>input_sequence_43161
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--------------------------------------------------------ATTTGTGAAAAGGTCGCCTGTCAC
GTAGCTAGCTAGCCAGCCAAGCCACGCCAGGCATTTGTTGTAGGCGAGAGTCGGTGAGTTGATGTGCTGCGGCGCCGAGG
TGGCGGACCCTGGAGAGCACCGGCGGCGGCTGGCCGCCGGCGACGACGACGGGGGAGACGGACGGGAGGAGCATGCACC-
--GTCCTCGCCGCCGCCCAACACGACGATGTGGCGGCGCAGGCAGGCGCAGGAGATGTCGGCCATGGTGTCGGCGCTAGC
TCAGGTCGTCGCCGGCGGCGTGGGCGAGGGTGGCATGGCGTCTTCGACCAAGAGACCCGCCGAGCACGAGGCCTTCGCGG
AGGAGGCGTGGTGGTCGACGTCGTACGGAGGCGGAGACGGAGACGGCGGAGCGCCGTCGGCGGCCTCTCCCTTCCTTGCC
GGTACGTAGTACGCTTTGACAACGACCATGCATCTCCATGCACAAGCATCGTGCAACACGCATAAAACGACACGTAACAA
-TAGTATTATT-------------------------AGCC-TTAAACAAGTTAAGGACAGTGCTAACGACTCGATCAATT
TTCTATGTGGGAGCTCAGCAACCCCATGTTATTAGTAGATAGCAAAACAACTAC--------------------------
---------------------------------GTACATCTTAGAGGGAGAGAG-AATCAAATTAAGATTTGTAAACTAC
TG--CTATCATGGATGATTGGGTAGATGTGCGTACGAGCATGCGTGCCGCGTCAGACACGTGTTCCTCGCCACCGACTAC
AGGGCAGAAGGAAGGAGAAGCAATAAGCATGTTGGTCTTCTTCTTCTTC---CATGTGCTCGATAT----GTCCAATTAA
AAAAGGGTTTGAAAT-TTAGGAGCCGCCAACAGTATGAAAGGAAATCCGCATTATCGTTTTCCCACTGTTCCATTCATAC
TA----CATTGGCAAACCTAGGCTGATTCGTGTTCAAAAATAAA-----AACTTAGGCTGATTCATTTCGGCATCATGGT
TTCGCATCTTCCAGCAAAACAGGGCAAGTGGGCAGGAAAGCAGAGCAACATACAGTAGAA--------------------
----------------------AAATACAGAAATTTCTTAGTGACTTGTCATGACATTCTTTCCCTTATCTCCTCTGTTT
ATTTGACTCGCGTGCAGATTACACGGCGGCGCCCGCGGCATCCTACTCGCCGCACGGTGCGGCAGCCGGCGACGAGGAGC
TTCCTTCGCCGTCCTCCGCCGAGTCCGGCGGCTCCGGGGGCGCGCCGAGGAAGCGGTACAGGGGCGTGCGGCAGCGGCCG
TGGGGGAAGTGGGCGGCGGAGATTCGTGACCCGCACAAGGCGGCGCGTGTGTGGCTCGGGACCTTCGACGACGCCGAGGC
CGCCGCGCGTGCCTACGACGCCGCCGCCCTCGGATTCCGCGGCAGCCGCGCCAAGCTCAACTTCCCCGAGTCGGCCACCA
TCCCGCCGCAGCAGCAGCCTCCTCCTGCG------------------------------------------CCGGCATTA
GCGATGCCACCGCCGCAGCGGCCCGAGGCGCTGCTGGAGTCGCAGGCTCTGTTGGGAGGGCAGGCCTATTCCCACTACGC
CAGGTTCCTGCTGCCGAGCACCGGCGGCTCGACGTCGGGGGCGCCGAGAACGCCGGCGCCTCCTCTGATTTACAGCTTCG
GAGCCGGAGCGAGCTACCCCTTGCAGCCGGAGAGCAGAGGTGAGGGTGCCGGTACAGAACGCCCGGGCCCGGGGGTGACC
TCAGCAGCGGCGTGGGCAGCCTACAGCCACGAGCAGCCTCAGCGGCGGGATGACCCGTCGGTGTGATCCCAACGCAACAT
TCGCTGACTGACAGTCAAAGCGAAGCCGAAGGATACTGACAAGGAAGGAAGAAAAAA-----------------------
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>chr5D_1_TraesCS5D01G129400
CCAACCTATATGTTTAAACTGTTGTTTTGACTCCTTTTATATATCTACAGAAGAGAAACGTAAAAATTCAGGGTCAACAG
AAAAAAGTACTACTATAAATGTATCTCACCTTTACTCTATTAAGTTCAATATAGAGGCCATTTGGATTTAGGCCTTGCCA
TGCCACACTTTCTCACATTTTTTTTC--CAAAGTTGTCTAAGGTTAGTTCCATAAAATGAAGGTCAAAAGTTGGCAAGCC
TAAAGAAATTTTTGCCACATTTTGTGTGTGTTTGTTATGTGGGTCCCTAATGCAGCAAAAAAATCTTACCTAAAATAACC
TTCCAAATTGGTCAAACTTGTCTAAGCTTTAGATGTGACAATCTAAGGCAACTATAGTCACAAAGCAAACAACCAATAGT
