>input_sequence_55813
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-----------------------------------------------------------ATGGCATCTGCTACTCTCCTC
AAGTCCTCCTTCCTCCCCAAGAAGGCCGAATGGGGCGTCGCGCGCCAGGTCGCCGCCCCGAGGGTGTCCATGGTCGTCCG
CGCCGGCGCCTACGACGATGAGCTCGTCAAGACCGCGGTACGTACGCTGCAGGCAGCTTCTCGCCGGCCGAATTACACGT
ACTA---GTATAATTCACTGATGGACTGGAGTGGACTGGACTGACATGCTGCTGCTGCTTTGCACGCACGTGCAGAAAAC
CATCGCGTCGCCGGGGCGCGGCATCCTGGCCATGGACGAGTCCAACGCCACCTGCGGGAAGCGCCTCGACTCGATCGGCC
TGGAGAACACAGAGGCGAACCGGCAGGCGTTCCGCACGCTGCTGGTCTCCGTCCCTGGCCTCGGCAACCACATCTCCGGC
GCCATCCTCTTCGAGGAGACGCTCTACCAGTCCACCGTCGACGGCAAGAAGATCGTCGACATCCTGGTGGAGCAGGGCAT
CGTGCCCGGGATCAAGGTGGACAAGGGCCTGGTGCCGCTCACCGGCTCCAACGACGAGTCTTGGTGCCAGGGCCTCGACG
GCCTCGCCTCCCGGGAGGCCGCCTACTACCAGCAGGGCGCCCGCTTCGCCAAGTGGCGCACCGTGGTCAGCATCCCCAAC
GGCCCCTCCGAGCTGGCCGTCAAGGAGGCCGCCTGGGGCCTCGCCCGCTACGCCGCCATCTCGCAGGACAACGGTCTGGT
GCCCATCGTGGAGCCGGAGATCCTGCTGGACGGGGAGCACGGCATCGAGCGCACCTTCGAGGTGGCGCAGAAGGTGTGGG
CCGAGACCTTCTACCAGATGGCCCAGAACAACGTCATGTTCGAGGGCATCCTGCTCAAACCCAGCATGGTCACCCCCGGC
GCCGAGTGCAAGGACAGGGCCACACCGGAGCAGGTCGCCGACTACACCCTCAAGCTCCTCAGCCGCCGCGTGCCGCCCGC
CGTCCCCGGCATCATGTTCCTGTCGGGAGGGCAGTCCGAGGTGGAGGCCACGCTCAACCTCAACGCCATGAACCAGGGGC
CCAACCCGTGGCACGTCTCCTTCTCCTACGCCAGGGCGCTGCAGAACACGTGCCTCAAGACGTGGGGCGGCCGGCCGGAG
AACGTCAAGGCGGCGCAGGAGGCGCTGCTGCTGCGTGCCAAGGCCAACTCGCTCGCGCAGCTCGGAAAGTACACAAGCGA
CGGCGAAGCCGCTGAGGCCAAGGAGGGCATGTTCGTTAAGAACTACAGCTACTAA-------------------------
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>chr5D_1_TraesCS5D01G122700
CACCGGTCTACCACCGCCTTTCACCGTCTACGGCGCGGCTCGTCTTCAAAAGATGCACGGTCAGGTAGCAGG-GTTGCTA
ATTTAACGCTGAAAAAACACTCTTTAGCAGCCAGACTGCACCGCTGACTGCACCCAAACTGGTGCACGAAAGTACTGTAG
CTTGCCACAGGCAATTAGGTTTACAACCAGATTACATCAAGATGGTCTCGGAATGAATGAAGAACGTGGCCTTATGGCCA
TTACAACAAGGAGCGGGTGAAAAGTAAGAATGAAAGAAGAAAAT-GTGCATGACGGGGCAACAACGATGCTCGAGAGCTT
GGGGACCGTCCGATGGTTGATCGACGTTTGACAAAGATGCTCATGAGGTGAACCGGTGTCTACCTAGGAGAGCCGTTAGA
TGCTTGATGGGCGGCTCAGGATCCATTCGAAACGCGGGAGCAGGGGAGCTGGTGCCGCTGATACATTCAGTTAAGTTTAG
TTACAGAACCTGACAGTGAGTCAGAAATCACATACTAC---TGTGCTAGCAAGCAGCTCGCAGCTTGCAACTTGCTGAGA
TCCATCCGGGAAAGAAAAA----CAAGCGGAAGCATGGCAACCACCCCGGGTGGGGTGA----ATCTATCTATCTATCCA
TGGATGCGAGAAA--TCTGAGGGCATAGGCTACCGGTGAAACGCGGCCGCAGGTGATGATGAAAGCCATCTTGAGGCCAG
