 TCAAAGATCATGTACCACCGTAT 57.392 39.130 0.00 0.00 0.00 3.06
3667 5913 5.597806 TCAAAGATCATGTACCACCGTATC 58.402 41.667 0.00 0.00 0.00 2.24
3668 5914 4.602340 AAGATCATGTACCACCGTATCC 57.398 45.455 0.00 0.00 0.00 2.59
3669 5915 2.897969 AGATCATGTACCACCGTATCCC 59.102 50.000 0.00 0.00 0.00 3.85
3670 5916 2.162264 TCATGTACCACCGTATCCCA 57.838 50.000 0.00 0.00 0.00 4.37
3671 5917 1.758280 TCATGTACCACCGTATCCCAC 59.242 52.381 0.00 0.00 0.00 4.61
3672 5918 1.760613 CATGTACCACCGTATCCCACT 59.239 52.381 0.00 0.00 0.00 4.00
3673 5919 1.477553 TGTACCACCGTATCCCACTC 58.522 55.000 0.00 0.00 0.00 3.51
3674 5920 0.383231 GTACCACCGTATCCCACTCG 59.617 60.000 0.00 0.00 0.00 4.18
3675 5921 1.386525 TACCACCGTATCCCACTCGC 61.387 60.000 0.00 0.00 0.00 5.03
3676 5922 2.423898 CCACCGTATCCCACTCGCT 61.424 63.158 0.00 0.00 0.00 4.93
3677 5923 1.065928 CACCGTATCCCACTCGCTC 59.934 63.158 0.00 0.00 0.00 5.03
3678 5924 1.076923 ACCGTATCCCACTCGCTCT 60.077 57.895 0.00 0.00 0.00 4.09
3679 5925 0.683504 ACCGTATCCCACTCGCTCTT 60.684 55.000 0.00 0.00 0.00 2.85
3680 5926 0.249073 CCGTATCCCACTCGCTCTTG 60.249 60.000 0.00 0.00 0.00 3.02
3681 5927 0.738975 CGTATCCCACTCGCTCTTGA 59.261 55.000 0.00 0.00 0.00 3.02
3682 5928 1.338337 CGTATCCCACTCGCTCTTGAT 59.662 52.381 0.00 0.00 0.00 2.57
3683 5929 2.605823 CGTATCCCACTCGCTCTTGATC 60.606 54.545 0.00 0.00 0.00 2.92
3684 5930 1.489481 ATCCCACTCGCTCTTGATCA 58.511 50.000 0.00 0.00 0.00 2.92
3685 5931 1.489481 TCCCACTCGCTCTTGATCAT 58.511 50.000 0.00 0.00 0.00 2.45
3686 5932 1.137675 TCCCACTCGCTCTTGATCATG 59.862 52.381 0.00 0.00 0.00 3.07
3687 5933 0.935898 CCACTCGCTCTTGATCATGC 59.064 55.000 0.00 0.86 0.00 4.06
3688 5934 0.935898 CACTCGCTCTTGATCATGCC 59.064 55.000 0.00 0.00 0.00 4.40
3689 5935 0.179062 ACTCGCTCTTGATCATGCCC 60.179 55.000 0.00 0.00 0.00 5.36
3690 5936 1.220169 CTCGCTCTTGATCATGCCCG 61.220 60.000 0.00 5.42 0.00 6.13
3691 5937 1.522355 CGCTCTTGATCATGCCCGT 60.522 57.895 0.00 0.00 0.00 5.28
3692 5938 1.769098 CGCTCTTGATCATGCCCGTG 61.769 60.000 0.00 0.00 0.00 4.94
3693 5939 2.020131 CTCTTGATCATGCCCGTGC 58.980 57.895 0.00 0.00 38.26 5.34
3694 5940 1.442526 CTCTTGATCATGCCCGTGCC 61.443 60.000 0.00 0.00 36.33 5.01
3695 5941 2.823593 TTGATCATGCCCGTGCCG 60.824 61.111 0.00 0.00 36.33 5.69
3696 5942 3.322318 TTGATCATGCCCGTGCCGA 62.322 57.895 0.00 0.00 36.33 5.54
3697 5943 2.513666 GATCATGCCCGTGCCGAA 60.514 61.111 0.00 0.00 36.33 4.30
3698 5944 2.514592 ATCATGCCCGTGCCGAAG 60.515 61.111 0.00 0.00 36.33 3.79
3699 5945 2.923426 GATCATGCCCGTGCCGAAGA 62.923 60.000 0.00 0.00 36.33 2.87
3700 5946 3.499737 CATGCCCGTGCCGAAGAC 61.500 66.667 0.00 0.00 36.33 3.01
3701 5947 3.706373 ATGCCCGTGCCGAAGACT 61.706 61.111 0.00 0.00 36.33 3.24
3702 5948 3.665675 ATGCCCGTGCCGAAGACTC 62.666 63.158 0.00 0.00 36.33 3.36
3703 5949 4.070552 GCCCGTGCCGAAGACTCT 62.071 66.667 0.00 0.00 0.00 3.24
3704 5950 2.182030 CCCGTGCCGAAGACTCTC 59.818 66.667 0.00 0.00 0.00 3.20
3705 5951 2.202492 CCGTGCCGAAGACTCTCG 60.202 66.667 0.00 1.52 38.58 4.04
3706 5952 2.876645 CGTGCCGAAGACTCTCGC 60.877 66.667 0.00 0.00 37.51 5.03
3707 5953 2.876645 GTGCCGAAGACTCTCGCG 60.877 66.667 0.00 0.00 37.51 5.87
3708 5954 3.362797 TGCCGAAGACTCTCGCGT 61.363 61.111 5.77 0.00 37.51 6.01
3709 5955 2.126424 GCCGAAGACTCTCGCGTT 60.126 61.111 5.77 0.00 37.51 4.84
3710 5956 2.153322 GCCGAAGACTCTCGCGTTC 61.153 63.158 5.77 0.00 37.51 3.95
3711 5957 1.514443 CCGAAGACTCTCGCGTTCC 60.514 63.158 5.77 0.00 37.51 3.62
3712 5958 1.502640 CGAAGACTCTCGCGTTCCT 59.497 57.895 5.77 0.00 31.04 3.36
3713 5959 0.109689 CGAAGACTCTCGCGTTCCTT 60.110 55.000 5.77 3.88 31.04 3.36
3714 5960 1.666311 CGAAGACTCTCGCGTTCCTTT 60.666 52.381 5.77 0.00 31.04 3.11
3715 5961 1.721926 GAAGACTCTCGCGTTCCTTTG 59.278 52.381 5.77 0.00 0.00 2.77
3716 5962 0.667792 AGACTCTCGCGTTCCTTTGC 60.668 55.000 5.77 0.00 0.00 3.68
3717 5963 0.667792 GACTCTCGCGTTCCTTTGCT 60.668 55.000 5.77 0.00 0.00 3.91
3718 5964 0.249911 ACTCTCGCGTTCCTTTGCTT 60.250 50.000 5.77 0.00 0.00 3.91
3719 5965 0.440371 CTCTCGCGTTCCTTTGCTTC 59.560 55.000 5.77 0.00 0.00 3.86
3720 5966 0.949105 TCTCGCGTTCCTTTGCTTCC 60.949 55.000 5.77 0.00 0.00 3.46
3721 5967 1.227704 TCGCGTTCCTTTGCTTCCA 60.228 52.632 5.77 0.00 0.00 3.53
3722 5968 0.605319 TCGCGTTCCTTTGCTTCCAT 60.605 50.000 5.77 0.00 0.00 3.41
3723 5969 1.083489 CGCGTTCCTTTGCTTCCATA 58.917 50.000 0.00 0.00 0.00 2.74
3724 5970 1.062587 CGCGTTCCTTTGCTTCCATAG 59.937 52.381 0.00 0.00 0.00 2.23
3744 5990 1.135046 CGTCCAGCAGATTAGCATCG 58.865 55.000 0.00 0.00 36.85 3.84
3745 5991 0.864455 GTCCAGCAGATTAGCATCGC 59.136 55.000 0.00 0.00 36.85 4.58
3746 5992 0.598419 TCCAGCAGATTAGCATCGCG 60.598 55.000 0.00 0.00 35.42 5.87
3747 5993 0.598419 CCAGCAGATTAGCATCGCGA 60.598 55.000 13.09 13.09 35.42 5.87
3748 5994 1.211743 CAGCAGATTAGCATCGCGAA 58.788 50.000 15.24 0.00 35.42 4.70
3749 5995 1.594397 CAGCAGATTAGCATCGCGAAA 59.406 47.619 15.24 2.34 35.42 3.46
3750 5996 1.863454 AGCAGATTAGCATCGCGAAAG 59.137 47.619 15.24 10.59 35.42 2.62
