Multiple sequence alignment - TraesCS5D01G122700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G122700 chr5D 100.000 3273 0 0 1 3273 177678050 177674778 0.000000e+00 6045.0
1 TraesCS5D01G122700 chr5D 91.736 121 10 0 3077 3197 138565551 138565671 5.620000e-38 169.0
2 TraesCS5D01G122700 chr5D 78.417 139 25 5 2869 3004 510874487 510874623 5.820000e-13 86.1
3 TraesCS5D01G122700 chr5B 94.980 2809 70 19 1 2793 192351179 192348426 0.000000e+00 4340.0
4 TraesCS5D01G122700 chr5B 89.231 130 13 1 3075 3204 386151873 386151745 9.400000e-36 161.0
5 TraesCS5D01G122700 chr5A 97.313 2047 28 12 542 2568 191091555 191093594 0.000000e+00 3450.0
6 TraesCS5D01G122700 chr5A 89.493 552 45 5 1 547 191080099 191080642 0.000000e+00 686.0
7 TraesCS5D01G122700 chr5A 89.474 133 12 2 3066 3197 459718896 459719027 2.020000e-37 167.0
8 TraesCS5D01G122700 chr4B 87.633 283 35 0 1994 2276 122565445 122565727 2.430000e-86 329.0
9 TraesCS5D01G122700 chr4B 92.308 65 5 0 3005 3069 9502297 9502233 3.480000e-15 93.5
10 TraesCS5D01G122700 chr4B 95.122 41 2 0 2945 2985 99040051 99040011 7.580000e-07 65.8
11 TraesCS5D01G122700 chr4A 93.333 120 8 0 3078 3197 187572227 187572346 9.330000e-41 178.0
12 TraesCS5D01G122700 chr3A 91.935 124 8 2 3076 3197 22891583 22891706 4.340000e-39 172.0
13 TraesCS5D01G122700 chr3A 93.162 117 8 0 3082 3198 486048281 486048165 4.340000e-39 172.0
14 TraesCS5D01G122700 chr3A 89.873 79 8 0 3005 3083 200671693 200671771 5.780000e-18 102.0
15 TraesCS5D01G122700 chr7B 91.803 122 10 0 3079 3200 516681640 516681519 1.560000e-38 171.0
16 TraesCS5D01G122700 chr7B 72.287 516 125 14 1259 1762 517310693 517311202 9.470000e-31 145.0
17 TraesCS5D01G122700 chr7B 87.302 63 8 0 2920 2982 558875036 558875098 4.530000e-09 73.1
18 TraesCS5D01G122700 chr7D 92.373 118 9 0 3080 3197 595978494 595978377 5.620000e-38 169.0
19 TraesCS5D01G122700 chr7D 72.407 540 127 18 1259 1784 488782781 488783312 5.660000e-33 152.0
20 TraesCS5D01G122700 chr7D 80.263 152 26 2 2857 3004 552926207 552926358 9.600000e-21 111.0
21 TraesCS5D01G122700 chr7A 72.963 540 124 19 1259 1784 556159695 556160226 5.620000e-38 169.0
22 TraesCS5D01G122700 chr2A 90.551 127 8 4 3082 3206 609453939 609453815 7.270000e-37 165.0
23 TraesCS5D01G122700 chr3D 92.308 78 6 0 3006 3083 558010914 558010837 9.600000e-21 111.0
24 TraesCS5D01G122700 chr1B 88.889 72 6 2 2934 3004 619212037 619212107 1.620000e-13 87.9
25 TraesCS5D01G122700 chr2D 100.000 34 0 0 2948 2981 620605349 620605382 2.730000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G122700 chr5D 177674778 177678050 3272 True 6045 6045 100.000 1 3273 1 chr5D.!!$R1 3272
1 TraesCS5D01G122700 chr5B 192348426 192351179 2753 True 4340 4340 94.980 1 2793 1 chr5B.!!$R1 2792
2 TraesCS5D01G122700 chr5A 191091555 191093594 2039 False 3450 3450 97.313 542 2568 1 chr5A.!!$F2 2026
3 TraesCS5D01G122700 chr5A 191080099 191080642 543 False 686 686 89.493 1 547 1 chr5A.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 255 0.451783 GGCCATTACAACAAGGAGCG 59.548 55.0 0.00 0.0 0.00 5.03 F
437 440 0.810031 ATCCATTCGAAACGCGGGAG 60.810 55.0 12.47 0.0 41.33 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 1225 0.188587 TCAGTCCAGTCCACTCCAGT 59.811 55.0 0.00 0.00 0.00 4.00 R
2365 2400 1.523154 GCTCCCAGCTCGATCGATCT 61.523 60.0 19.78 17.43 38.45 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.444700 CTACCACCGCCTTTCACCGT 62.445 60.000 0.00 0.00 0.00 4.83
31 32 1.804326 CCGCCTTTCACCGTCTACG 60.804 63.158 0.00 0.00 39.44 3.51
92 94 4.521256 AGGGTTGCTAATTTAACGCTGAAA 59.479 37.500 14.36 0.00 44.90 2.69
218 220 4.162131 TCAAGATGGTCTCGGAATGAATGA 59.838 41.667 0.00 0.00 0.00 2.57
234 236 3.689161 TGAATGAAGAACGTGGCCTTATG 59.311 43.478 3.32 0.00 0.00 1.90
253 255 0.451783 GGCCATTACAACAAGGAGCG 59.548 55.000 0.00 0.00 0.00 5.03
268 270 2.370849 AGGAGCGGGTGAAAAGTAAGAA 59.629 45.455 0.00 0.00 0.00 2.52
361 364 3.120546 CGACGTTTGACAAAGATGCTCAT 60.121 43.478 0.00 0.00 0.00 2.90
375 378 1.021390 GCTCATGAGGTGAACCGGTG 61.021 60.000 23.89 0.00 42.08 4.94
380 383 0.963962 TGAGGTGAACCGGTGTCTAC 59.036 55.000 8.52 4.96 42.08 2.59
408 411 0.947244 GCCGTTAGATGCTTGATGGG 59.053 55.000 0.00 0.00 0.00 4.00
437 440 0.810031 ATCCATTCGAAACGCGGGAG 60.810 55.000 12.47 0.00 41.33 4.30
644 660 2.435437 TCCATGGATGCGAGAAATCTGA 59.565 45.455 11.44 0.00 0.00 3.27
645 661 2.806818 CCATGGATGCGAGAAATCTGAG 59.193 50.000 5.56 0.00 0.00 3.35
735 751 1.689243 CGGATGGATGAGGTGCAGGA 61.689 60.000 0.00 0.00 0.00 3.86
745 761 2.892852 TGAGGTGCAGGAATTTTCTTGG 59.107 45.455 4.82 0.00 35.12 3.61
812 829 3.768757 TGCATTAAAAAGGGGGTGATGAG 59.231 43.478 0.00 0.00 0.00 2.90
1201 1224 8.350722 ACACGTACTAGTATAATTCACTGATGG 58.649 37.037 5.75 0.00 0.00 3.51
1202 1225 8.565416 CACGTACTAGTATAATTCACTGATGGA 58.435 37.037 5.75 0.00 0.00 3.41
1203 1226 8.566260 ACGTACTAGTATAATTCACTGATGGAC 58.434 37.037 5.75 0.00 0.00 4.02
1208 1231 7.060383 AGTATAATTCACTGATGGACTGGAG 57.940 40.000 0.00 0.00 0.00 3.86
1921 1944 3.497115 TGCAAGGACAGGGCCACA 61.497 61.111 6.18 0.00 0.00 4.17
2212 2235 0.666274 CGCAGCTCGGAAAGTACACA 60.666 55.000 0.00 0.00 33.78 3.72
2254 2277 0.609131 CCAAGGAGGGCATGTTCGTT 60.609 55.000 0.00 0.00 0.00 3.85
2326 2353 4.611366 CGTTCGTTACCAAAGCAGAAATTC 59.389 41.667 0.00 0.00 0.00 2.17
2346 2381 6.834168 ATTCAAGATGCATGCATGATGATA 57.166 33.333 36.73 24.80 36.70 2.15
2347 2382 5.622770 TCAAGATGCATGCATGATGATAC 57.377 39.130 36.73 20.03 36.70 2.24
2348 2383 5.313712 TCAAGATGCATGCATGATGATACT 58.686 37.500 36.73 21.91 36.70 2.12
2387 2422 2.733945 GATCGAGCTGGGAGCCTC 59.266 66.667 0.00 0.00 43.77 4.70
2618 2655 1.528161 GTTTGTTGGGTTCGTCGTAGG 59.472 52.381 0.00 0.00 0.00 3.18
2619 2656 0.600782 TTGTTGGGTTCGTCGTAGGC 60.601 55.000 0.00 0.00 0.00 3.93
2620 2657 1.291272 GTTGGGTTCGTCGTAGGCT 59.709 57.895 0.00 0.00 0.00 4.58
2621 2658 0.735287 GTTGGGTTCGTCGTAGGCTC 60.735 60.000 0.00 0.00 0.00 4.70
2622 2659 2.101770 GGGTTCGTCGTAGGCTCG 59.898 66.667 0.00 0.00 0.00 5.03
2623 2660 2.578981 GGTTCGTCGTAGGCTCGC 60.579 66.667 0.00 0.00 0.00 5.03
2624 2661 2.177531 GTTCGTCGTAGGCTCGCA 59.822 61.111 0.00 0.00 0.00 5.10
2625 2662 1.868251 GTTCGTCGTAGGCTCGCAG 60.868 63.158 0.00 0.00 0.00 5.18
2778 2815 4.468689 GGTGCAGCCCCGTCTACC 62.469 72.222 4.03 0.00 0.00 3.18
2793 2830 2.311688 CTACCGGACTGTGCCATCCC 62.312 65.000 9.46 0.00 0.00 3.85
2794 2831 3.716195 CCGGACTGTGCCATCCCA 61.716 66.667 0.00 0.00 0.00 4.37
2795 2832 2.436646 CGGACTGTGCCATCCCAC 60.437 66.667 0.00 0.00 36.28 4.61
2796 2833 2.436646 GGACTGTGCCATCCCACG 60.437 66.667 0.00 0.00 38.55 4.94
2797 2834 2.662596 GACTGTGCCATCCCACGA 59.337 61.111 0.00 0.00 38.55 4.35
2798 2835 1.221840 GACTGTGCCATCCCACGAT 59.778 57.895 0.00 0.00 38.55 3.73