ATATGAACAACGGCAAACTAGTTTAACATGATCAAACACATTATTTATTGCAAGGTACTTTGGACACTATCTTCAACCTA
TCAAAAACTTGAATTAAAAAAAATCAAGGGGCTATCTTTAAGCTATGAAATACCCAAAAGTAATTCATATATATAG----
AGATTGTCCGTGAAGCAAACTTGTTCCGAGATGAAGCGAGGAAATTAAGTGATCCGTGTGTGTACACAGAAAAGCTGCCG
ACACAATAAGAAAAGAGACATGGCAGCACAAGTAGGAACAGAATTTGCACACGTCCATGAACACGCACATGCGCCAGGAC
AGATACATTGTCAGC---TAGTAGATCTAGATGAAACAAGCAATGCTGGTGATACAAATGCGTTGTATGTGGGACGATCG
CGGGTAG-ATTAGATCGATGTAGCTCACTGTTCCGATGGCGGAACTAAATCTATATCCACGATTACAACATCTAGCTAAT
TAAACGCACGCACGCCCGCACGCACGAAGTGAGCATATCTTGCTGCTTAAGCT------AGCCAAGCCAGCACGTACACC
TGAATCTCTTCCCATCTCTCTCTATATATAGTTGTCCGTCGCTGAGGAGTTGAAGCATTTGTGAAAAGGTCGCCTGTCAC
GTAGCTAGCTAGCCAGCCAAGCCACGCCAGGCATTTGTTGTAGGCGAGAGTCGGTGAGTTGATGTGCTGCGGCGCCGAGG
TGGCGGACCCTGGAGAGCACCGGCGGCGGCTGGCCGCCGGCGACGACGACGGGGGAGACGGACGGGAGGAGCATGCACC-
--GTCCTCGCCGCCGCCCAACACGACGATGTGGCGGCGCAGGCAGGCGCAGGAGATGTCGGCCATGGTGTCGGCGCTAGC
TCAGGTCGTCGCCGGCGGCGTGGGCGAGGGTGGCATGGCGTCTTCGACCAAGAGACCCGCCGAGCACGAGGCCTTCGCGG
AGGAGGCGTGGTGGTCGACGTCGTACGGAGGCGGAGACGGAGACGGCGGAGCGCCGTCGGCGGCCTCTCCCTTCCTTGCC
GGTACGTAGTACGCTTTGACAACGACCATGCATCTCCATGCACAAGCATCGTGCAACACGCATAAAACGACACGTAACAA
-TAGTATTATT-------------------------AGCC-TTAAACAAGTTAAGGACAGTGCTAACGACTCGATCAATT
TTCTATGTGGGAGCTCAGCAACCCCATGTTATTAGTAGATAGCAAAACAACTAC--------------------------
---------------------------------GTACATCTTAGAGGGAGAGAG-AATCAAATTAAGATTTGTAAACTAC
TG--CTATCATGGATGATTGGGTAGATGTGCGTACGAGCATGCGTGCCGCGTCAGACACGTGTTCCTCGCCACCGACTAC
AGGGCAGAAGGAAGGAGAAGCAATAAGCATGTTGGTCTTCTTCTTCTTC---CATGTGCTCGATAT----GTCCAATTAA
AAAAGGGTTTGAAAT-TTAGGAGCCGCCAACAGTATGAAAGGAAATCCGCATTATCGTTTTCCCACTGTTCCATTCATAC
TA----CATTGGCAAACCTAGGCTGATTCGTGTTCAAAAATAAA-----AACTTAGGCTGATTCATTTCGGCATCATGGT
TTCGCATCTTCCAGCAAAACAGGGCAAGTGGGCAGGAAAGCAGAGCAACATACAGTAGAA--------------------
----------------------AAATACAGAAATTTCTTAGTGACTTGTCATGACATTCTTTCCCTTATCTCCTCTGTTT
ATTTGACTCGCGTGCAGATTACACGGCGGCGCCCGCGGCATCCTACTCGCCGCACGGTGCGGCAGCCGGCGACGAGGAGC
TTCCTTCGCCGTCCTCCGCCGAGTCCGGCGGCTCCGGGGGCGCGCCGAGGAAGCGGTACAGGGGCGTGCGGCAGCGGCCG
TGGGGGAAGTGGGCGGCGGAGATTCGTGACCCGCACAAGGCGGCGCGTGTGTGGCTCGGGACCTTCGACGACGCCGAGGC
CGCCGCGCGTGCCTACGACGCCGCCGCCCTCGGATTCCGCGGCAGCCGCGCCAAGCTCAACTTCCCCGAGTCGGCCACCA
TCCCGCCGCAGCAGCAGCCTCCTCCTGCG------------------------------------------CCGGCATTA
GCGATGCCACCGCCGCAGCGGCCCGAGGCGCTGCTGGAGTCGCAGGCTCTGTTGGGAGGGCAGGCCTATTCCCACTACGC
CAGGTTCCTGCTGCCGAGCACCGGCGGCTCGACGTCGGGGGCGCCGAGAACGCCGGCGCCTCCTCTGATTTACAGCTTCG
GAGCCGGAGCGAGCTACCCCTTGCAGCCGGAGAGCAGAGGTGAGGGTGCCGGTACAGAACGCCCGGGCCCGGGGGTGACC
TCAGCAGCGGCGTGGGCAGCCTACAGCCACGAGCAGCCTCAGCGGCGGGATGACCCGTCGGTGTGATCCCAACGCAACAT
TCGCTGACTGACAGTCAAAGCGAAGCCGAAGGATACTGACAAGGAAGGAAG----AAAAAAGGGTGGACTCGTTTCTCAC
