Multiple sequence alignment - TraesCS5D01G125800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G125800 chr5D 100.000 2489 0 0 1 2489 192948670 192946182 0.000000e+00 4597.0
1 TraesCS5D01G125800 chr5D 87.671 219 19 2 367 577 401002688 401002906 5.320000e-62 248.0
2 TraesCS5D01G125800 chr5D 90.909 55 4 1 2429 2482 285558678 285558732 3.430000e-09 73.1
3 TraesCS5D01G125800 chr5B 96.030 529 18 3 802 1329 198026663 198026137 0.000000e+00 857.0
4 TraesCS5D01G125800 chr5B 87.946 672 60 15 1755 2411 198015611 198014946 0.000000e+00 773.0
5 TraesCS5D01G125800 chr5B 90.323 279 22 4 1325 1598 198024957 198024679 6.540000e-96 361.0
6 TraesCS5D01G125800 chr5B 87.931 116 12 1 1647 1762 198024518 198024405 4.320000e-28 135.0
7 TraesCS5D01G125800 chr5B 97.143 70 1 1 707 775 198027828 198027759 1.560000e-22 117.0
8 TraesCS5D01G125800 chr5A 89.800 500 45 5 1936 2430 250572337 250572835 9.710000e-179 636.0
9 TraesCS5D01G125800 chr5A 92.670 191 7 2 591 777 250566777 250566964 4.080000e-68 268.0
10 TraesCS5D01G125800 chr5A 87.432 183 22 1 399 580 513401600 513401782 2.510000e-50 209.0
11 TraesCS5D01G125800 chr5A 96.667 60 2 0 2424 2483 250573752 250573811 1.580000e-17 100.0
12 TraesCS5D01G125800 chr5A 88.889 54 4 2 2429 2481 581098853 581098905 5.750000e-07 65.8
13 TraesCS5D01G125800 chr7D 83.813 278 34 7 321 588 112603532 112603256 1.140000e-63 254.0
14 TraesCS5D01G125800 chr2D 82.222 315 33 14 276 581 19223589 19223289 1.480000e-62 250.0
15 TraesCS5D01G125800 chr2B 86.937 222 20 3 367 580 778184476 778184256 8.900000e-60 241.0
16 TraesCS5D01G125800 chr2A 89.730 185 18 1 399 582 14974059 14973875 4.140000e-58 235.0
17 TraesCS5D01G125800 chr4D 85.586 222 22 4 368 580 455769287 455769507 8.960000e-55 224.0
18 TraesCS5D01G125800 chr7B 87.097 186 23 1 399 583 72560639 72560454 2.510000e-50 209.0
19 TraesCS5D01G125800 chr7B 86.667 60 6 2 2429 2487 638864566 638864508 5.750000e-07 65.8
20 TraesCS5D01G125800 chrUn 80.565 283 37 9 304 576 147935412 147935138 4.200000e-48 202.0
21 TraesCS5D01G125800 chr1D 90.566 53 4 1 2429 2481 211312466 211312415 4.440000e-08 69.4
22 TraesCS5D01G125800 chr4B 87.931 58 6 1 2433 2489 445010633 445010576 1.600000e-07 67.6
23 TraesCS5D01G125800 chr6D 87.500 56 4 3 2429 2483 81970536 81970483 7.430000e-06 62.1
24 TraesCS5D01G125800 chr3B 88.462 52 4 2 2429 2479 744731723 744731773 7.430000e-06 62.1
25 TraesCS5D01G125800 chr3B 88.462 52 4 2 2429 2479 746271442 746271492 7.430000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G125800 chr5D 192946182 192948670 2488 True 4597.0 4597 100.00000 1 2489 1 chr5D.!!$R1 2488
1 TraesCS5D01G125800 chr5B 198014946 198015611 665 True 773.0 773 87.94600 1755 2411 1 chr5B.!!$R1 656
2 TraesCS5D01G125800 chr5B 198024405 198027828 3423 True 367.5 857 92.85675 707 1762 4 chr5B.!!$R2 1055
3 TraesCS5D01G125800 chr5A 250572337 250573811 1474 False 368.0 636 93.23350 1936 2483 2 chr5A.!!$F4 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 438 0.034477 CGGGCCCTATTGGTCAGTTT 60.034 55.0 22.43 0.0 42.2 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 4220 0.178987 GGAGAGTATGAGGGCTCCGA 60.179 60.0 0.0 0.0 37.75 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.367340 CGCGCACGCACACATCAA 62.367 61.111 16.04 0.00 42.06 2.57
20 21 2.500369 GCGCACGCACACATCAAG 60.500 61.111 10.65 0.00 41.49 3.02
21 22 2.500369 CGCACGCACACATCAAGC 60.500 61.111 0.00 0.00 0.00 4.01
22 23 2.949106 GCACGCACACATCAAGCT 59.051 55.556 0.00 0.00 0.00 3.74
23 24 1.441515 GCACGCACACATCAAGCTG 60.442 57.895 0.00 0.00 0.00 4.24
24 25 1.944035 CACGCACACATCAAGCTGT 59.056 52.632 0.00 0.00 0.00 4.40
25 26 0.110509 CACGCACACATCAAGCTGTC 60.111 55.000 0.00 0.00 0.00 3.51
26 27 0.532640 ACGCACACATCAAGCTGTCA 60.533 50.000 0.00 0.00 0.00 3.58
27 28 0.110509 CGCACACATCAAGCTGTCAC 60.111 55.000 0.00 0.00 0.00 3.67
28 29 0.110509 GCACACATCAAGCTGTCACG 60.111 55.000 0.00 0.00 0.00 4.35
29 30 0.514255 CACACATCAAGCTGTCACGG 59.486 55.000 0.00 0.00 0.00 4.94
30 31 0.106708 ACACATCAAGCTGTCACGGT 59.893 50.000 0.00 0.00 0.00 4.83
31 32 0.792640 CACATCAAGCTGTCACGGTC 59.207 55.000 0.00 0.00 0.00 4.79
32 33 0.667487 ACATCAAGCTGTCACGGTCG 60.667 55.000 0.00 0.00 0.00 4.79
33 34 0.667487 CATCAAGCTGTCACGGTCGT 60.667 55.000 0.00 0.00 0.00 4.34
34 35 0.388649 ATCAAGCTGTCACGGTCGTC 60.389 55.000 0.00 0.00 0.00 4.20
35 36 2.050351 AAGCTGTCACGGTCGTCG 60.050 61.111 0.00 0.00 45.88 5.12
36 37 2.549198 AAGCTGTCACGGTCGTCGA 61.549 57.895 7.78 0.00 42.43 4.20
37 38 2.728427 AAGCTGTCACGGTCGTCGAC 62.728 60.000 17.16 17.16 42.43 4.20
38 39 2.635338 CTGTCACGGTCGTCGACA 59.365 61.111 25.64 19.24 42.43 4.35
39 40 1.209383 CTGTCACGGTCGTCGACAT 59.791 57.895 25.64 11.30 42.43 3.06
40 41 0.793478 CTGTCACGGTCGTCGACATC 60.793 60.000 25.64 9.40 42.43 3.06
41 42 1.513586 GTCACGGTCGTCGACATCC 60.514 63.158 25.64 15.21 42.43 3.51
42 43 2.202570 CACGGTCGTCGACATCCC 60.203 66.667 25.64 10.48 42.43 3.85
43 44 3.807538 ACGGTCGTCGACATCCCG 61.808 66.667 26.48 26.48 44.06 5.14
45 46 4.867599 GGTCGTCGACATCCCGCC 62.868 72.222 25.64 3.89 33.68 6.13
116 117 4.020617 CGCACCTCCTCCTGCCAA 62.021 66.667 0.00 0.00 0.00 4.52
117 118 2.045536 GCACCTCCTCCTGCCAAG 60.046 66.667 0.00 0.00 0.00 3.61
118 119 2.045536 CACCTCCTCCTGCCAAGC 60.046 66.667 0.00 0.00 0.00 4.01
119 120 2.530151 ACCTCCTCCTGCCAAGCA 60.530 61.111 0.00 0.00 36.92 3.91
120 121 2.156098 ACCTCCTCCTGCCAAGCAA 61.156 57.895 0.00 0.00 38.41 3.91
121 122 1.676967 CCTCCTCCTGCCAAGCAAC 60.677 63.158 0.00 0.00 38.41 4.17
122 123 1.377994 CTCCTCCTGCCAAGCAACT 59.622 57.895 0.00 0.00 38.41 3.16
123 124 0.615331 CTCCTCCTGCCAAGCAACTA 59.385 55.000 0.00 0.00 38.41 2.24
124 125 1.211457 CTCCTCCTGCCAAGCAACTAT 59.789 52.381 0.00 0.00 38.41 2.12
125 126 1.065199 TCCTCCTGCCAAGCAACTATG 60.065 52.381 0.00 0.00 38.41 2.23
126 127 1.386533 CTCCTGCCAAGCAACTATGG 58.613 55.000 0.00 0.00 38.41 2.74
130 131 4.319133 CCAAGCAACTATGGCGGT 57.681 55.556 0.00 0.00 36.08 5.68
131 132 1.802636 CCAAGCAACTATGGCGGTG 59.197 57.895 0.00 0.00 36.08 4.94
132 133 1.137404 CAAGCAACTATGGCGGTGC 59.863 57.895 0.00 0.00 36.08 5.01
133 134 1.303236 AAGCAACTATGGCGGTGCA 60.303 52.632 3.51 0.00 36.08 4.57
134 135 0.680921 AAGCAACTATGGCGGTGCAT 60.681 50.000 3.51 0.00 36.08 3.96
135 136 1.097547 AGCAACTATGGCGGTGCATC 61.098 55.000 3.51 0.00 36.08 3.91
136 137 2.024918 CAACTATGGCGGTGCATCC 58.975 57.895 0.00 0.00 0.00 3.51
137 138 1.152963 AACTATGGCGGTGCATCCC 60.153 57.895 0.00 0.00 0.00 3.85
160 161 3.816697 CGCGCATACGAGCTCTAC 58.183 61.111 12.85 0.00 43.93 2.59
161 162 2.069838 CGCGCATACGAGCTCTACG 61.070 63.158 12.85 9.00 43.93 3.51
162 163 1.726322 GCGCATACGAGCTCTACGG 60.726 63.158 12.85 0.00 43.93 4.02
163 164 1.726322 CGCATACGAGCTCTACGGC 60.726 63.158 12.85 9.45 43.93 5.68
164 165 1.726322 GCATACGAGCTCTACGGCG 60.726 63.158 12.85 4.80 37.29 6.46
165 166 1.726322 CATACGAGCTCTACGGCGC 60.726 63.158 12.85 0.00 37.29 6.53
166 167 2.184830 ATACGAGCTCTACGGCGCA 61.185 57.895 10.83 0.00 37.29 6.09
167 168 2.389866 ATACGAGCTCTACGGCGCAC 62.390 60.000 10.83 0.00 37.29 5.34
168 169 4.476410 CGAGCTCTACGGCGCACA 62.476 66.667 10.83 0.00 37.29 4.57
169 170 2.881352 GAGCTCTACGGCGCACAC 60.881 66.667 10.83 0.00 37.29 3.82
170 171 4.778415 AGCTCTACGGCGCACACG 62.778 66.667 10.83 6.32 44.07 4.49
193 194 4.459089 GCTCCAGGGAGTGACGGC 62.459 72.222 16.31 0.00 43.70 5.68
194 195 2.997315 CTCCAGGGAGTGACGGCA 60.997 66.667 7.19 0.00 37.47 5.69
195 196 2.284625 TCCAGGGAGTGACGGCAT 60.285 61.111 0.00 0.00 0.00 4.40
196 197 2.124983 CCAGGGAGTGACGGCATG 60.125 66.667 0.00 0.00 0.00 4.06
197 198 2.124983 CAGGGAGTGACGGCATGG 60.125 66.667 0.00 0.00 0.00 3.66
198 199 2.607750 AGGGAGTGACGGCATGGT 60.608 61.111 0.00 0.00 0.00 3.55
199 200 2.436646 GGGAGTGACGGCATGGTG 60.437 66.667 0.00 0.00 0.00 4.17
200 201 2.436646 GGAGTGACGGCATGGTGG 60.437 66.667 0.00 0.00 0.00 4.61
201 202 2.662596 GAGTGACGGCATGGTGGA 59.337 61.111 0.00 0.00 0.00 4.02
202 203 1.003839 GAGTGACGGCATGGTGGAA 60.004 57.895 0.00 0.00 0.00 3.53
203 204 0.392998 GAGTGACGGCATGGTGGAAT 60.393 55.000 0.00 0.00 0.00 3.01
204 205 0.392998 AGTGACGGCATGGTGGAATC 60.393 55.000 0.00 0.00 0.00 2.52
205 206 1.077787 TGACGGCATGGTGGAATCC 60.078 57.895 0.00 0.00 0.00 3.01
206 207 1.823899 GACGGCATGGTGGAATCCC 60.824 63.158 0.00 0.00 0.00 3.85
207 208 2.275089 CGGCATGGTGGAATCCCA 59.725 61.111 0.00 0.00 40.95 4.37
208 209 1.152694 CGGCATGGTGGAATCCCAT 60.153 57.895 0.00 0.00 45.68 4.00
211 212 4.585070 ATGGTGGAATCCCATGCG 57.415 55.556 0.00 0.00 45.68 4.73
