>input_sequence_78606
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----------------------------------------------------------------------ATGGGGCAGC
CCGATCAGGCAAGGCCGCCGGGAAGCGCGTGCGTGTGGGTGGTTGCGGTGCTCCTCCTCCTCGCCGTGTTCGCCGGAGGC
GGGTGCCTGGTGCTCTACGTGACGCTGCCGCCGGCCGAGGTGCCGCAATGGCTTCCCATTGCCGGACTCGCACTCGTCGC
GCTCCCTTGGGCGTTCTGGATCGCCACGTGCGCCTACAGTTGCTGCTGCTCGCGTTCGTCGCCTCCGGCTCAGGCGGCGG
GGGCCGTGGAGCGGCAGCCTTTGAGGTCGGCCGCGGTAGTACCGCTGCCGAGCAGCACGAACATCAAGAGCGCGCTTA--
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--------------------------------------------------------------GCAAGAAGCACAGGCGAT
CTCCGGCGGCGTCAACCAACAACGCGTGGCGGGTGCACTTCGGGGAGTCCATCGTTCTCGGAGACGAGGAGAAGGACGAT
ACCTCGTCGGTGAATTCGCACGAGAGCGAGGCGCCGCTGGCCTACTCCGAGCATCCTTCCTGA-----------------
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>chr5D_1_TraesCS5D01G125800
CACGCGCACGCACACATCAAGCTGTCACGGTCGTCGACATCCCGCCGTGCCGAGCTCGCCTGCCCGTGCGCCTCCAGCCC
GGCTCTCGGCGATGGGCGCCGCACCTCCTCCTGCCAAGCAACTATGGCGGTGCATCCCGGGTGCGCGCATACGAGCTCTA
CGGCGCACACGGCGGCGCTCCAGGGAGTGACGGCATGGTGGAATCCCATGCGGTCCGTGAGCATCGACGGTGGCGGCGGC
TGCGACGAGCAGCCGAAGTCTTCGGGCACCGCCCGCAACCTCCTTGTTGAAATGCCAATGGGAGAAAAGAGGAAGAAATA
AAAAGAAAAAGGTGAAATGAAAAAAACACTTGAGTCATTGACAAACGGGACACTCTTCCAACTCAGCATATTGTCGCACG
CCAAATCAGCCTGACAGGCGGGCCCTATTGGTCAGTTTCGCTGTTTTCTCGACCAAATCCGAGCATCAGTGCTCCGCGTT
ATAGATTAGGCACAATTTTGGTGGTTTTTGTGCCCTGACACAAATCTGGTATCAAGTTGTTACCTTAGCCACAAGTGTGG
TGGTTTTGGATAAATAACTCTCTTTTTTTTAAAAAAAATATGCACAAATAAAGAGAGCACTTTGTACTACTTTTTGGACT
ATATATCTTTTGTAGGCTCGCACTTCATCCCACAATATACTATATGCTACTAATTTCTCAAACTAAATACATTATGCACG
TGAGGTTAATCGATCCCATATATTTCATGCAATTCACCATGCTACTATTATAGGGTA-------------------CTTT
CAGTTACCATGGATTGAACATT----------------------------------------------------------
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--------------------------------TCCATCCGCCTTGCCGACGCGCGCCACAAAAGAACGAACAACGAAGAT
AGATCAAAACTTTTGCCGGTTTACAATTAACAGCCAAGAATCAATGCAATTGCGAAGATCGATCGCATCATTTTCGGAGT
GCAGTGTTCATCACGGTCTTTTGATTAACCAGAGG-TCTTGGAGGTCTGGTGCTGAGGGTCGATTGATTGATGGGGCAGC
CCGATCAGGCAAGGCCGCCGGGAAGCGCGTGCGTGTGGGTGGTTGCGGTGCTCCTCCTCCTCGCCGTGTTCGCCGGAGGC
GGGTGCCTGGTGCTCTACGTGACGCTGCCGCCGGCCGAGGTGCCGCAATGGCTTCCCATTGCCGGACTCGCACTCGTCGC
GCTCCCTTGGGCGTTCTGGATCGCCACGTGCGCCTACAGTTGCTGCTGCTCGCGTTCGTCGCCTCCGGCTCAGGCGGCGG
GGGCCGTGGAGCGGCAGCCTTTGAGGTCGGCCGCGGTAGTACCGCTGCCGAGCAGCACGAACATCAAGAGCGCGCTTA--
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--------------------------------------------------------------GCAAGAAGCACAGGCGAT
CTCCGGCGGCGTCAACCAACAACGCGTGGCGGGTGCACTTCGGGGAGTCCATCGTTCTCGGAGACGAGGAGAAGGACGAT