CAGCGTTCCCACGGATGGATGAGGTGCAGGAATTTTCTTGGC-TTTTGTTTTACACGGTGCACATAAACATGGGGAATTG
CAATTGTGCATTAAAAAGGGGGTGATGAGTGGGGCGATGGACGGACAGCCAGACATTGAGCCATCCAAACCTCCACCCCA
CACCTCATATCCCCTCGTGCCACCCATTCAAATACGAGTCCATTGGCCTCAGCGAGGCAGAGAGGATAGCTAGCACCTTG
AGCTTGAGGTCAGTGGCAGGCAGGCAAGCAAGAAAG---GAAGAAGAAGAAAAAAGGACATGGCATCTGCTACTCTCCTC
AAGTCCTCCTTCCTCCCCAAGAAGGCCGAATGGGGCGTCGCGCGCCAGGTCGCCGCCCCGAGGGTGTCCATGGTCGTCCG
CGCCGGCGCCTACGACGATGAGCTCGTCAAGACCGCGGTACGTACGCTGCAGGCAGCTTCTCGCCGGCCGAATTACACGT
ACTA---GTATAATTCACTGATGGACTGGAGTGGACTGGACTGACATGCTGCTGCTGCTTTGCACGCACGTGCAGAAAAC
CATCGCGTCGCCGGGGCGCGGCATCCTGGCCATGGACGAGTCCAACGCCACCTGCGGGAAGCGCCTCGACTCGATCGGCC
TGGAGAACACAGAGGCGAACCGGCAGGCGTTCCGCACGCTGCTGGTCTCCGTCCCTGGCCTCGGCAACCACATCTCCGGC
GCCATCCTCTTCGAGGAGACGCTCTACCAGTCCACCGTCGACGGCAAGAAGATCGTCGACATCCTGGTGGAGCAGGGCAT
CGTGCCCGGGATCAAGGTGGACAAGGGCCTGGTGCCGCTCACCGGCTCCAACGACGAGTCTTGGTGCCAGGGCCTCGACG
GCCTCGCCTCCCGGGAGGCCGCCTACTACCAGCAGGGCGCCCGCTTCGCCAAGTGGCGCACCGTGGTCAGCATCCCCAAC
GGCCCCTCCGAGCTGGCCGTCAAGGAGGCCGCCTGGGGCCTCGCCCGCTACGCCGCCATCTCGCAGGACAACGGTCTGGT
GCCCATCGTGGAGCCGGAGATCCTGCTGGACGGGGAGCACGGCATCGAGCGCACCTTCGAGGTGGCGCAGAAGGTGTGGG
CCGAGACCTTCTACCAGATGGCCCAGAACAACGTCATGTTCGAGGGCATCCTGCTCAAACCCAGCATGGTCACCCCCGGC
GCCGAGTGCAAGGACAGGGCCACACCGGAGCAGGTCGCCGACTACACCCTCAAGCTCCTCAGCCGCCGCGTGCCGCCCGC
CGTCCCCGGCATCATGTTCCTGTCGGGAGGGCAGTCCGAGGTGGAGGCCACGCTCAACCTCAACGCCATGAACCAGGGGC
CCAACCCGTGGCACGTCTCCTTCTCCTACGCCAGGGCGCTGCAGAACACGTGCCTCAAGACGTGGGGCGGCCGGCCGGAG
AACGTCAAGGCGGCGCAGGAGGCGCTGCTGCTGCGTGCCAAGGCCAACTCGCTCGCGCAGCTCGGAAAGTACACAAGCGA
CGGCGAAGCCGCTGAGGCCAAGGAGGGCATGTTCGTTAAGAACTACAGCTACTAATCCAACCATTCCAATCAACACTACT
ACGTACGT----TCGTTACCAAAGCAGAAATTCAAGATGCA--------TGCATGATGATACTACAGCTGCAAGTGCAAA
GATCGATCGAGCTGGGAGCCTCAGCCTGAGATGATGATTACTTGTATTTTCTAGATCTTTTTTTACTCGTTAATTTGCCT
CTCGATATGCACAATTCATGCTACAGTCCAGTAGATTATTGTAAAGCTACTTTTACGTGTGCGATCCATGGATTTGCATG
GTTACTGCAAAATTTTGCATGTACGTACGTACACCATGAATTGGCGATGAGGTTGGCGCTTGGCAGCAGGGCGT--TTGT
TGGGTTCGTCGTAGGCTCGCAGCCATACCTATGTGATCGTCTTGTCCCTGACCTGGAGCTCCTATGGAAGATCGAAAGAG
AGTGAAAGAGACTATTCTGTGCAGCGCGCAACCTCCTGCTTTTCCTTCTTTCTCAATGGAAAACAAAGGCAAGACGTGGT
GCAGCCCCGTCTACCGGACTGTGCCATCCCACGATCGAGGGCATGCCTCGCACAGCGGATTCCTATGCCACGGGATCGCA
CGCCTCCTCAGCCTAAGAACACCTAGCCAGATTTGTCAAATCCGGCCATCTATACGCACAGACGCGTCCTGAAATGCCCG