212 213 1.152694 ATGGTGGAATCCCATGCGG 60.153 57.895 0.00 0.00 45.68 5.69
213 214 1.936767 ATGGTGGAATCCCATGCGGT 61.937 55.000 0.00 0.00 45.68 5.68
214 215 1.823899 GGTGGAATCCCATGCGGTC 60.824 63.158 0.00 0.00 45.68 4.79
215 216 1.823899 GTGGAATCCCATGCGGTCC 60.824 63.158 0.00 0.00 45.68 4.46
216 217 2.591715 GGAATCCCATGCGGTCCG 60.592 66.667 6.99 6.99 0.00 4.79
217 218 2.189521 GAATCCCATGCGGTCCGT 59.810 61.111 13.94 0.00 0.00 4.69
218 219 2.124736 AATCCCATGCGGTCCGTG 60.125 61.111 13.94 3.86 0.00 4.94
219 220 2.587322 GAATCCCATGCGGTCCGTGA 62.587 60.000 13.94 0.00 31.89 4.35
220 221 2.593468 AATCCCATGCGGTCCGTGAG 62.593 60.000 13.94 2.60 31.89 3.51
222 223 4.758251 CCATGCGGTCCGTGAGCA 62.758 66.667 13.94 1.98 45.46 4.26
225 226 4.794439 TGCGGTCCGTGAGCATCG 62.794 66.667 13.94 0.00 38.61 3.84
226 227 4.492160 GCGGTCCGTGAGCATCGA 62.492 66.667 13.94 0.00 38.61 3.59
227 228 2.579787 CGGTCCGTGAGCATCGAC 60.580 66.667 2.08 0.00 38.61 4.20
228 229 2.579787 GGTCCGTGAGCATCGACG 60.580 66.667 0.00 0.00 38.61 5.12
231 232 2.880879 CCGTGAGCATCGACGGTG 60.881 66.667 3.04 3.04 46.91 4.94
232 233 2.880879 CGTGAGCATCGACGGTGG 60.881 66.667 10.65 0.00 38.61 4.61
233 234 3.188786 GTGAGCATCGACGGTGGC 61.189 66.667 10.65 4.26 38.61 5.01
234 235 4.794439 TGAGCATCGACGGTGGCG 62.794 66.667 10.65 0.00 38.61 5.69
259 260 2.876645 CGACGAGCAGCCGAAGTC 60.877 66.667 9.87 4.14 0.00 3.01
260 261 2.569134 GACGAGCAGCCGAAGTCT 59.431 61.111 9.87 0.00 0.00 3.24
261 262 1.080434 GACGAGCAGCCGAAGTCTT 60.080 57.895 9.87 0.00 0.00 3.01
262 263 1.073768 GACGAGCAGCCGAAGTCTTC 61.074 60.000 9.87 2.18 0.00 2.87
287 288 2.597510 GCCCGCAACCTCCTTGTT 60.598 61.111 0.00 0.00 31.73 2.83
288 289 2.919494 GCCCGCAACCTCCTTGTTG 61.919 63.158 0.00 0.00 46.59 3.33
289 290 1.228124 CCCGCAACCTCCTTGTTGA 60.228 57.895 8.01 0.00 46.77 3.18
290 291 0.821711 CCCGCAACCTCCTTGTTGAA 60.822 55.000 8.01 0.00 46.77 2.69
291 292 1.028905 CCGCAACCTCCTTGTTGAAA 58.971 50.000 8.01 0.00 46.77 2.69
292 293 1.613437 CCGCAACCTCCTTGTTGAAAT 59.387 47.619 8.01 0.00 46.77 2.17
293 294 2.607771 CCGCAACCTCCTTGTTGAAATG 60.608 50.000 8.01 0.00 46.77 2.32
294 295 2.407090 GCAACCTCCTTGTTGAAATGC 58.593 47.619 8.01 0.00 46.77 3.56
295 296 2.867647 GCAACCTCCTTGTTGAAATGCC 60.868 50.000 8.01 0.00 46.77 4.40
296 297 2.364970 CAACCTCCTTGTTGAAATGCCA 59.635 45.455 0.00 0.00 46.77 4.92
297 298 2.676748 ACCTCCTTGTTGAAATGCCAA 58.323 42.857 0.00 0.00 0.00 4.52
298 299 3.242011 ACCTCCTTGTTGAAATGCCAAT 58.758 40.909 0.00 0.00 0.00 3.16
299 300 3.007182 ACCTCCTTGTTGAAATGCCAATG 59.993 43.478 0.00 0.00 0.00 2.82
300 301 3.592059 CTCCTTGTTGAAATGCCAATGG 58.408 45.455 0.00 0.00 0.00 3.16
301 302 2.302445 TCCTTGTTGAAATGCCAATGGG 59.698 45.455 0.00 0.00 37.18 4.00
302 303 2.302445 CCTTGTTGAAATGCCAATGGGA 59.698 45.455 0.00 0.00 35.59 4.37
303 304 3.592059 CTTGTTGAAATGCCAATGGGAG 58.408 45.455 0.00 0.00 35.59 4.30
304 305 2.886913 TGTTGAAATGCCAATGGGAGA 58.113 42.857 0.00 0.00 35.59 3.71
305 306 3.237746 TGTTGAAATGCCAATGGGAGAA 58.762 40.909 0.00 0.00 35.59 2.87
306 307 3.645212 TGTTGAAATGCCAATGGGAGAAA 59.355 39.130 0.00 0.00 35.59 2.52
307 308 4.102210 TGTTGAAATGCCAATGGGAGAAAA 59.898 37.500 0.00 0.00 35.59 2.29
308 309 4.540359 TGAAATGCCAATGGGAGAAAAG 57.460 40.909 0.00 0.00 35.59 2.27
309 310 4.158786 TGAAATGCCAATGGGAGAAAAGA 58.841 39.130 0.00 0.00 35.59 2.52
310 311 4.221262 TGAAATGCCAATGGGAGAAAAGAG 59.779 41.667 0.00 0.00 35.59 2.85
311 312 2.220653 TGCCAATGGGAGAAAAGAGG 57.779 50.000 0.00 0.00 35.59 3.69
312 313 1.710244 TGCCAATGGGAGAAAAGAGGA 59.290 47.619 0.00 0.00 35.59 3.71
313 314 2.109834 TGCCAATGGGAGAAAAGAGGAA 59.890 45.455 0.00 0.00 35.59 3.36
314 315 2.757314 GCCAATGGGAGAAAAGAGGAAG 59.243 50.000 0.00 0.00 35.59 3.46
315 316 3.562176 GCCAATGGGAGAAAAGAGGAAGA 60.562 47.826 0.00 0.00 35.59 2.87
316 317 4.666512 CCAATGGGAGAAAAGAGGAAGAA 58.333 43.478 0.00 0.00 35.59 2.52
317 318 5.079643 CCAATGGGAGAAAAGAGGAAGAAA 58.920 41.667 0.00 0.00 35.59 2.52
318 319 5.718607 CCAATGGGAGAAAAGAGGAAGAAAT 59.281 40.000 0.00 0.00 35.59 2.17
319 320 6.891908 CCAATGGGAGAAAAGAGGAAGAAATA 59.108 38.462 0.00 0.00 35.59 1.40
320 321 7.397192 CCAATGGGAGAAAAGAGGAAGAAATAA 59.603 37.037 0.00 0.00 35.59 1.40
321 322 8.806146 CAATGGGAGAAAAGAGGAAGAAATAAA 58.194 33.333 0.00 0.00 0.00 1.40
322 323 8.956446 ATGGGAGAAAAGAGGAAGAAATAAAA 57.044 30.769 0.00 0.00 0.00 1.52
323 324 8.776061 TGGGAGAAAAGAGGAAGAAATAAAAA 57.224 30.769 0.00 0.00 0.00 1.94
324 325 8.860088 TGGGAGAAAAGAGGAAGAAATAAAAAG 58.140 33.333 0.00 0.00 0.00 2.27
325 326 9.078990 GGGAGAAAAGAGGAAGAAATAAAAAGA 57.921 33.333 0.00 0.00 0.00 2.52
365 366 7.581011 AAAAACACTTGAGTCATTGACAAAC 57.419 32.000 18.57 9.89 34.60 2.93
366 367 4.536364 ACACTTGAGTCATTGACAAACG 57.464 40.909 18.57 6.63 34.60 3.60
367 368 3.312421 ACACTTGAGTCATTGACAAACGG 59.688 43.478 18.57 7.26 34.60 4.44
368 369 2.878406 ACTTGAGTCATTGACAAACGGG 59.122 45.455 18.57 6.34 34.60 5.28
369 370 2.920724 TGAGTCATTGACAAACGGGA 57.079 45.000 18.57 0.00 34.60 5.14
370 371 2.489971 TGAGTCATTGACAAACGGGAC 58.510 47.619 18.57 0.00 34.60 4.46
371 372 2.158885 TGAGTCATTGACAAACGGGACA 60.159 45.455 18.57 3.57 34.60 4.02
372 373 2.218603 AGTCATTGACAAACGGGACAC 58.781 47.619 18.57 0.00 34.60 3.67
373 374 2.158813 AGTCATTGACAAACGGGACACT 60.159 45.455 18.57 0.00 34.60 3.55
374 375 2.223377 GTCATTGACAAACGGGACACTC 59.777 50.000 11.93 0.00 32.09 3.51
375 376 2.104111 TCATTGACAAACGGGACACTCT 59.896 45.455 0.00 0.00 0.00 3.24
376 377 2.702592 TTGACAAACGGGACACTCTT 57.297 45.000 0.00 0.00 0.00 2.85
377 378 2.234300 TGACAAACGGGACACTCTTC 57.766 50.000 0.00 0.00 0.00 2.87
378 379 1.202604 TGACAAACGGGACACTCTTCC 60.203 52.381 0.00 0.00 34.52 3.46
379 380 0.834612 ACAAACGGGACACTCTTCCA 59.165 50.000 0.00 0.00 37.40 3.53
380 381 1.210967 ACAAACGGGACACTCTTCCAA 59.789 47.619 0.00 0.00 37.40 3.53
381 382 1.602377 CAAACGGGACACTCTTCCAAC 59.398 52.381 0.00 0.00 37.40 3.77
382 383 1.129058 AACGGGACACTCTTCCAACT 58.871 50.000 0.00 0.00 37.40 3.16
383 384 0.680061 ACGGGACACTCTTCCAACTC 59.320 55.000 0.00 0.00 37.40 3.01
384 385 0.679505 CGGGACACTCTTCCAACTCA 59.320 55.000 0.00 0.00 37.40 3.41
385 386 1.337260 CGGGACACTCTTCCAACTCAG 60.337 57.143 0.00 0.00 37.40 3.35
386 387 1.609320 GGGACACTCTTCCAACTCAGC 60.609 57.143 0.00 0.00 37.40 4.26
387 388 1.070758 GGACACTCTTCCAACTCAGCA 59.929 52.381 0.00 0.00 35.49 4.41
388 389 2.289945 GGACACTCTTCCAACTCAGCAT 60.290 50.000 0.00 0.00 35.49 3.79
389 390 3.055819 GGACACTCTTCCAACTCAGCATA 60.056 47.826 0.00 0.00 35.49 3.14
390 391 4.383552 GGACACTCTTCCAACTCAGCATAT 60.384 45.833 0.00 0.00 35.49 1.78
391 392 5.171339 ACACTCTTCCAACTCAGCATATT 57.829 39.130 0.00 0.00 0.00 1.28
392 393 4.940046 ACACTCTTCCAACTCAGCATATTG 59.060 41.667 0.00 0.00 0.00 1.90
393 394 4.940046 CACTCTTCCAACTCAGCATATTGT 59.060 41.667 0.00 0.00 0.00 2.71
394 395 5.064452 CACTCTTCCAACTCAGCATATTGTC 59.936 44.000 0.00 0.00 0.00 3.18
395 396 4.183865 TCTTCCAACTCAGCATATTGTCG 58.816 43.478 0.00 0.00 0.00 4.35
396 397 2.279741 TCCAACTCAGCATATTGTCGC 58.720 47.619 0.00 0.00 0.00 5.19
397 398 2.009051 CCAACTCAGCATATTGTCGCA 58.991 47.619 0.00 0.00 0.00 5.10
398 399 2.223112 CCAACTCAGCATATTGTCGCAC 60.223 50.000 0.00 0.00 0.00 5.34
399 400 1.280982 ACTCAGCATATTGTCGCACG 58.719 50.000 0.00 0.00 0.00 5.34
400 401 0.042708 CTCAGCATATTGTCGCACGC 60.043 55.000 0.00 0.00 0.00 5.34
401 402 1.010797 CAGCATATTGTCGCACGCC 60.011 57.895 0.00 0.00 0.00 5.68
402 403 1.449423 AGCATATTGTCGCACGCCA 60.449 52.632 0.00 0.00 0.00 5.69
403 404 1.024046 AGCATATTGTCGCACGCCAA 61.024 50.000 0.00 0.00 0.00 4.52
404 405 0.179176 GCATATTGTCGCACGCCAAA 60.179 50.000 0.00 0.00 0.00 3.28
405 406 1.533756 GCATATTGTCGCACGCCAAAT 60.534 47.619 0.00 0.00 0.00 2.32
406 407 2.375110 CATATTGTCGCACGCCAAATC 58.625 47.619 0.00 0.00 0.00 2.17
407 408 1.443802 TATTGTCGCACGCCAAATCA 58.556 45.000 0.00 0.00 0.00 2.57
408 409 0.168788 ATTGTCGCACGCCAAATCAG 59.831 50.000 0.00 0.00 0.00 2.90
409 410 2.202349 GTCGCACGCCAAATCAGC 60.202 61.111 0.00 0.00 0.00 4.26
410 411 3.430862 TCGCACGCCAAATCAGCC 61.431 61.111 0.00 0.00 0.00 4.85
411 412 3.434319 CGCACGCCAAATCAGCCT 61.434 61.111 0.00 0.00 0.00 4.58
412 413 2.180017 GCACGCCAAATCAGCCTG 59.820 61.111 0.00 0.00 0.00 4.85
413 414 2.334946 GCACGCCAAATCAGCCTGA 61.335 57.895 0.00 0.00 0.00 3.86
414 415 1.503542 CACGCCAAATCAGCCTGAC 59.496 57.895 0.00 0.00 0.00 3.51
415 416 1.073025 ACGCCAAATCAGCCTGACA 59.927 52.632 0.00 0.00 0.00 3.58
416 417 0.957395 ACGCCAAATCAGCCTGACAG 60.957 55.000 0.00 0.00 0.00 3.51
417 418 1.651240 CGCCAAATCAGCCTGACAGG 61.651 60.000 17.83 17.83 38.80 4.00