GTCGCGTGGTCAGCGTGTTCAGACGGACAGCAAATTGTTTGGTTTCTTGGTGGAATTGTTATTTCTGAAAAAACTTGTGA
CAAACTTCGTTCATTTATATTTT---------------------------------------------------------
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---------------------------------------------------ATTTAGATAATAGAAATCGATGCAATTTT
ATTTTC-------------TAGTAGAATGTAAACTCGAATTTGGTAAACCAAGCTTTCCGTGCCGCCGCAAGTTCTCCGT
CGGCAGAGACGTCTTTTGACTTCGTACGGATTGGCACCTGTCTAGCCATACAAACAAAAGATGTACACTGTCTCAGTTTT
ACGTGGAACTCAAG----------------------------------------TAGTATCATAAAATCAAATGCGTCAC
GTATATGACTACCACAAGAAGACAAGGCCCATTACAAAATTCTGGCATGTTTGGTTTTTCCT---TTTTTTTTTTGAAAA
ATTAACAGGTGG-GGAAGCTCCCCACCCGAATATATTTCTTAGTTAT--------------------------AAAGTTG
AATTCCATAAGCATGTGTAATCGTCATAAGAG-ATAGGAACGCCATGAGAAGGCGGCTTATTTTTGTTCCAGTTTCTTCA
CCCGTTGTCTCCAGAGCATCAGGTCTTCAATGATTCGCTTAAGGGTGAAGACACCGTGGTGGTTCTGTTGTCTGAAGGTC
ATAGCATTCTTTTTTTTCCAAGGGTACGCCAATAGCGTACCTTAGCTTTATAGAAGAGAGAATAATATATACAAGAGATT
ACATATGCGCTAGTTAGATGTCACATGTCGACCCTAACTAAGCCTCCACACCACTCCCTAGCTCTACTCGACTACTCTAA
TACTAATTGTCCTCCAAAAGCTCCCGCTCTGGCCCAGGTCCTCAGATCATCAAAGATCATGTACCACCGTATCCCACTCG
CTCTTGATCATGCCCGTGCCGAAGACTCTCGCGTTCCTTTGCTTCCATAGCGTCCAGCAGATTAGCATCGCGAAAGTGTC
AAAGCCTTTCCGAGATTGCTTATCTATTCTTTTCCTAGCTTTCGTCCACCACT
>chr5A_152
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GCCTTGCCA
TGCCACACTTTCTCACGCTTTTTTTTGTCAAAGTTGTCTAAAGTTAGTTCCATAAAATGAAAGTCACAAGTTGGCAAGCC
TTAAGAAAAATTTGTCACATTTTTTGCATGTATGCTATGTGGATCCCTAATGCGGCAGAAC-ATCTTACCTAAAATACTC
TTCTAAATTGGTTAAACTTGTCTAAGCTTT-------ACAATCTAAGGCAACTATAGTCACGAAGCAAACAACCAATAGT
ATATGAACAACAGCAAACTAGCTTAACATGATCAAACACATTATTTATCGCAAGGTACTTTGGACACTATCTTCAACCTA
TCAAAAACTTGAATTAAAAAAA-TCAAGGGGCTATCTTTAAGCTATGAAACACCAAAAAGTAATTCATATATATAG----
AGCTTGTCCCTGAAGCAAACTTGTACCGAGATGAAGCGAGTAAATTAAGTGATCCGTGTGTGTACACAGAAAAGCTGCCG
ACACAATAAGAAAAGAGACATGGCAGCACAAGTAGGAACAGAATTTGCACACGTCCATGAACACACACATGCGCCAGGCC
AGATACATTGTCACCTAGTAGTAGATCTAGATGAAACAAGCAATGCCGGTGATACAAATGCGTTGTATGTGGGTTCGTGG
GTAGATTAATTAGATCGATGTAGATCACTGTTCCGATGGCGGAACTAAATCTATATCCACGATTACAACATCTAGCTAAT
TAAACA----CACGCACGCACGCACGAAGTGGGCATATCTTACTGCTTAAGGTTTAGGCAGCCAAGCCAGCACGTACACC
TGAAACTTCCCCC-TCTCTCTATATATATAGTTGTCCGTCGCCGAGGAGTTGAAGCATTTGTGAAAAGGTCGCCTGTCAC
GTAGCTAGCTAGCCAGT--AGCCACGCCAGGCATTTGTTGTGGGCGAGAGTCGGTGAGTTGATGTGCTGCGGCGCCGAGG
TGGCGGACCCTGGAGAGCACCGGCGGCGACTGGCCGCCGGCGACGACGACGGGGGAGATGGACGGGAGGAGCATGCACTA
CTGTCCTCGCCGCCGCCCAATACGACGATGTGGCGGCGCAGACAGGCGCAGGACATGTCGGCCATGGTGTCGGCGCTAGC
TCATGTCGTCGCCGGCGGCGTGGGCGATGGTGGCATCGCGTCTTCGACCAAGAGACCCGCCGAGCACGAGGCCTTCGCGG
AGGAGGCGTGGTGGTCGACGTCGTACGGTGGTGGAGACGGAGACGGCGGAGCGCCGTCGGCGGCCTCTCCCTTCCTTGCC
GGTACGTGGTACGC-TTGACAACGACCATGCATCTCCATGCATAAGCATCGTGCAACACGCATAAAACGACACGTAACAA