2799 2836 0.811616 GACTGTGCCATCCCACGATC 60.812 60.000 0.00 0.00 38.55 3.69
2800 2837 1.884464 CTGTGCCATCCCACGATCG 60.884 63.158 14.88 14.88 38.55 3.69
2801 2838 2.296814 CTGTGCCATCCCACGATCGA 62.297 60.000 24.34 0.00 38.55 3.59
2802 2839 1.592669 GTGCCATCCCACGATCGAG 60.593 63.158 24.34 14.64 0.00 4.04
2803 2840 2.029666 GCCATCCCACGATCGAGG 59.970 66.667 24.34 23.56 0.00 4.63
2804 2841 2.737180 CCATCCCACGATCGAGGG 59.263 66.667 36.47 36.47 45.65 4.30
2805 2842 2.029666 CATCCCACGATCGAGGGC 59.970 66.667 37.10 0.00 44.24 5.19
2806 2843 2.443952 ATCCCACGATCGAGGGCA 60.444 61.111 37.10 27.52 44.24 5.36
2807 2844 1.838846 ATCCCACGATCGAGGGCAT 60.839 57.895 37.10 28.26 44.24 4.40
2808 2845 2.104572 ATCCCACGATCGAGGGCATG 62.105 60.000 37.10 19.50 44.24 4.06
2809 2846 2.969238 CCACGATCGAGGGCATGC 60.969 66.667 24.34 9.90 0.00 4.06
2810 2847 2.969238 CACGATCGAGGGCATGCC 60.969 66.667 29.47 29.47 0.00 4.40
2811 2848 3.157252 ACGATCGAGGGCATGCCT 61.157 61.111 34.70 21.29 36.10 4.75
2812 2849 2.356793 CGATCGAGGGCATGCCTC 60.357 66.667 34.70 26.37 36.10 4.70
2817 2854 4.783621 GAGGGCATGCCTCGCACA 62.784 66.667 34.70 0.00 43.04 4.57
2818 2855 4.790962 AGGGCATGCCTCGCACAG 62.791 66.667 34.70 0.00 43.04 3.66
2831 2868 1.944778 GCACAGCGGATTCCTATGC 59.055 57.895 0.30 1.80 0.00 3.14
2832 2869 1.510480 GCACAGCGGATTCCTATGCC 61.510 60.000 0.30 0.00 0.00 4.40
2833 2870 0.179048 CACAGCGGATTCCTATGCCA 60.179 55.000 0.30 0.00 0.00 4.92
2834 2871 0.179045 ACAGCGGATTCCTATGCCAC 60.179 55.000 0.30 0.00 0.00 5.01
2835 2872 1.069765 AGCGGATTCCTATGCCACG 59.930 57.895 0.30 0.00 0.00 4.94
2836 2873 1.961277 GCGGATTCCTATGCCACGG 60.961 63.158 0.30 0.00 0.00 4.94
2837 2874 1.301716 CGGATTCCTATGCCACGGG 60.302 63.158 0.30 0.00 0.00 5.28
2838 2875 1.754380 CGGATTCCTATGCCACGGGA 61.754 60.000 0.30 0.00 0.00 5.14
2839 2876 0.693049 GGATTCCTATGCCACGGGAT 59.307 55.000 0.00 0.00 0.00 3.85
2840 2877 1.339151 GGATTCCTATGCCACGGGATC 60.339 57.143 0.00 0.00 0.00 3.36
2841 2878 0.321671 ATTCCTATGCCACGGGATCG 59.678 55.000 0.00 0.00 43.02 3.69
2842 2879 2.357517 CCTATGCCACGGGATCGC 60.358 66.667 0.00 0.00 40.63 4.58
2843 2880 2.421314 CTATGCCACGGGATCGCA 59.579 61.111 10.70 2.52 40.63 5.10
2844 2881 1.956170 CTATGCCACGGGATCGCAC 60.956 63.158 10.70 0.00 40.63 5.34
2852 2889 4.593864 GGGATCGCACGCCTCCTC 62.594 72.222 4.64 0.40 0.00 3.71
2853 2890 3.838271 GGATCGCACGCCTCCTCA 61.838 66.667 4.77 0.00 0.00 3.86
2854 2891 2.279120 GATCGCACGCCTCCTCAG 60.279 66.667 0.00 0.00 0.00 3.35
2855 2892 4.521062 ATCGCACGCCTCCTCAGC 62.521 66.667 0.00 0.00 0.00 4.26
2858 2895 3.461773 GCACGCCTCCTCAGCCTA 61.462 66.667 0.00 0.00 0.00 3.93
2859 2896 3.019003 GCACGCCTCCTCAGCCTAA 62.019 63.158 0.00 0.00 0.00 2.69
2860 2897 1.142748 CACGCCTCCTCAGCCTAAG 59.857 63.158 0.00 0.00 0.00 2.18
2861 2898 1.000486 ACGCCTCCTCAGCCTAAGA 60.000 57.895 0.00 0.00 0.00 2.10
2862 2899 0.614979 ACGCCTCCTCAGCCTAAGAA 60.615 55.000 0.00 0.00 0.00 2.52
2863 2900 0.179097 CGCCTCCTCAGCCTAAGAAC 60.179 60.000 0.00 0.00 0.00 3.01
2864 2901 0.905357 GCCTCCTCAGCCTAAGAACA 59.095 55.000 0.00 0.00 0.00 3.18
2865 2902 1.406205 GCCTCCTCAGCCTAAGAACAC 60.406 57.143 0.00 0.00 0.00 3.32
2866 2903 1.208293 CCTCCTCAGCCTAAGAACACC 59.792 57.143 0.00 0.00 0.00 4.16
2867 2904 2.183679 CTCCTCAGCCTAAGAACACCT 58.816 52.381 0.00 0.00 0.00 4.00
2868 2905 3.366396 CTCCTCAGCCTAAGAACACCTA 58.634 50.000 0.00 0.00 0.00 3.08
2869 2906 3.366396 TCCTCAGCCTAAGAACACCTAG 58.634 50.000 0.00 0.00 0.00 3.02
2870 2907 2.159028 CCTCAGCCTAAGAACACCTAGC 60.159 54.545 0.00 0.00 0.00 3.42
2871 2908 1.831736 TCAGCCTAAGAACACCTAGCC 59.168 52.381 0.00 0.00 0.00 3.93
2872 2909 1.555075 CAGCCTAAGAACACCTAGCCA 59.445 52.381 0.00 0.00 0.00 4.75
2873 2910 1.834263 AGCCTAAGAACACCTAGCCAG 59.166 52.381 0.00 0.00 0.00 4.85
2874 2911 1.831736 GCCTAAGAACACCTAGCCAGA 59.168 52.381 0.00 0.00 0.00 3.86
2875 2912 2.436173 GCCTAAGAACACCTAGCCAGAT 59.564 50.000 0.00 0.00 0.00 2.90
2876 2913 3.118223 GCCTAAGAACACCTAGCCAGATT 60.118 47.826 0.00 0.00 0.00 2.40
2877 2914 4.626529 GCCTAAGAACACCTAGCCAGATTT 60.627 45.833 0.00 0.00 0.00 2.17
2878 2915 4.878397 CCTAAGAACACCTAGCCAGATTTG 59.122 45.833 0.00 0.00 0.00 2.32
2879 2916 4.373156 AAGAACACCTAGCCAGATTTGT 57.627 40.909 0.00 0.00 0.00 2.83
2880 2917 3.944087 AGAACACCTAGCCAGATTTGTC 58.056 45.455 0.00 0.00 0.00 3.18
2881 2918 3.327757 AGAACACCTAGCCAGATTTGTCA 59.672 43.478 0.00 0.00 0.00 3.58
2882 2919 3.788227 ACACCTAGCCAGATTTGTCAA 57.212 42.857 0.00 0.00 0.00 3.18
2883 2920 4.098914 ACACCTAGCCAGATTTGTCAAA 57.901 40.909 0.00 0.00 0.00 2.69
2884 2921 4.666512 ACACCTAGCCAGATTTGTCAAAT 58.333 39.130 10.63 10.63 0.00 2.32
2885 2922 4.702131 ACACCTAGCCAGATTTGTCAAATC 59.298 41.667 24.84 24.84 45.98 2.17
2886 2923 4.096984 CACCTAGCCAGATTTGTCAAATCC 59.903 45.833 27.30 16.24 46.65 3.01
2887 2924 3.313526 CCTAGCCAGATTTGTCAAATCCG 59.686 47.826 27.30 20.19 46.65 4.18
2888 2925 2.094675 AGCCAGATTTGTCAAATCCGG 58.905 47.619 26.58 26.58 46.65 5.14
2889 2926 2.566952 CCAGATTTGTCAAATCCGGC 57.433 50.000 27.30 9.85 46.65 6.13
2890 2927 1.134946 CCAGATTTGTCAAATCCGGCC 59.865 52.381 27.30 9.53 46.65 6.13
2891 2928 1.818060 CAGATTTGTCAAATCCGGCCA 59.182 47.619 27.30 0.00 46.65 5.36
2892 2929 2.428171 CAGATTTGTCAAATCCGGCCAT 59.572 45.455 27.30 10.97 46.65 4.40
2893 2930 2.689983 AGATTTGTCAAATCCGGCCATC 59.310 45.455 27.30 8.49 46.65 3.51
2894 2931 2.214376 TTTGTCAAATCCGGCCATCT 57.786 45.000 2.24 0.00 0.00 2.90
2895 2932 3.358111 TTTGTCAAATCCGGCCATCTA 57.642 42.857 2.24 0.00 0.00 1.98
2896 2933 3.576078 TTGTCAAATCCGGCCATCTAT 57.424 42.857 2.24 0.00 0.00 1.98
2897 2934 4.698201 TTGTCAAATCCGGCCATCTATA 57.302 40.909 2.24 0.00 0.00 1.31
2898 2935 4.002906 TGTCAAATCCGGCCATCTATAC 57.997 45.455 2.24 0.00 0.00 1.47
2899 2936 2.993899 GTCAAATCCGGCCATCTATACG 59.006 50.000 2.24 0.00 0.00 3.06
2900 2937 1.732259 CAAATCCGGCCATCTATACGC 59.268 52.381 2.24 0.00 0.00 4.42
2901 2938 0.973632 AATCCGGCCATCTATACGCA 59.026 50.000 2.24 0.00 0.00 5.24
2902 2939 0.246635 ATCCGGCCATCTATACGCAC 59.753 55.000 2.24 0.00 0.00 5.34
2903 2940 1.110518 TCCGGCCATCTATACGCACA 61.111 55.000 2.24 0.00 0.00 4.57
2904 2941 0.667487 CCGGCCATCTATACGCACAG 60.667 60.000 2.24 0.00 0.00 3.66
2905 2942 0.313987 CGGCCATCTATACGCACAGA 59.686 55.000 2.24 0.00 0.00 3.41
2906 2943 1.784525 GGCCATCTATACGCACAGAC 58.215 55.000 0.00 0.00 0.00 3.51
2907 2944 1.409412 GCCATCTATACGCACAGACG 58.591 55.000 0.00 0.00 39.50 4.18
2908 2945 1.409412 CCATCTATACGCACAGACGC 58.591 55.000 0.00 0.00 36.19 5.19
2916 2953 2.355837 GCACAGACGCGTCCTGAA 60.356 61.111 34.08 0.00 35.69 3.02
2917 2954 1.954146 GCACAGACGCGTCCTGAAA 60.954 57.895 34.08 0.00 35.69 2.69
2918 2955 1.291877 GCACAGACGCGTCCTGAAAT 61.292 55.000 34.08 13.29 35.69 2.17