427 428 3.164269 CTGACAGGCGGGCCCTAT 61.164 66.667 22.43 1.56 44.09 2.57
428 429 2.690881 TGACAGGCGGGCCCTATT 60.691 61.111 22.43 0.78 44.09 1.73
429 430 2.203209 GACAGGCGGGCCCTATTG 60.203 66.667 22.43 16.84 44.09 1.90
430 431 3.774599 GACAGGCGGGCCCTATTGG 62.775 68.421 22.43 4.41 44.09 3.16
431 432 3.809013 CAGGCGGGCCCTATTGGT 61.809 66.667 22.43 0.00 44.09 3.67
432 433 3.489513 AGGCGGGCCCTATTGGTC 61.490 66.667 22.43 4.90 44.08 4.02
433 434 3.804329 GGCGGGCCCTATTGGTCA 61.804 66.667 22.43 0.00 42.20 4.02
434 435 2.203209 GCGGGCCCTATTGGTCAG 60.203 66.667 22.43 0.92 42.20 3.51
435 436 3.043999 GCGGGCCCTATTGGTCAGT 62.044 63.158 22.43 0.00 42.20 3.41
436 437 1.607612 CGGGCCCTATTGGTCAGTT 59.392 57.895 22.43 0.00 42.20 3.16
437 438 0.034477 CGGGCCCTATTGGTCAGTTT 60.034 55.000 22.43 0.00 42.20 2.66
438 439 1.763968 GGGCCCTATTGGTCAGTTTC 58.236 55.000 17.04 0.00 42.20 2.78
439 440 1.379527 GGCCCTATTGGTCAGTTTCG 58.620 55.000 0.00 0.00 39.18 3.46
440 441 0.733150 GCCCTATTGGTCAGTTTCGC 59.267 55.000 0.00 0.00 36.04 4.70
441 442 1.679032 GCCCTATTGGTCAGTTTCGCT 60.679 52.381 0.00 0.00 36.04 4.93
442 443 2.009774 CCCTATTGGTCAGTTTCGCTG 58.990 52.381 0.00 0.00 46.34 5.18
443 444 2.615493 CCCTATTGGTCAGTTTCGCTGT 60.615 50.000 0.00 0.00 45.23 4.40
444 445 3.074412 CCTATTGGTCAGTTTCGCTGTT 58.926 45.455 0.00 0.00 45.23 3.16
445 446 3.502211 CCTATTGGTCAGTTTCGCTGTTT 59.498 43.478 0.00 0.00 45.23 2.83
446 447 4.023193 CCTATTGGTCAGTTTCGCTGTTTT 60.023 41.667 0.00 0.00 45.23 2.43
447 448 3.414549 TTGGTCAGTTTCGCTGTTTTC 57.585 42.857 0.00 0.00 45.23 2.29
448 449 2.639065 TGGTCAGTTTCGCTGTTTTCT 58.361 42.857 0.00 0.00 45.23 2.52
449 450 2.612212 TGGTCAGTTTCGCTGTTTTCTC 59.388 45.455 0.00 0.00 45.23 2.87
450 451 2.348591 GGTCAGTTTCGCTGTTTTCTCG 60.349 50.000 0.00 0.00 45.23 4.04
451 452 2.538449 GTCAGTTTCGCTGTTTTCTCGA 59.462 45.455 0.00 0.00 45.23 4.04
452 453 2.538449 TCAGTTTCGCTGTTTTCTCGAC 59.462 45.455 0.00 0.00 45.23 4.20
453 454 1.865340 AGTTTCGCTGTTTTCTCGACC 59.135 47.619 0.00 0.00 31.48 4.79
454 455 1.595794 GTTTCGCTGTTTTCTCGACCA 59.404 47.619 0.00 0.00 31.48 4.02
455 456 1.942677 TTCGCTGTTTTCTCGACCAA 58.057 45.000 0.00 0.00 31.48 3.67
456 457 1.942677 TCGCTGTTTTCTCGACCAAA 58.057 45.000 0.00 0.00 0.00 3.28
457 458 2.489971 TCGCTGTTTTCTCGACCAAAT 58.510 42.857 0.00 0.00 0.00 2.32
458 459 2.478894 TCGCTGTTTTCTCGACCAAATC 59.521 45.455 0.00 0.00 0.00 2.17
459 460 2.412847 CGCTGTTTTCTCGACCAAATCC 60.413 50.000 0.00 0.00 0.00 3.01
460 461 2.412847 GCTGTTTTCTCGACCAAATCCG 60.413 50.000 0.00 0.00 0.00 4.18
461 462 3.064207 CTGTTTTCTCGACCAAATCCGA 58.936 45.455 0.00 0.00 0.00 4.55
464 465 4.910956 CTCGACCAAATCCGAGCA 57.089 55.556 0.00 0.00 44.35 4.26
465 466 3.369381 CTCGACCAAATCCGAGCAT 57.631 52.632 0.00 0.00 44.35 3.79
466 467 1.212616 CTCGACCAAATCCGAGCATC 58.787 55.000 0.00 0.00 44.35 3.91
467 468 0.534873 TCGACCAAATCCGAGCATCA 59.465 50.000 0.00 0.00 33.17 3.07
468 469 0.933097 CGACCAAATCCGAGCATCAG 59.067 55.000 0.00 0.00 33.17 2.90
469 470 1.740380 CGACCAAATCCGAGCATCAGT 60.740 52.381 0.00 0.00 33.17 3.41
470 471 1.667724 GACCAAATCCGAGCATCAGTG 59.332 52.381 0.00 0.00 33.17 3.66
480 481 4.494811 CATCAGTGCTCCGCGTTA 57.505 55.556 4.92 0.00 0.00 3.18
481 482 2.977700 CATCAGTGCTCCGCGTTAT 58.022 52.632 4.92 0.00 0.00 1.89
482 483 2.134201 CATCAGTGCTCCGCGTTATA 57.866 50.000 4.92 0.00 0.00 0.98
483 484 2.054363 CATCAGTGCTCCGCGTTATAG 58.946 52.381 4.92 0.00 0.00 1.31
484 485 1.385528 TCAGTGCTCCGCGTTATAGA 58.614 50.000 4.92 0.00 0.00 1.98
485 486 1.954382 TCAGTGCTCCGCGTTATAGAT 59.046 47.619 4.92 0.00 0.00 1.98
486 487 2.361119 TCAGTGCTCCGCGTTATAGATT 59.639 45.455 4.92 0.00 0.00 2.40
487 488 3.566742 TCAGTGCTCCGCGTTATAGATTA 59.433 43.478 4.92 0.00 0.00 1.75
488 489 3.914966 CAGTGCTCCGCGTTATAGATTAG 59.085 47.826 4.92 0.00 0.00 1.73
489 490 3.057456 AGTGCTCCGCGTTATAGATTAGG 60.057 47.826 4.92 0.00 0.00 2.69
490 491 2.260481 GCTCCGCGTTATAGATTAGGC 58.740 52.381 4.92 0.00 0.00 3.93
491 492 2.352421 GCTCCGCGTTATAGATTAGGCA 60.352 50.000 4.92 0.00 0.00 4.75
492 493 3.243336 CTCCGCGTTATAGATTAGGCAC 58.757 50.000 4.92 0.00 0.00 5.01
493 494 2.624364 TCCGCGTTATAGATTAGGCACA 59.376 45.455 4.92 0.00 0.00 4.57
494 495 3.068448 TCCGCGTTATAGATTAGGCACAA 59.932 43.478 4.92 0.00 0.00 3.33
495 496 3.994392 CCGCGTTATAGATTAGGCACAAT 59.006 43.478 4.92 0.00 0.00 2.71
496 497 4.451096 CCGCGTTATAGATTAGGCACAATT 59.549 41.667 4.92 0.00 0.00 2.32
497 498 5.049680 CCGCGTTATAGATTAGGCACAATTT 60.050 40.000 4.92 0.00 0.00 1.82
498 499 6.427150 CGCGTTATAGATTAGGCACAATTTT 58.573 36.000 0.00 0.00 0.00 1.82
499 500 6.356977 CGCGTTATAGATTAGGCACAATTTTG 59.643 38.462 0.00 0.00 0.00 2.44
500 501 6.636850 GCGTTATAGATTAGGCACAATTTTGG 59.363 38.462 0.00 0.00 0.00 3.28
501 502 7.681065 GCGTTATAGATTAGGCACAATTTTGGT 60.681 37.037 0.00 0.00 0.00 3.67
502 503 7.643764 CGTTATAGATTAGGCACAATTTTGGTG 59.356 37.037 0.00 0.00 39.25 4.17
503 504 4.806640 AGATTAGGCACAATTTTGGTGG 57.193 40.909 0.00 0.00 36.76 4.61
504 505 4.159557 AGATTAGGCACAATTTTGGTGGT 58.840 39.130 0.00 0.00 36.76 4.16
505 506 4.592778 AGATTAGGCACAATTTTGGTGGTT 59.407 37.500 0.00 0.00 36.76 3.67
506 507 4.762289 TTAGGCACAATTTTGGTGGTTT 57.238 36.364 0.00 0.00 36.76 3.27
507 508 3.643199 AGGCACAATTTTGGTGGTTTT 57.357 38.095 0.00 0.00 36.76 2.43
508 509 3.961849 AGGCACAATTTTGGTGGTTTTT 58.038 36.364 0.00 0.00 36.76 1.94
509 510 3.693578 AGGCACAATTTTGGTGGTTTTTG 59.306 39.130 0.00 0.00 36.76 2.44
510 511 3.441922 GGCACAATTTTGGTGGTTTTTGT 59.558 39.130 0.00 0.00 36.76 2.83
511 512 4.410448 GCACAATTTTGGTGGTTTTTGTG 58.590 39.130 8.75 8.75 44.07 3.33
512 513 4.410448 CACAATTTTGGTGGTTTTTGTGC 58.590 39.130 0.00 0.00 37.99 4.57
513 514 3.441922 ACAATTTTGGTGGTTTTTGTGCC 59.558 39.130 0.00 0.00 0.00 5.01
514 515 2.115343 TTTTGGTGGTTTTTGTGCCC 57.885 45.000 0.00 0.00 0.00 5.36
515 516 1.280457 TTTGGTGGTTTTTGTGCCCT 58.720 45.000 0.00 0.00 0.00 5.19
516 517 0.539051 TTGGTGGTTTTTGTGCCCTG 59.461 50.000 0.00 0.00 0.00 4.45
517 518 0.324738 TGGTGGTTTTTGTGCCCTGA 60.325 50.000 0.00 0.00 0.00 3.86
518 519 0.104120 GGTGGTTTTTGTGCCCTGAC 59.896 55.000 0.00 0.00 0.00 3.51
519 520 0.820871 GTGGTTTTTGTGCCCTGACA 59.179 50.000 0.00 0.00 0.00 3.58
520 521 0.820871 TGGTTTTTGTGCCCTGACAC 59.179 50.000 0.00 0.00 41.10 3.67
528 529 0.883833 GTGCCCTGACACAAATCTGG 59.116 55.000 0.00 0.00 40.40 3.86
529 530 0.478072 TGCCCTGACACAAATCTGGT 59.522 50.000 0.00 0.00 36.27 4.00
530 531 1.702401 TGCCCTGACACAAATCTGGTA 59.298 47.619 0.00 0.00 36.27 3.25
531 532 2.308570 TGCCCTGACACAAATCTGGTAT 59.691 45.455 0.00 0.00 36.27 2.73
532 533 2.945668 GCCCTGACACAAATCTGGTATC 59.054 50.000 0.00 0.00 36.27 2.24
533 534 3.622206 GCCCTGACACAAATCTGGTATCA 60.622 47.826 0.00 0.00 36.27 2.15
534 535 4.588899 CCCTGACACAAATCTGGTATCAA 58.411 43.478 0.00 0.00 36.27 2.57
535 536 4.637534 CCCTGACACAAATCTGGTATCAAG 59.362 45.833 0.00 0.00 36.27 3.02
536 537 5.248640 CCTGACACAAATCTGGTATCAAGT 58.751 41.667 0.00 0.00 34.00 3.16
537 538 5.707298 CCTGACACAAATCTGGTATCAAGTT 59.293 40.000 0.00 0.00 34.00 2.66
538 539 6.348786 CCTGACACAAATCTGGTATCAAGTTG 60.349 42.308 0.00 0.00 34.00 3.16
539 540 6.061441 TGACACAAATCTGGTATCAAGTTGT 58.939 36.000 2.11 0.28 0.00 3.32
540 541 6.545666 TGACACAAATCTGGTATCAAGTTGTT 59.454 34.615 2.11 0.00 0.00 2.83
541 542 7.717436 TGACACAAATCTGGTATCAAGTTGTTA 59.283 33.333 2.11 0.00 0.00 2.41
542 543 7.871853 ACACAAATCTGGTATCAAGTTGTTAC 58.128 34.615 13.51 13.51 0.00 2.50
543 544 7.040686 ACACAAATCTGGTATCAAGTTGTTACC 60.041 37.037 26.41 26.41 41.07 2.85
544 545 7.174946 CACAAATCTGGTATCAAGTTGTTACCT 59.825 37.037 30.11 16.38 41.20 3.08
545 546 7.724061 ACAAATCTGGTATCAAGTTGTTACCTT 59.276 33.333 30.11 19.80 41.20 3.50
546 547 9.226606 CAAATCTGGTATCAAGTTGTTACCTTA 57.773 33.333 30.11 22.32 41.20 2.69
547 548 9.449719 AAATCTGGTATCAAGTTGTTACCTTAG 57.550 33.333 30.11 23.46 41.20 2.18
548 549 6.403878 TCTGGTATCAAGTTGTTACCTTAGC 58.596 40.000 30.11 13.80 41.20 3.09
549 550 5.493809 TGGTATCAAGTTGTTACCTTAGCC 58.506 41.667 30.11 13.55 41.20 3.93
550 551 5.013287 TGGTATCAAGTTGTTACCTTAGCCA 59.987 40.000 30.11 15.35 41.20 4.75
551 552 5.353400 GGTATCAAGTTGTTACCTTAGCCAC 59.647 44.000 26.08 6.48 38.84 5.01
552 553 4.425180 TCAAGTTGTTACCTTAGCCACA 57.575 40.909 2.11 0.00 0.00 4.17
553 554 4.783055 TCAAGTTGTTACCTTAGCCACAA 58.217 39.130 2.11 0.00 0.00 3.33
554 555 4.819630 TCAAGTTGTTACCTTAGCCACAAG 59.180 41.667 2.11 0.00 29.85 3.16
555 556 4.432980 AGTTGTTACCTTAGCCACAAGT 57.567 40.909 0.00 0.00 29.85 3.16