3751 5997 1.594862 GCAGATTAGCATCGCGAAAGT 59.405 47.619 15.24 2.28 34.17 2.66
3752 5998 2.598439 GCAGATTAGCATCGCGAAAGTG 60.598 50.000 15.24 8.63 44.62 3.16
3753 5999 2.604914 CAGATTAGCATCGCGAAAGTGT 59.395 45.455 15.24 3.63 43.46 3.55
3754 6000 2.860735 AGATTAGCATCGCGAAAGTGTC 59.139 45.455 15.24 7.77 43.46 3.67
3755 6001 2.073117 TTAGCATCGCGAAAGTGTCA 57.927 45.000 15.24 0.00 43.46 3.58
3756 6002 2.073117 TAGCATCGCGAAAGTGTCAA 57.927 45.000 15.24 0.00 43.46 3.18
3757 6003 1.225855 AGCATCGCGAAAGTGTCAAA 58.774 45.000 15.24 0.00 43.46 2.69
3758 6004 1.195448 AGCATCGCGAAAGTGTCAAAG 59.805 47.619 15.24 0.00 43.46 2.77
3759 6005 1.595609 CATCGCGAAAGTGTCAAAGC 58.404 50.000 15.24 0.00 43.46 3.51
3760 6006 0.517316 ATCGCGAAAGTGTCAAAGCC 59.483 50.000 15.24 0.00 43.46 4.35
3761 6007 0.531974 TCGCGAAAGTGTCAAAGCCT 60.532 50.000 6.20 0.00 43.46 4.58
3762 6008 0.307760 CGCGAAAGTGTCAAAGCCTT 59.692 50.000 0.00 0.00 36.71 4.35
3763 6009 1.268539 CGCGAAAGTGTCAAAGCCTTT 60.269 47.619 0.00 0.00 36.71 3.11
3764 6010 2.385315 GCGAAAGTGTCAAAGCCTTTC 58.615 47.619 0.00 0.00 40.27 2.62
3765 6011 2.858646 GCGAAAGTGTCAAAGCCTTTCC 60.859 50.000 7.65 0.24 40.46 3.13
3766 6012 2.602217 CGAAAGTGTCAAAGCCTTTCCG 60.602 50.000 7.65 1.94 40.46 4.30
3767 6013 2.341846 AAGTGTCAAAGCCTTTCCGA 57.658 45.000 0.00 0.00 0.00 4.55
3768 6014 1.884235 AGTGTCAAAGCCTTTCCGAG 58.116 50.000 0.00 0.00 0.00 4.63
3769 6015 1.416401 AGTGTCAAAGCCTTTCCGAGA 59.584 47.619 0.00 0.00 0.00 4.04
3770 6016 2.039084 AGTGTCAAAGCCTTTCCGAGAT 59.961 45.455 0.00 0.00 0.00 2.75
3771 6017 2.814336 GTGTCAAAGCCTTTCCGAGATT 59.186 45.455 0.00 0.00 0.00 2.40
3772 6018 2.813754 TGTCAAAGCCTTTCCGAGATTG 59.186 45.455 0.00 0.00 0.00 2.67
3773 6019 1.812571 TCAAAGCCTTTCCGAGATTGC 59.187 47.619 0.00 0.00 0.00 3.56
3774 6020 1.815003 CAAAGCCTTTCCGAGATTGCT 59.185 47.619 0.00 0.00 0.00 3.91
3775 6021 2.206576 AAGCCTTTCCGAGATTGCTT 57.793 45.000 0.00 0.00 34.45 3.91
3776 6022 3.350219 AAGCCTTTCCGAGATTGCTTA 57.650 42.857 0.00 0.00 37.29 3.09
3777 6023 3.567478 AGCCTTTCCGAGATTGCTTAT 57.433 42.857 0.00 0.00 0.00 1.73
3778 6024 3.471680 AGCCTTTCCGAGATTGCTTATC 58.528 45.455 0.00 0.00 0.00 1.75
3779 6025 3.135530 AGCCTTTCCGAGATTGCTTATCT 59.864 43.478 2.13 2.13 46.41 1.98
3780 6026 4.345257 AGCCTTTCCGAGATTGCTTATCTA 59.655 41.667 2.47 0.00 43.75 1.98
3781 6027 5.012561 AGCCTTTCCGAGATTGCTTATCTAT 59.987 40.000 2.47 0.00 43.75 1.98
3782 6028 5.703130 GCCTTTCCGAGATTGCTTATCTATT 59.297 40.000 2.47 0.00 43.75 1.73
3783 6029 6.128418 GCCTTTCCGAGATTGCTTATCTATTC 60.128 42.308 2.47 0.00 43.75 1.75
3784 6030 7.158021 CCTTTCCGAGATTGCTTATCTATTCT 58.842 38.462 2.47 0.00 43.75 2.40
3785 6031 7.659390 CCTTTCCGAGATTGCTTATCTATTCTT 59.341 37.037 2.47 0.00 43.75 2.52
3786 6032 8.964476 TTTCCGAGATTGCTTATCTATTCTTT 57.036 30.769 2.47 0.00 43.75 2.52
3787 6033 8.964476 TTCCGAGATTGCTTATCTATTCTTTT 57.036 30.769 2.47 0.00 43.75 2.27
3788 6034 8.594881 TCCGAGATTGCTTATCTATTCTTTTC 57.405 34.615 2.47 0.00 43.75 2.29
3789 6035 7.657761 TCCGAGATTGCTTATCTATTCTTTTCC 59.342 37.037 2.47 0.00 43.75 3.13
3790 6036 7.659390 CCGAGATTGCTTATCTATTCTTTTCCT 59.341 37.037 2.47 0.00 43.75 3.36
3791 6037 9.698309 CGAGATTGCTTATCTATTCTTTTCCTA 57.302 33.333 2.47 0.00 43.75 2.94
3793 6039 9.500785 AGATTGCTTATCTATTCTTTTCCTAGC 57.499 33.333 0.75 0.00 41.89 3.42
3794 6040 9.500785 GATTGCTTATCTATTCTTTTCCTAGCT 57.499 33.333 0.00 0.00 0.00 3.32
3795 6041 9.859152 ATTGCTTATCTATTCTTTTCCTAGCTT 57.141 29.630 0.00 0.00 0.00 3.74
3796 6042 9.686683 TTGCTTATCTATTCTTTTCCTAGCTTT 57.313 29.630 0.00 0.00 0.00 3.51
3797 6043 9.331282 TGCTTATCTATTCTTTTCCTAGCTTTC 57.669 33.333 0.00 0.00 0.00 2.62
3798 6044 8.491950 GCTTATCTATTCTTTTCCTAGCTTTCG 58.508 37.037 0.00 0.00 0.00 3.46
3799 6045 9.535878 CTTATCTATTCTTTTCCTAGCTTTCGT 57.464 33.333 0.00 0.00 0.00 3.85
3800 6046 9.530633 TTATCTATTCTTTTCCTAGCTTTCGTC 57.469 33.333 0.00 0.00 0.00 4.20
3801 6047 6.338937 TCTATTCTTTTCCTAGCTTTCGTCC 58.661 40.000 0.00 0.00 0.00 4.79
3802 6048 4.345859 TTCTTTTCCTAGCTTTCGTCCA 57.654 40.909 0.00 0.00 0.00 4.02
3803 6049 3.660865 TCTTTTCCTAGCTTTCGTCCAC 58.339 45.455 0.00 0.00 0.00 4.02
3804 6050 2.467566 TTTCCTAGCTTTCGTCCACC 57.532 50.000 0.00 0.00 0.00 4.61
3805 6051 1.344065 TTCCTAGCTTTCGTCCACCA 58.656 50.000 0.00 0.00 0.00 4.17
3806 6052 0.606604 TCCTAGCTTTCGTCCACCAC 59.393 55.000 0.00 0.00 0.00 4.16
3807 6053 0.608640 CCTAGCTTTCGTCCACCACT 59.391 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.974980 AAACAACAGTTTAAACATATAGGTTGG 57.025 29.630 20.06 10.40 37.87 3.77
7 8 9.744468 GGAGTCAAAACAACAGTTTAAACATAT 57.256 29.630 20.06 2.40 34.53 1.78
8 9 8.962679 AGGAGTCAAAACAACAGTTTAAACATA 58.037 29.630 20.06 0.00 34.53 2.29
9 10 7.836842 AGGAGTCAAAACAACAGTTTAAACAT 58.163 30.769 20.06 5.27 34.53 2.71
10 11 7.222000 AGGAGTCAAAACAACAGTTTAAACA 57.778 32.000 20.06 0.00 34.53 2.83
11 12 8.528917 AAAGGAGTCAAAACAACAGTTTAAAC 57.471 30.769 10.47 10.47 34.53 2.01