CGGATGCATCCGGACGGGTTCTCATATCTTGTGTCCGGCATCCACATATCTCAAATCCGGATTCTCAAAATCATGCAAAT
GTGTTAAACTTCGTATTGTAGTTTTACTGTGTAATCCATACCATATTGGTATGGGACTTGTATGACATCATTATATATAC
TCCCTCCGTCCAAAAATACTTATCCTAGAAATGGTTGTATCTAGACTTATTTTAGTTATAGATACGTCCATTTTATTCAT
TTCTAGGACAAATATTTCTAGACGGAGGAAGTATGTGATAGGCCATCCCATAGAGGGTCGGGCCAGTTCCTCCCAAAACC
TATGTTTTACATGGTATTGAGTCTAACCT
>chr5B_1
CACCGGTCTACCACCGACGTTCACCGCCTACTGCGCGGCTCGTCTTCAAAAGATGCATAGTCAGGTAGCAGGGGTTGCTA
ATTTAACGCTGAAGAAGCACTCTTCAGCAACTAGACCGCGCCGTTGATTGCACCCGAACTAGTGCATGAAAGTACTGTAG
CTTGCCACAGGCAATTAGGTTTACAACCCGATTACATCAAGATGGTCTCGGAATGAATGGAGAACGTGTCCTTATAGCCA
TTACAACAGGGAGCAGGTGAAAAGTAAGGCTGAAAGAAGAAAAG-GTGCATGACGGGGCAACAACGATGCTCGAGAGCTT
GGGGACCGTCTGATGCTTGATCAACTTTTGACAAAGATGCTCACGAGGTGAACCGGTATCTAGCTAGGAGAGCCGTTAGA
TGCTTGATGGACGGCTCAAGATCCATTCAAAACGCGGGAACAGGGGA------GCCGGTGATACATTCAGTTAAGTTCAG
TTACAGAACCTGACAGTGAGTCAGAAATCACATACTACTACTGTGCTAGCAAGCAGCTCACAACTTGCAACTTGCTGAGA
TCCATCCGGGAAAGAAAAA----CAAGCGGAAGCATGGCAACCACCCCGGGCGGGGTGAATCTATCTATCTATCTATCCA
TGGATGCGAGAAAGATCTGT-GGCATAGGCTACCGGTGAAACGCGGCCGCAGGTGATGATGTCAGCCATCTTGAGGCCAG
CAGCGTTCCCACGGATGGATGAGGTGCAGGC----------C-TTTTGTTTTACACGGTGCACATAAACATGGGGAATTG
CAATTGTGCATTAAAAAGG----------------GATGGACGGACAGCCAGACATTGAGCCATCCAAACCTCCACCCCA
CACCTCATATCCCCTCGTGCCACCCATTCAAATATGAGTCCATTGGCCTCAGCGAGGCAGAGAGGATAGCTAGCACCTTG
AGCTTGAGGTCAGTGGCAGGCAGGCAAGCAAGAAAG---GAAGAAGAAGAAAAAAGGACATGGCATCTGCTACTCTCCTC
AAGTCCTCCTTCCTCCCCAAGAAGGCCGAATGGGGCGTCGCGCGCCAGGTCGCCGCCCCGAGGGTGTCCATGGTCGTCCG
CGCCGGCGCCTACGACGATGAGCTCGTCAAGACCGCGGTACGTACGCTGCAG----CTTCTCGCCGGCCGAATTACACGT
ACTA---GTATAATTCACTCA-----TGGACTGGACTGGACTGACATGCTGCTGCTGCTTTGCACGCACGTGCAGAAAAC
CATCGCGTCGCCGGGGCGCGGCATCCTGGCCATGGACGAGTCCAACGCCACCTGCGGGAAGCGCCTCGACTCGATCGGTC
TGGAGAACACAGAGGCGAACCGGCAGGCGTTCCGCACGCTGCTGGTCTCCGTCCCTGGCCTCGGCAACCACATCTCCGGC
GCCATCCTCTTCGAGGAGACGCTCTACCAGTCCACCGTCGACGGCAAGAAGATCGTCGACATCCTGGTGGAGCAGGGCGT
CGTGCCCGGGATCAAGGTGGACAAGGGCCTGGTGCCGCTCACCGGCTCCAATGACGAGTCTTGGTGCCAGGGCCTCGACG
GCCTCGCCTCCCGGGAGGCCGCCTACTACCAGCAGGGCGCCCGCTTCGCCAAGTGGCGCACCGTGGTCAGCATCCCCAAC
GGCCCCTCCGAGCTGGCCGTCAAGGAGGCCGCCTGGGGCCTCGCCCGCTACGCCGCCATCTCGCAGGACAACGGTCTGGT
GCCCATCGTGGAGCCGGAGATCCTGCTGGACGGGGAGCACGGCATCGAGCGCACCTTCGAGGTGGCGCAGAAGGTGTGGG
CCGAGACCTTCTACCAGATGGCCCAGAACAACGTCATGTTCGAGGGCATCCTGCTCAAACCCAGCATGGTCACCCCCGGC