ACCTCGTCGGTGAATTCGCACGAGAGCGAGGCGCCGCTGGCCTACTCCGAGCATCCTTCCTGATTTAGATATGTACTACA
TGATGTACAG----GTAATAGATTACTCCTTCCATTCCAAAATACAGGTAATACAAATTGGACCGC-GAATAGTTTTTTT
AGATTCACATGACATTTTCTTCAAAACAACATGACAGTTTCTT------------------TTCAGAGGAAGACCTTTT-
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--------------------TCCTATATAAGTATGATTCATTGTACGACAATATGAGTGAGCAGGGAGAGAGACATGCTT
CTCACCATTGACCTCTCCCTTGCAATTGCTCAGCAACCTTTTCTTTCTCTTGCACATTTTTTCGAGCGACGACGCATTGT
GGTCTGGGTTCGGATAAGAGGTTTGTCATTGTGGTTTCCAATGCTTAGAGTATCTACAATCGGAGCCCTCATACTCTCCC
CAAACATCCGAACGGAGAACCCAACCACTGTCCGGACAGGAGAGAAGGAAAAAAAGTCGCCCAACCGGACCATCCACTTT
GTATGGGCGTGTTCGGGCAGTACACAAATTACTATACCCAACCCATGTATGAAGAAGATACAGAGATGTCTGGGCAGTGC
GTCACATAGGATGTGGCCCACCGCGGACCACCTTTTCTCGTTCTTTATTCTTTCTTTTCTCCCC-----CTCTCTCTTCA
TCCCCATCAATCACATGCATGTGACG-CACAAATTGGGATGGGTGGTTGTTTTGCAAGGAATGTAGAGGGTCAAAGCGGA
CATCCTATCGGATGCGTTCACAACAATTTGAGGGGCCAGATTTGTGCATCATGGTTGTAGATGCTCTTACCGAGCTTAGA
GAGGAGGCCGATCTGAGAACAGGGG---------TGAGAGAGAGAATGCACTAAA-TGAATATCCAAGGGCCCAGGCAGT
CGTTGCGATTCGAGACGACAATCTGTTAAAACAGTTGAGATGGTAGAGAACAAGTATATTAACGAACTAGAGAAAAATGC
AGGGTATTCTCTCTCTCC--------------------------------------------------------------
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-------------------------------------------------------------TCTTTGGTAGTCAAATCCA
GCAGATCTCGGGTAGGGGTCCGGAACAGGTAGCCTTGGTACCATAG
>chr5B_707
ATAGCA--------------------------------------------------------------------------
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-----------------------------------------------------------------------TTATGCACG
TGAGGTTAATCGATCCCATATATTTCATGCAATTGACCATGCTACTATTATAGGGCATCCTCAAGTGACTCCCTGCCTTT
CAGTTACCATGGGTTGAACATTGAGCTCTTTTACAGTACCCCTAAATGATTATGAGCCCTCCATTTCTGTTAATCCAATG
GATGATCTTAATTGGTACTCCAACAAGTGTACGAGAGAGTACCAGCTAAAAAAGCAAGGGAGTACCTCGAGCTTAGGGGT
AAAAATGTAATCTAGAAGCAAATTGTTTAATTTATTATTATCGTCTAAGTATGGCTGCTACATAATAACGTTTCAACTTG
AACGTGATTAATTATATTTGGAACCATAATTCTTCACTGGGATAGACGTCGGCAGAGGCGGCCCCGTGGCAGAGGCGGCC
ATCAAGATATGGTCGCCAAGCCAAGAACTTGTTAGAGGCGTCGACCGGGTATGGTCACCAACCAGGGCCACGCTGAAGCA
AGAGGACCAGGGGGAGGCAAGATCACCAGGTCGGTCGGAGCTCCATCATGCGGGCGTTGTCTAAATACTGGACGTTCATA
TGTGCGGTTGATCTGGCTGATAAGGTTCAACATGAAAGGACGGGGATCTGGCTGCTTTTATAGAGGCAGGCTTGGTATCT
GGCGGTGGTGATGAACGAGTTGCTTGCAATCGATCCCTCTTACCATAACAATGATATTTTTTGTTTTATTTGCCTGTGTA
AATGAGCGATCTTGTATGATTTTCCAGAATTTGTAGCCAAGGTCTATTAGATTGATATACATCCCGTGCAATGAAAATCA
GATCCGTCCACTGATTGATAGAGTTTTTTATCCTTGTTTGATTTGAGAGATCAATCTGCGCTTGTTATCTATTCATTGGC
CGTGCTTTGCGAAAGAGAGCAGGCGGCAATGGCGCCGTCGTCAACACCACGGTGCAGCGAGGTAGGAAGCCCTGCACGAG
GGATTACATTGGCGGCGGCACGCGTAACAGATAGGCCGATAAACACTCTCGTTGCCAAACAGTTTTTATGAGATCTAGTC