43 44 9.537192 TGAATTTTTACGTTTCTCTTCTGTAGA 57.463 29.630 0.00 0.00 0.00 2.59
44 45 9.798885 CTGAATTTTTACGTTTCTCTTCTGTAG 57.201 33.333 0.00 0.00 0.00 2.74
45 46 8.770828 CCTGAATTTTTACGTTTCTCTTCTGTA 58.229 33.333 0.00 0.00 0.00 2.74
46 47 7.255139 CCCTGAATTTTTACGTTTCTCTTCTGT 60.255 37.037 0.00 0.00 0.00 3.41
47 48 7.078228 CCCTGAATTTTTACGTTTCTCTTCTG 58.922 38.462 0.00 0.00 0.00 3.02
48 49 6.771267 ACCCTGAATTTTTACGTTTCTCTTCT 59.229 34.615 0.00 0.00 0.00 2.85
49 50 6.967135 ACCCTGAATTTTTACGTTTCTCTTC 58.033 36.000 0.00 0.00 0.00 2.87
50 51 6.544564 TGACCCTGAATTTTTACGTTTCTCTT 59.455 34.615 0.00 0.00 0.00 2.85
51 52 6.059484 TGACCCTGAATTTTTACGTTTCTCT 58.941 36.000 0.00 0.00 0.00 3.10
52 53 6.308371 TGACCCTGAATTTTTACGTTTCTC 57.692 37.500 0.00 0.00 0.00 2.87
53 54 6.095720 TGTTGACCCTGAATTTTTACGTTTCT 59.904 34.615 0.00 0.00 0.00 2.52
54 55 6.267070 TGTTGACCCTGAATTTTTACGTTTC 58.733 36.000 0.00 0.00 0.00 2.78
55 56 6.095720 TCTGTTGACCCTGAATTTTTACGTTT 59.904 34.615 0.00 0.00 0.00 3.60
56 57 5.591067 TCTGTTGACCCTGAATTTTTACGTT 59.409 36.000 0.00 0.00 0.00 3.99
57 58 5.127491 TCTGTTGACCCTGAATTTTTACGT 58.873 37.500 0.00 0.00 0.00 3.57
58 59 5.682943 TCTGTTGACCCTGAATTTTTACG 57.317 39.130 0.00 0.00 0.00 3.18
59 60 8.710835 TTTTTCTGTTGACCCTGAATTTTTAC 57.289 30.769 0.00 0.00 0.00 2.01
113 114 9.381038 TGGCCTCTATATTGAACTTAATAGAGT 57.619 33.333 3.32 0.00 43.15 3.24
118 119 9.082313 CCAAATGGCCTCTATATTGAACTTAAT 57.918 33.333 3.32 0.00 0.00 1.40
119 120 8.278639 TCCAAATGGCCTCTATATTGAACTTAA 58.721 33.333 3.32 0.00 34.44 1.85
120 121 7.811282 TCCAAATGGCCTCTATATTGAACTTA 58.189 34.615 3.32 0.00 34.44 2.24
121 122 6.672593 TCCAAATGGCCTCTATATTGAACTT 58.327 36.000 3.32 0.00 34.44 2.66
122 123 6.266131 TCCAAATGGCCTCTATATTGAACT 57.734 37.500 3.32 0.00 34.44 3.01
123 124 7.530426 AATCCAAATGGCCTCTATATTGAAC 57.470 36.000 3.32 0.00 34.44 3.18
124 125 9.300681 CTAAATCCAAATGGCCTCTATATTGAA 57.699 33.333 3.32 0.00 34.44 2.69
125 126 7.890127 CCTAAATCCAAATGGCCTCTATATTGA 59.110 37.037 3.32 0.00 34.44 2.57
126 127 7.363268 GCCTAAATCCAAATGGCCTCTATATTG 60.363 40.741 3.32 0.15 37.81 1.90
127 128 6.665248 GCCTAAATCCAAATGGCCTCTATATT 59.335 38.462 3.32 0.00 37.81 1.28
128 129 6.190587 GCCTAAATCCAAATGGCCTCTATAT 58.809 40.000 3.32 0.00 37.81 0.86
129 130 5.570320 GCCTAAATCCAAATGGCCTCTATA 58.430 41.667 3.32 0.00 37.81 1.31
130 131 4.411013 GCCTAAATCCAAATGGCCTCTAT 58.589 43.478 3.32 0.00 37.81 1.98
131 132 3.832527 GCCTAAATCCAAATGGCCTCTA 58.167 45.455 3.32 0.00 37.81 2.43
132 133 2.670939 GCCTAAATCCAAATGGCCTCT 58.329 47.619 3.32 0.00 37.81 3.69
136 137 2.742856 GCAAGGCCTAAATCCAAATGGC 60.743 50.000 5.16 0.00 42.56 4.40
137 138 2.158914 GGCAAGGCCTAAATCCAAATGG 60.159 50.000 5.16 0.00 46.69 3.16
138 139 3.183793 GGCAAGGCCTAAATCCAAATG 57.816 47.619 5.16 0.00 46.69 2.32
185 186 6.059484 TGGAACTAACCTTAGACAACTTTGG 58.941 40.000 0.00 0.00 34.84 3.28
199 202 7.696992 TGACCTTCATTTTATGGAACTAACC 57.303 36.000 0.00 0.00 0.00 2.85
219 222 0.752658 AGGCTTGCCAACTTTTGACC 59.247 50.000 14.54 0.00 0.00 4.02
224 227 5.551305 ATTTCTTTAGGCTTGCCAACTTT 57.449 34.783 14.54 0.00 0.00 2.66
261 264 3.243267 GGACCCACATAACAAACACACAC 60.243 47.826 0.00 0.00 0.00 3.82
264 267 2.175931 AGGGACCCACATAACAAACACA 59.824 45.455 14.60 0.00 0.00 3.72
265 268 2.871453 AGGGACCCACATAACAAACAC 58.129 47.619 14.60 0.00 0.00 3.32
269 272 3.010696 TGCATTAGGGACCCACATAACAA 59.989 43.478 14.60 0.00 0.00 2.83
272 275 2.422803 GCTGCATTAGGGACCCACATAA 60.423 50.000 14.60 2.99 0.00 1.90
315 318 4.469586 ACAAGTTTGACCAATTTGGAAGGT 59.530 37.500 22.19 0.00 40.96 3.50
316 319 5.022282 ACAAGTTTGACCAATTTGGAAGG 57.978 39.130 22.19 5.08 40.96 3.46
321 324 6.507023 AGCTTAGACAAGTTTGACCAATTTG 58.493 36.000 0.00 0.00 34.00 2.32
330 333 8.012241 GTCACATCTAAAGCTTAGACAAGTTTG 58.988 37.037 0.00 0.82 35.61 2.93
348 351 5.171339 AGTTGCCTTAGATTGTCACATCT 57.829 39.130 0.00 0.00 0.00 2.90
349 352 7.928706 ACTATAGTTGCCTTAGATTGTCACATC 59.071 37.037 0.00 0.00 0.00 3.06
350 353 7.796054 ACTATAGTTGCCTTAGATTGTCACAT 58.204 34.615 0.00 0.00 0.00 3.21
351 354 7.093509 TGACTATAGTTGCCTTAGATTGTCACA 60.094 37.037 6.88 0.00 30.76 3.58
352 355 7.222999 GTGACTATAGTTGCCTTAGATTGTCAC 59.777 40.741 6.88 10.52 42.01 3.67
353 356 7.093509 TGTGACTATAGTTGCCTTAGATTGTCA 60.094 37.037 6.88 0.00 32.43 3.58
354 357 7.265673 TGTGACTATAGTTGCCTTAGATTGTC 58.734 38.462 6.88 0.00 0.00 3.18
379 382 9.855021 GTTCATATACTATTGGTTGTTTGCTTT 57.145 29.630 0.00 0.00 0.00 3.51
409 412 7.865385 TGTTTGATCATGTTAAACTAGTTTGCC 59.135 33.333 27.40 18.20 37.25 4.52
500 503 6.273260 TCATAGCTTAAAGATAGCCCCTTGAT 59.727 38.462 0.00 0.00 39.47 2.57
563 570 2.612212 TCTCGGAACAAGTTTGCTTCAC 59.388 45.455 0.00 0.00 31.49 3.18
594 601 5.607119 ACACACACGGATCACTTAATTTC 57.393 39.130 0.00 0.00 0.00 2.17
698 705 3.807538 CTGTCCTGGCGCATGTGC 61.808 66.667 23.05 23.05 37.78 4.57
712 719 7.723616 AGATCTACTAGCTGACAATGTATCTGT 59.276 37.037 0.00 0.00 0.00 3.41