556 557 4.134563 AGTTGTTACCTTAGCCACAAGTG 58.865 43.478 0.00 0.00 32.67 3.16
557 558 3.849563 TGTTACCTTAGCCACAAGTGT 57.150 42.857 0.00 0.00 0.00 3.55
558 559 3.472652 TGTTACCTTAGCCACAAGTGTG 58.527 45.455 4.38 4.38 45.23 3.82
568 569 2.292103 CACAAGTGTGGTGGTTTTGG 57.708 50.000 3.39 0.00 42.10 3.28
569 570 1.821753 CACAAGTGTGGTGGTTTTGGA 59.178 47.619 3.39 0.00 42.10 3.53
570 571 2.430332 CACAAGTGTGGTGGTTTTGGAT 59.570 45.455 3.39 0.00 42.10 3.41
571 572 3.634448 CACAAGTGTGGTGGTTTTGGATA 59.366 43.478 3.39 0.00 42.10 2.59
572 573 4.098654 CACAAGTGTGGTGGTTTTGGATAA 59.901 41.667 3.39 0.00 42.10 1.75
573 574 4.712337 ACAAGTGTGGTGGTTTTGGATAAA 59.288 37.500 0.00 0.00 0.00 1.40
574 575 5.365314 ACAAGTGTGGTGGTTTTGGATAAAT 59.635 36.000 0.00 0.00 0.00 1.40
575 576 6.551601 ACAAGTGTGGTGGTTTTGGATAAATA 59.448 34.615 0.00 0.00 0.00 1.40
576 577 7.070074 ACAAGTGTGGTGGTTTTGGATAAATAA 59.930 33.333 0.00 0.00 0.00 1.40
577 578 6.988522 AGTGTGGTGGTTTTGGATAAATAAC 58.011 36.000 0.00 0.00 0.00 1.89
578 579 6.780522 AGTGTGGTGGTTTTGGATAAATAACT 59.219 34.615 0.00 0.00 0.00 2.24
579 580 7.039993 AGTGTGGTGGTTTTGGATAAATAACTC 60.040 37.037 0.00 0.00 0.00 3.01
580 581 7.007723 TGTGGTGGTTTTGGATAAATAACTCT 58.992 34.615 0.00 0.00 0.00 3.24
581 582 7.175990 TGTGGTGGTTTTGGATAAATAACTCTC 59.824 37.037 0.00 0.00 0.00 3.20
582 583 7.393515 GTGGTGGTTTTGGATAAATAACTCTCT 59.606 37.037 0.00 0.00 0.00 3.10
583 584 7.947890 TGGTGGTTTTGGATAAATAACTCTCTT 59.052 33.333 0.00 0.00 0.00 2.85
584 585 8.803235 GGTGGTTTTGGATAAATAACTCTCTTT 58.197 33.333 0.00 0.00 0.00 2.52
619 620 8.693542 AAAATATGCACAAATAAAGAGAGCAC 57.306 30.769 0.00 0.00 32.92 4.40
620 621 7.636150 AATATGCACAAATAAAGAGAGCACT 57.364 32.000 0.00 0.00 32.92 4.40
621 622 5.972107 ATGCACAAATAAAGAGAGCACTT 57.028 34.783 0.00 0.00 32.92 3.16
622 623 5.772825 TGCACAAATAAAGAGAGCACTTT 57.227 34.783 0.00 0.00 41.90 2.66
623 624 5.522456 TGCACAAATAAAGAGAGCACTTTG 58.478 37.500 11.77 2.65 39.86 2.77
624 625 5.067674 TGCACAAATAAAGAGAGCACTTTGT 59.932 36.000 11.77 3.18 39.86 2.83
625 626 6.262049 TGCACAAATAAAGAGAGCACTTTGTA 59.738 34.615 11.77 0.00 39.86 2.41
626 627 6.578919 GCACAAATAAAGAGAGCACTTTGTAC 59.421 38.462 11.77 0.00 39.86 2.90
627 628 7.520614 GCACAAATAAAGAGAGCACTTTGTACT 60.521 37.037 11.77 0.00 39.86 2.73
628 629 8.988934 CACAAATAAAGAGAGCACTTTGTACTA 58.011 33.333 11.77 0.00 39.86 1.82
629 630 8.989980 ACAAATAAAGAGAGCACTTTGTACTAC 58.010 33.333 11.77 0.00 39.86 2.73
630 631 9.209175 CAAATAAAGAGAGCACTTTGTACTACT 57.791 33.333 11.77 0.00 39.86 2.57
631 632 9.780186 AAATAAAGAGAGCACTTTGTACTACTT 57.220 29.630 11.77 0.00 39.86 2.24
632 633 9.780186 AATAAAGAGAGCACTTTGTACTACTTT 57.220 29.630 11.77 0.00 39.86 2.66
633 634 9.780186 ATAAAGAGAGCACTTTGTACTACTTTT 57.220 29.630 11.77 0.00 39.86 2.27
634 635 8.507524 AAAGAGAGCACTTTGTACTACTTTTT 57.492 30.769 0.00 0.00 38.45 1.94
635 636 7.484035 AGAGAGCACTTTGTACTACTTTTTG 57.516 36.000 0.00 0.00 0.00 2.44
636 637 6.483640 AGAGAGCACTTTGTACTACTTTTTGG 59.516 38.462 0.00 0.00 0.00 3.28
637 638 6.354130 AGAGCACTTTGTACTACTTTTTGGA 58.646 36.000 0.00 0.00 0.00 3.53
638 639 6.260271 AGAGCACTTTGTACTACTTTTTGGAC 59.740 38.462 0.00 0.00 0.00 4.02
639 640 6.120220 AGCACTTTGTACTACTTTTTGGACT 58.880 36.000 0.00 0.00 0.00 3.85
640 641 7.277396 AGCACTTTGTACTACTTTTTGGACTA 58.723 34.615 0.00 0.00 0.00 2.59
641 642 7.937394 AGCACTTTGTACTACTTTTTGGACTAT 59.063 33.333 0.00 0.00 0.00 2.12
642 643 9.211485 GCACTTTGTACTACTTTTTGGACTATA 57.789 33.333 0.00 0.00 0.00 1.31
658 659 9.998106 TTTGGACTATATATCTTTTGTAGGCTC 57.002 33.333 0.00 0.00 0.00 4.70
659 660 7.827701 TGGACTATATATCTTTTGTAGGCTCG 58.172 38.462 0.00 0.00 0.00 5.03
660 661 6.752815 GGACTATATATCTTTTGTAGGCTCGC 59.247 42.308 0.00 0.00 0.00 5.03
661 662 7.228314 ACTATATATCTTTTGTAGGCTCGCA 57.772 36.000 0.00 0.00 0.00 5.10
662 663 7.091443 ACTATATATCTTTTGTAGGCTCGCAC 58.909 38.462 0.00 0.00 0.00 5.34
663 664 2.770164 ATCTTTTGTAGGCTCGCACT 57.230 45.000 0.00 0.00 0.00 4.40
664 665 2.543777 TCTTTTGTAGGCTCGCACTT 57.456 45.000 0.00 0.00 0.00 3.16
665 666 2.413837 TCTTTTGTAGGCTCGCACTTC 58.586 47.619 0.00 0.00 0.00 3.01
666 667 2.143122 CTTTTGTAGGCTCGCACTTCA 58.857 47.619 0.00 0.00 0.00 3.02
667 668 2.472695 TTTGTAGGCTCGCACTTCAT 57.527 45.000 0.00 0.00 0.00 2.57
668 669 2.010145 TTGTAGGCTCGCACTTCATC 57.990 50.000 0.00 0.00 0.00 2.92
669 670 0.175760 TGTAGGCTCGCACTTCATCC 59.824 55.000 0.00 0.00 0.00 3.51
670 671 0.530870 GTAGGCTCGCACTTCATCCC 60.531 60.000 0.00 0.00 0.00 3.85
671 672 0.975556 TAGGCTCGCACTTCATCCCA 60.976 55.000 0.00 0.00 0.00 4.37
672 673 2.109126 GGCTCGCACTTCATCCCAC 61.109 63.158 0.00 0.00 0.00 4.61
673 674 1.375908 GCTCGCACTTCATCCCACA 60.376 57.895 0.00 0.00 0.00 4.17
674 675 0.955428 GCTCGCACTTCATCCCACAA 60.955 55.000 0.00 0.00 0.00 3.33
675 676 1.742761 CTCGCACTTCATCCCACAAT 58.257 50.000 0.00 0.00 0.00 2.71
676 677 2.905075 CTCGCACTTCATCCCACAATA 58.095 47.619 0.00 0.00 0.00 1.90
677 678 3.470709 CTCGCACTTCATCCCACAATAT 58.529 45.455 0.00 0.00 0.00 1.28
678 679 4.631131 CTCGCACTTCATCCCACAATATA 58.369 43.478 0.00 0.00 0.00 0.86
679 680 4.377021 TCGCACTTCATCCCACAATATAC 58.623 43.478 0.00 0.00 0.00 1.47
680 681 4.100963 TCGCACTTCATCCCACAATATACT 59.899 41.667 0.00 0.00 0.00 2.12
681 682 5.303333 TCGCACTTCATCCCACAATATACTA 59.697 40.000 0.00 0.00 0.00 1.82
682 683 6.014584 TCGCACTTCATCCCACAATATACTAT 60.015 38.462 0.00 0.00 0.00 2.12
683 684 7.177744 TCGCACTTCATCCCACAATATACTATA 59.822 37.037 0.00 0.00 0.00 1.31
684 685 7.981789 CGCACTTCATCCCACAATATACTATAT 59.018 37.037 0.00 0.00 0.00 0.86
685 686 9.102757 GCACTTCATCCCACAATATACTATATG 57.897 37.037 0.00 0.00 0.00 1.78
686 687 9.102757 CACTTCATCCCACAATATACTATATGC 57.897 37.037 0.00 0.00 0.00 3.14
687 688 9.051259 ACTTCATCCCACAATATACTATATGCT 57.949 33.333 0.00 0.00 0.00 3.79
690 691 9.715119 TCATCCCACAATATACTATATGCTACT 57.285 33.333 0.00 0.00 0.00 2.57
754 755 7.988737 TCGATCCCATATATTTCATGCAATTC 58.011 34.615 0.00 0.00 0.00 2.17
775 776 7.814693 ATTCACCATGCTACTATTATAGGGT 57.185 36.000 4.15 0.00 0.00 4.34
793 813 4.172807 AGGGTACTTTCAGTTACCATGGA 58.827 43.478 21.47 0.00 34.41 3.41
812 1882 2.223805 GGATTGAACATTTCCATCCGCC 60.224 50.000 3.88 0.00 40.73 6.13
816 1886 0.532115 AACATTTCCATCCGCCTTGC 59.468 50.000 0.00 0.00 0.00 4.01
843 1913 1.795889 GCGCCACAAAAGAACGAACAA 60.796 47.619 0.00 0.00 0.00 2.83
850 1920 5.263185 CACAAAAGAACGAACAACGAAGAT 58.737 37.500 0.00 0.00 45.77 2.40
883 1953 5.980715 ACTTTTGCCGGTTTACAATTAACAG 59.019 36.000 1.90 0.00 0.00 3.16
930 2000 1.860950 CGATCGCATCATTTTCGGAGT 59.139 47.619 0.26 0.00 0.00 3.85
944 2014 0.792640 CGGAGTGCAGTGTTCATCAC 59.207 55.000 0.00 0.00 46.46 3.06
998 2069 1.407437 GGTGCTGAGGGTCGATTGATT 60.407 52.381 0.00 0.00 0.00 2.57
1078 2149 4.361971 TCCTCCTCCTCGCCGTGT 62.362 66.667 0.00 0.00 0.00 4.49
1161 2232 4.776322 CCCATTGCCGGACTCGCA 62.776 66.667 5.05 0.00 34.56 5.10
1177 2248 4.421479 CACTCGTCGCGCTCCCTT 62.421 66.667 5.56 0.00 0.00 3.95
1272 2343 3.741476 GTGGAGCGGCAGCCTTTG 61.741 66.667 10.54 0.00 46.67 2.77
1372 3627 2.704616 CGTCAACCAACAACGCGT 59.295 55.556 5.58 5.58 0.00 6.01
1399 3654 1.141881 CACTTCGGGGAGTCCATCG 59.858 63.158 12.30 14.15 34.36 3.84
1502 3757 8.317679 GCATCCTTCCTGATTTAGATATGTACT 58.682 37.037 0.00 0.00 0.00 2.73
1577 3837 4.022676 ACAAATTGGACCGCGAATAGTTTT 60.023 37.500 8.23 0.00 0.00 2.43
1612 3872 8.605746 CACATGACATTTTCTTCAAAACAACAT 58.394 29.630 0.00 0.00 34.24 2.71
1613 3873 8.605746 ACATGACATTTTCTTCAAAACAACATG 58.394 29.630 0.00 0.00 40.09 3.21
1637 3915 5.126779 ACAGTTTCTTTTCAGAGGAAGACC 58.873 41.667 0.00 0.00 33.82 3.85
1681 4060 7.978975 TGATTCATTGTACGACAATATGAGTGA 59.021 33.333 11.26 4.88 46.22 3.41
1725 4104 0.329261 CCATTGACCTCTCCCTTGCA 59.671 55.000 0.00 0.00 0.00 4.08
1732 4111 1.101331 CCTCTCCCTTGCAATTGCTC 58.899 55.000 29.37 4.02 42.66 4.26
1734 4113 1.743958 CTCTCCCTTGCAATTGCTCAG 59.256 52.381 29.37 23.20 42.66 3.35
1758 4137 5.594926 CAACCTTTTCTTTCTCTTGCACAT 58.405 37.500 0.00 0.00 0.00 3.21
1792 4171 0.889186 ACGCATTGTGGTCTGGGTTC 60.889 55.000 1.77 0.00 35.28 3.62
1806 4185 3.055385 TCTGGGTTCGGATAAGAGGTTTG 60.055 47.826 0.00 0.00 0.00 2.93
1808 4187 3.268330 GGGTTCGGATAAGAGGTTTGTC 58.732 50.000 0.00 0.00 0.00 3.18
1810 4189 4.514401 GGTTCGGATAAGAGGTTTGTCAT 58.486 43.478 0.00 0.00 0.00 3.06
1813 4192 5.160607 TCGGATAAGAGGTTTGTCATTGT 57.839 39.130 0.00 0.00 0.00 2.71
1828 4207 4.586421 TGTCATTGTGGTTTCCAATGCTTA 59.414 37.500 7.97 0.00 45.57 3.09
1832 4211 4.098914 TGTGGTTTCCAATGCTTAGAGT 57.901 40.909 0.00 0.00 34.18 3.24
1855 4234 2.891580 TCTACAATCGGAGCCCTCATAC 59.108 50.000 0.00 0.00 0.00 2.39