2919 2956 0.439985 CACAGACGCGTCCTGAAATG 59.560 55.000 34.08 25.66 35.69 2.32
2920 2957 1.291877 ACAGACGCGTCCTGAAATGC 61.292 55.000 34.08 8.23 35.69 3.56
2921 2958 1.741770 AGACGCGTCCTGAAATGCC 60.742 57.895 34.08 7.42 0.00 4.40
2922 2959 2.746277 ACGCGTCCTGAAATGCCC 60.746 61.111 5.58 0.00 0.00 5.36
2923 2960 3.864686 CGCGTCCTGAAATGCCCG 61.865 66.667 0.00 0.00 0.00 6.13
2924 2961 4.179579 GCGTCCTGAAATGCCCGC 62.180 66.667 0.00 0.00 0.00 6.13
2925 2962 3.864686 CGTCCTGAAATGCCCGCG 61.865 66.667 0.00 0.00 0.00 6.46
2926 2963 3.508840 GTCCTGAAATGCCCGCGG 61.509 66.667 21.04 21.04 0.00 6.46
2927 2964 3.711814 TCCTGAAATGCCCGCGGA 61.712 61.111 30.73 8.21 0.00 5.54
2928 2965 2.516930 CCTGAAATGCCCGCGGAT 60.517 61.111 30.73 10.80 0.00 4.18
2929 2966 2.717485 CTGAAATGCCCGCGGATG 59.283 61.111 30.73 12.70 0.00 3.51
2930 2967 3.474230 CTGAAATGCCCGCGGATGC 62.474 63.158 30.73 23.57 37.91 3.91
2931 2968 3.517140 GAAATGCCCGCGGATGCA 61.517 61.111 30.73 28.81 42.97 3.96
2933 2970 2.737932 GAAATGCCCGCGGATGCATC 62.738 60.000 32.72 22.55 46.97 3.91
2942 2979 3.861797 GGATGCATCCGGACGGGT 61.862 66.667 29.34 0.00 37.19 5.28
2943 2980 2.189521 GATGCATCCGGACGGGTT 59.810 61.111 16.23 0.00 37.00 4.11
2944 2981 1.887707 GATGCATCCGGACGGGTTC 60.888 63.158 16.23 0.00 37.00 3.62
2945 2982 2.311688 GATGCATCCGGACGGGTTCT 62.312 60.000 16.23 0.00 37.00 3.01
2946 2983 2.202892 GCATCCGGACGGGTTCTC 60.203 66.667 6.12 0.00 37.00 2.87
2947 2984 3.014085 GCATCCGGACGGGTTCTCA 62.014 63.158 6.12 0.00 37.00 3.27
2948 2985 1.823295 CATCCGGACGGGTTCTCAT 59.177 57.895 6.12 0.00 37.00 2.90
2949 2986 1.037493 CATCCGGACGGGTTCTCATA 58.963 55.000 6.12 0.00 37.00 2.15
2950 2987 1.618837 CATCCGGACGGGTTCTCATAT 59.381 52.381 6.12 0.00 37.00 1.78
2951 2988 1.325355 TCCGGACGGGTTCTCATATC 58.675 55.000 11.27 0.00 37.00 1.63
2952 2989 1.133575 TCCGGACGGGTTCTCATATCT 60.134 52.381 11.27 0.00 37.00 1.98
2953 2990 1.687123 CCGGACGGGTTCTCATATCTT 59.313 52.381 0.00 0.00 0.00 2.40
2954 2991 2.545952 CCGGACGGGTTCTCATATCTTG 60.546 54.545 0.00 0.00 0.00 3.02
2955 2992 2.100916 CGGACGGGTTCTCATATCTTGT 59.899 50.000 0.00 0.00 0.00 3.16
2956 2993 3.458189 GGACGGGTTCTCATATCTTGTG 58.542 50.000 0.00 0.00 0.00 3.33
2957 2994 3.118738 GGACGGGTTCTCATATCTTGTGT 60.119 47.826 0.00 0.00 0.00 3.72
2958 2995 4.113354 GACGGGTTCTCATATCTTGTGTC 58.887 47.826 0.00 0.00 0.00 3.67
2959 2996 3.118738 ACGGGTTCTCATATCTTGTGTCC 60.119 47.826 0.00 0.00 0.00 4.02
2960 2997 3.458189 GGGTTCTCATATCTTGTGTCCG 58.542 50.000 0.00 0.00 0.00 4.79
2961 2998 3.458189 GGTTCTCATATCTTGTGTCCGG 58.542 50.000 0.00 0.00 0.00 5.14
2962 2999 2.866762 GTTCTCATATCTTGTGTCCGGC 59.133 50.000 0.00 0.00 0.00 6.13
2963 3000 2.107366 TCTCATATCTTGTGTCCGGCA 58.893 47.619 0.00 0.00 0.00 5.69
2964 3001 2.700371 TCTCATATCTTGTGTCCGGCAT 59.300 45.455 0.00 0.00 0.00 4.40
2965 3002 3.062763 CTCATATCTTGTGTCCGGCATC 58.937 50.000 0.00 0.00 0.00 3.91
2966 3003 2.146342 CATATCTTGTGTCCGGCATCC 58.854 52.381 0.00 0.00 0.00 3.51
2967 3004 1.199615 TATCTTGTGTCCGGCATCCA 58.800 50.000 0.00 0.00 0.00 3.41
2968 3005 0.392998 ATCTTGTGTCCGGCATCCAC 60.393 55.000 0.00 1.19 0.00 4.02
2969 3006 1.302431 CTTGTGTCCGGCATCCACA 60.302 57.895 0.00 4.17 37.32 4.17
2970 3007 0.677731 CTTGTGTCCGGCATCCACAT 60.678 55.000 14.09 0.00 38.75 3.21
2971 3008 0.615850 TTGTGTCCGGCATCCACATA 59.384 50.000 14.09 1.96 38.75 2.29
2972 3009 0.836606 TGTGTCCGGCATCCACATAT 59.163 50.000 0.00 0.00 34.37 1.78
2973 3010 1.202639 TGTGTCCGGCATCCACATATC 60.203 52.381 0.00 0.00 34.37 1.63
2974 3011 1.070758 GTGTCCGGCATCCACATATCT 59.929 52.381 0.00 0.00 0.00 1.98
2975 3012 1.344438 TGTCCGGCATCCACATATCTC 59.656 52.381 0.00 0.00 0.00 2.75
2976 3013 1.344438 GTCCGGCATCCACATATCTCA 59.656 52.381 0.00 0.00 0.00 3.27
2977 3014 2.046292 TCCGGCATCCACATATCTCAA 58.954 47.619 0.00 0.00 0.00 3.02
2978 3015 2.437651 TCCGGCATCCACATATCTCAAA 59.562 45.455 0.00 0.00 0.00 2.69
2979 3016 3.072915 TCCGGCATCCACATATCTCAAAT 59.927 43.478 0.00 0.00 0.00 2.32
2980 3017 3.438087 CCGGCATCCACATATCTCAAATC 59.562 47.826 0.00 0.00 0.00 2.17
2981 3018 3.438087 CGGCATCCACATATCTCAAATCC 59.562 47.826 0.00 0.00 0.00 3.01
2982 3019 3.438087 GGCATCCACATATCTCAAATCCG 59.562 47.826 0.00 0.00 0.00 4.18
2983 3020 3.438087 GCATCCACATATCTCAAATCCGG 59.562 47.826 0.00 0.00 0.00 5.14
2984 3021 4.803924 GCATCCACATATCTCAAATCCGGA 60.804 45.833 6.61 6.61 0.00 5.14
2985 3022 5.494724 CATCCACATATCTCAAATCCGGAT 58.505 41.667 12.38 12.38 0.00 4.18
2986 3023 5.567037 TCCACATATCTCAAATCCGGATT 57.433 39.130 24.27 24.27 0.00 3.01
2987 3024 5.551233 TCCACATATCTCAAATCCGGATTC 58.449 41.667 29.32 0.00 0.00 2.52
2988 3025 5.307976 TCCACATATCTCAAATCCGGATTCT 59.692 40.000 29.32 16.53 0.00 2.40
2989 3026 5.641209 CCACATATCTCAAATCCGGATTCTC 59.359 44.000 29.32 0.00 0.00 2.87
2990 3027 6.226052 CACATATCTCAAATCCGGATTCTCA 58.774 40.000 29.32 14.99 0.00 3.27
2991 3028 6.707608 CACATATCTCAAATCCGGATTCTCAA 59.292 38.462 29.32 15.90 0.00 3.02
2992 3029 7.227314 CACATATCTCAAATCCGGATTCTCAAA 59.773 37.037 29.32 14.55 0.00 2.69
2993 3030 7.775093 ACATATCTCAAATCCGGATTCTCAAAA 59.225 33.333 29.32 14.55 0.00 2.44
2994 3031 8.790718 CATATCTCAAATCCGGATTCTCAAAAT 58.209 33.333 29.32 18.71 0.00 1.82
2995 3032 6.683974 TCTCAAATCCGGATTCTCAAAATC 57.316 37.500 29.32 0.00 0.00 2.17
2996 3033 6.179756 TCTCAAATCCGGATTCTCAAAATCA 58.820 36.000 29.32 0.00 0.00 2.57
2997 3034 6.830324 TCTCAAATCCGGATTCTCAAAATCAT 59.170 34.615 29.32 7.50 0.00 2.45
2998 3035 6.798482 TCAAATCCGGATTCTCAAAATCATG 58.202 36.000 29.32 18.75 0.00 3.07
2999 3036 4.843220 ATCCGGATTCTCAAAATCATGC 57.157 40.909 12.38 0.00 0.00 4.06
3000 3037 3.619419 TCCGGATTCTCAAAATCATGCA 58.381 40.909 0.00 0.00 0.00 3.96
3001 3038 4.015764 TCCGGATTCTCAAAATCATGCAA 58.984 39.130 0.00 0.00 0.00 4.08
3002 3039 4.462132 TCCGGATTCTCAAAATCATGCAAA 59.538 37.500 0.00 0.00 0.00 3.68
3003 3040 5.127519 TCCGGATTCTCAAAATCATGCAAAT 59.872 36.000 0.00 0.00 0.00 2.32
3004 3041 5.233476 CCGGATTCTCAAAATCATGCAAATG 59.767 40.000 0.00 0.00 0.00 2.32
3005 3042 5.808540 CGGATTCTCAAAATCATGCAAATGT 59.191 36.000 0.00 0.00 0.00 2.71
3006 3043 6.237728 CGGATTCTCAAAATCATGCAAATGTG 60.238 38.462 0.00 0.00 0.00 3.21
3007 3044 6.592607 GGATTCTCAAAATCATGCAAATGTGT 59.407 34.615 0.00 0.00 0.00 3.72
3008 3045 7.118680 GGATTCTCAAAATCATGCAAATGTGTT 59.881 33.333 0.00 0.00 0.00 3.32
3009 3046 9.142515 GATTCTCAAAATCATGCAAATGTGTTA 57.857 29.630 0.00 0.00 0.00 2.41
3010 3047 8.883954 TTCTCAAAATCATGCAAATGTGTTAA 57.116 26.923 0.00 0.00 0.00 2.01
3011 3048 8.883954 TCTCAAAATCATGCAAATGTGTTAAA 57.116 26.923 0.00 0.00 0.00 1.52
3012 3049 8.763356 TCTCAAAATCATGCAAATGTGTTAAAC 58.237 29.630 0.00 0.00 0.00 2.01
3013 3050 8.659925 TCAAAATCATGCAAATGTGTTAAACT 57.340 26.923 0.00 0.00 0.00 2.66