-TAGTATTGTTAGCCTTAAACATGCTTTTTTAGGGAAGCC-TTAAACAAGTTAAGGACATTGCTAACGACTCGATCATTT
TTTTATTTGGGAGTTCATCAATCCCTAGTACTCTTTTCGTTTCAAATTACTCGTAAATTTAATTACTTGTTATGGTTTTA
GTTTAAATTTACGAGTAATTTAGAATGGATGGAGTACTTCTTAGAAGGAGAGAG-AATCAAATTAAGATTTGTAAACTAG
AGTACTATCATGAACGATTCGGTAGATGTGCGTACGAGCATGCGTGCCGCGTCAGACACGTGTTCCTCCCCACCTACAAC
AGGGCATGTTGG--------------------------TCTTCTTCTTC---CATGTGCTCGATAGATAAGTCCAATTAA
AAA-GGGTTTGAAATCTTAGGAGCCGCCAACAGTATGAAAGGAAATCGGCATTATCGTTTTCCCACTGTTCCATTCATAC
TACGTACATTGGCAAACCTAGGCTGATTCGTGTT---AAAAAAA-----AACTTTGGCTGATTCATTTCGGCATCATAGC
TTCGCGTCGTCCAGCGAAACAGAGCAAGTGGGCAGGAAAGTAGAGTAACATACAGTAGAA--------------------
----------------------AAATACAGAAATTTCTTAGTGACTTGTCATGACATTCTTTCCCTC-TCTCCTCTGTTT
ATTCGACTCGCGTGCAGATTACACAGCAGCGCCCGCCGCATCCTACTCGCCGCACGGGGTGGCAGCCGGCGACGAGGAGC
TTCCTTCGCCGTCCTCCGCCGAGTCTGGCGGCTCCGGGGGCACGCCGAGGAAGCGGTACAGGGGCGTGCGGCAGCGGCCG
TGGGGGAAGTGGGCGGCGGAGATCCGTGACCCGCACAAGGCGGCGCGTGTGTGGCTCGGGACCTTCGACAACGCCGAGGC
CGCCGCGCGCGCCTACGACGCCGCCGCCCTCGGATTCCGCGGCAGCCGCGCCAAGCTCAACTTTCCGGAGTCCGCCACCA
TCCCGCCACAGCAGCAGCCTCCCCCCGCT------------------------------------------CCGGCATTA
GCGATGCCACCGCCGCAGCGGCCCGAGGCGTTGCTGGAGTCGCAGGCTCTGTTGGGAGGGCAGGCCTATTCCCACTACGC
CAGGTTCCTGCTGCCGAGCACCGGCGGCTCGACGTCGGGGGCGCCGAGAACGCCGGCGCCTCCTGTGATGTACAGCTTCG
GAGCCGGAGCGAGCTACCCCATGCAGCCGGAGAGCAGAGGTGAGGGTGCCAGTACAGAACGCCCGGGCCCGGTGGTGACC
TCAGCAGCGGCGTGGGCAGCCTACAGCCATGAGCAGCCTGAGCGGCGGGATGACCCGTCGGTGTGATCCCAACGCAACAT
TCGCTGACTGACAGTCAAAGCGAAGCCGACGGATACTGACAAGGAAGGAAGGAAGAAAAAAGGGTGGACTCGTTTCTCAC
GTCGCGTGGTCAGCGTGTTCACACGGACAGCAAATTGTTTGGTTTCTTGGTGGAATTGGAATTTCTG-AAAAACTTGTGA
CAAACTTCGTTCATTTATATTGGAAAAAGCTCAGAATCAACCCGTGGATTTTCTCTCCCGCATCCGCCACCTCGCATAGG
ACGACACGTGTTTCAGTGGGTCCGTGCACCGCTTCACGTGCTACCTTATT------------------------------
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---------------------------ATCTCGTTTGATTGCTCAAGCCATATAAATTTTTTCTTGCCTTCTTCCTTTTT
TCCCCAAAGCCATT------------------------------------------------------------------
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--------CAGCCTTTTGCATCATACATGCAAGCAGAACAACGCCATCCCATGCCCACCGGCCTGTGAGTAGACATGTCC
ACGGAAGAGTCTGGCGGACACCACAACCCGGCCATGTCCTTCTCCAACCCAGTCATAGGTATTCATGGAGGTAGCATGCA
AGCAGCATCTAACGGCTGGTGGGCGTCCATGAAGGTAGCTTGCAGCAGCTAGCGGGTACAAACAGCAAGCACTGATGGAG
TATCATGCATGCTCGCTAGCCGACGCGACCGGCGACGGGGATTGACAGTTGGAGGTGGATGACCTTGTGGTTGGGGGCGA
CGACGGCGAACAACAGCGATGCTATCAGTGACGTCTATGTTTATGTAACTTCATTTTCATTGGGTTTTTTTTCGCAACAT
CATCTGTGTTGCAAAAGTTTTTTTCACAACAACACCCATGCTGCAGAAAAATGAAGGCGAAAAAATGTTCTGGAACACAT
CAATGTTGCAAAAGTCCGTTCCACAACAATATCCATGTTGCAGAAAATTGAAGCCGGAATTTTTTTTCTGCAAAGTCATT
CCG-----------------------------------------------------------------------------