727 734 7.429633 TGCTTGTTTCATCTAGATCTACTAGC 58.570 38.462 23.10 23.10 45.78 3.42
785 795 2.537128 CGATCTAATCTACCCGCGATCG 60.537 54.545 11.69 11.69 42.46 3.69
786 796 2.676839 TCGATCTAATCTACCCGCGATC 59.323 50.000 8.23 0.00 0.00 3.69
787 797 2.708051 TCGATCTAATCTACCCGCGAT 58.292 47.619 8.23 0.00 0.00 4.58
789 799 2.161808 ACATCGATCTAATCTACCCGCG 59.838 50.000 0.00 0.00 0.00 6.46
791 801 4.636648 AGCTACATCGATCTAATCTACCCG 59.363 45.833 0.00 0.00 0.00 5.28
792 802 5.648526 TGAGCTACATCGATCTAATCTACCC 59.351 44.000 0.00 0.00 0.00 3.69
793 803 6.373216 AGTGAGCTACATCGATCTAATCTACC 59.627 42.308 0.00 0.00 0.00 3.18
795 805 6.937465 ACAGTGAGCTACATCGATCTAATCTA 59.063 38.462 0.00 0.00 0.00 1.98
796 806 5.767665 ACAGTGAGCTACATCGATCTAATCT 59.232 40.000 0.00 0.00 0.00 2.40
797 807 6.007936 ACAGTGAGCTACATCGATCTAATC 57.992 41.667 0.00 0.00 0.00 1.75
813 824 3.786101 CGCCATCGGAACAGTGAG 58.214 61.111 0.00 0.00 0.00 3.51
885 896 3.767230 CTCACTTCGTGCGTGCGG 61.767 66.667 1.42 0.00 32.98 5.69
1065 1082 1.604023 AACTCACCGACTCTCGCCT 60.604 57.895 0.00 0.00 38.82 5.52
1162 1179 4.899239 GCATGCTCCTCCCGTCCG 62.899 72.222 11.37 0.00 0.00 4.79
1222 1242 2.894387 GACATCTCCTGCGCCTGC 60.894 66.667 4.18 0.00 43.20 4.85
1435 1455 2.483877 GAGATGCATGGTCGTTGTCAAA 59.516 45.455 2.46 0.00 0.00 2.69
1533 1580 4.842139 AAATTGATCGAGTCGTTAGCAC 57.158 40.909 13.12 0.20 0.00 4.40
1551 1598 3.054139 TGCTGAGCTCCCACATAGAAAAT 60.054 43.478 12.15 0.00 0.00 1.82
1560 1607 2.360475 GGGTTGCTGAGCTCCCAC 60.360 66.667 24.99 9.81 40.70 4.61
1586 1633 8.729756 TGTACGTAGTTGTTTTGCTATCTACTA 58.270 33.333 0.00 0.00 37.78 1.82
1587 1634 7.596494 TGTACGTAGTTGTTTTGCTATCTACT 58.404 34.615 0.00 0.00 37.78 2.57
1588 1635 7.801547 TGTACGTAGTTGTTTTGCTATCTAC 57.198 36.000 0.00 0.00 37.78 2.59
1726 1835 1.208293 CCTTCCTTCTGCCCTGTAGTC 59.792 57.143 0.00 0.00 0.00 2.59
1729 1838 1.078823 TCTCCTTCCTTCTGCCCTGTA 59.921 52.381 0.00 0.00 0.00 2.74
1738 1847 4.265073 TGCTTATTGCTTCTCCTTCCTTC 58.735 43.478 0.00 0.00 43.37 3.46
1743 1852 4.159135 CCAACATGCTTATTGCTTCTCCTT 59.841 41.667 0.00 0.00 43.37 3.36
1808 1924 3.089284 CGGCTCCTAAATTTCAAACCCT 58.911 45.455 0.00 0.00 0.00 4.34
1920 2041 7.535139 CCGAAATGAATCAGCCTAAGTTTTTA 58.465 34.615 0.00 0.00 0.00 1.52
1970 2096 1.382420 TGCCCACTTGCCCTGTTTT 60.382 52.632 0.00 0.00 0.00 2.43
1977 2103 2.935740 GCTTTCCTGCCCACTTGCC 61.936 63.158 0.00 0.00 0.00 4.52
2663 2873 4.767255 CCGCTGCTGAGGTCACCC 62.767 72.222 5.16 0.00 0.00 4.61
2780 2990 4.689062 TCTTCCTTCCTTGTCAGTATCCT 58.311 43.478 0.00 0.00 0.00 3.24
2848 3062 2.223711 ACCAAACAATTTGCTGTCCGTC 60.224 45.455 0.00 0.00 39.31 4.79
2972 5147 7.513371 TGGTTTACCAAATTCGAGTTTACAT 57.487 32.000 5.52 0.00 44.35 2.29
3082 5257 7.169308 CGTAAAACTGAGACAGTGTACATCTTT 59.831 37.037 17.73 5.48 44.62 2.52
3089 5264 4.338964 TCCACGTAAAACTGAGACAGTGTA 59.661 41.667 5.17 0.00 44.62 2.90
3119 5294 9.370126 GTGACGCATTTGATTTTATGATACTAC 57.630 33.333 0.00 0.00 0.00 2.73
3124 5339 5.879237 ACGTGACGCATTTGATTTTATGAT 58.121 33.333 4.25 0.00 0.00 2.45
3128 5343 8.059502 GTCATATACGTGACGCATTTGATTTTA 58.940 33.333 13.00 0.00 39.12 1.52
3158 5373 1.915141 ATGGGCCTTGTCTTCTTGTG 58.085 50.000 4.53 0.00 0.00 3.33
3173 5388 5.088680 ACATGCCAGAATTTTGTAATGGG 57.911 39.130 10.82 0.00 0.00 4.00
3176 5391 6.532826 ACCAAACATGCCAGAATTTTGTAAT 58.467 32.000 0.00 0.00 0.00 1.89
3225 5443 2.383608 GGAGCTTCCCCACCTGTTA 58.616 57.895 0.00 0.00 0.00 2.41
3267 5486 8.752187 ACACATGCTTATGGAATTCAACTTTAT 58.248 29.630 7.93 0.00 0.00 1.40
3273 5518 7.066887 ACGATTACACATGCTTATGGAATTCAA 59.933 33.333 7.93 0.00 0.00 2.69
3280 5525 5.929697 ATGACGATTACACATGCTTATGG 57.070 39.130 0.00 0.00 0.00 2.74
3289 5534 8.350722 GTTCCTATCTCTTATGACGATTACACA 58.649 37.037 0.00 0.00 0.00 3.72
3300 5545 5.047731 TCTCATGGCGTTCCTATCTCTTATG 60.048 44.000 0.00 0.00 0.00 1.90
3324 5570 2.630580 TGGAACAAAAATAAGCCGCCTT 59.369 40.909 0.00 0.00 31.92 4.35
3332 5578 7.269316 GGGTGAAGAAACTGGAACAAAAATAA 58.731 34.615 0.00 0.00 38.70 1.40
3334 5580 5.670485 GGGTGAAGAAACTGGAACAAAAAT 58.330 37.500 0.00 0.00 38.70 1.82
3345 5591 2.484947 GGAGACAACGGGTGAAGAAACT 60.485 50.000 0.00 0.00 0.00 2.66
3355 5601 0.460987 GATGCTCTGGAGACAACGGG 60.461 60.000 1.35 0.00 42.06 5.28
3359 5605 1.552337 GACCTGATGCTCTGGAGACAA 59.448 52.381 13.40 0.00 42.06 3.18
3363 5609 1.829849 TGAAGACCTGATGCTCTGGAG 59.170 52.381 13.40 0.00 37.65 3.86
3409 5655 0.937304 CAGACAACAGAACCACCACG 59.063 55.000 0.00 0.00 0.00 4.94
3447 5693 2.068834 TTGGCGTACCCTTGGAAAAA 57.931 45.000 2.61 0.00 33.59 1.94
3448 5694 2.296073 ATTGGCGTACCCTTGGAAAA 57.704 45.000 2.61 0.00 33.59 2.29
3449 5695 2.942306 GCTATTGGCGTACCCTTGGAAA 60.942 50.000 2.61 0.00 33.59 3.13
3450 5696 1.407712 GCTATTGGCGTACCCTTGGAA 60.408 52.381 2.61 0.00 33.59 3.53
3451 5697 0.179468 GCTATTGGCGTACCCTTGGA 59.821 55.000 2.61 0.00 33.59 3.53
3452 5698 2.702847 GCTATTGGCGTACCCTTGG 58.297 57.895 2.61 0.00 33.59 3.61
3462 5708 2.528041 AGCTAAGGTACGCTATTGGC 57.472 50.000 0.00 0.00 34.11 4.52