3014 3051 9.107177 TCAAAATCATGCAAATGTGTTAAACTT 57.893 25.926 0.00 0.00 0.00 2.66
3015 3052 9.372541 CAAAATCATGCAAATGTGTTAAACTTC 57.627 29.630 0.00 0.00 0.00 3.01
3016 3053 6.932901 ATCATGCAAATGTGTTAAACTTCG 57.067 33.333 0.00 0.00 0.00 3.79
3017 3054 5.826586 TCATGCAAATGTGTTAAACTTCGT 58.173 33.333 0.00 0.00 0.00 3.85
3018 3055 6.960468 TCATGCAAATGTGTTAAACTTCGTA 58.040 32.000 0.00 0.00 0.00 3.43
3019 3056 7.589395 TCATGCAAATGTGTTAAACTTCGTAT 58.411 30.769 0.00 0.00 0.00 3.06
3020 3057 8.079203 TCATGCAAATGTGTTAAACTTCGTATT 58.921 29.630 0.00 0.00 0.00 1.89
3021 3058 7.616103 TGCAAATGTGTTAAACTTCGTATTG 57.384 32.000 0.00 0.00 0.00 1.90
3022 3059 7.197017 TGCAAATGTGTTAAACTTCGTATTGT 58.803 30.769 0.00 0.00 0.00 2.71
3023 3060 8.343366 TGCAAATGTGTTAAACTTCGTATTGTA 58.657 29.630 0.00 0.00 0.00 2.41
3024 3061 8.837059 GCAAATGTGTTAAACTTCGTATTGTAG 58.163 33.333 0.00 0.00 0.00 2.74
3025 3062 9.872757 CAAATGTGTTAAACTTCGTATTGTAGT 57.127 29.630 0.00 0.00 0.00 2.73
3035 3072 8.652810 AACTTCGTATTGTAGTTTTACTGTGT 57.347 30.769 0.00 0.00 34.91 3.72
3036 3073 9.748708 AACTTCGTATTGTAGTTTTACTGTGTA 57.251 29.630 0.00 0.00 34.91 2.90
3037 3074 9.748708 ACTTCGTATTGTAGTTTTACTGTGTAA 57.251 29.630 0.00 0.00 0.00 2.41
3040 3077 9.357652 TCGTATTGTAGTTTTACTGTGTAATCC 57.642 33.333 0.00 0.00 0.00 3.01
3041 3078 9.142515 CGTATTGTAGTTTTACTGTGTAATCCA 57.857 33.333 0.00 0.00 0.00 3.41
3045 3082 9.439500 TTGTAGTTTTACTGTGTAATCCATACC 57.561 33.333 0.00 0.00 33.27 2.73
3046 3083 8.595421 TGTAGTTTTACTGTGTAATCCATACCA 58.405 33.333 0.00 0.00 33.27 3.25
3047 3084 9.609346 GTAGTTTTACTGTGTAATCCATACCAT 57.391 33.333 0.00 0.00 33.27 3.55
3052 3089 9.567776 TTTACTGTGTAATCCATACCATATTGG 57.432 33.333 0.00 0.00 45.02 3.16
3069 3106 7.672983 CATATTGGTATGGGACTTGTATGAC 57.327 40.000 0.00 0.00 35.16 3.06
3070 3107 5.708736 ATTGGTATGGGACTTGTATGACA 57.291 39.130 0.00 0.00 0.00 3.58
3071 3108 5.708736 TTGGTATGGGACTTGTATGACAT 57.291 39.130 0.00 0.00 0.00 3.06
3072 3109 5.290493 TGGTATGGGACTTGTATGACATC 57.710 43.478 0.00 0.00 0.00 3.06
3073 3110 4.719273 TGGTATGGGACTTGTATGACATCA 59.281 41.667 0.00 0.00 0.00 3.07
3074 3111 5.369404 TGGTATGGGACTTGTATGACATCAT 59.631 40.000 0.00 0.00 40.22 2.45
3075 3112 6.126507 TGGTATGGGACTTGTATGACATCATT 60.127 38.462 0.00 0.00 37.76 2.57
3076 3113 7.071824 TGGTATGGGACTTGTATGACATCATTA 59.928 37.037 0.00 0.00 37.76 1.90
3077 3114 8.103305 GGTATGGGACTTGTATGACATCATTAT 58.897 37.037 0.00 0.00 37.76 1.28
3091 3128 8.465273 TGACATCATTATATATACTCCCTCCG 57.535 38.462 0.00 0.00 0.00 4.63
3092 3129 8.059461 TGACATCATTATATATACTCCCTCCGT 58.941 37.037 0.00 0.00 0.00 4.69
3093 3130 8.466617 ACATCATTATATATACTCCCTCCGTC 57.533 38.462 0.00 0.00 0.00 4.79
3094 3131 7.506261 ACATCATTATATATACTCCCTCCGTCC 59.494 40.741 0.00 0.00 0.00 4.79
3095 3132 6.977104 TCATTATATATACTCCCTCCGTCCA 58.023 40.000 0.00 0.00 0.00 4.02
3096 3133 7.415908 TCATTATATATACTCCCTCCGTCCAA 58.584 38.462 0.00 0.00 0.00 3.53
3097 3134 7.897030 TCATTATATATACTCCCTCCGTCCAAA 59.103 37.037 0.00 0.00 0.00 3.28
3098 3135 8.537016 CATTATATATACTCCCTCCGTCCAAAA 58.463 37.037 0.00 0.00 0.00 2.44
3099 3136 8.495160 TTATATATACTCCCTCCGTCCAAAAA 57.505 34.615 0.00 0.00 0.00 1.94
3100 3137 5.906772 ATATACTCCCTCCGTCCAAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
3101 3138 8.674925 ATATATACTCCCTCCGTCCAAAAATA 57.325 34.615 0.00 0.00 0.00 1.40
3102 3139 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
3103 3140 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
3104 3141 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
3105 3142 4.533311 ACTCCCTCCGTCCAAAAATACTTA 59.467 41.667 0.00 0.00 0.00 2.24
3106 3143 5.191124 ACTCCCTCCGTCCAAAAATACTTAT 59.809 40.000 0.00 0.00 0.00 1.73
3107 3144 5.677567 TCCCTCCGTCCAAAAATACTTATC 58.322 41.667 0.00 0.00 0.00 1.75
3108 3145 4.820173 CCCTCCGTCCAAAAATACTTATCC 59.180 45.833 0.00 0.00 0.00 2.59
3109 3146 5.397559 CCCTCCGTCCAAAAATACTTATCCT 60.398 44.000 0.00 0.00 0.00 3.24
3110 3147 6.183361 CCCTCCGTCCAAAAATACTTATCCTA 60.183 42.308 0.00 0.00 0.00 2.94
3111 3148 6.929606 CCTCCGTCCAAAAATACTTATCCTAG 59.070 42.308 0.00 0.00 0.00 3.02
3112 3149 7.201974 CCTCCGTCCAAAAATACTTATCCTAGA 60.202 40.741 0.00 0.00 0.00 2.43
3113 3150 8.081517 TCCGTCCAAAAATACTTATCCTAGAA 57.918 34.615 0.00 0.00 0.00 2.10
3114 3151 8.542080 TCCGTCCAAAAATACTTATCCTAGAAA 58.458 33.333 0.00 0.00 0.00 2.52
3115 3152 9.338622 CCGTCCAAAAATACTTATCCTAGAAAT 57.661 33.333 0.00 0.00 0.00 2.17
3131 3168 8.840200 TCCTAGAAATGGTTGTATCTAGACTT 57.160 34.615 9.60 0.00 42.48 3.01
3132 3169 9.931698 TCCTAGAAATGGTTGTATCTAGACTTA 57.068 33.333 9.60 0.00 42.48 2.24
3172 3209 8.209917 ACGTCCATTTTATTCATTTCTAGGAC 57.790 34.615 0.00 0.00 38.66 3.85
3173 3210 7.827236 ACGTCCATTTTATTCATTTCTAGGACA 59.173 33.333 0.00 0.00 41.29 4.02
3174 3211 8.673711 CGTCCATTTTATTCATTTCTAGGACAA 58.326 33.333 0.00 0.00 41.29 3.18
3188 3225 9.765795 ATTTCTAGGACAAATATTTCTAGACGG 57.234 33.333 18.07 2.49 36.96 4.79
3189 3226 8.529424 TTCTAGGACAAATATTTCTAGACGGA 57.471 34.615 18.07 7.44 36.96 4.69
3190 3227 8.167605 TCTAGGACAAATATTTCTAGACGGAG 57.832 38.462 15.86 0.00 33.65 4.63
3191 3228 6.163135 AGGACAAATATTTCTAGACGGAGG 57.837 41.667 0.00 0.00 0.00 4.30
3192 3229 5.897824 AGGACAAATATTTCTAGACGGAGGA 59.102 40.000 0.00 0.00 0.00 3.71
3193 3230 6.383147 AGGACAAATATTTCTAGACGGAGGAA 59.617 38.462 0.00 0.00 0.00 3.36
3194 3231 6.702282 GGACAAATATTTCTAGACGGAGGAAG 59.298 42.308 0.00 0.00 0.00 3.46
3195 3232 7.184067 ACAAATATTTCTAGACGGAGGAAGT 57.816 36.000 0.00 0.00 0.00 3.01
3196 3233 8.302515 ACAAATATTTCTAGACGGAGGAAGTA 57.697 34.615 0.00 0.00 0.00 2.24
3197 3234 8.925338 ACAAATATTTCTAGACGGAGGAAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
3198 3235 9.197694 CAAATATTTCTAGACGGAGGAAGTATG 57.802 37.037 0.00 0.00 0.00 2.39
3199 3236 8.480133 AATATTTCTAGACGGAGGAAGTATGT 57.520 34.615 0.00 0.00 0.00 2.29
3200 3237 5.578005 TTTCTAGACGGAGGAAGTATGTG 57.422 43.478 0.00 0.00 0.00 3.21
3201 3238 4.498894 TCTAGACGGAGGAAGTATGTGA 57.501 45.455 0.00 0.00 0.00 3.58
3202 3239 5.050126 TCTAGACGGAGGAAGTATGTGAT 57.950 43.478 0.00 0.00 0.00 3.06
3203 3240 6.183810 TCTAGACGGAGGAAGTATGTGATA 57.816 41.667 0.00 0.00 0.00 2.15
3204 3241 6.231951 TCTAGACGGAGGAAGTATGTGATAG 58.768 44.000 0.00 0.00 0.00 2.08
3205 3242 4.145807 AGACGGAGGAAGTATGTGATAGG 58.854 47.826 0.00 0.00 0.00 2.57
3206 3243 2.628657 ACGGAGGAAGTATGTGATAGGC 59.371 50.000 0.00 0.00 0.00 3.93
3207 3244 2.028930 CGGAGGAAGTATGTGATAGGCC 60.029 54.545 0.00 0.00 0.00 5.19
3208 3245 2.972713 GGAGGAAGTATGTGATAGGCCA 59.027 50.000 5.01 0.00 0.00 5.36
3209 3246 3.584848 GGAGGAAGTATGTGATAGGCCAT 59.415 47.826 5.01 0.00 0.00 4.40
3210 3247 4.323104 GGAGGAAGTATGTGATAGGCCATC 60.323 50.000 5.01 6.88 0.00 3.51