1861 4240 1.182385 CGGAGCCCTCATACTCTCCC 61.182 65.000 0.00 0.00 41.48 4.30
1892 4271 1.342672 ACGGAGAACCCAACCACTGT 61.343 55.000 0.00 0.00 34.14 3.55
1910 4289 2.084596 TCCGGACAGGAGAGAAGGA 58.915 57.895 0.00 0.00 45.98 3.36
1934 4313 4.404098 GTCGCCCAACCGGACCAT 62.404 66.667 9.46 0.00 0.00 3.55
1988 4367 6.605594 ACACAAATTACTATACCCAACCCATG 59.394 38.462 0.00 0.00 0.00 3.66
2005 4384 7.275183 CAACCCATGTATGAAGAAGATACAGA 58.725 38.462 0.00 0.00 39.16 3.41
2023 4402 2.046892 GATGTCTGGGCAGTGCGT 60.047 61.111 9.45 0.00 0.00 5.24
2085 4464 7.174426 TCGTTCTTTATTCTTTCTTTTCTCCCC 59.826 37.037 0.00 0.00 0.00 4.81
2099 4483 1.219213 TCTCCCCCTCTCTCTTCATCC 59.781 57.143 0.00 0.00 0.00 3.51
2103 4487 1.415716 CCCCTCTCTCTTCATCCCCAT 60.416 57.143 0.00 0.00 0.00 4.00
2137 4522 0.887247 TGACGCACAAATTGGGATGG 59.113 50.000 0.00 0.00 40.70 3.51
2178 4563 1.207329 GTAGAGGGTCAAAGCGGACAT 59.793 52.381 8.17 0.00 39.59 3.06
2198 4583 1.478916 TCCTATCGGATGCGTTCACAA 59.521 47.619 6.49 0.00 33.30 3.33
2199 4584 1.593006 CCTATCGGATGCGTTCACAAC 59.407 52.381 6.49 0.00 0.00 3.32
2211 4596 2.754472 GTTCACAACAATTTGAGGGGC 58.246 47.619 2.79 0.00 36.48 5.80
2269 4654 1.821666 GCTTAGAGAGGAGGCCGATCT 60.822 57.143 7.07 7.07 0.00 2.75
2322 4717 0.540597 GAATATCCAAGGGCCCAGGC 60.541 60.000 27.56 8.29 41.06 4.85
2339 4734 1.341802 GCAGTCGTTGCGATTCGAG 59.658 57.895 10.88 0.00 44.09 4.04
2340 4735 1.071019 GCAGTCGTTGCGATTCGAGA 61.071 55.000 10.88 0.24 44.09 4.04
2342 4737 0.793478 AGTCGTTGCGATTCGAGACG 60.793 55.000 21.01 21.01 38.42 4.18
2350 4745 1.514811 GCGATTCGAGACGACAATCTG 59.485 52.381 10.88 0.00 34.89 2.90
2380 4775 5.305644 ACAGTTGAGATGGTAGAGAACAAGT 59.694 40.000 0.00 0.00 0.00 3.16
2430 5748 4.343814 GGGTATTCTCTCTCTCCTCTTTGG 59.656 50.000 0.00 0.00 37.10 3.28
2464 5782 1.902432 GATCTCGGGTAGGGGTCCG 60.902 68.421 0.00 0.00 0.00 4.79
2483 5801 1.405121 CGGAACAGGTAGCCTTGGTAC 60.405 57.143 0.00 0.00 36.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.367340 TTGATGTGTGCGTGCGCG 62.367 61.111 16.86 16.86 45.51 6.86
5 6 1.441515 CAGCTTGATGTGTGCGTGC 60.442 57.895 0.00 0.00 0.00 5.34
6 7 0.110509 GACAGCTTGATGTGTGCGTG 60.111 55.000 0.00 0.00 32.25 5.34
7 8 0.532640 TGACAGCTTGATGTGTGCGT 60.533 50.000 0.00 0.00 32.25 5.24
8 9 0.110509 GTGACAGCTTGATGTGTGCG 60.111 55.000 0.00 0.00 32.25 5.34
9 10 0.110509 CGTGACAGCTTGATGTGTGC 60.111 55.000 0.00 0.00 32.25 4.57
10 11 0.514255 CCGTGACAGCTTGATGTGTG 59.486 55.000 0.00 0.00 32.25 3.82
11 12 0.106708 ACCGTGACAGCTTGATGTGT 59.893 50.000 0.00 0.00 32.25 3.72
12 13 0.792640 GACCGTGACAGCTTGATGTG 59.207 55.000 0.00 0.00 32.25 3.21
13 14 0.667487 CGACCGTGACAGCTTGATGT 60.667 55.000 0.00 0.00 35.68 3.06
14 15 0.667487 ACGACCGTGACAGCTTGATG 60.667 55.000 0.00 0.00 0.00 3.07
15 16 0.388649 GACGACCGTGACAGCTTGAT 60.389 55.000 0.00 0.00 0.00 2.57
16 17 1.007734 GACGACCGTGACAGCTTGA 60.008 57.895 0.00 0.00 0.00 3.02
17 18 2.365068 CGACGACCGTGACAGCTTG 61.365 63.158 0.00 0.00 0.00 4.01
18 19 2.050351 CGACGACCGTGACAGCTT 60.050 61.111 0.00 0.00 0.00 3.74
19 20 2.976350 TCGACGACCGTGACAGCT 60.976 61.111 0.00 0.00 39.75 4.24
20 21 2.797866 ATGTCGACGACCGTGACAGC 62.798 60.000 24.33 0.00 44.94 4.40
21 22 0.793478 GATGTCGACGACCGTGACAG 60.793 60.000 24.33 6.05 44.94 3.51
22 23 1.208358 GATGTCGACGACCGTGACA 59.792 57.895 24.33 20.72 45.71 3.58
23 24 1.513586 GGATGTCGACGACCGTGAC 60.514 63.158 24.33 10.97 39.75 3.67
24 25 2.693762 GGGATGTCGACGACCGTGA 61.694 63.158 24.33 6.87 39.75 4.35
25 26 2.202570 GGGATGTCGACGACCGTG 60.203 66.667 24.33 0.00 39.75 4.94
26 27 3.807538 CGGGATGTCGACGACCGT 61.808 66.667 26.99 13.56 39.70 4.83
28 29 4.867599 GGCGGGATGTCGACGACC 62.868 72.222 24.33 18.47 0.00 4.79
99 100 3.965539 CTTGGCAGGAGGAGGTGCG 62.966 68.421 0.00 0.00 40.82 5.34
100 101 2.045536 CTTGGCAGGAGGAGGTGC 60.046 66.667 0.00 0.00 39.08 5.01
101 102 2.045536 GCTTGGCAGGAGGAGGTG 60.046 66.667 0.00 0.00 0.00 4.00
102 103 2.156098 TTGCTTGGCAGGAGGAGGT 61.156 57.895 0.00 0.00 40.61 3.85
103 104 1.676967 GTTGCTTGGCAGGAGGAGG 60.677 63.158 0.00 0.00 40.61 4.30
104 105 0.615331 TAGTTGCTTGGCAGGAGGAG 59.385 55.000 0.00 0.00 40.61 3.69
105 106 1.065199 CATAGTTGCTTGGCAGGAGGA 60.065 52.381 0.00 0.00 40.61 3.71
106 107 1.386533 CATAGTTGCTTGGCAGGAGG 58.613 55.000 0.00 0.00 40.61 4.30
107 108 1.386533 CCATAGTTGCTTGGCAGGAG 58.613 55.000 0.00 0.00 40.61 3.69
108 109 3.575506 CCATAGTTGCTTGGCAGGA 57.424 52.632 0.00 0.00 40.61 3.86
113 114 1.802636 CACCGCCATAGTTGCTTGG 59.197 57.895 0.00 0.00 36.03 3.61
114 115 1.137404 GCACCGCCATAGTTGCTTG 59.863 57.895 0.00 0.00 0.00 4.01
115 116 0.680921 ATGCACCGCCATAGTTGCTT 60.681 50.000 0.00 0.00 0.00 3.91
116 117 1.077501 ATGCACCGCCATAGTTGCT 60.078 52.632 0.00 0.00 0.00 3.91
117 118 1.356624 GATGCACCGCCATAGTTGC 59.643 57.895 0.00 0.00 0.00 4.17
118 119 1.447317 GGGATGCACCGCCATAGTTG 61.447 60.000 0.00 0.00 40.11 3.16
119 120 1.152963 GGGATGCACCGCCATAGTT 60.153 57.895 0.00 0.00 40.11 2.24
120 121 2.510906 GGGATGCACCGCCATAGT 59.489 61.111 0.00 0.00 40.11 2.12
143 144 2.069838 CGTAGAGCTCGTATGCGCG 61.070 63.158 8.37 0.00 37.81 6.86
144 145 1.726322 CCGTAGAGCTCGTATGCGC 60.726 63.158 8.37 0.00 38.14 6.09
145 146 1.726322 GCCGTAGAGCTCGTATGCG 60.726 63.158 8.37 6.52 38.13 4.73
146 147 1.726322 CGCCGTAGAGCTCGTATGC 60.726 63.158 8.37 9.47 0.00 3.14
147 148 1.726322 GCGCCGTAGAGCTCGTATG 60.726 63.158 8.37 6.74 0.00 2.39
148 149 2.184830 TGCGCCGTAGAGCTCGTAT 61.185 57.895 8.37 0.00 32.71 3.06
149 150 2.820922 TGCGCCGTAGAGCTCGTA 60.821 61.111 8.37 0.00 32.71 3.43
150 151 4.477975 GTGCGCCGTAGAGCTCGT 62.478 66.667 8.37 0.00 32.71 4.18
151 152 4.476410 TGTGCGCCGTAGAGCTCG 62.476 66.667 8.37 0.00 32.71 5.03
152 153 2.881352 GTGTGCGCCGTAGAGCTC 60.881 66.667 5.27 5.27 32.71 4.09
153 154 4.778415 CGTGTGCGCCGTAGAGCT 62.778 66.667 4.18 0.00 32.71 4.09
173 174 4.459089 GTCACTCCCTGGAGCGCC 62.459 72.222 13.15 0.00 45.54 6.53
174 175 4.803426 CGTCACTCCCTGGAGCGC 62.803 72.222 13.15 0.00 45.54 5.92
175 176 4.135153 CCGTCACTCCCTGGAGCG 62.135 72.222 13.15 8.64 45.54 5.03
176 177 4.459089 GCCGTCACTCCCTGGAGC 62.459 72.222 13.15 0.00 45.54 4.70
177 178 2.362369 ATGCCGTCACTCCCTGGAG 61.362 63.158 11.68 11.68 46.91 3.86
178 179 2.284625 ATGCCGTCACTCCCTGGA 60.285 61.111 0.00 0.00 0.00 3.86
179 180 2.124983 CATGCCGTCACTCCCTGG 60.125 66.667 0.00 0.00 0.00 4.45
180 181 2.124983 CCATGCCGTCACTCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
181 182 2.607750 ACCATGCCGTCACTCCCT 60.608 61.111 0.00 0.00 0.00 4.20
182 183 2.436646 CACCATGCCGTCACTCCC 60.437 66.667 0.00 0.00 0.00 4.30
183 184 2.436646 CCACCATGCCGTCACTCC 60.437 66.667 0.00 0.00 0.00 3.85
184 185 0.392998 ATTCCACCATGCCGTCACTC 60.393 55.000 0.00 0.00 0.00 3.51
185 186 0.392998 GATTCCACCATGCCGTCACT 60.393 55.000 0.00 0.00 0.00 3.41
186 187 1.376609 GGATTCCACCATGCCGTCAC 61.377 60.000 0.00 0.00 0.00 3.67
187 188 1.077787 GGATTCCACCATGCCGTCA 60.078 57.895 0.00 0.00 0.00 4.35
188 189 1.823899 GGGATTCCACCATGCCGTC 60.824 63.158 4.80 0.00 0.00 4.79
189 190 1.936767 ATGGGATTCCACCATGCCGT 61.937 55.000 0.00 0.00 46.57 5.68
190 191 1.152694 ATGGGATTCCACCATGCCG 60.153 57.895 0.00 0.00 46.57 5.69
199 200 2.591715 CGGACCGCATGGGATTCC 60.592 66.667 12.02 14.59 40.75 3.01
200 201 2.180204 CACGGACCGCATGGGATTC 61.180 63.158 15.39 7.04 40.75 2.52
201 202 2.124736 CACGGACCGCATGGGATT 60.125 61.111 15.39 0.00 40.75 3.01
202 203 3.080765 TCACGGACCGCATGGGAT 61.081 61.111 15.39 0.00 40.75 3.85
203 204 3.770040 CTCACGGACCGCATGGGA 61.770 66.667 15.39 3.28 40.75 4.37
205 206 4.758251 TGCTCACGGACCGCATGG 62.758 66.667 15.39 3.03 42.84 3.66
206 207 2.512286 ATGCTCACGGACCGCATG 60.512 61.111 15.39 5.91 42.30 4.06
207 208 2.202932 GATGCTCACGGACCGCAT 60.203 61.111 15.39 9.18 46.15 4.73
208 209 4.794439 CGATGCTCACGGACCGCA 62.794 66.667 15.39 3.68 38.14 5.69
209 210 4.492160 TCGATGCTCACGGACCGC 62.492 66.667 15.39 0.00 0.00 5.68
210 211 2.579787 GTCGATGCTCACGGACCG 60.580 66.667 13.61 13.61 0.00 4.79
211 212 2.579787 CGTCGATGCTCACGGACC 60.580 66.667 0.00 0.00 32.19 4.46
215 216 2.880879 CCACCGTCGATGCTCACG 60.881 66.667 0.00 0.00 35.72 4.35
216 217 3.188786 GCCACCGTCGATGCTCAC 61.189 66.667 0.00 0.00 0.00 3.51
217 218 4.794439 CGCCACCGTCGATGCTCA 62.794 66.667 0.00 0.00 0.00 4.26
242 243 2.804368 AAGACTTCGGCTGCTCGTCG 62.804 60.000 0.00 0.00 43.46 5.12
243 244 1.073768 GAAGACTTCGGCTGCTCGTC 61.074 60.000 0.00 1.66 0.00 4.20
244 245 1.080434 GAAGACTTCGGCTGCTCGT 60.080 57.895 0.00 0.00 0.00 4.18
245 246 3.773974 GAAGACTTCGGCTGCTCG 58.226 61.111 0.00 1.60 0.00 5.03