ACAAAGAAATCAGTTAAGACCATGAGAAAAATGACTAGACTACCCTTTGAAGTGGACGGTCGGATTTTAGTGGTACTCCA
TCCCTTCTTAGGAGAGTACCAGGGTACCGTTTTCCAACCGCATTGGCGACGCGCGCCACAAAAGAACGAACACCGAAGAC
AGATCAAAACTTTTGCCGGTTTACAATTAACAACCAAGAATCAATGCAATTGCGAAGATCGATCGCATGATTTTCGGAGC
GCAGTGTTCATCATGGTCTTTTGATTAACCAGAGGTTCTTGGAGGTCTGGTGCTGAGGGTCGATTGATCGATGGGGCAGC
CCGATCAGGCAAGGCCGCCGGGAGCGT-GTGCGTGTGTGTGGTTGCGGTGCTCCTCCTCCTCGCCGTGCTCGCCGGAGGC
GGGTGCCTGGTGCTCTACGTGACGCTGCCGCCGGCCGAGGTGCCGCAATTGCTTCCCATTGCCGGACTCGCGCTCGTCGC
GCTCCCT-GGGCGTTCTGGATCGCCACGTGCGCCTACAGTTGCTGCTGCTCGCGTTCGTCGCCTCCGGCTCAGGCGGCGG
GGGCCGTGGAGCGGCAGCCTTCCAGGTCGGCCGCGGTGGTACCGCTGCCGAGCAGCACGAACATCAAGAGCGCGCTTAGA
GCATCTCCAGCCATTGAGCCCCTCAGGAGGCTTTTTGTTCGCCGCTTGGGGGGCTGCCAGCGGAAATTTTGACCTGGGGG
CGAAAATGTTTTCAGCCGTGTTCACCCCCAAACCGTGCCCAGACCGCGCCCGCCCCAGGCCACGGCCGGCCCGGCCTCGC
CGCCGAGCTCGCTCCTCCGCATGAGGGTTCGCTGGCCACCTTCATCCCTGTGCGTACAAGTACTCGTGCCCAGCTAGCTA
GCTAGCAAAGCAGAGCCAATCGATTCGGCTGTGTGCGCGCTTGCTAGCTAGCTAGCTTGGCTCGTTTGACACAGGCGGCC
AGCCACACCTGCGGTGTCCACGCGAACGGCCGGTCACCTCGAGCATGCTCCGACCGCGCCTCTTCGTTCCTCCACCGCGC
GCCCTGCATCTTCGGCCCCAGCGTCGGCGCGCCCGCTTTGTCCTGCGCCTACATCGACCCCGACTCCGCGCAGGTCTGCA
CCGCCCCGCTCGGCCTCCGTTCCCGCACCTCGGCCGTCTTCGCACTGGCCCGGCCTCCGCCCGAGCCTGCCGTCTCACGC
GCCCGCGTCCGGCCCTGCTCCCGAGCCGGCTGCTGCTCCGTGGTTGGCAGGAGGCTCCGTCGACGCGCCCGCCTCATCCC
GGGCCGGCTGCGCCCCGGTCCTTCGTCGCCGGGTCCCCCGCACCTCCCGCTACCTGGCCCCGTGCCGCGTTGCATCGCAT
GCGGCCCCGCTCGTCCTCGCCCGAGCTTGCCCTGCCACTGGCTTGCCGGCCGCCTCCCCGGACGGCTACGAGGCGCTGGA
GAGGGATTCGGGGCCTCCTCGAGCACGCCGGACGCCGACCACGCCCACCCGAGCTGGACACCAGACTCCTCCAGCACCGC
TCCGCCCCGCGCCGATGTTCTCCGCGCTCGAGAGAGAGAGAGAGGCAGGCGAGAAGAAAGAGGAAAAGAGAGGAGAGAGG
TTGTGGGAGGCCGATAGTGGGCCAACCGCAAGAAAAAGGCGTCGCCGGCACGCCCATGTGCTTCCCAGGGGGCTGGGTTT
GGGGTGGTACTGCCGGCGTCAATTTTCTTTAAATCTGGCGAAAAGTGGGGCTTTGGGGATGCGAGTGGGGGAATATTTTA
GTGCCGACGCTCAAAAAGTGACCGTGGGGGATGTCTTGGGGGGCCGGCTGGAGATGCTCTTAGCAAGAAGCACAAGCGAT
CTCCAGCGGCGTCAACCAGCGACGCGCGGCGGATGCACTTCGGGGAGTCCATCATTCTCGGAGACGAGGAGAAGGACGAT
ACCTCGTCGGTGAATTCGCACGAGAGCGAGGCGCCGCTCGCCTGCTCCGAGCATCCTTCCTGATTTAGATATGTACAGGA
CGTACACCACACACGTAATAGATTACTCCTTCCATTCCAAAATACAGGTAATACAAAGTGGACCGCGGAATAGTTTCTTC
ATATCCACGTGACATTT-------AACAACACAACAGTTTCTTTGGAGAAATCCATTTTTCTTCAGAGGAAGACATTTTC
TTCTAACTGTCACCATTTAATCTCGCGCTGCAACTAAAATTGCCAGAAAAATGCATTCACTTGTCATCTCCCTCCCAGGG
ATCATTCACATGTTAGTATATCTGATATAAATACGGTTGATTGT--GACAATACGAGTGCGCAGGGAGAGAGACATGCTT
CTCACCATTGACCTCTCCCTTGCGATTGCTGATCAACCATTTCTTTCTCTTGGACAATTT--------------------
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>chr5B_1755
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----------------------------------------------------CACAATTTTTCAAGCGAGGACGCGTTCT