GCCGAGTGCAAGGACAGGGCCACGCCGGAGCAGGTCGCCGACTACACCCTCAAGCTCCTCAGCCGCCGCGTGCCGCCCGC
CGTCCCCGGCATCATGTTCCTCTCGGGAGGGCAGTCCGAGGTGGAGGCCACGCTCAACCTCAATGCCATGAACCAGGGGC
CCAACCCGTGGCACGTCTCCTTCTCCTACGCCCGGGCGCTGCAGAACACGTGCCTCAAGACGTGGGGCGGCCGGCCGGAG
AACGTCAAGGCGGCGCAGGAGGCGCTGCTGCTGCGTGCCAAGGCCAACTCGCTCGCGCAGCTCGGAAAGTACACCAGCGA
CGGCGAAGCCGCCGAGGCCAAGGAGGGCATGTTCGTCAAGAACTACAGCTACTAATCCAACCATTCCAATCAACACTACT
ACGTACGTACGTTCGTTACCAAAGCAGAAATTAAAGATGCA--------TGCATGATGAT---TCAGCTGCAAGTGCAA-
GATCGATCGAGCTGGACCCTCAGT-CTGAGATGATGATTACTTGTATTTTCTAGATCTTTTTTTACTCGTTAATTTGCCT
CTCGATATGCACAATTCATGCTACAGTCCAGTAGATTATTGTAAAGCTACTTTTACGTGTGCAATCCATGGATTTGCATG
GTTACTGCAAAATTTTGCATGTACGTACGTACACCATGAATTGGCGATGAGGTTGGCGCTTGGCAGGGTTGGTTGCTTGT
TGGGTTCGTCGTAG--------CCATACCTATGTGATCGTCTTGTCCCTGACCTGGAGCTCCTATGGAAGATCGAAAGAG
AGGGAAAGAAACTATTCTGTGCAGCGCGCAACCTCCTGCTTTTCCTTCTTTCTCAATGGAAAACAAAGGCAAGACGTGGT
GCAGCCCCGTCTACTGGACTGTGCCATCC---------------------------------------------------
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>chr5A_1
CACCAGTCTACCACCGCCTTTCACCTCCTACTCTGCGGCTCGTCTTCAAAAGATGCACGGTCAGGTAGCAGGGGTTGCTA
ATTTAATGCTGAAGAAACACTCTTCATCAACCAAACTGTGCCGCTGACTGCACCCAAACTGATGCACGGAAGTACTGTAG
CTTGCCACAGGCAGTTAGGTTTACAACTCGATTACATCAAGATGGTCTCGGAATGAATGGAGAATGTGGCCTTATAGCCA
TTACAATAGGGAGCAGATGAAAAGTAAGACTGAAAGAAGAAAAAAGTGCATGATGGGGCAACAATGATGCTCGAGAGCTT
GGGGACCGTCTAATGCTTGATCGACG--TGACAAAGATGCTCACGAGGTTAACCGGTATCTAACTAGGAGAGCCGTTAGA
TGCTTGATGGACGGCTCAGGATCCATCCGGAATGCGGGAACAGGGGA------GCCGGTGATAGATTCAGTTAAGTTTAG
TTACAGAACCTGACAGTGAGTCAGAAATCACATACTACTACTGTGCTAGCAAGCAGCTCACAGCTTGCAACT--------
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>chr5A_542
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------------------------------------------------------------------GCAACTTGCTGAGA
TCCATCCGGAAAAGAAAAAGAGCCAAGCGGAAGCATGGCAACCACCCCGGGCGGGGTGAATCTATCTATCTATCTATCCA
TGGATGCGAGAAA--TCTGT-GGCATAAGCTACCGGTGAAACGCGGCCGCAGGTGATGATGTCAGCCATCTTGAGGCCAG
CAGCGTTCCCACGGATGGATGAGGTGCAGGGATTTTCTTGCCTTTTTGTTTTACACGGTGCACATAAACATGGGGAATTG
CAATTGTGCATTAAAAAAGGGGTGATGACTGGGGCGATGGACGGACAGCCAGACATTGAGCCATCCAAACCTCCACCCCA
CACCTCATATCCCCTCGTGCCACCCATTCAAATACGAGTCCATTGGCCTCAGCGAGGCAGAGAGGATAGCTAGCACCTTG
AGCTTGAGGTCAGTGGCAGGCAGGCAAGCAAGAAAGTAAGAAGAAGAAGAAGAAAGGACATGGCATCTGCTACTCTCCTC