270 271 2.597510 AACAAGGAGGTTGCGGGC 60.598 61.111 0.00 0.00 40.15 6.13
271 272 0.821711 TTCAACAAGGAGGTTGCGGG 60.822 55.000 0.00 0.00 45.98 6.13
272 273 1.028905 TTTCAACAAGGAGGTTGCGG 58.971 50.000 0.00 0.00 45.98 5.69
273 274 2.664916 CATTTCAACAAGGAGGTTGCG 58.335 47.619 0.00 0.00 45.98 4.85
274 275 2.407090 GCATTTCAACAAGGAGGTTGC 58.593 47.619 0.00 0.00 45.98 4.17
276 277 2.676748 TGGCATTTCAACAAGGAGGTT 58.323 42.857 0.00 0.00 0.00 3.50
277 278 2.380064 TGGCATTTCAACAAGGAGGT 57.620 45.000 0.00 0.00 0.00 3.85
278 279 3.592059 CATTGGCATTTCAACAAGGAGG 58.408 45.455 0.00 0.00 0.00 4.30
279 280 3.592059 CCATTGGCATTTCAACAAGGAG 58.408 45.455 0.00 0.00 0.00 3.69
280 281 2.302445 CCCATTGGCATTTCAACAAGGA 59.698 45.455 0.00 0.00 0.00 3.36
281 282 2.302445 TCCCATTGGCATTTCAACAAGG 59.698 45.455 0.00 0.00 0.00 3.61
282 283 3.258872 TCTCCCATTGGCATTTCAACAAG 59.741 43.478 0.00 0.00 0.00 3.16
283 284 3.237746 TCTCCCATTGGCATTTCAACAA 58.762 40.909 0.00 0.00 0.00 2.83
284 285 2.886913 TCTCCCATTGGCATTTCAACA 58.113 42.857 0.00 0.00 0.00 3.33
285 286 3.959535 TTCTCCCATTGGCATTTCAAC 57.040 42.857 0.00 0.00 0.00 3.18
286 287 4.592351 TCTTTTCTCCCATTGGCATTTCAA 59.408 37.500 0.00 0.00 0.00 2.69
287 288 4.158786 TCTTTTCTCCCATTGGCATTTCA 58.841 39.130 0.00 0.00 0.00 2.69
288 289 4.382362 CCTCTTTTCTCCCATTGGCATTTC 60.382 45.833 0.00 0.00 0.00 2.17
289 290 3.516700 CCTCTTTTCTCCCATTGGCATTT 59.483 43.478 0.00 0.00 0.00 2.32
290 291 3.102204 CCTCTTTTCTCCCATTGGCATT 58.898 45.455 0.00 0.00 0.00 3.56
291 292 2.312741 TCCTCTTTTCTCCCATTGGCAT 59.687 45.455 0.00 0.00 0.00 4.40
292 293 1.710244 TCCTCTTTTCTCCCATTGGCA 59.290 47.619 0.00 0.00 0.00 4.92
293 294 2.514458 TCCTCTTTTCTCCCATTGGC 57.486 50.000 0.00 0.00 0.00 4.52
294 295 4.307032 TCTTCCTCTTTTCTCCCATTGG 57.693 45.455 0.00 0.00 0.00 3.16
295 296 6.847421 ATTTCTTCCTCTTTTCTCCCATTG 57.153 37.500 0.00 0.00 0.00 2.82
296 297 8.956446 TTTATTTCTTCCTCTTTTCTCCCATT 57.044 30.769 0.00 0.00 0.00 3.16
297 298 8.956446 TTTTATTTCTTCCTCTTTTCTCCCAT 57.044 30.769 0.00 0.00 0.00 4.00
298 299 8.776061 TTTTTATTTCTTCCTCTTTTCTCCCA 57.224 30.769 0.00 0.00 0.00 4.37
299 300 9.078990 TCTTTTTATTTCTTCCTCTTTTCTCCC 57.921 33.333 0.00 0.00 0.00 4.30
341 342 6.307800 CGTTTGTCAATGACTCAAGTGTTTTT 59.692 34.615 14.97 0.00 33.15 1.94
342 343 5.799936 CGTTTGTCAATGACTCAAGTGTTTT 59.200 36.000 14.97 0.00 33.15 2.43
343 344 5.331902 CGTTTGTCAATGACTCAAGTGTTT 58.668 37.500 14.97 0.00 33.15 2.83
344 345 4.201910 CCGTTTGTCAATGACTCAAGTGTT 60.202 41.667 14.97 0.00 33.15 3.32
345 346 3.312421 CCGTTTGTCAATGACTCAAGTGT 59.688 43.478 14.97 0.00 33.15 3.55
346 347 3.303990 CCCGTTTGTCAATGACTCAAGTG 60.304 47.826 14.97 3.73 33.15 3.16
347 348 2.878406 CCCGTTTGTCAATGACTCAAGT 59.122 45.455 14.97 0.00 33.15 3.16
348 349 3.058914 GTCCCGTTTGTCAATGACTCAAG 60.059 47.826 14.97 3.53 33.15 3.02
349 350 2.875933 GTCCCGTTTGTCAATGACTCAA 59.124 45.455 14.97 4.84 33.15 3.02
350 351 2.158885 TGTCCCGTTTGTCAATGACTCA 60.159 45.455 14.97 0.00 33.15 3.41
351 352 2.223377 GTGTCCCGTTTGTCAATGACTC 59.777 50.000 14.97 4.63 33.15 3.36
352 353 2.158813 AGTGTCCCGTTTGTCAATGACT 60.159 45.455 14.97 0.00 33.15 3.41
353 354 2.218603 AGTGTCCCGTTTGTCAATGAC 58.781 47.619 6.41 6.41 0.00 3.06
354 355 2.104111 AGAGTGTCCCGTTTGTCAATGA 59.896 45.455 0.00 0.00 0.00 2.57
355 356 2.494059 AGAGTGTCCCGTTTGTCAATG 58.506 47.619 0.00 0.00 0.00 2.82
356 357 2.930826 AGAGTGTCCCGTTTGTCAAT 57.069 45.000 0.00 0.00 0.00 2.57
357 358 2.557317 GAAGAGTGTCCCGTTTGTCAA 58.443 47.619 0.00 0.00 0.00 3.18
358 359 1.202604 GGAAGAGTGTCCCGTTTGTCA 60.203 52.381 0.00 0.00 0.00 3.58
359 360 1.202604 TGGAAGAGTGTCCCGTTTGTC 60.203 52.381 0.00 0.00 36.80 3.18
360 361 0.834612 TGGAAGAGTGTCCCGTTTGT 59.165 50.000 0.00 0.00 36.80 2.83
361 362 1.602377 GTTGGAAGAGTGTCCCGTTTG 59.398 52.381 0.00 0.00 36.80 2.93
362 363 1.489230 AGTTGGAAGAGTGTCCCGTTT 59.511 47.619 0.00 0.00 36.80 3.60
363 364 1.070289 GAGTTGGAAGAGTGTCCCGTT 59.930 52.381 0.00 0.00 36.80 4.44
364 365 0.680061 GAGTTGGAAGAGTGTCCCGT 59.320 55.000 0.00 0.00 36.80 5.28
365 366 0.679505 TGAGTTGGAAGAGTGTCCCG 59.320 55.000 0.00 0.00 36.80 5.14
366 367 1.609320 GCTGAGTTGGAAGAGTGTCCC 60.609 57.143 0.00 0.00 36.80 4.46
367 368 1.070758 TGCTGAGTTGGAAGAGTGTCC 59.929 52.381 0.00 0.00 38.27 4.02
368 369 2.533266 TGCTGAGTTGGAAGAGTGTC 57.467 50.000 0.00 0.00 0.00 3.67
369 370 4.833478 ATATGCTGAGTTGGAAGAGTGT 57.167 40.909 0.00 0.00 0.00 3.55
370 371 4.940046 ACAATATGCTGAGTTGGAAGAGTG 59.060 41.667 0.00 0.00 0.00 3.51
371 372 5.171339 ACAATATGCTGAGTTGGAAGAGT 57.829 39.130 0.00 0.00 0.00 3.24
372 373 4.269603 CGACAATATGCTGAGTTGGAAGAG 59.730 45.833 0.00 0.00 0.00 2.85
373 374 4.183865 CGACAATATGCTGAGTTGGAAGA 58.816 43.478 0.00 0.00 0.00 2.87
374 375 3.242543 GCGACAATATGCTGAGTTGGAAG 60.243 47.826 0.00 0.00 0.00 3.46
375 376 2.677836 GCGACAATATGCTGAGTTGGAA 59.322 45.455 0.00 0.00 0.00 3.53
376 377 2.279741 GCGACAATATGCTGAGTTGGA 58.720 47.619 0.00 0.00 0.00 3.53
377 378 2.009051 TGCGACAATATGCTGAGTTGG 58.991 47.619 0.00 0.00 0.00 3.77
378 379 2.535534 CGTGCGACAATATGCTGAGTTG 60.536 50.000 0.00 0.00 0.00 3.16
379 380 1.660607 CGTGCGACAATATGCTGAGTT 59.339 47.619 0.00 0.00 0.00 3.01
380 381 1.280982 CGTGCGACAATATGCTGAGT 58.719 50.000 0.00 0.00 0.00 3.41
381 382 0.042708 GCGTGCGACAATATGCTGAG 60.043 55.000 0.00 0.00 0.00 3.35
382 383 1.428370 GGCGTGCGACAATATGCTGA 61.428 55.000 0.00 0.00 0.00 4.26
383 384 1.010797 GGCGTGCGACAATATGCTG 60.011 57.895 0.00 0.00 0.00 4.41
384 385 1.024046 TTGGCGTGCGACAATATGCT 61.024 50.000 8.95 0.00 38.36 3.79
385 386 0.179176 TTTGGCGTGCGACAATATGC 60.179 50.000 13.86 0.00 43.37 3.14
386 387 2.223226 TGATTTGGCGTGCGACAATATG 60.223 45.455 13.86 0.00 43.37 1.78
387 388 2.013400 TGATTTGGCGTGCGACAATAT 58.987 42.857 13.86 9.96 43.37 1.28
388 389 1.396648 CTGATTTGGCGTGCGACAATA 59.603 47.619 13.86 5.72 43.37 1.90
389 390 0.168788 CTGATTTGGCGTGCGACAAT 59.831 50.000 13.86 4.47 43.37 2.71
390 391 1.573932 CTGATTTGGCGTGCGACAA 59.426 52.632 8.95 8.95 42.05 3.18
391 392 2.965147 GCTGATTTGGCGTGCGACA 61.965 57.895 0.00 0.00 0.00 4.35
392 393 2.202349 GCTGATTTGGCGTGCGAC 60.202 61.111 0.00 0.00 0.00 5.19
393 394 3.430862 GGCTGATTTGGCGTGCGA 61.431 61.111 0.00 0.00 0.00 5.10
394 395 3.434319 AGGCTGATTTGGCGTGCG 61.434 61.111 0.00 0.00 37.59 5.34
395 396 2.180017 CAGGCTGATTTGGCGTGC 59.820 61.111 9.42 0.00 38.42 5.34
396 397 1.236616 TGTCAGGCTGATTTGGCGTG 61.237 55.000 21.84 0.00 43.94 5.34
397 398 0.957395 CTGTCAGGCTGATTTGGCGT 60.957 55.000 21.84 0.00 37.59 5.68
398 399 1.651240 CCTGTCAGGCTGATTTGGCG 61.651 60.000 21.84 5.69 37.59 5.69
399 400 2.187073 CCTGTCAGGCTGATTTGGC 58.813 57.895 21.84 7.82 0.00 4.52
410 411 2.746375 AATAGGGCCCGCCTGTCAG 61.746 63.158 18.44 0.00 36.10 3.51
411 412 2.690881 AATAGGGCCCGCCTGTCA 60.691 61.111 18.44 0.00 36.10 3.58
412 413 2.203209 CAATAGGGCCCGCCTGTC 60.203 66.667 18.44 0.00 36.10 3.51
413 414 3.809013 CCAATAGGGCCCGCCTGT 61.809 66.667 18.44 0.00 36.10 4.00
414 415 3.774599 GACCAATAGGGCCCGCCTG 62.775 68.421 18.44 14.47 42.05 4.85
415 416 3.489513 GACCAATAGGGCCCGCCT 61.490 66.667 18.44 0.39 42.05 5.52
416 417 3.774599 CTGACCAATAGGGCCCGCC 62.775 68.421 18.44 0.00 45.14 6.13
417 418 2.203209 CTGACCAATAGGGCCCGC 60.203 66.667 18.44 1.50 45.14 6.13
418 419 0.034477 AAACTGACCAATAGGGCCCG 60.034 55.000 18.44 3.62 45.14 6.13
419 420 1.763968 GAAACTGACCAATAGGGCCC 58.236 55.000 16.46 16.46 45.14 5.80
420 421 1.379527 CGAAACTGACCAATAGGGCC 58.620 55.000 0.00 0.00 45.14 5.80
421 422 0.733150 GCGAAACTGACCAATAGGGC 59.267 55.000 0.00 0.00 46.36 5.19
422 423 2.403252 AGCGAAACTGACCAATAGGG 57.597 50.000 0.00 0.00 44.81 3.53
433 434 1.865340 GGTCGAGAAAACAGCGAAACT 59.135 47.619 0.00 0.00 35.66 2.66
434 435 1.595794 TGGTCGAGAAAACAGCGAAAC 59.404 47.619 0.00 0.00 35.66 2.78
435 436 1.942677 TGGTCGAGAAAACAGCGAAA 58.057 45.000 0.00 0.00 35.66 3.46
436 437 1.942677 TTGGTCGAGAAAACAGCGAA 58.057 45.000 0.00 0.00 35.66 4.70
437 438 1.942677 TTTGGTCGAGAAAACAGCGA 58.057 45.000 0.00 0.00 0.00 4.93
438 439 2.412847 GGATTTGGTCGAGAAAACAGCG 60.413 50.000 0.00 0.00 0.00 5.18
439 440 2.412847 CGGATTTGGTCGAGAAAACAGC 60.413 50.000 0.00 0.00 0.00 4.40
440 441 3.064207 TCGGATTTGGTCGAGAAAACAG 58.936 45.455 0.00 0.00 0.00 3.16
441 442 3.114668 TCGGATTTGGTCGAGAAAACA 57.885 42.857 0.00 0.00 0.00 2.83
448 449 0.534873 TGATGCTCGGATTTGGTCGA 59.465 50.000 0.00 0.00 0.00 4.20
449 450 0.933097 CTGATGCTCGGATTTGGTCG 59.067 55.000 0.00 0.00 0.00 4.79
450 451 1.667724 CACTGATGCTCGGATTTGGTC 59.332 52.381 0.00 0.00 0.00 4.02