GGTCTGGGTTTGGATAAGAGGTTTTTTACTGGGGTTTCCAATGCTTGGAGCATCTACAACCGGAGTCCTCATATTCTCCT
CAAACATCCGAACGGAGAACCCAACCACTGCCCGGACATGAGAGAAGG-AAAAAAGTCGCCCAACCGGACCACACACTTT
GTATGGGCGTGTTCGAGCAGTACACAAATTACTATACCCAACCCATATATGAAGAAGATACAGGGATGTTCGGGTAGTGC
GCCACATAGGATGTGGCCCACCGCGGGCCACCTTTTCTCGTTCTTTATTCTTTCTTTTCTCCCACCTCTCTCTCTCTTCA
TCTCCACCAATCACATGTGAC---CG-AACAAATTGGGATGTGTGGTTGTTTTGCAAGGAATGTAAAGGGTCAAAGTGGA
CA-CCTATCAGACGCTTTCACAGAAATTTGAGGGGTCAGATTTGTGCATCGTGGTTGTAGATGCTCTTACCGAGCTTAGA
GAGAAGGCCGATCCGAGAAGAGGGGGGAGGTCGATGAGAGAGAGAATGCACTAAAATGAATATCCAAGGCCCCAAGTAGT
CGTTGCGATATGATGCAACAATCTCTTAAAACAGTTGAGATGGTAGAGAACAAGCATATTAATGGACCAGAAAAAACGCA
GGGT----------------------------------------------------------------------------
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>chr5A_1936
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-------------------------------------------------------------------------CCACTTT
GTACGGGCGTGTTCGGGCAGTACACACATTTCTATACCCAACCCATATATGAAGAAGATACAGGGATGTCTGGCCCGTGC
GCCACATAGGATGTGACCCACCGCGGACCACCTTTTCTTGTTCTTTATTCTTTCTTTTCTCCCTC--CTCTCTCTCTTCA
TCTTCACCAATCACATGCATGTGACGACACAAATTGAGATGTGTGGTTGTTTTGCAAGGAATGTAGAGGGTCAAAGCGGA
CA-CCTATCGGACGCGTTCACAGTAATTTTAGGGGTCAGATTTGTGCATCATGGTTGTAGATGCTCTTACCGATCTTAGG
GAGGAGGCCGATCCAAGAACATGGG---------TGAGAGAGAGAATACACTAAAATGGATATCCAAGGGCCCAGGAAGT
CGCTACGATTTGATGGAACAATCTCTTAAACTAGTTGAGAAGGTAGAGAACAAGCATACTAACGGACTAGACACAAATGC
ATGGTATTCTCTCTCTCCTCTTTGATGAGGACATCAATACCATTGTTACACCCACAGCCCCTACTGCTATACATACTGGA
CCAATTACTAGAGCTCGCGTACGCCAATTGAATTACCAGGTACTTTCGTTTCTTGGTAATGATTCTAATGTTCATGAGAA
TATGATGCTGCCTAAATTGGATACATTTGTTTTGCTTACTAATGAAGGGCCTGACATGGATAAGAGGGATGAACACTGGA
GCAAGACCAAGCATGGAGATGATGGCATGCGCAAGGGGATCAAGAACGGAGTTACAGGTGATGATTTCAGGACTTCGAAG
CCACCATAAGGAGTGCATGAAGCCTTGGACAAAATATACAAGATGCCACTTCATAAATTTCATCCAGAGACTATTCTAGG
TGCTGCGTCACCTTATTATTGGGCCAGGCCCATGTATTTTCGAAATACTTAAGTATAGGCTGTTTTTAGAGTTCGTATGT
GTGGGAAACAAGAGTTAGGGTTGGTTTCGGACCCCTCCTCCAAGGGCCACGAAATTTCCCCATCTTCCTCCATATATACA
ACCCTTAGGGCGTCGTTTAGACTTTGGGTTTTGTTTAGATTAAAAGTTCGCCATAGCTGCAACTTCGCGTACTTCGTTTG
TGTCCAACGACCAGACCAAGACGTCACAGAACCCCACCTTCATTAATAAAGCTTTCCTATTTTATTCGCAATATCCAGAT
TGCAATCTTAGTTTCTTGCTTGTTCTTCGTTTGCTCGCAGGAAATAGACCCTCGTGGTCAAGTTGACCGTGCTCCGGCGT
GGTCAATAACCCTCGGAAGTTGGTTTAGTGATTGCTAAGGCGCGACGTCTTCACACGTTCGTAGTCGGATCGTCAAAGTT
GACTCCCACAGAAAACCATATCTATCTCATCGAAACATCAGGACACCTTCGCCCCTATCACTCTTTGATAGTCAAATCCA
GCAGATCTCGGGTAGGGGTCCAGAACAGGTAGCCTTGGTA------
>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----------------------------------S--------------------S------------------------