3463 5709 7.600065 TCTATAAAGCTAAGGTACGCTATTGG 58.400 38.462 0.00 0.00 34.96 3.16
3464 5710 9.130312 CTTCTATAAAGCTAAGGTACGCTATTG 57.870 37.037 0.00 0.00 34.96 1.90
3465 5711 9.075678 TCTTCTATAAAGCTAAGGTACGCTATT 57.924 33.333 0.00 0.00 34.96 1.73
3466 5712 8.632906 TCTTCTATAAAGCTAAGGTACGCTAT 57.367 34.615 0.00 0.00 34.96 2.97
3467 5713 7.935755 TCTCTTCTATAAAGCTAAGGTACGCTA 59.064 37.037 0.00 0.00 34.96 4.26
3468 5714 6.771749 TCTCTTCTATAAAGCTAAGGTACGCT 59.228 38.462 0.00 0.00 38.30 5.07
3469 5715 6.968250 TCTCTTCTATAAAGCTAAGGTACGC 58.032 40.000 0.00 0.00 0.00 4.42
3470 5716 8.380743 TCTCTCTTCTATAAAGCTAAGGTACG 57.619 38.462 0.00 0.00 0.00 3.67
3501 5747 9.958234 CTAGCGCATATGTAATCTCTTGTATAT 57.042 33.333 11.47 0.00 0.00 0.86
3502 5748 8.957466 ACTAGCGCATATGTAATCTCTTGTATA 58.043 33.333 11.47 0.00 0.00 1.47
3503 5749 7.831753 ACTAGCGCATATGTAATCTCTTGTAT 58.168 34.615 11.47 0.00 0.00 2.29
3504 5750 7.215719 ACTAGCGCATATGTAATCTCTTGTA 57.784 36.000 11.47 0.00 0.00 2.41
3505 5751 6.090483 ACTAGCGCATATGTAATCTCTTGT 57.910 37.500 11.47 0.00 0.00 3.16
3506 5752 8.023706 TCTAACTAGCGCATATGTAATCTCTTG 58.976 37.037 11.47 0.00 0.00 3.02
3507 5753 8.112016 TCTAACTAGCGCATATGTAATCTCTT 57.888 34.615 11.47 0.00 0.00 2.85
3508 5754 7.689446 TCTAACTAGCGCATATGTAATCTCT 57.311 36.000 11.47 0.00 0.00 3.10
3509 5755 7.971168 ACATCTAACTAGCGCATATGTAATCTC 59.029 37.037 11.47 0.00 0.00 2.75
3510 5756 7.831753 ACATCTAACTAGCGCATATGTAATCT 58.168 34.615 11.47 0.00 0.00 2.40
3511 5757 7.755373 TGACATCTAACTAGCGCATATGTAATC 59.245 37.037 11.47 0.00 0.00 1.75
3512 5758 7.542477 GTGACATCTAACTAGCGCATATGTAAT 59.458 37.037 11.47 0.00 0.00 1.89
3513 5759 6.861572 GTGACATCTAACTAGCGCATATGTAA 59.138 38.462 11.47 0.00 0.00 2.41
3514 5760 6.016610 TGTGACATCTAACTAGCGCATATGTA 60.017 38.462 11.47 0.00 0.00 2.29
3515 5761 5.221244 TGTGACATCTAACTAGCGCATATGT 60.221 40.000 11.47 7.99 0.00 2.29
3516 5762 5.222631 TGTGACATCTAACTAGCGCATATG 58.777 41.667 11.47 0.00 0.00 1.78
3517 5763 5.453567 TGTGACATCTAACTAGCGCATAT 57.546 39.130 11.47 0.00 0.00 1.78
3518 5764 4.911514 TGTGACATCTAACTAGCGCATA 57.088 40.909 11.47 0.00 0.00 3.14
3519 5765 3.801114 TGTGACATCTAACTAGCGCAT 57.199 42.857 11.47 0.00 0.00 4.73
3520 5766 3.119137 ACATGTGACATCTAACTAGCGCA 60.119 43.478 11.47 0.00 0.00 6.09
3521 5767 3.448686 ACATGTGACATCTAACTAGCGC 58.551 45.455 0.00 0.00 0.00 5.92
3522 5768 3.726235 CGACATGTGACATCTAACTAGCG 59.274 47.826 1.15 0.00 0.00 4.26
3523 5769 4.735822 GTCGACATGTGACATCTAACTAGC 59.264 45.833 11.55 0.00 36.37 3.42
3524 5770 5.274718 GGTCGACATGTGACATCTAACTAG 58.725 45.833 18.91 0.00 38.10 2.57
3525 5771 4.097437 GGGTCGACATGTGACATCTAACTA 59.903 45.833 18.91 0.00 38.10 2.24
3526 5772 3.119101 GGGTCGACATGTGACATCTAACT 60.119 47.826 18.91 0.00 38.10 2.24
3527 5773 3.119101 AGGGTCGACATGTGACATCTAAC 60.119 47.826 18.91 9.51 38.10 2.34
3528 5774 3.096852 AGGGTCGACATGTGACATCTAA 58.903 45.455 18.91 0.00 38.10 2.10
3529 5775 2.735151 AGGGTCGACATGTGACATCTA 58.265 47.619 18.91 0.00 38.10 1.98
3530 5776 1.561643 AGGGTCGACATGTGACATCT 58.438 50.000 18.91 17.01 38.10 2.90
3531 5777 3.119101 AGTTAGGGTCGACATGTGACATC 60.119 47.826 18.91 15.71 38.10 3.06
3532 5778 2.832129 AGTTAGGGTCGACATGTGACAT 59.168 45.455 18.91 15.17 38.10 3.06
3533 5779 2.244695 AGTTAGGGTCGACATGTGACA 58.755 47.619 18.91 0.00 38.10 3.58
3534 5780 4.421948 CTTAGTTAGGGTCGACATGTGAC 58.578 47.826 18.91 11.26 35.60 3.67
3535 5781 3.119245 GCTTAGTTAGGGTCGACATGTGA 60.119 47.826 18.91 0.00 0.00 3.58
3536 5782 3.187700 GCTTAGTTAGGGTCGACATGTG 58.812 50.000 18.91 0.00 0.00 3.21
3537 5783 2.167900 GGCTTAGTTAGGGTCGACATGT 59.832 50.000 18.91 0.00 0.00 3.21
3538 5784 2.431057 AGGCTTAGTTAGGGTCGACATG 59.569 50.000 18.91 0.00 0.00 3.21
3539 5785 2.694109 GAGGCTTAGTTAGGGTCGACAT 59.306 50.000 18.91 7.85 0.00 3.06
3540 5786 2.097825 GAGGCTTAGTTAGGGTCGACA 58.902 52.381 18.91 0.00 0.00 4.35
3541 5787 1.408340 GGAGGCTTAGTTAGGGTCGAC 59.592 57.143 7.13 7.13 0.00 4.20
3542 5788 1.006281 TGGAGGCTTAGTTAGGGTCGA 59.994 52.381 0.00 0.00 0.00 4.20
3543 5789 1.136500 GTGGAGGCTTAGTTAGGGTCG 59.864 57.143 0.00 0.00 0.00 4.79
3544 5790 2.093606 GTGTGGAGGCTTAGTTAGGGTC 60.094 54.545 0.00 0.00 0.00 4.46
3545 5791 1.907255 GTGTGGAGGCTTAGTTAGGGT 59.093 52.381 0.00 0.00 0.00 4.34
3546 5792 1.209747 GGTGTGGAGGCTTAGTTAGGG 59.790 57.143 0.00 0.00 0.00 3.53
3547 5793 1.906574 TGGTGTGGAGGCTTAGTTAGG 59.093 52.381 0.00 0.00 0.00 2.69
3548 5794 2.567615 AGTGGTGTGGAGGCTTAGTTAG 59.432 50.000 0.00 0.00 0.00 2.34
3549 5795 2.565834 GAGTGGTGTGGAGGCTTAGTTA 59.434 50.000 0.00 0.00 0.00 2.24
3550 5796 1.348036 GAGTGGTGTGGAGGCTTAGTT 59.652 52.381 0.00 0.00 0.00 2.24
3551 5797 0.977395 GAGTGGTGTGGAGGCTTAGT 59.023 55.000 0.00 0.00 0.00 2.24
3552 5798 0.250513 GGAGTGGTGTGGAGGCTTAG 59.749 60.000 0.00 0.00 0.00 2.18
3553 5799 1.198759 GGGAGTGGTGTGGAGGCTTA 61.199 60.000 0.00 0.00 0.00 3.09
3554 5800 2.529744 GGGAGTGGTGTGGAGGCTT 61.530 63.158 0.00 0.00 0.00 4.35