451 452 1.742761 CACTGATGCTCGGATTTGGT 58.257 50.000 0.00 0.00 0.00 3.67
471 472 3.243336 GTGCCTAATCTATAACGCGGAG 58.757 50.000 12.47 1.75 0.00 4.63
472 473 2.624364 TGTGCCTAATCTATAACGCGGA 59.376 45.455 12.47 0.00 0.00 5.54
473 474 3.021269 TGTGCCTAATCTATAACGCGG 57.979 47.619 12.47 0.00 0.00 6.46
474 475 5.591643 AATTGTGCCTAATCTATAACGCG 57.408 39.130 3.53 3.53 0.00 6.01
475 476 6.636850 CCAAAATTGTGCCTAATCTATAACGC 59.363 38.462 0.00 0.00 0.00 4.84
476 477 7.643764 CACCAAAATTGTGCCTAATCTATAACG 59.356 37.037 0.00 0.00 0.00 3.18
477 478 7.920682 CCACCAAAATTGTGCCTAATCTATAAC 59.079 37.037 0.00 0.00 0.00 1.89
478 479 7.617723 ACCACCAAAATTGTGCCTAATCTATAA 59.382 33.333 0.00 0.00 0.00 0.98
479 480 7.122715 ACCACCAAAATTGTGCCTAATCTATA 58.877 34.615 0.00 0.00 0.00 1.31
480 481 5.957774 ACCACCAAAATTGTGCCTAATCTAT 59.042 36.000 0.00 0.00 0.00 1.98
481 482 5.329399 ACCACCAAAATTGTGCCTAATCTA 58.671 37.500 0.00 0.00 0.00 1.98
482 483 4.159557 ACCACCAAAATTGTGCCTAATCT 58.840 39.130 0.00 0.00 0.00 2.40
483 484 4.535526 ACCACCAAAATTGTGCCTAATC 57.464 40.909 0.00 0.00 0.00 1.75
484 485 4.972751 AACCACCAAAATTGTGCCTAAT 57.027 36.364 0.00 0.00 0.00 1.73
485 486 4.762289 AAACCACCAAAATTGTGCCTAA 57.238 36.364 0.00 0.00 0.00 2.69
486 487 4.762289 AAAACCACCAAAATTGTGCCTA 57.238 36.364 0.00 0.00 0.00 3.93
487 488 3.643199 AAAACCACCAAAATTGTGCCT 57.357 38.095 0.00 0.00 0.00 4.75
488 489 3.441922 ACAAAAACCACCAAAATTGTGCC 59.558 39.130 0.00 0.00 30.46 5.01
489 490 4.410448 CACAAAAACCACCAAAATTGTGC 58.590 39.130 3.83 0.00 40.52 4.57
490 491 4.410448 GCACAAAAACCACCAAAATTGTG 58.590 39.130 11.04 11.04 46.28 3.33
491 492 3.441922 GGCACAAAAACCACCAAAATTGT 59.558 39.130 0.00 0.00 0.00 2.71
492 493 3.181492 GGGCACAAAAACCACCAAAATTG 60.181 43.478 0.00 0.00 0.00 2.32
493 494 3.020274 GGGCACAAAAACCACCAAAATT 58.980 40.909 0.00 0.00 0.00 1.82
494 495 2.240921 AGGGCACAAAAACCACCAAAAT 59.759 40.909 0.00 0.00 0.00 1.82
495 496 1.630878 AGGGCACAAAAACCACCAAAA 59.369 42.857 0.00 0.00 0.00 2.44
496 497 1.065854 CAGGGCACAAAAACCACCAAA 60.066 47.619 0.00 0.00 0.00 3.28
497 498 0.539051 CAGGGCACAAAAACCACCAA 59.461 50.000 0.00 0.00 0.00 3.67
498 499 0.324738 TCAGGGCACAAAAACCACCA 60.325 50.000 0.00 0.00 0.00 4.17
499 500 0.104120 GTCAGGGCACAAAAACCACC 59.896 55.000 0.00 0.00 0.00 4.61
500 501 0.820871 TGTCAGGGCACAAAAACCAC 59.179 50.000 0.00 0.00 0.00 4.16
501 502 0.820871 GTGTCAGGGCACAAAAACCA 59.179 50.000 0.00 0.00 39.07 3.67
502 503 0.820871 TGTGTCAGGGCACAAAAACC 59.179 50.000 3.91 0.00 45.17 3.27
508 509 1.608055 CAGATTTGTGTCAGGGCACA 58.392 50.000 2.00 2.00 46.30 4.57
509 510 0.883833 CCAGATTTGTGTCAGGGCAC 59.116 55.000 0.00 0.00 39.65 5.01
510 511 0.478072 ACCAGATTTGTGTCAGGGCA 59.522 50.000 0.00 0.00 0.00 5.36
511 512 2.489938 TACCAGATTTGTGTCAGGGC 57.510 50.000 0.00 0.00 0.00 5.19
512 513 4.220693 TGATACCAGATTTGTGTCAGGG 57.779 45.455 0.00 0.00 31.39 4.45
513 514 5.248640 ACTTGATACCAGATTTGTGTCAGG 58.751 41.667 0.00 0.00 35.65 3.86
514 515 6.205464 ACAACTTGATACCAGATTTGTGTCAG 59.795 38.462 0.00 0.00 35.65 3.51
515 516 6.061441 ACAACTTGATACCAGATTTGTGTCA 58.939 36.000 0.00 0.00 32.87 3.58
516 517 6.560253 ACAACTTGATACCAGATTTGTGTC 57.440 37.500 0.00 0.00 0.00 3.67
517 518 6.959639 AACAACTTGATACCAGATTTGTGT 57.040 33.333 0.00 0.00 0.00 3.72
518 519 7.174946 AGGTAACAACTTGATACCAGATTTGTG 59.825 37.037 23.28 0.00 45.09 3.33
519 520 7.231467 AGGTAACAACTTGATACCAGATTTGT 58.769 34.615 23.28 5.07 45.09 2.83
520 521 7.687941 AGGTAACAACTTGATACCAGATTTG 57.312 36.000 23.28 0.00 45.09 2.32
521 522 9.449719 CTAAGGTAACAACTTGATACCAGATTT 57.550 33.333 23.28 14.33 45.09 2.17
522 523 7.553044 GCTAAGGTAACAACTTGATACCAGATT 59.447 37.037 23.28 14.58 45.09 2.40
523 524 7.048512 GCTAAGGTAACAACTTGATACCAGAT 58.951 38.462 23.28 14.45 45.09 2.90
524 525 6.403878 GCTAAGGTAACAACTTGATACCAGA 58.596 40.000 23.28 13.20 45.09 3.86
525 526 5.585047 GGCTAAGGTAACAACTTGATACCAG 59.415 44.000 23.28 16.18 45.09 4.00
526 527 5.013287 TGGCTAAGGTAACAACTTGATACCA 59.987 40.000 23.28 8.72 45.09 3.25
527 528 5.353400 GTGGCTAAGGTAACAACTTGATACC 59.647 44.000 16.82 16.82 43.60 2.73
528 529 5.935789 TGTGGCTAAGGTAACAACTTGATAC 59.064 40.000 0.00 0.00 41.41 2.24
529 530 6.116711 TGTGGCTAAGGTAACAACTTGATA 57.883 37.500 0.00 0.00 41.41 2.15
530 531 4.980573 TGTGGCTAAGGTAACAACTTGAT 58.019 39.130 0.00 0.00 41.41 2.57
531 532 4.425180 TGTGGCTAAGGTAACAACTTGA 57.575 40.909 0.00 0.00 41.41 3.02
532 533 4.578928 ACTTGTGGCTAAGGTAACAACTTG 59.421 41.667 6.94 0.00 41.41 3.16
533 534 4.578928 CACTTGTGGCTAAGGTAACAACTT 59.421 41.667 6.94 0.00 41.41 2.66
534 535 4.134563 CACTTGTGGCTAAGGTAACAACT 58.865 43.478 6.94 0.00 41.41 3.16
535 536 3.881089 ACACTTGTGGCTAAGGTAACAAC 59.119 43.478 5.72 0.00 41.41 3.32
536 537 3.880490 CACACTTGTGGCTAAGGTAACAA 59.120 43.478 5.72 0.00 42.10 2.83
537 538 3.472652 CACACTTGTGGCTAAGGTAACA 58.527 45.455 5.72 0.00 42.10 2.41
549 550 1.821753 TCCAAAACCACCACACTTGTG 59.178 47.619 2.13 2.13 45.23 3.33
550 551 2.223803 TCCAAAACCACCACACTTGT 57.776 45.000 0.00 0.00 0.00 3.16
551 552 4.927978 TTATCCAAAACCACCACACTTG 57.072 40.909 0.00 0.00 0.00 3.16
552 553 7.289084 AGTTATTTATCCAAAACCACCACACTT 59.711 33.333 0.00 0.00 0.00 3.16
553 554 6.780522 AGTTATTTATCCAAAACCACCACACT 59.219 34.615 0.00 0.00 0.00 3.55
554 555 6.988522 AGTTATTTATCCAAAACCACCACAC 58.011 36.000 0.00 0.00 0.00 3.82
555 556 7.007723 AGAGTTATTTATCCAAAACCACCACA 58.992 34.615 0.00 0.00 0.00 4.17
556 557 7.393515 AGAGAGTTATTTATCCAAAACCACCAC 59.606 37.037 0.00 0.00 0.00 4.16
557 558 7.466804 AGAGAGTTATTTATCCAAAACCACCA 58.533 34.615 0.00 0.00 0.00 4.17
558 559 7.939784 AGAGAGTTATTTATCCAAAACCACC 57.060 36.000 0.00 0.00 0.00 4.61
593 594 9.143631 GTGCTCTCTTTATTTGTGCATATTTTT 57.856 29.630 0.00 0.00 33.76 1.94
594 595 8.526147 AGTGCTCTCTTTATTTGTGCATATTTT 58.474 29.630 0.00 0.00 33.76 1.82
595 596 8.059798 AGTGCTCTCTTTATTTGTGCATATTT 57.940 30.769 0.00 0.00 33.76 1.40
596 597 7.636150 AGTGCTCTCTTTATTTGTGCATATT 57.364 32.000 0.00 0.00 33.76 1.28
597 598 7.636150 AAGTGCTCTCTTTATTTGTGCATAT 57.364 32.000 0.00 0.00 33.76 1.78
598 599 7.040478 ACAAAGTGCTCTCTTTATTTGTGCATA 60.040 33.333 0.00 0.00 38.89 3.14
599 600 5.972107 AAGTGCTCTCTTTATTTGTGCAT 57.028 34.783 0.00 0.00 33.76 3.96
600 601 5.067674 ACAAAGTGCTCTCTTTATTTGTGCA 59.932 36.000 0.71 0.00 38.89 4.57
601 602 5.523369 ACAAAGTGCTCTCTTTATTTGTGC 58.477 37.500 0.71 0.00 38.89 4.57
602 603 7.865707 AGTACAAAGTGCTCTCTTTATTTGTG 58.134 34.615 10.46 0.00 40.14 3.33
603 604 8.989980 GTAGTACAAAGTGCTCTCTTTATTTGT 58.010 33.333 6.39 6.39 41.97 2.83
604 605 9.209175 AGTAGTACAAAGTGCTCTCTTTATTTG 57.791 33.333 2.52 0.00 36.12 2.32
605 606 9.780186 AAGTAGTACAAAGTGCTCTCTTTATTT 57.220 29.630 2.52 0.00 36.12 1.40
606 607 9.780186 AAAGTAGTACAAAGTGCTCTCTTTATT 57.220 29.630 2.52 0.00 34.29 1.40
607 608 9.780186 AAAAGTAGTACAAAGTGCTCTCTTTAT 57.220 29.630 2.52 0.00 34.60 1.40
608 609 9.609346 AAAAAGTAGTACAAAGTGCTCTCTTTA 57.391 29.630 2.52 0.00 34.60 1.85
609 610 8.398665 CAAAAAGTAGTACAAAGTGCTCTCTTT 58.601 33.333 2.52 10.13 35.82 2.52
610 611 7.012421 CCAAAAAGTAGTACAAAGTGCTCTCTT 59.988 37.037 2.52 0.00 30.04 2.85
611 612 6.483640 CCAAAAAGTAGTACAAAGTGCTCTCT 59.516 38.462 2.52 0.00 30.04 3.10
612 613 6.482308 TCCAAAAAGTAGTACAAAGTGCTCTC 59.518 38.462 2.52 0.00 30.04 3.20
613 614 6.260271 GTCCAAAAAGTAGTACAAAGTGCTCT 59.740 38.462 2.52 0.00 30.04 4.09
614 615 6.260271 AGTCCAAAAAGTAGTACAAAGTGCTC 59.740 38.462 2.52 0.00 30.04 4.26
615 616 6.120220 AGTCCAAAAAGTAGTACAAAGTGCT 58.880 36.000 2.52 0.00 32.46 4.40
616 617 6.373186 AGTCCAAAAAGTAGTACAAAGTGC 57.627 37.500 2.52 0.00 0.00 4.40
632 633 9.998106 GAGCCTACAAAAGATATATAGTCCAAA 57.002 33.333 0.00 0.00 0.00 3.28
633 634 8.304596 CGAGCCTACAAAAGATATATAGTCCAA 58.695 37.037 0.00 0.00 0.00 3.53
634 635 7.577046 GCGAGCCTACAAAAGATATATAGTCCA 60.577 40.741 0.00 0.00 0.00 4.02
635 636 6.752815 GCGAGCCTACAAAAGATATATAGTCC 59.247 42.308 0.00 0.00 0.00 3.85
636 637 7.273815 GTGCGAGCCTACAAAAGATATATAGTC 59.726 40.741 0.00 0.00 0.00 2.59
637 638 7.039644 AGTGCGAGCCTACAAAAGATATATAGT 60.040 37.037 0.00 0.00 0.00 2.12
638 639 7.316640 AGTGCGAGCCTACAAAAGATATATAG 58.683 38.462 0.00 0.00 0.00 1.31
639 640 7.228314 AGTGCGAGCCTACAAAAGATATATA 57.772 36.000 0.00 0.00 0.00 0.86
640 641 6.102897 AGTGCGAGCCTACAAAAGATATAT 57.897 37.500 0.00 0.00 0.00 0.86
641 642 5.531122 AGTGCGAGCCTACAAAAGATATA 57.469 39.130 0.00 0.00 0.00 0.86
642 643 4.408182 AGTGCGAGCCTACAAAAGATAT 57.592 40.909 0.00 0.00 0.00 1.63
643 644 3.887621 AGTGCGAGCCTACAAAAGATA 57.112 42.857 0.00 0.00 0.00 1.98