------------S-------------------------------------------------------------------
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------------------------------------S----S---S--------------------------S------S
--------------------------------S-----------------------------------S----------S
-------------S------------------------------------------------------S-----------
-----------------------SSSSS---------S------------------------------S-----------
-------------------------------------------------S---------------------S--------
-------S------------------------------------------------------------------------
---------------------SS--------------S------------------------------------------
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--------------------------------------------------------------------------S-----
----S-------------S-S-----S-----S--------------------S--------------------------
--------------------------------------S----S--------------------------------SSS-
S-SSSSS--S-----------------------------------------------S------------------S--S
-S--S---S--------SSSSSSS-------SS-----------------------------------------S-----
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----------------------SS------S--S-S--S-----SS-------S-----S--------------------
-----------------------S------S-S-----S-----------------S------S-----S-----S--S-
----------S-------------S-S-S--S--------------S---S--------S-----S-------S-----S
------------------------------S-------S---------S-----------------------S-------
----------------------------------------------S----------------S----------------
-S-------------------------------------------------------------S----------------
--S---S----------------------------------S--------------------------------------
--S---------S---------SS-----------S--------------------------------------------
-------------S--------------------------------------------------------------S---
----------S--SS-S-------S-----------------------------S---------S------S--------
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-------------------------------------------------------------------S------------
---------------------S------------------SSSSSS
>forward_438
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------------------CGGGCCCTATTGGTCAGTTT------------------------------------------
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>reverse_4220
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-----------------------------------------------------------TCGGAGCCCTCATACTCTCC-
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