3555 5801 2.106923 TAGGGAGTGGTGTGGAGGCT 62.107 60.000 0.00 0.00 0.00 4.58
3556 5802 1.612442 TAGGGAGTGGTGTGGAGGC 60.612 63.158 0.00 0.00 0.00 4.70
3557 5803 1.617947 GCTAGGGAGTGGTGTGGAGG 61.618 65.000 0.00 0.00 0.00 4.30
3558 5804 0.616111 AGCTAGGGAGTGGTGTGGAG 60.616 60.000 0.00 0.00 0.00 3.86
3559 5805 0.614979 GAGCTAGGGAGTGGTGTGGA 60.615 60.000 0.00 0.00 0.00 4.02
3560 5806 0.616111 AGAGCTAGGGAGTGGTGTGG 60.616 60.000 0.00 0.00 0.00 4.17
3561 5807 1.751924 GTAGAGCTAGGGAGTGGTGTG 59.248 57.143 0.00 0.00 0.00 3.82
3562 5808 1.641714 AGTAGAGCTAGGGAGTGGTGT 59.358 52.381 0.00 0.00 0.00 4.16
3563 5809 2.303175 GAGTAGAGCTAGGGAGTGGTG 58.697 57.143 0.00 0.00 0.00 4.17
3564 5810 1.134037 CGAGTAGAGCTAGGGAGTGGT 60.134 57.143 0.00 0.00 0.00 4.16
3565 5811 1.141254 TCGAGTAGAGCTAGGGAGTGG 59.859 57.143 0.00 0.00 0.00 4.00
3566 5812 2.158871 AGTCGAGTAGAGCTAGGGAGTG 60.159 54.545 0.00 0.00 0.00 3.51
3567 5813 2.121129 AGTCGAGTAGAGCTAGGGAGT 58.879 52.381 0.00 0.00 0.00 3.85
3568 5814 2.922740 AGTCGAGTAGAGCTAGGGAG 57.077 55.000 0.00 0.00 0.00 4.30
3569 5815 3.307506 AGTAGTCGAGTAGAGCTAGGGA 58.692 50.000 0.00 0.00 0.00 4.20
3570 5816 3.322828 AGAGTAGTCGAGTAGAGCTAGGG 59.677 52.174 0.00 0.00 0.00 3.53
3571 5817 4.595762 AGAGTAGTCGAGTAGAGCTAGG 57.404 50.000 0.00 0.00 0.00 3.02
3572 5818 8.517878 AGTATTAGAGTAGTCGAGTAGAGCTAG 58.482 40.741 0.00 0.00 0.00 3.42
3573 5819 8.408043 AGTATTAGAGTAGTCGAGTAGAGCTA 57.592 38.462 0.00 0.48 0.00 3.32
3574 5820 7.294017 AGTATTAGAGTAGTCGAGTAGAGCT 57.706 40.000 0.00 1.41 0.00 4.09
3575 5821 9.643693 ATTAGTATTAGAGTAGTCGAGTAGAGC 57.356 37.037 0.00 0.00 0.00 4.09
3580 5826 9.054922 GGACAATTAGTATTAGAGTAGTCGAGT 57.945 37.037 0.00 0.00 0.00 4.18
3581 5827 9.275398 AGGACAATTAGTATTAGAGTAGTCGAG 57.725 37.037 0.00 0.00 0.00 4.04
3582 5828 9.270640 GAGGACAATTAGTATTAGAGTAGTCGA 57.729 37.037 0.00 0.00 0.00 4.20
3583 5829 8.505625 GGAGGACAATTAGTATTAGAGTAGTCG 58.494 40.741 0.00 0.00 0.00 4.18
3584 5830 9.352191 TGGAGGACAATTAGTATTAGAGTAGTC 57.648 37.037 0.00 0.00 0.00 2.59
3585 5831 9.710818 TTGGAGGACAATTAGTATTAGAGTAGT 57.289 33.333 0.00 0.00 33.18 2.73
3588 5834 9.892130 CTTTTGGAGGACAATTAGTATTAGAGT 57.108 33.333 0.00 0.00 39.21 3.24
3589 5835 8.831550 GCTTTTGGAGGACAATTAGTATTAGAG 58.168 37.037 0.00 0.00 39.21 2.43
3590 5836 8.548877 AGCTTTTGGAGGACAATTAGTATTAGA 58.451 33.333 0.00 0.00 39.21 2.10
3591 5837 8.738645 AGCTTTTGGAGGACAATTAGTATTAG 57.261 34.615 0.00 0.00 39.21 1.73
3592 5838 7.773690 GGAGCTTTTGGAGGACAATTAGTATTA 59.226 37.037 0.00 0.00 39.21 0.98
3593 5839 6.603599 GGAGCTTTTGGAGGACAATTAGTATT 59.396 38.462 0.00 0.00 39.21 1.89
3594 5840 6.122964 GGAGCTTTTGGAGGACAATTAGTAT 58.877 40.000 0.00 0.00 39.21 2.12
3595 5841 5.497474 GGAGCTTTTGGAGGACAATTAGTA 58.503 41.667 0.00 0.00 39.21 1.82
3596 5842 4.336280 GGAGCTTTTGGAGGACAATTAGT 58.664 43.478 0.00 0.00 39.21 2.24
3597 5843 3.696548 GGGAGCTTTTGGAGGACAATTAG 59.303 47.826 0.00 0.00 39.21 1.73
3598 5844 3.697166 GGGAGCTTTTGGAGGACAATTA 58.303 45.455 0.00 0.00 39.21 1.40
3599 5845 2.529632 GGGAGCTTTTGGAGGACAATT 58.470 47.619 0.00 0.00 39.21 2.32
3600 5846 1.614317 CGGGAGCTTTTGGAGGACAAT 60.614 52.381 0.00 0.00 39.21 2.71
3601 5847 0.250727 CGGGAGCTTTTGGAGGACAA 60.251 55.000 0.00 0.00 37.28 3.18
3602 5848 1.374947 CGGGAGCTTTTGGAGGACA 59.625 57.895 0.00 0.00 0.00 4.02
3603 5849 4.303257 CGGGAGCTTTTGGAGGAC 57.697 61.111 0.00 0.00 0.00 3.85
3620 5866 3.791586 GAGGACCTGGGCCAGAGC 61.792 72.222 34.84 23.64 32.44 4.09
3621 5867 2.284921 TGAGGACCTGGGCCAGAG 60.285 66.667 34.84 24.97 32.44 3.35
3622 5868 2.186873 ATCTGAGGACCTGGGCCAGA 62.187 60.000 34.84 16.55 38.12 3.86
3623 5869 1.692042 ATCTGAGGACCTGGGCCAG 60.692 63.158 27.04 27.04 0.00 4.85
3624 5870 1.690633 GATCTGAGGACCTGGGCCA 60.691 63.158 23.47 5.85 0.00 5.36
3625 5871 1.059006 ATGATCTGAGGACCTGGGCC 61.059 60.000 11.87 11.87 0.00 5.80
3626 5872 0.396060 GATGATCTGAGGACCTGGGC 59.604 60.000 0.00 0.00 0.00 5.36
3627 5873 1.798626 TGATGATCTGAGGACCTGGG 58.201 55.000 0.00 0.00 0.00 4.45
3628 5874 3.453717 TCTTTGATGATCTGAGGACCTGG 59.546 47.826 0.00 0.00 0.00 4.45
3629 5875 4.750021 TCTTTGATGATCTGAGGACCTG 57.250 45.455 0.00 0.00 0.00 4.00
3630 5876 4.967442 TGATCTTTGATGATCTGAGGACCT 59.033 41.667 0.00 0.00 42.30 3.85
3631 5877 5.287674 TGATCTTTGATGATCTGAGGACC 57.712 43.478 6.15 0.00 42.30 4.46
3632 5878 6.289834 ACATGATCTTTGATGATCTGAGGAC 58.710 40.000 0.00 0.00 42.30 3.85
3633 5879 6.496144 ACATGATCTTTGATGATCTGAGGA 57.504 37.500 0.00 0.00 42.30 3.71
3634 5880 6.649973 GGTACATGATCTTTGATGATCTGAGG 59.350 42.308 0.00 0.00 42.30 3.86
3635 5881 7.171167 GTGGTACATGATCTTTGATGATCTGAG 59.829 40.741 0.00 0.00 44.52 3.35
3636 5882 6.988580 GTGGTACATGATCTTTGATGATCTGA 59.011 38.462 0.00 0.00 44.52 3.27
3637 5883 6.204301 GGTGGTACATGATCTTTGATGATCTG 59.796 42.308 0.00 4.91 44.52 2.90
3638 5884 6.294473 GGTGGTACATGATCTTTGATGATCT 58.706 40.000 0.00 0.00 44.52 2.75