3211 3248 3.584848 AGGAAGTATGTGATAGGCCATCC 59.415 47.826 5.01 1.66 32.09 3.51
3212 3249 3.307762 GGAAGTATGTGATAGGCCATCCC 60.308 52.174 5.01 0.00 32.09 3.85
3213 3250 2.990195 AGTATGTGATAGGCCATCCCA 58.010 47.619 5.01 4.10 35.39 4.37
3214 3251 3.535239 AGTATGTGATAGGCCATCCCAT 58.465 45.455 5.01 11.38 36.02 4.00
3215 3252 4.698895 AGTATGTGATAGGCCATCCCATA 58.301 43.478 5.01 10.41 34.14 2.74
3216 3253 4.718774 AGTATGTGATAGGCCATCCCATAG 59.281 45.833 5.01 0.00 35.46 2.23
3217 3254 3.274281 TGTGATAGGCCATCCCATAGA 57.726 47.619 5.01 0.00 35.39 1.98
3218 3255 3.176411 TGTGATAGGCCATCCCATAGAG 58.824 50.000 5.01 0.00 35.39 2.43
3219 3256 2.503356 GTGATAGGCCATCCCATAGAGG 59.497 54.545 5.01 0.00 35.39 3.69
3228 3265 2.445845 CCATAGAGGGTCGGGCCA 60.446 66.667 4.39 0.00 39.65 5.36
3229 3266 2.511452 CCATAGAGGGTCGGGCCAG 61.511 68.421 4.39 0.00 39.65 4.85
3230 3267 1.762460 CATAGAGGGTCGGGCCAGT 60.762 63.158 4.39 0.00 39.65 4.00
3231 3268 1.003051 ATAGAGGGTCGGGCCAGTT 59.997 57.895 4.39 0.00 39.65 3.16
3232 3269 1.049289 ATAGAGGGTCGGGCCAGTTC 61.049 60.000 4.39 0.00 39.65 3.01
3233 3270 4.097361 GAGGGTCGGGCCAGTTCC 62.097 72.222 4.39 8.19 39.65 3.62
3234 3271 4.658786 AGGGTCGGGCCAGTTCCT 62.659 66.667 4.39 9.52 39.65 3.36
3235 3272 4.097361 GGGTCGGGCCAGTTCCTC 62.097 72.222 4.39 0.00 39.65 3.71
3236 3273 4.097361 GGTCGGGCCAGTTCCTCC 62.097 72.222 4.39 0.00 37.17 4.30
3237 3274 4.097361 GTCGGGCCAGTTCCTCCC 62.097 72.222 4.39 0.00 36.68 4.30
3238 3275 4.649705 TCGGGCCAGTTCCTCCCA 62.650 66.667 4.39 0.00 40.05 4.37
3239 3276 3.646715 CGGGCCAGTTCCTCCCAA 61.647 66.667 4.39 0.00 40.05 4.12
3240 3277 2.851045 GGGCCAGTTCCTCCCAAA 59.149 61.111 4.39 0.00 39.82 3.28
3241 3278 1.155155 GGGCCAGTTCCTCCCAAAA 59.845 57.895 4.39 0.00 39.82 2.44
3242 3279 1.185618 GGGCCAGTTCCTCCCAAAAC 61.186 60.000 4.39 0.00 39.82 2.43
3243 3280 1.185618 GGCCAGTTCCTCCCAAAACC 61.186 60.000 0.00 0.00 0.00 3.27
3244 3281 0.178961 GCCAGTTCCTCCCAAAACCT 60.179 55.000 0.00 0.00 0.00 3.50
3245 3282 1.074889 GCCAGTTCCTCCCAAAACCTA 59.925 52.381 0.00 0.00 0.00 3.08
3246 3283 2.291605 GCCAGTTCCTCCCAAAACCTAT 60.292 50.000 0.00 0.00 0.00 2.57
3247 3284 3.356290 CCAGTTCCTCCCAAAACCTATG 58.644 50.000 0.00 0.00 0.00 2.23
3248 3285 3.245264 CCAGTTCCTCCCAAAACCTATGT 60.245 47.826 0.00 0.00 0.00 2.29
3249 3286 4.407365 CAGTTCCTCCCAAAACCTATGTT 58.593 43.478 0.00 0.00 35.82 2.71
3250 3287 4.832823 CAGTTCCTCCCAAAACCTATGTTT 59.167 41.667 0.00 0.00 46.50 2.83
3265 3302 9.528489 AAACCTATGTTTTACATGGTATTGAGT 57.472 29.630 0.00 0.00 41.92 3.41
3266 3303 8.732746 ACCTATGTTTTACATGGTATTGAGTC 57.267 34.615 0.00 0.00 39.53 3.36
3267 3304 8.548877 ACCTATGTTTTACATGGTATTGAGTCT 58.451 33.333 0.00 0.00 39.53 3.24
3271 3308 8.556213 TGTTTTACATGGTATTGAGTCTAACC 57.444 34.615 0.00 0.00 0.00 2.85
3272 3309 8.380099 TGTTTTACATGGTATTGAGTCTAACCT 58.620 33.333 0.00 0.00 32.99 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 94 3.565902 GTCTGGCTGCTAAAGAGTGTTTT 59.434 43.478 0.00 0.00 0.00 2.43
108 110 4.687215 TCAGCGGTGCAGTCTGGC 62.687 66.667 10.38 0.00 0.00 4.85
187 189 4.895889 TCCGAGACCATCTTGATGTAATCT 59.104 41.667 9.41 8.73 45.81 2.40
234 236 0.451783 CGCTCCTTGTTGTAATGGCC 59.548 55.000 0.00 0.00 0.00 5.36
247 249 1.975680 TCTTACTTTTCACCCGCTCCT 59.024 47.619 0.00 0.00 0.00 3.69
253 255 8.166422 TCTTCTTTCATTCTTACTTTTCACCC 57.834 34.615 0.00 0.00 0.00 4.61
268 270 5.860182 CGTCATGCACATTTTCTTCTTTCAT 59.140 36.000 0.00 0.00 0.00 2.57
282 284 2.983030 GTTGCCCCGTCATGCACA 60.983 61.111 0.00 0.00 37.18 4.57
333 336 4.446857 TCTTTGTCAAACGTCGATCAAC 57.553 40.909 0.00 0.00 0.00 3.18
361 364 0.963962 GTAGACACCGGTTCACCTCA 59.036 55.000 2.97 0.00 0.00 3.86
375 378 2.055684 AACGGCTCTCCTAGGTAGAC 57.944 55.000 9.08 9.09 0.00 2.59
380 383 1.271102 GCATCTAACGGCTCTCCTAGG 59.729 57.143 0.82 0.82 0.00 3.02
408 411 1.958205 CGAATGGATCCTGAGCCGC 60.958 63.158 14.23 0.00 40.42 6.53
445 448 1.097547 AATGTATCAGCGGCACCAGC 61.098 55.000 1.45 0.00 41.10 4.85
446 449 0.940126 GAATGTATCAGCGGCACCAG 59.060 55.000 1.45 0.00 0.00 4.00
447 450 0.251634 TGAATGTATCAGCGGCACCA 59.748 50.000 1.45 0.00 33.04 4.17
448 451 3.079131 TGAATGTATCAGCGGCACC 57.921 52.632 1.45 0.00 33.04 5.01
602 612 7.056522 TGGATAGATAGATAGATTCACCCCA 57.943 40.000 0.00 0.00 0.00 4.96
644 660 2.140792 CACCGGTAGCCTATGCCCT 61.141 63.158 6.87 0.00 38.69 5.19
645 661 1.692173 TTCACCGGTAGCCTATGCCC 61.692 60.000 6.87 0.00 38.69 5.36
735 751 7.413548 CCGTGTAAAACAAAAGCCAAGAAAATT 60.414 33.333 0.00 0.00 0.00 1.82
745 761 2.280445 GTGCACCGTGTAAAACAAAAGC 59.720 45.455 5.22 0.00 0.00 3.51
812 829 4.832608 GTCCGTCCATCGCCCCAC 62.833 72.222 0.00 0.00 38.35 4.61
1197 1220 0.539051 CCAGTCCACTCCAGTCCATC 59.461 60.000 0.00 0.00 0.00 3.51
1199 1222 0.832135 GTCCAGTCCACTCCAGTCCA 60.832 60.000 0.00 0.00 0.00 4.02
1200 1223 0.543174 AGTCCAGTCCACTCCAGTCC 60.543 60.000 0.00 0.00 0.00 3.85
1201 1224 0.605589 CAGTCCAGTCCACTCCAGTC 59.394 60.000 0.00 0.00 0.00 3.51
1202 1225 0.188587 TCAGTCCAGTCCACTCCAGT 59.811 55.000 0.00 0.00 0.00 4.00
1203 1226 0.605589 GTCAGTCCAGTCCACTCCAG 59.394 60.000 0.00 0.00 0.00 3.86
1208 1231 0.322975 AGCATGTCAGTCCAGTCCAC 59.677 55.000 0.00 0.00 0.00 4.02
2254 2277 7.398047 TGGTTGGATTAGTAGCTGTAGTTCTTA 59.602 37.037 0.00 0.00 0.00 2.10
2326 2353 5.629079 AGTATCATCATGCATGCATCTTG 57.371 39.130 30.07 26.46 33.90 3.02
2365 2400 1.523154 GCTCCCAGCTCGATCGATCT 61.523 60.000 19.78 17.43 38.45 2.75
2387 2422 5.366460 ACAAGTAATCATCATCTCAGGCTG 58.634 41.667 8.58 8.58 0.00 4.85
2592 2627 1.362355 GAACCCAACAAACGCCCTG 59.638 57.895 0.00 0.00 0.00 4.45
2593 2628 2.190841 CGAACCCAACAAACGCCCT 61.191 57.895 0.00 0.00 0.00 5.19
2594 2629 2.333581 CGAACCCAACAAACGCCC 59.666 61.111 0.00 0.00 0.00 6.13
2595 2630 1.009335 GACGAACCCAACAAACGCC 60.009 57.895 0.00 0.00 0.00 5.68
2597 2632 1.190763 CTACGACGAACCCAACAAACG 59.809 52.381 0.00 0.00 0.00 3.60
2598 2633 1.528161 CCTACGACGAACCCAACAAAC 59.472 52.381 0.00 0.00 0.00 2.93
2618 2655 0.034059 ACATAGGTATGGCTGCGAGC 59.966 55.000 2.16 0.11 41.46 5.03
2619 2656 1.341209 TCACATAGGTATGGCTGCGAG 59.659 52.381 2.16 0.00 38.00 5.03
2620 2657 1.408969 TCACATAGGTATGGCTGCGA 58.591 50.000 2.16 0.00 38.00 5.10
2621 2658 2.341257 GATCACATAGGTATGGCTGCG 58.659 52.381 2.16 0.00 38.00 5.18
2622 2659 2.289072 ACGATCACATAGGTATGGCTGC 60.289 50.000 2.16 0.00 38.00 5.25
2623 2660 3.256879 AGACGATCACATAGGTATGGCTG 59.743 47.826 2.16 0.00 38.00 4.85
2624 2661 3.501349 AGACGATCACATAGGTATGGCT 58.499 45.455 2.16 0.00 38.00 4.75
2625 2662 3.944055 AGACGATCACATAGGTATGGC 57.056 47.619 2.16 0.00 38.00 4.40
2686 2723 4.248859 GCTGCACAGAATAGTCTCTTTCA 58.751 43.478 0.81 0.00 28.78 2.69
2693 2730 1.633171 CGCGCTGCACAGAATAGTC 59.367 57.895 5.56 0.00 0.00 2.59