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-------------------------------------------------------------------TGTTGCAAAAGTT
GATTCCACAACAAGATCAATGTTGCAGAAATGTGAAGACGAAAAAAATTCTGCAACAACACTAATGTTGCAGAAGAATTT
GTGCAACATGTGCTCTATTGCAAAGATGAGAAAGGGGTTGGACTGTTGGATAGTGTCAGATCTAATGGTTTTAGAGACGG
TGGATCTTTTTAAATTATCCGCCCGCGGACGCTTAGCCCCGCCTATATTTTATTTAGATAATAGAAACCGATGCA-----
-----------------------AGAGTGTAAACTCGAATTTGATAAACCAAGCTTTCCGTGCCGCCCCAAGTTCTCCGT
CGGCAGAGACGTCTTTTGACTTCGTACGGATTGGCACTTGTCTAGCCATACAAACACAAGATGCACATTGTCTCTGTTTT
ACGTGGAACTCAAA----------------------------------------TAGTTTCACAAAATCAAATGTGTCAC
GTGTATGACTACGACAAGAAGACAAGGTCCCTTACAAAATTCTGTCATGTTTGGTTTTTCTGTCCTTTCTTTTTTGAAAA
ATGAACAGGTGAAGGAAGCTCTTCACCTAAATATATTTCTCAACTTTGCAATCCATCATTTGATTG--ATTACAAAGATG
AATTATATAAGCACGTGTAATCGTGATAAGAGCTAGA-AACGTCATGAGGAGGCGACATGTTTTTGTTCCGGTTTCTTCA
TCCGGTGTGTCCAGAGCATCAGATCTTCAATGATTCGCTTAAGGATGCTGACACTGTGGTGGTTTTGTTGTCTGAAGGTC
GTAGTATTCTT---------------------------------------------------------------------
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>chr5B_421
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----------------------TTAACATGATCAAACACATTATTTATTGCAAGGTACTTTGGACACTAG-TTCAACCTA
TGAAAAAC-TGAAATAAAAAAA-TCAAGGGGCTATCTTTAAACTATGAGATACCAAAAGGTAATTCATATATATAGAGAG
AGATTGTCCCTGAAGCAAATTTGTTCCGAGATGAAGCGAGTAAATTAAGTGATCCGTGTGTGTACACACAAAAGCTGCCG
ACACAATAAGAAAAGAGACATGGCAGCACAAGTAGGAACAGAATTTGCACACGTCCATAAACACACACATGCGCCAG---
--ATACATTGTCACC---TAGTAGATCTAGATGAAACAAGCAATGTTGGTGATACAAATGCGTTGTATGTGGGATCGTGG
GTAGATC----AGATCGATGTAGATCACTGTTCCGATAGCGGAACTAAATCTATATCCACGATTACAACACCTAGCTAAT
TAAAC--------GCACGCACGCACGAAGTGAGCATATCTTGCTGCTTAAGCT------AGCCAAGCCAGCACGTACACC
TGAATTTCTTCCCATCCCCCTCTATATATAGTTGTCCGTCGCTGAGGAGTTGAAGCATTTGTGAAAAGGTCGCCTGTCAC
GTAGCTAGCTAGCCAGT--AGCCACGCCAGGCATTTGTTGTGGGCGAGAGTCGGTGAGTTGATGTGCTGCGGCGCCGAGG
TGGCGGACCCTGGAGAGCACCGGCGGCGGCTAGCCGCCGGCGACGACGACGGGGGAGATGGACGGGAGGAGCATGC---A
CTGTCCCCGCCGCCTCTCAATACGACGATGTGGGGGCGCAGACAGGCGCAGGAGATGTCGGCCATGGTATCGGCGCTAGC
TCAGGTCGTCGCCGGCGGCGTGGGCGAGGGTGTCATGGCGTCTTCGACCAAGAGACCCGCCGAGCACGAGGCCTTCGCGG
AGGAGGCGTGGTGGTCGACGTCGTACGGAGGTGGAGACGGAGACGGCGGAGCGCCGTCGGCGGCCTCTTCCTTCCTTGCC
GGTACGTAGTACGC-TTGACAACGACCATGCATCTCCATGCACAAGCATCGTGCAACACGCATAAAACGATACGTAATAC
TTAGTATCATT-------------------------AGACTTTAAACAAGTTA-----------AACGACTCGATCATTT
TTCTATTCGGGAGCTCAGCAACCCCATGTTAT---TAGATAGCAAAACAACTAC--------------------------
---------------------------------GTACATCTTAGAGGGAGAGAGAAATCAAATTAAGATTTGTAAACTAC
TG--CTATCATGGATGATTGGGTAGATGTGCGTGCGAGCATGCGTGCCGCGTCAGACACGTGTTCCTCGGCACCTACAAC
AGGGCACAAGGCAGGAGAAGCAATAAGCATGTTGGTCTTCTTCTTCTTCTTGCATGTGCTCGATAT----GTCCAATTAA
