Multiple sequence alignment - TraesCS5D01G122600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G122600 chr5D 100.000 3155 0 0 1 3155 177674769 177677923 0.000000e+00 5827.0
1 TraesCS5D01G122600 chr5D 91.736 121 10 0 86 206 138565671 138565551 5.410000e-38 169.0
2 TraesCS5D01G122600 chr5D 78.417 139 25 5 279 414 510874623 510874487 5.610000e-13 86.1
3 TraesCS5D01G122600 chr5B 95.338 2681 55 18 490 3155 192348426 192351051 0.000000e+00 4194.0
4 TraesCS5D01G122600 chr5B 89.231 130 13 1 79 208 386151745 386151873 9.060000e-36 161.0
5 TraesCS5D01G122600 chr5A 97.313 2047 28 12 715 2741 191093594 191091555 0.000000e+00 3450.0
6 TraesCS5D01G122600 chr5A 89.858 424 31 4 2736 3155 191080642 191080227 4.630000e-148 534.0
7 TraesCS5D01G122600 chr5A 89.474 133 12 2 86 217 459719027 459718896 1.950000e-37 167.0
8 TraesCS5D01G122600 chr4B 87.633 283 35 0 1007 1289 122565727 122565445 2.350000e-86 329.0
9 TraesCS5D01G122600 chr4B 92.308 65 5 0 214 278 9502233 9502297 3.350000e-15 93.5
10 TraesCS5D01G122600 chr4B 95.122 41 2 0 298 338 99040011 99040051 7.300000e-07 65.8
11 TraesCS5D01G122600 chr4A 93.333 120 8 0 86 205 187572346 187572227 8.990000e-41 178.0
12 TraesCS5D01G122600 chr3A 91.935 124 8 2 86 207 22891706 22891583 4.180000e-39 172.0
13 TraesCS5D01G122600 chr3A 93.162 117 8 0 85 201 486048165 486048281 4.180000e-39 172.0
14 TraesCS5D01G122600 chr3A 89.873 79 8 0 200 278 200671771 200671693 5.570000e-18 102.0
15 TraesCS5D01G122600 chr7B 91.803 122 10 0 83 204 516681519 516681640 1.500000e-38 171.0
16 TraesCS5D01G122600 chr7B 72.287 516 125 14 1521 2024 517311202 517310693 9.120000e-31 145.0
17 TraesCS5D01G122600 chr7B 87.302 63 8 0 301 363 558875098 558875036 4.370000e-09 73.1
18 TraesCS5D01G122600 chr7D 92.373 118 9 0 86 203 595978377 595978494 5.410000e-38 169.0
19 TraesCS5D01G122600 chr7D 72.407 540 127 18 1499 2024 488783312 488782781 5.450000e-33 152.0
20 TraesCS5D01G122600 chr7D 80.263 152 26 2 279 426 552926358 552926207 9.250000e-21 111.0
21 TraesCS5D01G122600 chr7A 72.963 540 124 19 1499 2024 556160226 556159695 5.410000e-38 169.0
22 TraesCS5D01G122600 chr2A 90.551 127 8 4 77 201 609453815 609453939 7.000000e-37 165.0
23 TraesCS5D01G122600 chr3D 92.308 78 6 0 200 277 558010837 558010914 9.250000e-21 111.0
24 TraesCS5D01G122600 chr2D 87.805 82 9 1 6 87 577791003 577790923 9.320000e-16 95.3
25 TraesCS5D01G122600 chr2D 100.000 34 0 0 302 335 620605382 620605349 2.630000e-06 63.9
26 TraesCS5D01G122600 chr1B 88.889 72 6 2 279 349 619212107 619212037 1.560000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G122600 chr5D 177674769 177677923 3154 False 5827 5827 100.000 1 3155 1 chr5D.!!$F1 3154
1 TraesCS5D01G122600 chr5B 192348426 192351051 2625 False 4194 4194 95.338 490 3155 1 chr5B.!!$F1 2665
2 TraesCS5D01G122600 chr5A 191091555 191093594 2039 True 3450 3450 97.313 715 2741 1 chr5A.!!$R2 2026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 664 0.034059 ACATAGGTATGGCTGCGAGC 59.966 55.0 2.16 0.11 41.46 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 2568 1.689243 CGGATGGATGAGGTGCAGGA 61.689 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.939782 GTAGAACCTAGGTTAGACTCAATACC 58.060 42.308 27.16 10.01 38.60 2.73