3639 5885 5.178252 CGGTGGTACATGATCTTTGATGATC 59.822 44.000 0.00 0.00 44.52 2.92
3640 5886 5.059161 CGGTGGTACATGATCTTTGATGAT 58.941 41.667 0.00 0.00 44.52 2.45
3641 5887 4.081142 ACGGTGGTACATGATCTTTGATGA 60.081 41.667 0.00 0.00 44.52 2.92
3642 5888 4.191544 ACGGTGGTACATGATCTTTGATG 58.808 43.478 0.00 0.00 44.52 3.07
3643 5889 4.487714 ACGGTGGTACATGATCTTTGAT 57.512 40.909 0.00 0.00 44.52 2.57
3644 5890 3.973206 ACGGTGGTACATGATCTTTGA 57.027 42.857 0.00 0.00 44.52 2.69
3645 5891 4.750098 GGATACGGTGGTACATGATCTTTG 59.250 45.833 0.00 0.00 44.52 2.77
3646 5892 4.202326 GGGATACGGTGGTACATGATCTTT 60.202 45.833 0.00 0.00 38.32 2.52
3647 5893 3.323979 GGGATACGGTGGTACATGATCTT 59.676 47.826 0.00 0.00 38.32 2.40
3648 5894 2.897969 GGGATACGGTGGTACATGATCT 59.102 50.000 0.00 0.00 38.32 2.75
3649 5895 2.631062 TGGGATACGGTGGTACATGATC 59.369 50.000 0.00 0.00 38.32 2.92
3650 5896 2.367567 GTGGGATACGGTGGTACATGAT 59.632 50.000 0.00 0.00 38.32 2.45
3651 5897 1.758280 GTGGGATACGGTGGTACATGA 59.242 52.381 0.00 0.00 38.32 3.07
3652 5898 1.760613 AGTGGGATACGGTGGTACATG 59.239 52.381 0.00 0.00 38.32 3.21
3653 5899 2.037144 GAGTGGGATACGGTGGTACAT 58.963 52.381 0.00 0.00 38.32 2.29
3654 5900 1.477553 GAGTGGGATACGGTGGTACA 58.522 55.000 0.00 0.00 37.60 2.90
3655 5901 0.383231 CGAGTGGGATACGGTGGTAC 59.617 60.000 0.00 0.00 37.60 3.34
3656 5902 1.386525 GCGAGTGGGATACGGTGGTA 61.387 60.000 0.00 0.00 37.60 3.25
3657 5903 2.718073 GCGAGTGGGATACGGTGGT 61.718 63.158 0.00 0.00 37.60 4.16
3658 5904 2.106332 GCGAGTGGGATACGGTGG 59.894 66.667 0.00 0.00 37.60 4.61
3659 5905 1.065928 GAGCGAGTGGGATACGGTG 59.934 63.158 0.00 0.00 37.85 4.94
3660 5906 0.683504 AAGAGCGAGTGGGATACGGT 60.684 55.000 0.00 0.00 40.29 4.83
3661 5907 0.249073 CAAGAGCGAGTGGGATACGG 60.249 60.000 0.00 0.00 37.60 4.02
3662 5908 0.738975 TCAAGAGCGAGTGGGATACG 59.261 55.000 0.00 0.00 37.60 3.06
3663 5909 2.362397 TGATCAAGAGCGAGTGGGATAC 59.638 50.000 0.00 0.00 0.00 2.24
3664 5910 2.666317 TGATCAAGAGCGAGTGGGATA 58.334 47.619 0.00 0.00 0.00 2.59
3665 5911 1.489481 TGATCAAGAGCGAGTGGGAT 58.511 50.000 0.00 0.00 0.00 3.85
3666 5912 1.137675 CATGATCAAGAGCGAGTGGGA 59.862 52.381 0.00 0.00 0.00 4.37
3667 5913 1.579698 CATGATCAAGAGCGAGTGGG 58.420 55.000 0.00 0.00 0.00 4.61
3668 5914 0.935898 GCATGATCAAGAGCGAGTGG 59.064 55.000 0.00 0.00 0.00 4.00
3669 5915 0.935898 GGCATGATCAAGAGCGAGTG 59.064 55.000 0.00 0.00 0.00 3.51
3670 5916 0.179062 GGGCATGATCAAGAGCGAGT 60.179 55.000 0.00 0.00 0.00 4.18
3671 5917 1.220169 CGGGCATGATCAAGAGCGAG 61.220 60.000 0.00 0.00 0.00 5.03
3672 5918 1.227350 CGGGCATGATCAAGAGCGA 60.227 57.895 0.00 0.00 0.00 4.93
3673 5919 1.522355 ACGGGCATGATCAAGAGCG 60.522 57.895 0.00 0.00 0.00 5.03
3674 5920 2.020131 CACGGGCATGATCAAGAGC 58.980 57.895 0.00 4.46 0.00 4.09
3675 5921 1.442526 GGCACGGGCATGATCAAGAG 61.443 60.000 13.89 0.00 43.71 2.85
3676 5922 1.451927 GGCACGGGCATGATCAAGA 60.452 57.895 13.89 0.00 43.71 3.02
3677 5923 3.113745 GGCACGGGCATGATCAAG 58.886 61.111 13.89 0.00 43.71 3.02
3690 5936 2.876645 CGCGAGAGTCTTCGGCAC 60.877 66.667 0.00 0.00 40.79 5.01
3691 5937 2.797866 GAACGCGAGAGTCTTCGGCA 62.798 60.000 15.93 0.00 40.79 5.69
3692 5938 2.126424 AACGCGAGAGTCTTCGGC 60.126 61.111 15.93 10.08 40.79 5.54
3693 5939 1.514443 GGAACGCGAGAGTCTTCGG 60.514 63.158 15.93 8.73 40.79 4.30
3694 5940 0.109689 AAGGAACGCGAGAGTCTTCG 60.110 55.000 15.93 12.37 43.23 3.79
3695 5941 1.721926 CAAAGGAACGCGAGAGTCTTC 59.278 52.381 15.93 4.44 0.00 2.87
3696 5942 1.784525 CAAAGGAACGCGAGAGTCTT 58.215 50.000 15.93 6.12 0.00 3.01
3697 5943 0.667792 GCAAAGGAACGCGAGAGTCT 60.668 55.000 15.93 0.00 0.00 3.24
3698 5944 0.667792 AGCAAAGGAACGCGAGAGTC 60.668 55.000 15.93 4.05 0.00 3.36
3699 5945 0.249911 AAGCAAAGGAACGCGAGAGT 60.250 50.000 15.93 0.00 0.00 3.24
3700 5946 0.440371 GAAGCAAAGGAACGCGAGAG 59.560 55.000 15.93 0.00 0.00 3.20
3701 5947 0.949105 GGAAGCAAAGGAACGCGAGA 60.949 55.000 15.93 0.00 0.00 4.04
3702 5948 1.227999 TGGAAGCAAAGGAACGCGAG 61.228 55.000 15.93 0.00 0.00 5.03
3703 5949 0.605319 ATGGAAGCAAAGGAACGCGA 60.605 50.000 15.93 0.00 0.00 5.87
3704 5950 1.062587 CTATGGAAGCAAAGGAACGCG 59.937 52.381 3.53 3.53 0.00 6.01
3705 5951 2.832672 CTATGGAAGCAAAGGAACGC 57.167 50.000 0.00 0.00 0.00 4.84
3716 5962 0.461548 TCTGCTGGACGCTATGGAAG 59.538 55.000 0.00 0.00 40.11 3.46
3717 5963 1.123077 ATCTGCTGGACGCTATGGAA 58.877 50.000 0.00 0.00 40.11 3.53
3718 5964 1.123077 AATCTGCTGGACGCTATGGA 58.877 50.000 0.00 0.00 40.11 3.41
3719 5965 2.681706 CTAATCTGCTGGACGCTATGG 58.318 52.381 0.00 0.00 40.11 2.74
3720 5966 2.064762 GCTAATCTGCTGGACGCTATG 58.935 52.381 0.00 0.00 40.11 2.23
3721 5967 1.688735 TGCTAATCTGCTGGACGCTAT 59.311 47.619 0.00 0.00 40.11 2.97
3722 5968 1.111277 TGCTAATCTGCTGGACGCTA 58.889 50.000 0.00 0.00 40.11 4.26
3723 5969 0.467384 ATGCTAATCTGCTGGACGCT 59.533 50.000 0.00 0.00 40.11 5.07
3724 5970 0.864455 GATGCTAATCTGCTGGACGC 59.136 55.000 0.00 0.00 39.77 5.19
3725 5971 1.135046 CGATGCTAATCTGCTGGACG 58.865 55.000 0.00 0.00 0.00 4.79