AAA-GGGTTTGAAATCTTAGGAGCCGCCAACAGTATGAAAGGAAATCCGCATCATCGTTTTCCCACTGTTCCATTCATAC
----TACATTGGCAAACCTAGGCTGATTCGTGTT---CAAAAAATAAAAAACTTAGGCTGATTCATTTCGGCATCATGGT
TTCGCATCTTCCAGCGAAACAGAGCAAGTGGGCAGGAAAGCAGAGCAACATAGAAAGAAAAATACAGTGGGTAGGACTCG
TTGTGTCCTTTCCTGGTCATGCAAATACAGAAATTTCTTAGT--CTTGTCATGGCATTCTTTCCCTTATCTCCTCTGTTT
ATTTGACTGGCGCGCAGATTACACGGCAGCGCCCGCGGCATCCTACTCGCCGCACGGGGCGGCAGCCGGCGACGAGGAGC
TTCCTTCGCCGTCCTCCGCCGAGTCTGGTGGCTCCGGGGGCACGCCGAGGAAGCGGTACAGGGGCGTGCGGCAGCGGCCG
TGGGGGAAGTGGGCGGCGGAGATCCGTGACCCGCACAAGGCGGCGCGTGTGTGGCTCGGGACCTTCGACGACGCCGAGGC
CGCCGCGCGTGCCTACGACGCCGCCGCCCTCGGATTCCGCGGCAGCCGCGCCAAGCTCAACTTCCCCGAGTCGGCCACCA
TCCCGCCGCCGCAGCAGCCTCCTCATGCACCGGCATTAGCGATGCCACCGCCGCAGCAGCCTCCTCATGCACCGGCATTA
GCGATGCCACCGCCGCAGCGGCCCGAGGCGCTGCTGGAGTCGCAGGCTCTGTTGGGAGGGCAGGCTTATTCCCACTACGC
CAGGTTCCTGCGGCCGAGCACCGGCGGCTCGACGTCGGGGGCGCCGAGAACGCCGGCGCCTCCTCTGATTTACAGCTTCG
GAGCCGGAGCGAGCTACCCCTTGCAGCCCGAGCGCAGAGGTGAGGGTGCCAGTACAGAACGCCCGGCCCCGGTGGTGACC
TCAGCAGCGGCGTGGGCAGCCTACAGCCACGAGCAGCCTCAGCGGCGGGATGACCCGTCGGTGTGATCCCAACGCAACAT
TCGCTC----ACAGTCAAAGCGAAGCCGACGGATACTGACAAGGAAGGG----AGAAAAAAGGGTGGACTCGTTTCTCAC
GTCCCGTGGTCAGCGTGTTCACACGGACAGCAAATTGTTTGGTTTCTTGGTGGAATTGGAATTTCTG-AAAAACTTGTGA
CAAACTTCGTTCATTTATATTTTGAGTCAATTACACCGGTGGTGCTTGAACTTGCCGCAAACGATCACTTTGGTGCTAGA
ACTTGTGGCATACATTGAACTGGTGCAAAAACTTGGCTCGGGCGTGCAAATACGGTGCAAATCATGTTTGGATACGAAAC
AATGCTGAGTTGGCATGCCAATGTGGCATCGGCCCTGCTGTCAATGACGGGAAGGCAGAGCGGAGTGCGTGTGGCCTTTT
TAATTTTGCAACAAGATGGATAAAAAATAATTTAGTGGTGTCACAAAATGGATAAATACACTTAATGTAGCGGAACAAAC
ATGCTTGTGGAGCTGAAATGGACTGTGATGAATGCGGATGCGGCCCATTTGCACCTGTTTTTTAGAACTTTTTAAAAGGT
ATGTAAATTATGATCTCAGTAATAAAAATAACGTTTAATTATTCATGTTGTATAAATACTATACACATAAACTAAATAAC
TTACGTTTCATAATTGTTCACGTATTATTTTAAAAATATTCATATATTTAAAATAATATTCATGAATTCCAATTTTTTTG
GATAATTAATAACAAATCAAGTATTTTAACATTACAATTCCAAAGTATTTTCTAATCATACAAACATGTCCATAATTATG
TGCACATTTTTATAGTTCAATGTTCGTAAAAATAAATATTCATAATTTAAATTTAAAAATTCATATGAATATTCATTCGT
GGGTAATGTTTAAATTATATAATATTTTTTAATATAAATCACGAGTGAAAATTATACCACATGAATGTTTGTACTCATAA
TTTTGTATAATTTAAATATAAGTTACAAGTGTATTTTTTGTATCAATTAAATATTTTACTTCATAAATATTTAAATGTCC
GTATTTACCAGACATTTTCATAATACATGT--------------------------------------------------
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--------------------------------GTGTATATTTAAATAATTTTATTTATTAATCATTAATATGCACATTAT
TTTTATTACTTATTTTTTACAAAAGTATTAAAAAGTCAGTGCGTGCAAAATGTGTCGCGCTATTTGCAGCTCATAGAAGT
CCCAGATGCGTTCTTCTTGTACTACATTAAGGACTGTTATTAGTGTTTCTCATTGCAACGTGAATGGTGGAATTGTTTGG
ACGGCTAGCTATACAGCAGTTGGTCTTAAGTTCGAGACGCGAAGGCGTTTGATCCGTTTTTATTTTCACGTATTGATAGA
CGGGGCCCATGTGTCATATAGTCAAAATGAAATGGCAGCTGCCGCGTTGTTAGGGGCTTTCTGTGAGAAATAAAAAAATT