2793 2830 2.969238 GGCATGCCCTCGATCGTG 60.969 66.667 27.24 12.87 0.00 4.35
2794 2831 3.157252 AGGCATGCCCTCGATCGT 61.157 61.111 33.14 9.27 41.21 3.73
2813 2850 1.510480 GGCATAGGAATCCGCTGTGC 61.510 60.000 10.98 10.98 0.00 4.57
2814 2851 0.179048 TGGCATAGGAATCCGCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
2815 2852 0.179045 GTGGCATAGGAATCCGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
2816 2853 1.224069 CGTGGCATAGGAATCCGCTG 61.224 60.000 0.00 0.00 0.00 5.18
2817 2854 1.069765 CGTGGCATAGGAATCCGCT 59.930 57.895 0.00 0.00 0.00 5.52
2818 2855 1.961277 CCGTGGCATAGGAATCCGC 60.961 63.158 6.14 0.00 0.00 5.54
2819 2856 1.301716 CCCGTGGCATAGGAATCCG 60.302 63.158 12.70 0.00 0.00 4.18
2820 2857 0.693049 ATCCCGTGGCATAGGAATCC 59.307 55.000 11.86 0.00 32.26 3.01
2821 2858 1.673033 CGATCCCGTGGCATAGGAATC 60.673 57.143 11.86 6.80 32.26 2.52
2822 2859 0.321671 CGATCCCGTGGCATAGGAAT 59.678 55.000 11.86 0.00 32.26 3.01
2823 2860 1.745890 CGATCCCGTGGCATAGGAA 59.254 57.895 11.86 0.00 32.26 3.36
2824 2861 2.867855 GCGATCCCGTGGCATAGGA 61.868 63.158 12.70 11.58 38.24 2.94
2825 2862 2.357517 GCGATCCCGTGGCATAGG 60.358 66.667 5.14 5.14 38.24 2.57
2826 2863 1.956170 GTGCGATCCCGTGGCATAG 60.956 63.158 0.00 0.00 43.64 2.23
2827 2864 2.108157 GTGCGATCCCGTGGCATA 59.892 61.111 0.00 0.00 43.64 3.14
2835 2872 4.593864 GAGGAGGCGTGCGATCCC 62.594 72.222 10.16 1.88 33.30 3.85
2836 2873 3.781770 CTGAGGAGGCGTGCGATCC 62.782 68.421 6.62 6.62 0.00 3.36
2837 2874 2.279120 CTGAGGAGGCGTGCGATC 60.279 66.667 0.00 0.00 0.00 3.69
2838 2875 4.521062 GCTGAGGAGGCGTGCGAT 62.521 66.667 0.00 0.00 0.00 4.58
2845 2882 0.905357 TGTTCTTAGGCTGAGGAGGC 59.095 55.000 6.44 0.00 45.31 4.70
2846 2883 1.208293 GGTGTTCTTAGGCTGAGGAGG 59.792 57.143 6.44 0.00 0.00 4.30
2847 2884 2.183679 AGGTGTTCTTAGGCTGAGGAG 58.816 52.381 6.44 0.00 0.00 3.69
2848 2885 2.327325 AGGTGTTCTTAGGCTGAGGA 57.673 50.000 6.44 0.00 0.00 3.71
2849 2886 2.159028 GCTAGGTGTTCTTAGGCTGAGG 60.159 54.545 6.44 0.00 0.00 3.86
2850 2887 2.159028 GGCTAGGTGTTCTTAGGCTGAG 60.159 54.545 0.00 0.00 42.54 3.35
2851 2888 1.831736 GGCTAGGTGTTCTTAGGCTGA 59.168 52.381 0.00 0.00 42.54 4.26
2852 2889 1.555075 TGGCTAGGTGTTCTTAGGCTG 59.445 52.381 0.00 0.00 44.79 4.85
2853 2890 1.834263 CTGGCTAGGTGTTCTTAGGCT 59.166 52.381 10.88 0.00 44.79 4.58
2854 2891 1.831736 TCTGGCTAGGTGTTCTTAGGC 59.168 52.381 0.00 4.51 44.77 3.93
2855 2892 4.762289 AATCTGGCTAGGTGTTCTTAGG 57.238 45.455 0.00 0.00 0.00 2.69
2856 2893 5.491982 ACAAATCTGGCTAGGTGTTCTTAG 58.508 41.667 0.00 0.00 0.00 2.18
2857 2894 5.012664 TGACAAATCTGGCTAGGTGTTCTTA 59.987 40.000 0.00 0.00 0.00 2.10
2858 2895 4.202461 TGACAAATCTGGCTAGGTGTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
2859 2896 3.327757 TGACAAATCTGGCTAGGTGTTCT 59.672 43.478 0.00 0.00 0.00 3.01
2860 2897 3.674997 TGACAAATCTGGCTAGGTGTTC 58.325 45.455 0.00 0.00 0.00 3.18
2861 2898 3.788227 TGACAAATCTGGCTAGGTGTT 57.212 42.857 0.00 0.00 0.00 3.32
2862 2899 3.788227 TTGACAAATCTGGCTAGGTGT 57.212 42.857 0.00 0.00 0.00 4.16
2863 2900 4.096984 GGATTTGACAAATCTGGCTAGGTG 59.903 45.833 30.39 0.00 45.17 4.00
2864 2901 4.273318 GGATTTGACAAATCTGGCTAGGT 58.727 43.478 30.39 2.47 45.17 3.08
2865 2902 3.313526 CGGATTTGACAAATCTGGCTAGG 59.686 47.826 30.28 13.96 46.03 3.02
2866 2903 4.542662 CGGATTTGACAAATCTGGCTAG 57.457 45.455 30.28 16.47 46.03 3.42
2872 2909 2.214376 TGGCCGGATTTGACAAATCT 57.786 45.000 30.39 7.24 45.17 2.40
2873 2910 2.689983 AGATGGCCGGATTTGACAAATC 59.310 45.455 26.22 26.22 45.12 2.17
2874 2911 2.738743 AGATGGCCGGATTTGACAAAT 58.261 42.857 13.24 13.24 0.00 2.32
2875 2912 2.214376 AGATGGCCGGATTTGACAAA 57.786 45.000 5.05 2.48 0.00 2.83
2876 2913 3.576078 ATAGATGGCCGGATTTGACAA 57.424 42.857 5.05 0.00 0.00 3.18
2877 2914 3.554129 CGTATAGATGGCCGGATTTGACA 60.554 47.826 5.05 0.00 0.00 3.58
2878 2915 2.993899 CGTATAGATGGCCGGATTTGAC 59.006 50.000 5.05 0.00 0.00 3.18
2879 2916 2.611971 GCGTATAGATGGCCGGATTTGA 60.612 50.000 5.05 0.00 0.00 2.69
2880 2917 1.732259 GCGTATAGATGGCCGGATTTG 59.268 52.381 5.05 0.00 0.00 2.32
2881 2918 1.346395 TGCGTATAGATGGCCGGATTT 59.654 47.619 5.05 0.00 0.00 2.17
2882 2919 0.973632 TGCGTATAGATGGCCGGATT 59.026 50.000 5.05 0.00 0.00 3.01
2883 2920 0.246635 GTGCGTATAGATGGCCGGAT 59.753 55.000 5.05 0.00 0.00 4.18
2884 2921 1.110518 TGTGCGTATAGATGGCCGGA 61.111 55.000 5.05 0.00 0.00 5.14
2885 2922 0.667487 CTGTGCGTATAGATGGCCGG 60.667 60.000 0.00 0.00 0.00 6.13
2886 2923 0.313987 TCTGTGCGTATAGATGGCCG 59.686 55.000 0.00 0.00 0.00 6.13
2887 2924 1.784525 GTCTGTGCGTATAGATGGCC 58.215 55.000 2.90 0.00 0.00 5.36
2888 2925 1.409412 CGTCTGTGCGTATAGATGGC 58.591 55.000 10.91 0.00 30.04 4.40
2889 2926 1.409412 GCGTCTGTGCGTATAGATGG 58.591 55.000 18.37 8.70 33.18 3.51
2899 2936 1.291877 ATTTCAGGACGCGTCTGTGC 61.292 55.000 35.50 20.66 34.15 4.57
2900 2937 0.439985 CATTTCAGGACGCGTCTGTG 59.560 55.000 35.50 30.33 34.15 3.66
2901 2938 1.291877 GCATTTCAGGACGCGTCTGT 61.292 55.000 35.50 22.04 34.15 3.41
2902 2939 1.421485 GCATTTCAGGACGCGTCTG 59.579 57.895 35.50 28.88 0.00 3.51
2903 2940 1.741770 GGCATTTCAGGACGCGTCT 60.742 57.895 35.50 20.42 0.00 4.18
2904 2941 2.750888 GGGCATTTCAGGACGCGTC 61.751 63.158 30.67 30.67 0.00 5.19
2905 2942 2.746277 GGGCATTTCAGGACGCGT 60.746 61.111 13.85 13.85 0.00 6.01
2906 2943 3.864686 CGGGCATTTCAGGACGCG 61.865 66.667 3.53 3.53 0.00 6.01
2907 2944 4.179579 GCGGGCATTTCAGGACGC 62.180 66.667 0.00 0.00 40.19 5.19
2908 2945 3.864686 CGCGGGCATTTCAGGACG 61.865 66.667 0.00 0.00 0.00 4.79
2909 2946 3.508840 CCGCGGGCATTTCAGGAC 61.509 66.667 20.10 0.00 0.00 3.85
2910 2947 3.042733 ATCCGCGGGCATTTCAGGA 62.043 57.895 27.83 0.77 0.00 3.86
2911 2948 2.516930 ATCCGCGGGCATTTCAGG 60.517 61.111 27.83 0.00 0.00 3.86
2912 2949 2.717485 CATCCGCGGGCATTTCAG 59.283 61.111 27.83 2.46 0.00 3.02
2913 2950 3.517140 GCATCCGCGGGCATTTCA 61.517 61.111 27.83 3.54 0.00 2.69
2914 2951 3.517140 TGCATCCGCGGGCATTTC 61.517 61.111 27.83 9.40 42.97 2.17
2925 2962 3.400599 AACCCGTCCGGATGCATCC 62.401 63.158 32.34 32.34 43.65 3.51
2926 2963 1.887707 GAACCCGTCCGGATGCATC 60.888 63.158 18.81 18.81 37.50 3.91
2927 2964 2.189521 GAACCCGTCCGGATGCAT 59.810 61.111 18.81 0.00 37.50 3.96
2928 2965 3.000819 AGAACCCGTCCGGATGCA 61.001 61.111 18.81 0.00 37.50 3.96
2929 2966 2.202892 GAGAACCCGTCCGGATGC 60.203 66.667 18.81 4.49 37.50 3.91
2930 2967 1.037493 TATGAGAACCCGTCCGGATG 58.963 55.000 17.27 17.27 37.50 3.51
2931 2968 1.893801 GATATGAGAACCCGTCCGGAT 59.106 52.381 7.81 0.00 37.50 4.18
2932 2969 1.133575 AGATATGAGAACCCGTCCGGA 60.134 52.381 0.00 0.00 37.50 5.14
2933 2970 1.329256 AGATATGAGAACCCGTCCGG 58.671 55.000 0.00 0.00 37.81 5.14
2934 2971 2.100916 ACAAGATATGAGAACCCGTCCG 59.899 50.000 0.00 0.00 0.00 4.79