3726 5972 0.864455 GCGATGCTAATCTGCTGGAC 59.136 55.000 0.00 0.00 32.84 4.02
3727 5973 0.598419 CGCGATGCTAATCTGCTGGA 60.598 55.000 0.00 0.00 33.18 3.86
3728 5974 0.598419 TCGCGATGCTAATCTGCTGG 60.598 55.000 3.71 0.00 33.18 4.85
3729 5975 1.211743 TTCGCGATGCTAATCTGCTG 58.788 50.000 10.88 0.00 33.18 4.41
3730 5976 1.863454 CTTTCGCGATGCTAATCTGCT 59.137 47.619 10.88 0.00 33.18 4.24
3731 5977 1.594862 ACTTTCGCGATGCTAATCTGC 59.405 47.619 10.88 0.00 0.00 4.26
3732 5978 2.604914 ACACTTTCGCGATGCTAATCTG 59.395 45.455 10.88 2.29 0.00 2.90
3733 5979 2.860735 GACACTTTCGCGATGCTAATCT 59.139 45.455 10.88 0.00 0.00 2.40
3734 5980 2.603110 TGACACTTTCGCGATGCTAATC 59.397 45.455 10.88 4.71 0.00 1.75
3735 5981 2.616960 TGACACTTTCGCGATGCTAAT 58.383 42.857 10.88 0.00 0.00 1.73
3736 5982 2.073117 TGACACTTTCGCGATGCTAA 57.927 45.000 10.88 0.00 0.00 3.09
3737 5983 2.073117 TTGACACTTTCGCGATGCTA 57.927 45.000 10.88 0.00 0.00 3.49
3738 5984 1.195448 CTTTGACACTTTCGCGATGCT 59.805 47.619 10.88 0.00 0.00 3.79
3739 5985 1.595609 CTTTGACACTTTCGCGATGC 58.404 50.000 10.88 2.72 0.00 3.91
3740 5986 1.595609 GCTTTGACACTTTCGCGATG 58.404 50.000 10.88 8.37 0.00 3.84
3741 5987 0.517316 GGCTTTGACACTTTCGCGAT 59.483 50.000 10.88 0.00 0.00 4.58
3742 5988 0.531974 AGGCTTTGACACTTTCGCGA 60.532 50.000 3.71 3.71 0.00 5.87
3743 5989 0.307760 AAGGCTTTGACACTTTCGCG 59.692 50.000 0.00 0.00 0.00 5.87
3744 5990 2.385315 GAAAGGCTTTGACACTTTCGC 58.615 47.619 18.79 0.00 40.20 4.70
3745 5991 2.602217 CGGAAAGGCTTTGACACTTTCG 60.602 50.000 18.79 0.00 46.75 3.46
3746 5992 2.616842 TCGGAAAGGCTTTGACACTTTC 59.383 45.455 18.79 0.00 45.69 2.62
3747 5993 2.618709 CTCGGAAAGGCTTTGACACTTT 59.381 45.455 18.79 0.00 37.16 2.66
3748 5994 2.158813 TCTCGGAAAGGCTTTGACACTT 60.159 45.455 18.79 0.00 0.00 3.16
3749 5995 1.416401 TCTCGGAAAGGCTTTGACACT 59.584 47.619 18.79 0.00 0.00 3.55
3750 5996 1.878953 TCTCGGAAAGGCTTTGACAC 58.121 50.000 18.79 2.28 0.00 3.67
3751 5997 2.813754 CAATCTCGGAAAGGCTTTGACA 59.186 45.455 18.79 0.00 0.00 3.58
3752 5998 2.414691 GCAATCTCGGAAAGGCTTTGAC 60.415 50.000 18.79 9.11 0.00 3.18
3753 5999 1.812571 GCAATCTCGGAAAGGCTTTGA 59.187 47.619 18.79 8.72 0.00 2.69
3754 6000 1.815003 AGCAATCTCGGAAAGGCTTTG 59.185 47.619 18.79 3.93 0.00 2.77
3755 6001 2.206576 AGCAATCTCGGAAAGGCTTT 57.793 45.000 13.25 13.25 0.00 3.51
3756 6002 2.206576 AAGCAATCTCGGAAAGGCTT 57.793 45.000 0.00 0.00 36.82 4.35
3757 6003 3.135530 AGATAAGCAATCTCGGAAAGGCT 59.864 43.478 0.00 0.00 41.32 4.58
3758 6004 3.471680 AGATAAGCAATCTCGGAAAGGC 58.528 45.455 0.00 0.00 41.32 4.35
3759 6005 7.158021 AGAATAGATAAGCAATCTCGGAAAGG 58.842 38.462 4.97 0.00 44.17 3.11
3760 6006 8.600449 AAGAATAGATAAGCAATCTCGGAAAG 57.400 34.615 4.97 0.00 44.17 2.62
3761 6007 8.964476 AAAGAATAGATAAGCAATCTCGGAAA 57.036 30.769 4.97 0.00 44.17 3.13
3762 6008 8.964476 AAAAGAATAGATAAGCAATCTCGGAA 57.036 30.769 4.97 0.00 44.17 4.30
3763 6009 7.657761 GGAAAAGAATAGATAAGCAATCTCGGA 59.342 37.037 4.97 0.00 44.17 4.55
3764 6010 7.659390 AGGAAAAGAATAGATAAGCAATCTCGG 59.341 37.037 4.97 0.00 44.17 4.63
3765 6011 8.600449 AGGAAAAGAATAGATAAGCAATCTCG 57.400 34.615 4.97 0.00 44.17 4.04
3767 6013 9.500785 GCTAGGAAAAGAATAGATAAGCAATCT 57.499 33.333 6.79 6.79 46.95 2.40
3768 6014 9.500785 AGCTAGGAAAAGAATAGATAAGCAATC 57.499 33.333 0.00 0.00 34.52 2.67
3769 6015 9.859152 AAGCTAGGAAAAGAATAGATAAGCAAT 57.141 29.630 0.00 0.00 0.00 3.56
3770 6016 9.686683 AAAGCTAGGAAAAGAATAGATAAGCAA 57.313 29.630 0.00 0.00 0.00 3.91
3771 6017 9.331282 GAAAGCTAGGAAAAGAATAGATAAGCA 57.669 33.333 0.00 0.00 0.00 3.91
3772 6018 8.491950 CGAAAGCTAGGAAAAGAATAGATAAGC 58.508 37.037 0.00 0.00 0.00 3.09
3773 6019 9.535878 ACGAAAGCTAGGAAAAGAATAGATAAG 57.464 33.333 0.00 0.00 0.00 1.73
3774 6020 9.530633 GACGAAAGCTAGGAAAAGAATAGATAA 57.469 33.333 0.00 0.00 0.00 1.75
3775 6021 8.142551 GGACGAAAGCTAGGAAAAGAATAGATA 58.857 37.037 0.00 0.00 0.00 1.98
3776 6022 6.987404 GGACGAAAGCTAGGAAAAGAATAGAT 59.013 38.462 0.00 0.00 0.00 1.98
3777 6023 6.070995 TGGACGAAAGCTAGGAAAAGAATAGA 60.071 38.462 0.00 0.00 0.00 1.98
3778 6024 6.036191 GTGGACGAAAGCTAGGAAAAGAATAG 59.964 42.308 0.00 0.00 0.00 1.73
3779 6025 5.873164 GTGGACGAAAGCTAGGAAAAGAATA 59.127 40.000 0.00 0.00 0.00 1.75
3780 6026 4.695928 GTGGACGAAAGCTAGGAAAAGAAT 59.304 41.667 0.00 0.00 0.00 2.40
3781 6027 4.062991 GTGGACGAAAGCTAGGAAAAGAA 58.937 43.478 0.00 0.00 0.00 2.52
3782 6028 3.556423 GGTGGACGAAAGCTAGGAAAAGA 60.556 47.826 0.00 0.00 0.00 2.52
3783 6029 2.742589 GGTGGACGAAAGCTAGGAAAAG 59.257 50.000 0.00 0.00 0.00 2.27
3784 6030 2.105134 TGGTGGACGAAAGCTAGGAAAA 59.895 45.455 0.00 0.00 0.00 2.29
3785 6031 1.695242 TGGTGGACGAAAGCTAGGAAA 59.305 47.619 0.00 0.00 0.00 3.13
3786 6032 1.001633 GTGGTGGACGAAAGCTAGGAA 59.998 52.381 0.00 0.00 0.00 3.36
3787 6033 0.606604 GTGGTGGACGAAAGCTAGGA 59.393 55.000 0.00 0.00 0.00 2.94
3788 6034 0.608640 AGTGGTGGACGAAAGCTAGG 59.391 55.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.