AAGTCCTCCTTCCTCCCCAAGAAGGCCGAATGGGGCGTCGCGCGCCAGGTCGCCGCCCCGAGGGTGTCCATGGTCGTCCG
CGCCGGCGCCTACGACGATGAGCTCGTCAAGACCGCGGTACGTACGCTGCAGGCAGCTTCTCGCCGGCCGAATTACACGT
ACTACTAGTATAATTCACTCA-----TGGACTGGACTGGACTGACATGCTGCTGCTGCTTTGCACGCACGTGCAGAAAAC
CATCGCGTCGCCGGGGCGCGGCATCCTGGCCATGGACGAGTCCAACGCCACCTGCGGGAAGCGCCTCGACTCGATCGGCC
TGGAGAACACAGAGGCGAACCGGCAGGCGTTCCGCACGCTGCTGGTCTCCGTCCCTGGCCTCGGCAACCACATCTCCGGC
GCCATCCTCTTCGAGGAGACGCTCTACCAGTCCACCGTCGACGGCAAGAAGATCGTCGACATCCTGGTGGAGCAGGGCAT
CGTGCCCGGGATCAAGGTGGACAAGGGCCTGGTGCCGCTCACCGGCTCCAACGACGAGTCTTGGTGCCAGGGTCTCGACG
GCCTCGCCTCCCGGGAGGCCGCCTACTACCAGCAGGGCGCCCGCTTCGCCAAGTGGCGCACCGTGGTCAGCATCCCCAAC
GGCCCCTCCGAGCTGGCTGTCAAGGAGGCCGCATGGGGCCTCGCCCGCTACGCCGCCATCTCGCAGGACAACGGTCTGGT
GCCCATCGTGGAGCCGGAGATCCTGCTGGACGGGGAGCACGGCATCGAGCGCACCTTCGAGGTGGCGCAGAAGGTGTGGG
CCGAGACCTTCTACCAGATGGCCCAGAACAACGTCATGTTCGAGGGCATCTTGCTCAAACCCAGCATGGTCACCCCCGGC
GCCGAGTGCAAGGACAGGGCCACGCCGGAGCAGGTCGCCGACTACACCCTCAAGCTCCTCAGCCGCCGCGTGCCGCCCGC
CGTCCCCGGCATTATGTTCCTGTCGGGAGGGCAGTCCGAGGTGGAGGCCACGCTCAACCTCAACGCCATGAACCAGGGGC
CCAACCCGTGGCACGTCTCCTTCTCCTACGCCAGGGCGCTGCAGAACACGTGCCTCAAGACGTGGGGCGGCCGGCCGGAG
AACGTCAAGGCGGCGCAGGAGGCGCTGCTGCTGCGTGCCAAGGCCAACTCACTCGCGCAGCTCGGAAAGTACACCAGCGA
CGGCGAAGCCGCCGAGGCCAAGGAGGGCATGTTCGTCAAGAACTACAGCTACTAATCCAACCATTCCAATCAACACTACT
ACGTACGT----TCGTTACGAAAGCAGAAATTAAAGATGCATGCATGCATGCATGATGAT---ACAGCTGCAAGTGCAA-
GATCGATCGAGCTCGGAGCCTGAGCCTGAGATGATGATTACTTGTATTTTCTAGATCTTTTTTTACTCGTTAATTTGCCT
CTCGATATGCACAATTCATGCTACAGTCCAGTAGATTATTGTAAAGCTACTTTTACGTGTGCGATCCATGGATTTGCATG
GTTACTGCAAAATTTTGCATGTACATACGTACACCATGAATT--------------------------------------
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>SNPs
--------------------------S----S------------------------------------------------
-------------S----------S----S---------S----------------------------------------
----------------------------S------------------------------S---------------S----
--------S-----S--------------S-------------S------------------------------------
----------S----S---------------------------S-------------S----S-----------------
----------S----------------------------S-------SSSSSS----S----------------------
-----------------------------------------------------------S--------------------
---------------------------------------------------S----------------------------
-------------------SS----------------------------------------SS-----------------
------------------------------S---------S---------------------------------------
----------------------------S---------------------------------------------------
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-------------------S-SSSSS----S-------------------------------------------------
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-----------------------S--------------------------------------------------------
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--------------------------------------------------------------------------S-----
------------S-----------------------S-------------------------------------------
--------------------------------S---------------------------SSS----------------S
---------------------S----------------------------------------------------------
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------------------------------------------------------------------SSSS-SS-------
--------------SSSSSSSS----------------------------------------------------------
--S------S----------------------------------------------------------------------
--------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_255
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---------------------------------------------------------------------------GGCCA
TTACAACAAGGAGCG-----------------------------------------------------------------
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>reverse_1225
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------------------------ACTGGAGTGGACTGGACTGA------------------------------------
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>forward_440
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--------------------ATCCATTCGAAACGCGGGAG----------------------------------------
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>reverse_2400
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-------------------------------------------------------------------------------A
GATCGATCGAGCTGGGAGC-------------------------------------------------------------
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