2935 2972 3.118738 ACACAAGATATGAGAACCCGTCC 60.119 47.826 0.00 0.00 0.00 4.79
2936 2973 4.113354 GACACAAGATATGAGAACCCGTC 58.887 47.826 0.00 0.00 0.00 4.79
2937 2974 3.118738 GGACACAAGATATGAGAACCCGT 60.119 47.826 0.00 0.00 0.00 5.28
2938 2975 3.458189 GGACACAAGATATGAGAACCCG 58.542 50.000 0.00 0.00 0.00 5.28
2939 2976 3.458189 CGGACACAAGATATGAGAACCC 58.542 50.000 0.00 0.00 0.00 4.11
2940 2977 3.458189 CCGGACACAAGATATGAGAACC 58.542 50.000 0.00 0.00 0.00 3.62
2941 2978 2.866762 GCCGGACACAAGATATGAGAAC 59.133 50.000 5.05 0.00 0.00 3.01
2942 2979 2.499693 TGCCGGACACAAGATATGAGAA 59.500 45.455 5.05 0.00 0.00 2.87
2943 2980 2.107366 TGCCGGACACAAGATATGAGA 58.893 47.619 5.05 0.00 0.00 3.27
2944 2981 2.602257 TGCCGGACACAAGATATGAG 57.398 50.000 5.05 0.00 0.00 2.90
2945 2982 2.224281 GGATGCCGGACACAAGATATGA 60.224 50.000 5.05 0.00 0.00 2.15
2946 2983 2.146342 GGATGCCGGACACAAGATATG 58.854 52.381 5.05 0.00 0.00 1.78
2947 2984 1.768275 TGGATGCCGGACACAAGATAT 59.232 47.619 5.05 0.00 0.00 1.63
2948 2985 1.134521 GTGGATGCCGGACACAAGATA 60.135 52.381 5.05 0.00 35.30 1.98
2949 2986 0.392998 GTGGATGCCGGACACAAGAT 60.393 55.000 5.05 0.00 35.30 2.40
2950 2987 1.003839 GTGGATGCCGGACACAAGA 60.004 57.895 5.05 0.00 35.30 3.02
2951 2988 0.677731 ATGTGGATGCCGGACACAAG 60.678 55.000 20.25 0.00 46.74 3.16
2952 2989 0.615850 TATGTGGATGCCGGACACAA 59.384 50.000 20.25 10.68 46.74 3.33
2954 2991 1.070758 AGATATGTGGATGCCGGACAC 59.929 52.381 5.05 8.93 35.75 3.67
2955 2992 1.344438 GAGATATGTGGATGCCGGACA 59.656 52.381 5.05 2.56 0.00 4.02
2956 2993 1.344438 TGAGATATGTGGATGCCGGAC 59.656 52.381 5.05 0.00 0.00 4.79
2957 2994 1.715785 TGAGATATGTGGATGCCGGA 58.284 50.000 5.05 0.00 0.00 5.14
2958 2995 2.549064 TTGAGATATGTGGATGCCGG 57.451 50.000 0.00 0.00 0.00 6.13
2959 2996 3.438087 GGATTTGAGATATGTGGATGCCG 59.562 47.826 0.00 0.00 0.00 5.69
2960 2997 3.438087 CGGATTTGAGATATGTGGATGCC 59.562 47.826 0.00 0.00 0.00 4.40
2961 2998 3.438087 CCGGATTTGAGATATGTGGATGC 59.562 47.826 0.00 0.00 0.00 3.91
2962 2999 4.898320 TCCGGATTTGAGATATGTGGATG 58.102 43.478 0.00 0.00 0.00 3.51
2963 3000 5.768980 ATCCGGATTTGAGATATGTGGAT 57.231 39.130 12.38 0.00 0.00 3.41
2964 3001 5.307976 AGAATCCGGATTTGAGATATGTGGA 59.692 40.000 29.74 0.00 0.00 4.02
2965 3002 5.555017 AGAATCCGGATTTGAGATATGTGG 58.445 41.667 29.74 0.00 0.00 4.17
2966 3003 6.226052 TGAGAATCCGGATTTGAGATATGTG 58.774 40.000 29.74 0.00 0.00 3.21
2967 3004 6.425210 TGAGAATCCGGATTTGAGATATGT 57.575 37.500 29.74 4.39 0.00 2.29
2968 3005 7.734924 TTTGAGAATCCGGATTTGAGATATG 57.265 36.000 29.74 0.00 0.00 1.78
2969 3006 8.930846 ATTTTGAGAATCCGGATTTGAGATAT 57.069 30.769 29.74 16.46 0.00 1.63
2970 3007 7.992608 TGATTTTGAGAATCCGGATTTGAGATA 59.007 33.333 29.74 15.05 0.00 1.98
2971 3008 6.830324 TGATTTTGAGAATCCGGATTTGAGAT 59.170 34.615 29.74 18.11 0.00 2.75
2972 3009 6.179756 TGATTTTGAGAATCCGGATTTGAGA 58.820 36.000 29.74 14.33 0.00 3.27
2973 3010 6.441093 TGATTTTGAGAATCCGGATTTGAG 57.559 37.500 29.74 0.00 0.00 3.02
2974 3011 6.681120 GCATGATTTTGAGAATCCGGATTTGA 60.681 38.462 29.74 14.35 0.00 2.69
2975 3012 5.461078 GCATGATTTTGAGAATCCGGATTTG 59.539 40.000 29.74 19.73 0.00 2.32
2976 3013 5.127519 TGCATGATTTTGAGAATCCGGATTT 59.872 36.000 29.74 19.14 0.00 2.17
2977 3014 4.646040 TGCATGATTTTGAGAATCCGGATT 59.354 37.500 29.60 29.60 0.00 3.01
2978 3015 4.209538 TGCATGATTTTGAGAATCCGGAT 58.790 39.130 12.38 12.38 0.00 4.18
2979 3016 3.619419 TGCATGATTTTGAGAATCCGGA 58.381 40.909 6.61 6.61 0.00 5.14
2980 3017 4.374843 TTGCATGATTTTGAGAATCCGG 57.625 40.909 0.00 0.00 0.00 5.14
2981 3018 5.808540 ACATTTGCATGATTTTGAGAATCCG 59.191 36.000 0.00 0.00 34.11 4.18
2982 3019 6.592607 ACACATTTGCATGATTTTGAGAATCC 59.407 34.615 0.00 0.00 34.11 3.01
2983 3020 7.591006 ACACATTTGCATGATTTTGAGAATC 57.409 32.000 0.00 0.00 34.11 2.52
2984 3021 7.972832 AACACATTTGCATGATTTTGAGAAT 57.027 28.000 0.00 0.00 34.11 2.40
2985 3022 8.883954 TTAACACATTTGCATGATTTTGAGAA 57.116 26.923 0.00 0.00 34.11 2.87
2986 3023 8.763356 GTTTAACACATTTGCATGATTTTGAGA 58.237 29.630 0.00 0.00 34.11 3.27
2987 3024 8.767085 AGTTTAACACATTTGCATGATTTTGAG 58.233 29.630 0.00 0.00 34.11 3.02
2988 3025 8.659925 AGTTTAACACATTTGCATGATTTTGA 57.340 26.923 0.00 0.00 34.11 2.69
2989 3026 9.372541 GAAGTTTAACACATTTGCATGATTTTG 57.627 29.630 0.00 0.00 34.11 2.44
2990 3027 8.274939 CGAAGTTTAACACATTTGCATGATTTT 58.725 29.630 0.00 0.00 34.11 1.82
2991 3028 7.437862 ACGAAGTTTAACACATTTGCATGATTT 59.562 29.630 0.00 0.00 37.78 2.17
2992 3029 6.922957 ACGAAGTTTAACACATTTGCATGATT 59.077 30.769 0.00 0.00 37.78 2.57
2993 3030 6.446318 ACGAAGTTTAACACATTTGCATGAT 58.554 32.000 0.00 0.00 37.78 2.45
2994 3031 5.826586 ACGAAGTTTAACACATTTGCATGA 58.173 33.333 0.00 0.00 37.78 3.07
2995 3032 7.795431 ATACGAAGTTTAACACATTTGCATG 57.205 32.000 0.00 0.00 37.78 4.06
2996 3033 7.865385 ACAATACGAAGTTTAACACATTTGCAT 59.135 29.630 0.00 0.00 37.78 3.96
2997 3034 7.197017 ACAATACGAAGTTTAACACATTTGCA 58.803 30.769 0.00 0.00 37.78 4.08
2998 3035 7.617533 ACAATACGAAGTTTAACACATTTGC 57.382 32.000 0.00 0.00 37.78 3.68
2999 3036 9.872757 ACTACAATACGAAGTTTAACACATTTG 57.127 29.630 0.00 0.00 37.78 2.32
3009 3046 9.101655 ACACAGTAAAACTACAATACGAAGTTT 57.898 29.630 0.00 0.00 37.78 2.66
3010 3047 8.652810 ACACAGTAAAACTACAATACGAAGTT 57.347 30.769 0.00 0.00 37.78 2.66
3014 3051 9.357652 GGATTACACAGTAAAACTACAATACGA 57.642 33.333 0.00 0.00 0.00 3.43
3015 3052 9.142515 TGGATTACACAGTAAAACTACAATACG 57.857 33.333 0.00 0.00 0.00 3.06
3019 3056 9.439500 GGTATGGATTACACAGTAAAACTACAA 57.561 33.333 0.00 0.00 31.99 2.41
3020 3057 8.595421 TGGTATGGATTACACAGTAAAACTACA 58.405 33.333 0.00 0.00 31.99 2.74
3021 3058 9.609346 ATGGTATGGATTACACAGTAAAACTAC 57.391 33.333 0.00 0.00 31.99 2.73
3026 3063 9.567776 CCAATATGGTATGGATTACACAGTAAA 57.432 33.333 0.00 0.00 39.12 2.01
3045 3082 7.223584 TGTCATACAAGTCCCATACCAATATG 58.776 38.462 0.00 0.00 38.38 1.78
3046 3083 7.387265 TGTCATACAAGTCCCATACCAATAT 57.613 36.000 0.00 0.00 0.00 1.28
3047 3084 6.816616 TGTCATACAAGTCCCATACCAATA 57.183 37.500 0.00 0.00 0.00 1.90
3048 3085 5.708736 TGTCATACAAGTCCCATACCAAT 57.291 39.130 0.00 0.00 0.00 3.16
3049 3086 5.190726 TGATGTCATACAAGTCCCATACCAA 59.809 40.000 0.00 0.00 0.00 3.67
3050 3087 4.719273 TGATGTCATACAAGTCCCATACCA 59.281 41.667 0.00 0.00 0.00 3.25
3051 3088 5.290493 TGATGTCATACAAGTCCCATACC 57.710 43.478 0.00 0.00 0.00 2.73
3065 3102 9.083422 CGGAGGGAGTATATATAATGATGTCAT 57.917 37.037 0.00 0.00 38.41 3.06
3066 3103 8.059461 ACGGAGGGAGTATATATAATGATGTCA 58.941 37.037 0.00 0.00 0.00 3.58
3067 3104 8.466617 ACGGAGGGAGTATATATAATGATGTC 57.533 38.462 0.00 0.00 0.00 3.06
3068 3105 7.506261 GGACGGAGGGAGTATATATAATGATGT 59.494 40.741 0.00 0.00 0.00 3.06
3069 3106 7.505923 TGGACGGAGGGAGTATATATAATGATG 59.494 40.741 0.00 0.00 0.00 3.07