644 645 2.770164 AGTGCGAGCCTACAAAAGAT 57.230 45.000 0.00 0.00 0.00 2.40
645 646 2.224185 TGAAGTGCGAGCCTACAAAAGA 60.224 45.455 0.00 0.00 0.00 2.52
646 647 2.143122 TGAAGTGCGAGCCTACAAAAG 58.857 47.619 0.00 0.00 0.00 2.27
647 648 2.248280 TGAAGTGCGAGCCTACAAAA 57.752 45.000 0.00 0.00 0.00 2.44
648 649 2.346803 GATGAAGTGCGAGCCTACAAA 58.653 47.619 0.00 0.00 0.00 2.83
649 650 1.405526 GGATGAAGTGCGAGCCTACAA 60.406 52.381 0.00 0.00 0.00 2.41
650 651 0.175760 GGATGAAGTGCGAGCCTACA 59.824 55.000 0.00 0.00 0.00 2.74
651 652 0.530870 GGGATGAAGTGCGAGCCTAC 60.531 60.000 0.00 0.00 0.00 3.18
652 653 0.975556 TGGGATGAAGTGCGAGCCTA 60.976 55.000 0.00 0.00 0.00 3.93
653 654 2.293318 TGGGATGAAGTGCGAGCCT 61.293 57.895 0.00 0.00 0.00 4.58
654 655 2.109126 GTGGGATGAAGTGCGAGCC 61.109 63.158 0.00 0.00 0.00 4.70
655 656 0.955428 TTGTGGGATGAAGTGCGAGC 60.955 55.000 0.00 0.00 0.00 5.03
656 657 1.742761 ATTGTGGGATGAAGTGCGAG 58.257 50.000 0.00 0.00 0.00 5.03
657 658 3.558931 ATATTGTGGGATGAAGTGCGA 57.441 42.857 0.00 0.00 0.00 5.10
658 659 4.380531 AGTATATTGTGGGATGAAGTGCG 58.619 43.478 0.00 0.00 0.00 5.34
659 660 9.102757 CATATAGTATATTGTGGGATGAAGTGC 57.897 37.037 0.00 0.00 0.00 4.40
660 661 9.102757 GCATATAGTATATTGTGGGATGAAGTG 57.897 37.037 0.00 0.00 0.00 3.16
661 662 9.051259 AGCATATAGTATATTGTGGGATGAAGT 57.949 33.333 0.00 0.00 0.00 3.01
664 665 9.715119 AGTAGCATATAGTATATTGTGGGATGA 57.285 33.333 0.00 0.00 0.00 2.92
693 694 9.767684 CGTGCATAATGTATTTAGTTTGAGAAA 57.232 29.630 0.00 0.00 0.00 2.52
694 695 8.941977 ACGTGCATAATGTATTTAGTTTGAGAA 58.058 29.630 0.00 0.00 0.00 2.87
695 696 8.387354 CACGTGCATAATGTATTTAGTTTGAGA 58.613 33.333 0.82 0.00 0.00 3.27
696 697 8.387354 TCACGTGCATAATGTATTTAGTTTGAG 58.613 33.333 11.67 0.00 0.00 3.02
697 698 8.257830 TCACGTGCATAATGTATTTAGTTTGA 57.742 30.769 11.67 0.00 0.00 2.69
698 699 7.639850 CCTCACGTGCATAATGTATTTAGTTTG 59.360 37.037 11.67 0.00 0.00 2.93
699 700 7.335924 ACCTCACGTGCATAATGTATTTAGTTT 59.664 33.333 11.67 0.00 0.00 2.66
700 701 6.821665 ACCTCACGTGCATAATGTATTTAGTT 59.178 34.615 11.67 0.00 0.00 2.24
701 702 6.346096 ACCTCACGTGCATAATGTATTTAGT 58.654 36.000 11.67 0.00 0.00 2.24
702 703 6.844696 ACCTCACGTGCATAATGTATTTAG 57.155 37.500 11.67 0.00 0.00 1.85
703 704 8.719560 TTAACCTCACGTGCATAATGTATTTA 57.280 30.769 11.67 0.00 0.00 1.40
704 705 7.618502 TTAACCTCACGTGCATAATGTATTT 57.381 32.000 11.67 0.00 0.00 1.40
705 706 7.307160 CGATTAACCTCACGTGCATAATGTATT 60.307 37.037 11.67 0.00 0.00 1.89
706 707 6.145534 CGATTAACCTCACGTGCATAATGTAT 59.854 38.462 11.67 0.00 0.00 2.29
707 708 5.460748 CGATTAACCTCACGTGCATAATGTA 59.539 40.000 11.67 0.00 0.00 2.29
708 709 4.270084 CGATTAACCTCACGTGCATAATGT 59.730 41.667 11.67 0.00 0.00 2.71
709 710 4.506288 TCGATTAACCTCACGTGCATAATG 59.494 41.667 11.67 7.70 0.00 1.90
710 711 4.689071 TCGATTAACCTCACGTGCATAAT 58.311 39.130 11.67 11.82 0.00 1.28
754 755 7.719871 AGTACCCTATAATAGTAGCATGGTG 57.280 40.000 7.89 0.00 0.00 4.17
793 813 2.738743 AGGCGGATGGAAATGTTCAAT 58.261 42.857 0.00 0.00 0.00 2.57
843 1913 6.612306 GGCAAAAGTTTTGATCTATCTTCGT 58.388 36.000 28.36 0.00 0.00 3.85
850 1920 5.523438 AAACCGGCAAAAGTTTTGATCTA 57.477 34.783 28.36 0.00 32.36 1.98
883 1953 2.029970 CGCAATTGCATTGATTCTTGGC 59.970 45.455 28.77 0.00 42.83 4.52
919 1989 2.290367 TGAACACTGCACTCCGAAAATG 59.710 45.455 0.00 0.00 0.00 2.32
930 2000 0.392706 AGACCGTGATGAACACTGCA 59.607 50.000 0.00 0.00 46.24 4.41
944 2014 4.324267 ACCTCTGGTTAATCAAAAGACCG 58.676 43.478 0.00 0.00 34.90 4.79
1037 2108 3.947841 CAACCACCCACACGCACG 61.948 66.667 0.00 0.00 0.00 5.34
1047 2118 4.643387 AGGAGCACCGCAACCACC 62.643 66.667 0.00 0.00 41.83 4.61
1161 2232 4.421479 CAAGGGAGCGCGACGAGT 62.421 66.667 12.10 0.00 0.00 4.18
1350 3605 3.587933 TTGTTGGTTGACGCCGCC 61.588 61.111 0.00 0.00 0.00 6.13
1378 3633 2.047179 GGACTCCCCGAAGTGCAC 60.047 66.667 9.40 9.40 37.53 4.57
1464 3719 1.403687 AAGGATGCTCGGAGTAGGCC 61.404 60.000 6.90 8.10 0.00 5.19
1469 3724 0.324738 TCAGGAAGGATGCTCGGAGT 60.325 55.000 6.90 0.00 0.00 3.85
1504 3759 9.862371 GGAGTAATCTATTACCTGTACATCATG 57.138 37.037 8.83 0.00 42.71 3.07
1506 3761 9.656323 AAGGAGTAATCTATTACCTGTACATCA 57.344 33.333 8.83 0.00 42.71 3.07
1508 3763 9.091220 GGAAGGAGTAATCTATTACCTGTACAT 57.909 37.037 8.83 0.00 42.71 2.29
1509 3764 8.063153 TGGAAGGAGTAATCTATTACCTGTACA 58.937 37.037 8.83 0.00 42.71 2.90
1510 3765 8.474710 TGGAAGGAGTAATCTATTACCTGTAC 57.525 38.462 8.83 0.00 42.71 2.90
1511 3766 9.670442 AATGGAAGGAGTAATCTATTACCTGTA 57.330 33.333 8.83 0.00 42.71 2.74
1512 3767 8.568617 AATGGAAGGAGTAATCTATTACCTGT 57.431 34.615 8.83 0.00 42.71 4.00
1515 3770 7.974504 TGGAATGGAAGGAGTAATCTATTACC 58.025 38.462 8.83 2.30 42.71 2.85
1582 3842 9.033481 TGTTTTGAAGAAAATGTCATGTGAATC 57.967 29.630 0.00 0.00 33.63 2.52
1585 3845 7.816513 TGTTGTTTTGAAGAAAATGTCATGTGA 59.183 29.630 0.00 0.00 33.63 3.58
1589 3849 8.819974 GTCATGTTGTTTTGAAGAAAATGTCAT 58.180 29.630 0.00 0.00 32.68 3.06
1598 3858 7.156876 AGAAACTGTCATGTTGTTTTGAAGA 57.843 32.000 12.09 0.00 34.55 2.87
1599 3859 7.816945 AAGAAACTGTCATGTTGTTTTGAAG 57.183 32.000 12.09 0.00 34.55 3.02
1600 3860 8.600449 AAAAGAAACTGTCATGTTGTTTTGAA 57.400 26.923 12.09 0.00 34.55 2.69
1601 3861 7.869937 TGAAAAGAAACTGTCATGTTGTTTTGA 59.130 29.630 5.84 0.00 34.55 2.69
1602 3862 8.016497 TGAAAAGAAACTGTCATGTTGTTTTG 57.984 30.769 5.84 0.00 34.55 2.44
1603 3863 8.087750 TCTGAAAAGAAACTGTCATGTTGTTTT 58.912 29.630 12.09 7.42 34.55 2.43
1604 3864 7.601856 TCTGAAAAGAAACTGTCATGTTGTTT 58.398 30.769 11.14 11.14 36.73 2.83
1612 3872 5.817816 GTCTTCCTCTGAAAAGAAACTGTCA 59.182 40.000 4.31 0.00 33.53 3.58
1613 3873 5.237561 GGTCTTCCTCTGAAAAGAAACTGTC 59.762 44.000 4.31 0.00 33.53 3.51
1666 4045 2.159043 CCCTGCTCACTCATATTGTCGT 60.159 50.000 0.00 0.00 0.00 4.34
1667 4046 2.101415 TCCCTGCTCACTCATATTGTCG 59.899 50.000 0.00 0.00 0.00 4.35
1675 4054 0.701147 TCTCTCTCCCTGCTCACTCA 59.299 55.000 0.00 0.00 0.00 3.41
1681 4060 0.325484 AGCATGTCTCTCTCCCTGCT 60.325 55.000 0.00 0.00 35.26 4.24
1732 4111 4.047142 GCAAGAGAAAGAAAAGGTTGCTG 58.953 43.478 0.00 0.00 36.68 4.41
1734 4113 3.798878 GTGCAAGAGAAAGAAAAGGTTGC 59.201 43.478 0.00 0.00 39.38 4.17
1771 4150 2.390599 CCCAGACCACAATGCGTCG 61.391 63.158 0.00 0.00 34.10 5.12
1777 4156 0.991920 ATCCGAACCCAGACCACAAT 59.008 50.000 0.00 0.00 0.00 2.71
1780 4159 1.829222 TCTTATCCGAACCCAGACCAC 59.171 52.381 0.00 0.00 0.00 4.16
1792 4171 4.094887 CCACAATGACAAACCTCTTATCCG 59.905 45.833 0.00 0.00 0.00 4.18
1810 4189 4.469657 ACTCTAAGCATTGGAAACCACAA 58.530 39.130 0.00 0.00 34.26 3.33
1813 4192 6.313519 AGATACTCTAAGCATTGGAAACCA 57.686 37.500 0.00 0.00 34.26 3.67
1828 4207 3.158676 GGGCTCCGATTGTAGATACTCT 58.841 50.000 0.00 0.00 0.00 3.24
1832 4211 3.238788 TGAGGGCTCCGATTGTAGATA 57.761 47.619 0.00 0.00 0.00 1.98
1841 4220 0.178987 GGAGAGTATGAGGGCTCCGA 60.179 60.000 0.00 0.00 37.75 4.55
1847 4226 2.196595 TGTTTGGGGAGAGTATGAGGG 58.803 52.381 0.00 0.00 0.00 4.30
1855 4234 1.739067 GTTCGGATGTTTGGGGAGAG 58.261 55.000 0.00 0.00 0.00 3.20
1861 4240 1.463444 GTTCTCCGTTCGGATGTTTGG 59.537 52.381 14.34 2.33 33.34 3.28
1892 4271 0.408309 TTCCTTCTCTCCTGTCCGGA 59.592 55.000 0.00 0.00 40.30 5.14
1934 4313 0.398696 ACACGCCCATACAAAGTGGA 59.601 50.000 0.00 0.00 39.12 4.02
1988 4367 8.081633 CCAGACATCTCTGTATCTTCTTCATAC 58.918 40.741 0.00 0.00 42.36 2.39
2005 4384 2.267006 CGCACTGCCCAGACATCT 59.733 61.111 1.69 0.00 0.00 2.90
2085 4464 2.687297 TGATGGGGATGAAGAGAGAGG 58.313 52.381 0.00 0.00 0.00 3.69
2137 4522 2.682155 TTCCTTGCAAAACAACCACC 57.318 45.000 0.00 0.00 33.68 4.61
2188 4573 2.223688 CCCTCAAATTGTTGTGAACGCA 60.224 45.455 0.00 0.00 36.07 5.24
2198 4583 2.568509 CAAATCTGGCCCCTCAAATTGT 59.431 45.455 0.00 0.00 0.00 2.71
2199 4584 2.568509 ACAAATCTGGCCCCTCAAATTG 59.431 45.455 0.00 0.00 0.00 2.32
2211 4596 3.056393 ACAACCATGATGCACAAATCTGG 60.056 43.478 0.00 0.00 34.07 3.86
2269 4654 1.429299 TCTCTCTCACCCCTGTTCTCA 59.571 52.381 0.00 0.00 0.00 3.27
2322 4717 0.635731 GTCTCGAATCGCAACGACTG 59.364 55.000 0.00 0.00 39.18 3.51
2336 4731 5.570262 TGTTTTAACAGATTGTCGTCTCG 57.430 39.130 0.00 0.00 34.30 4.04
2350 4745 8.496751 GTTCTCTACCATCTCAACTGTTTTAAC 58.503 37.037 0.00 0.00 0.00 2.01
2390 4785 7.406104 AGAATACCCTGCATTTTTCTCTAGTT 58.594 34.615 0.00 0.00 0.00 2.24
2397 4792 6.118852 AGAGAGAGAATACCCTGCATTTTTC 58.881 40.000 0.00 0.00 0.00 2.29
2430 5748 4.047822 CGAGATCTGCTGGATTTGACTAC 58.952 47.826 0.00 0.00 34.33 2.73
2464 5782 1.065636 GGTACCAAGGCTACCTGTTCC 60.066 57.143 7.15 0.00 32.13 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.