TGAGGGTGTTTTCGCAAAAAAGGCCATAGACCTCCTCTACGCCTTCCCGTCACTGACAGTGGGCCCTATGCCACGCTGGC
GCGCCAAGTCGGCATCGATTTCGTAGCCAAGTGTGATTAGCACCGTATTTGCACGTCCGAGCCAAGTTGTTGCACCAGTT
CATTGTATGCCGCAAGTTCTAGCATCGAAGTGACCGTTTATGCCAAGTTTAAGCACCATCGGTGTAATTAACTCTTA---
--------------------------------------------------------------------------------
-------------------------------------------TATTTTATATTTAGATAATAGAAATCGATACACTTTC
ATTTTCTATTGTATGTACGTAGTAGAGTGTAAACTCGAATTTGGTAAACCAAGCTTTCCGTGCCGCCGCAAGTTCTCCGT
CGGCAGAGACGTCTTTTGACTTCGTACGGACTGGCACCTGTCTAGCCATACAAACACAAGATGCACACTCTCTCAGTTTT
ACGTGCAACTCAAAAGACCAAACAACGCAAGACGTGAGATCATCATCATAGGAATAGTTTCACAAAGTCAAATACGTCAC
GTATATGACTACGACAGGAAGACAAGGTCCCTTACAAAATTCTGGCATGAATGGGGT-----TCCTTTTCTTTTTGAAAA
ATGAACCCGGAGCTGGGACTCCCCACCTGAATATATTTCTCAATTTGATAATCCATCATGTCTGACTAATTACAAAGGTG
AATTACATAAGCACGTGTAATCGTGATAAGAGAATAGGAACGCCAT---GAGGTGGCCTGTTTTTGTTCTGGTTCCTTCA
TCCGATGTGTCTAGAGCATCAGGTCTTCAATGATTCGCTTAAGGGTGAAGACACTGTGGTGGTTCTGTGGTCTGAAGGCC
ACAAATTCTT----------------------------------------------------------------------
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-----------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----------------SS-------S---------------S-------------------S----S-------------
-S------SS----S--------S--SS---S--S-------S----------S---S--SS---------------SS-
---S--------S-----------------SSSSSSS------------------------S------------------
-----------S---------S----------------------------------------------------------
----------------------S-------------------------------S-------------------------
---------S------------------------------S---------------------------------------
----------------------------------------------------------------S-------------S-
-------------S------------------------------------------------------------SSS-S-
SSS-SSS----------------S--------------------------------------------------------
-----SSSSS-----S----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------SSS----------------------S--------------------------------------
----------------------------------------------------------S-------------------S-
--------------------S--------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------S-----------------------------------------------------------------
-----------------------------------------------------------S-----------------S--
------S-------------------------SSS---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S--S--
------S----S--------------------------------------------------------------------
---S----------------------------------------------------------------------------
----------------------------------SSS---S---------------------------------------
---------------S------S---------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------------------------S----------------------
-------------------------S---------------S--------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
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--------------------------------------------------S---------------------S-------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
---------------------S------------------------------------SS-------S------------
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---------------------------------------------------------------------------S---S
--------------------------S-----------------------------------------------------
--------------------------------------------------------S------S----------------
-------------S--------------------------------------------S---S-----------------
------------S--------------S--S-----------------------------SS------------------
--S------------------------S------------S-S--S-------------------------------S--
----S--------S----------S------------------------S-------S-S----------S---------
S---S---S---------------------------------------------S-------------------------
----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_601
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------TGTTCCGAGATGAAGCGAGG---------------------------------------
--------------------------------------------------------------------------------
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>reverse_1838
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------TAC
AGGGCAGAAGGAAGGAGA--------------------------------------------------------------
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>forward_896
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----------------------------------------------------------------------------TAAT
TAAACGCACGCACGCC----------------------------------------------------------------
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>reverse_2096
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---------------AAAACAGGGCAAGTGGGCA----------------------------------------------
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>forward_1082
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----------------------CACGCCAGGCATTTGTTGTA--------------------------------------
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>reverse_3062
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---------------------GACGGACAGCAAATTGTTTGGT-------------------------------------
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-----------------------------------------------------