3070 3107 7.592736 TGGACGGAGGGAGTATATATAATGAT 58.407 38.462 0.00 0.00 0.00 2.45
3071 3108 6.977104 TGGACGGAGGGAGTATATATAATGA 58.023 40.000 0.00 0.00 0.00 2.57
3072 3109 7.655521 TTGGACGGAGGGAGTATATATAATG 57.344 40.000 0.00 0.00 0.00 1.90
3073 3110 8.674925 TTTTGGACGGAGGGAGTATATATAAT 57.325 34.615 0.00 0.00 0.00 1.28
3074 3111 8.495160 TTTTTGGACGGAGGGAGTATATATAA 57.505 34.615 0.00 0.00 0.00 0.98
3075 3112 8.674925 ATTTTTGGACGGAGGGAGTATATATA 57.325 34.615 0.00 0.00 0.00 0.86
3076 3113 7.569599 ATTTTTGGACGGAGGGAGTATATAT 57.430 36.000 0.00 0.00 0.00 0.86
3077 3114 7.731688 AGTATTTTTGGACGGAGGGAGTATATA 59.268 37.037 0.00 0.00 0.00 0.86
3078 3115 5.906772 ATTTTTGGACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
3079 3116 5.901276 AGTATTTTTGGACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
3080 3117 4.720273 AGTATTTTTGGACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
3081 3118 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
3082 3119 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3083 3120 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
3084 3121 5.397109 GGATAAGTATTTTTGGACGGAGGGA 60.397 44.000 0.00 0.00 0.00 4.20
3085 3122 4.820173 GGATAAGTATTTTTGGACGGAGGG 59.180 45.833 0.00 0.00 0.00 4.30
3086 3123 5.681639 AGGATAAGTATTTTTGGACGGAGG 58.318 41.667 0.00 0.00 0.00 4.30
3087 3124 7.723324 TCTAGGATAAGTATTTTTGGACGGAG 58.277 38.462 0.00 0.00 0.00 4.63
3088 3125 7.664552 TCTAGGATAAGTATTTTTGGACGGA 57.335 36.000 0.00 0.00 0.00 4.69
3089 3126 8.726870 TTTCTAGGATAAGTATTTTTGGACGG 57.273 34.615 0.00 0.00 0.00 4.79
3105 3142 9.440761 AAGTCTAGATACAACCATTTCTAGGAT 57.559 33.333 0.00 0.00 38.67 3.24
3106 3143 8.840200 AAGTCTAGATACAACCATTTCTAGGA 57.160 34.615 0.00 0.00 38.67 2.94
3146 3183 9.321562 GTCCTAGAAATGAATAAAATGGACGTA 57.678 33.333 0.00 0.00 32.39 3.57
3147 3184 7.827236 TGTCCTAGAAATGAATAAAATGGACGT 59.173 33.333 0.00 0.00 41.98 4.34
3148 3185 8.208718 TGTCCTAGAAATGAATAAAATGGACG 57.791 34.615 0.00 0.00 41.98 4.79
3162 3199 9.765795 CCGTCTAGAAATATTTGTCCTAGAAAT 57.234 33.333 19.20 0.00 37.95 2.17
3163 3200 8.974238 TCCGTCTAGAAATATTTGTCCTAGAAA 58.026 33.333 19.20 10.40 37.95 2.52
3164 3201 8.529424 TCCGTCTAGAAATATTTGTCCTAGAA 57.471 34.615 19.20 8.10 37.95 2.10
3165 3202 7.230913 CCTCCGTCTAGAAATATTTGTCCTAGA 59.769 40.741 15.86 15.86 35.00 2.43
3166 3203 7.230913 TCCTCCGTCTAGAAATATTTGTCCTAG 59.769 40.741 5.17 10.16 0.00 3.02
3167 3204 7.064866 TCCTCCGTCTAGAAATATTTGTCCTA 58.935 38.462 5.17 0.52 0.00 2.94
3168 3205 5.897824 TCCTCCGTCTAGAAATATTTGTCCT 59.102 40.000 5.17 0.00 0.00 3.85
3169 3206 6.158023 TCCTCCGTCTAGAAATATTTGTCC 57.842 41.667 5.17 0.00 0.00 4.02
3170 3207 7.266400 ACTTCCTCCGTCTAGAAATATTTGTC 58.734 38.462 5.17 0.00 0.00 3.18
3171 3208 7.184067 ACTTCCTCCGTCTAGAAATATTTGT 57.816 36.000 5.17 4.02 0.00 2.83
3172 3209 9.197694 CATACTTCCTCCGTCTAGAAATATTTG 57.802 37.037 5.17 0.00 0.00 2.32
3173 3210 8.925338 ACATACTTCCTCCGTCTAGAAATATTT 58.075 33.333 0.00 0.00 0.00 1.40
3174 3211 8.361139 CACATACTTCCTCCGTCTAGAAATATT 58.639 37.037 0.00 0.00 0.00 1.28
3175 3212 7.724506 TCACATACTTCCTCCGTCTAGAAATAT 59.275 37.037 0.00 0.00 0.00 1.28
3176 3213 7.058525 TCACATACTTCCTCCGTCTAGAAATA 58.941 38.462 0.00 0.00 0.00 1.40
3177 3214 5.892119 TCACATACTTCCTCCGTCTAGAAAT 59.108 40.000 0.00 0.00 0.00 2.17
3178 3215 5.258841 TCACATACTTCCTCCGTCTAGAAA 58.741 41.667 0.00 0.00 0.00 2.52
3179 3216 4.851843 TCACATACTTCCTCCGTCTAGAA 58.148 43.478 0.00 0.00 0.00 2.10
3180 3217 4.498894 TCACATACTTCCTCCGTCTAGA 57.501 45.455 0.00 0.00 0.00 2.43
3181 3218 5.413213 CCTATCACATACTTCCTCCGTCTAG 59.587 48.000 0.00 0.00 0.00 2.43
3182 3219 5.314529 CCTATCACATACTTCCTCCGTCTA 58.685 45.833 0.00 0.00 0.00 2.59
3183 3220 4.145807 CCTATCACATACTTCCTCCGTCT 58.854 47.826 0.00 0.00 0.00 4.18
3184 3221 3.305471 GCCTATCACATACTTCCTCCGTC 60.305 52.174 0.00 0.00 0.00 4.79
3185 3222 2.628657 GCCTATCACATACTTCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
3186 3223 2.028930 GGCCTATCACATACTTCCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
3187 3224 2.972713 TGGCCTATCACATACTTCCTCC 59.027 50.000 3.32 0.00 0.00 4.30
3188 3225 4.323104 GGATGGCCTATCACATACTTCCTC 60.323 50.000 3.32 0.00 37.54 3.71
3189 3226 3.584848 GGATGGCCTATCACATACTTCCT 59.415 47.826 3.32 0.00 37.54 3.36
3190 3227 3.307762 GGGATGGCCTATCACATACTTCC 60.308 52.174 3.32 0.00 39.13 3.46
3191 3228 3.327757 TGGGATGGCCTATCACATACTTC 59.672 47.826 13.99 0.00 44.18 3.01
3192 3229 3.326521 TGGGATGGCCTATCACATACTT 58.673 45.455 13.99 0.00 44.18 2.24
3193 3230 2.990195 TGGGATGGCCTATCACATACT 58.010 47.619 13.99 0.00 44.18 2.12
3198 3235 2.503356 CCTCTATGGGATGGCCTATCAC 59.497 54.545 3.32 7.41 39.79 3.06
3199 3236 2.837947 CCTCTATGGGATGGCCTATCA 58.162 52.381 3.32 0.00 36.65 2.15
3211 3248 2.445845 TGGCCCGACCCTCTATGG 60.446 66.667 0.00 0.00 37.83 2.74
3212 3249 1.338136 AACTGGCCCGACCCTCTATG 61.338 60.000 0.00 0.00 37.83 2.23
3213 3250 1.003051 AACTGGCCCGACCCTCTAT 59.997 57.895 0.00 0.00 37.83 1.98
3214 3251 1.684734 GAACTGGCCCGACCCTCTA 60.685 63.158 0.00 0.00 37.83 2.43
3215 3252 3.003763 GAACTGGCCCGACCCTCT 61.004 66.667 0.00 0.00 37.83 3.69
3216 3253 4.097361 GGAACTGGCCCGACCCTC 62.097 72.222 0.00 0.00 37.83 4.30
3217 3254 4.658786 AGGAACTGGCCCGACCCT 62.659 66.667 0.00 3.12 37.18 4.34
3218 3255 4.097361 GAGGAACTGGCCCGACCC 62.097 72.222 0.00 0.46 41.55 4.46
3219 3256 4.097361 GGAGGAACTGGCCCGACC 62.097 72.222 0.00 3.56 41.55 4.79
3220 3257 4.097361 GGGAGGAACTGGCCCGAC 62.097 72.222 0.00 0.00 41.55 4.79
3221 3258 4.649705 TGGGAGGAACTGGCCCGA 62.650 66.667 0.00 0.00 44.74 5.14
3222 3259 2.706952 TTTTGGGAGGAACTGGCCCG 62.707 60.000 0.00 0.00 44.74 6.13
3223 3260 1.155155 TTTTGGGAGGAACTGGCCC 59.845 57.895 0.00 0.00 42.37 5.80
3224 3261 1.185618 GGTTTTGGGAGGAACTGGCC 61.186 60.000 0.00 0.00 41.55 5.36
3225 3262 0.178961 AGGTTTTGGGAGGAACTGGC 60.179 55.000 0.00 0.00 41.55 4.85
3226 3263 3.245264 ACATAGGTTTTGGGAGGAACTGG 60.245 47.826 0.00 0.00 41.55 4.00
3227 3264 4.034285 ACATAGGTTTTGGGAGGAACTG 57.966 45.455 0.00 0.00 41.55 3.16
3228 3265 4.741928 AACATAGGTTTTGGGAGGAACT 57.258 40.909 0.00 0.00 35.31 3.01
3240 3277 9.174166 GACTCAATACCATGTAAAACATAGGTT 57.826 33.333 14.83 0.00 39.23 3.50
3241 3278 8.548877 AGACTCAATACCATGTAAAACATAGGT 58.451 33.333 14.34 14.34 40.50 3.08
3242 3279 8.964476 AGACTCAATACCATGTAAAACATAGG 57.036 34.615 0.00 0.64 36.53 2.57
3245 3282 9.174166 GGTTAGACTCAATACCATGTAAAACAT 57.826 33.333 0.00 0.00 39.91 2.71
3246 3283 8.380099 AGGTTAGACTCAATACCATGTAAAACA 58.620 33.333 0.00 0.00 33.02 2.83
3247 3284 8.788325 AGGTTAGACTCAATACCATGTAAAAC 57.212 34.615 0.00 0.00 33.02 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.