26 27 6.500336 AGAACCTAGGTTAGACTCAATACCA 58.500 40.000 27.16 0.00 38.60 3.25
27 28 7.133483 AGAACCTAGGTTAGACTCAATACCAT 58.867 38.462 27.16 0.00 38.60 3.55
28 29 6.732896 ACCTAGGTTAGACTCAATACCATG 57.267 41.667 9.21 0.00 33.02 3.66
29 30 6.203072 ACCTAGGTTAGACTCAATACCATGT 58.797 40.000 9.21 0.00 33.02 3.21
30 31 7.359849 ACCTAGGTTAGACTCAATACCATGTA 58.640 38.462 9.21 0.00 33.02 2.29
31 32 7.842743 ACCTAGGTTAGACTCAATACCATGTAA 59.157 37.037 9.21 0.00 33.02 2.41
32 33 8.701895 CCTAGGTTAGACTCAATACCATGTAAA 58.298 37.037 0.00 0.00 33.02 2.01
34 35 8.788325 AGGTTAGACTCAATACCATGTAAAAC 57.212 34.615 0.00 0.00 33.02 2.43
35 36 8.380099 AGGTTAGACTCAATACCATGTAAAACA 58.620 33.333 0.00 0.00 33.02 2.83
36 37 9.174166 GGTTAGACTCAATACCATGTAAAACAT 57.826 33.333 0.00 0.00 39.91 2.71
39 40 8.964476 AGACTCAATACCATGTAAAACATAGG 57.036 34.615 0.00 0.64 36.53 2.57
40 41 8.548877 AGACTCAATACCATGTAAAACATAGGT 58.451 33.333 14.34 14.34 40.50 3.08
41 42 9.174166 GACTCAATACCATGTAAAACATAGGTT 57.826 33.333 14.83 0.00 39.23 3.50
53 54 4.741928 AACATAGGTTTTGGGAGGAACT 57.258 40.909 0.00 0.00 35.31 3.01
54 55 4.034285 ACATAGGTTTTGGGAGGAACTG 57.966 45.455 0.00 0.00 41.55 3.16
55 56 3.245264 ACATAGGTTTTGGGAGGAACTGG 60.245 47.826 0.00 0.00 41.55 4.00
56 57 0.178961 AGGTTTTGGGAGGAACTGGC 60.179 55.000 0.00 0.00 41.55 4.85
57 58 1.185618 GGTTTTGGGAGGAACTGGCC 61.186 60.000 0.00 0.00 41.55 5.36
58 59 1.155155 TTTTGGGAGGAACTGGCCC 59.845 57.895 0.00 0.00 42.37 5.80
59 60 2.706952 TTTTGGGAGGAACTGGCCCG 62.707 60.000 0.00 0.00 44.74 6.13
60 61 4.649705 TGGGAGGAACTGGCCCGA 62.650 66.667 0.00 0.00 44.74 5.14
61 62 4.097361 GGGAGGAACTGGCCCGAC 62.097 72.222 0.00 0.00 41.55 4.79
62 63 4.097361 GGAGGAACTGGCCCGACC 62.097 72.222 0.00 3.56 41.55 4.79
63 64 4.097361 GAGGAACTGGCCCGACCC 62.097 72.222 0.00 0.46 41.55 4.46
64 65 4.658786 AGGAACTGGCCCGACCCT 62.659 66.667 0.00 3.12 37.18 4.34
65 66 4.097361 GGAACTGGCCCGACCCTC 62.097 72.222 0.00 0.00 37.83 4.30
66 67 3.003763 GAACTGGCCCGACCCTCT 61.004 66.667 0.00 0.00 37.83 3.69
67 68 1.684734 GAACTGGCCCGACCCTCTA 60.685 63.158 0.00 0.00 37.83 2.43
68 69 1.003051 AACTGGCCCGACCCTCTAT 59.997 57.895 0.00 0.00 37.83 1.98
69 70 1.338136 AACTGGCCCGACCCTCTATG 61.338 60.000 0.00 0.00 37.83 2.23
70 71 2.445845 TGGCCCGACCCTCTATGG 60.446 66.667 0.00 0.00 37.83 2.74
82 83 2.837947 CCTCTATGGGATGGCCTATCA 58.162 52.381 3.32 0.00 36.65 2.15
83 84 2.503356 CCTCTATGGGATGGCCTATCAC 59.497 54.545 3.32 7.41 39.79 3.06
88 89 2.990195 TGGGATGGCCTATCACATACT 58.010 47.619 13.99 0.00 44.18 2.12
89 90 3.326521 TGGGATGGCCTATCACATACTT 58.673 45.455 13.99 0.00 44.18 2.24
90 91 3.327757 TGGGATGGCCTATCACATACTTC 59.672 47.826 13.99 0.00 44.18 3.01
91 92 3.307762 GGGATGGCCTATCACATACTTCC 60.308 52.174 3.32 0.00 39.13 3.46
92 93 3.584848 GGATGGCCTATCACATACTTCCT 59.415 47.826 3.32 0.00 37.54 3.36
93 94 4.323104 GGATGGCCTATCACATACTTCCTC 60.323 50.000 3.32 0.00 37.54 3.71
94 95 2.972713 TGGCCTATCACATACTTCCTCC 59.027 50.000 3.32 0.00 0.00 4.30
95 96 2.028930 GGCCTATCACATACTTCCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
96 97 2.628657 GCCTATCACATACTTCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
97 98 3.305471 GCCTATCACATACTTCCTCCGTC 60.305 52.174 0.00 0.00 0.00 4.79
98 99 4.145807 CCTATCACATACTTCCTCCGTCT 58.854 47.826 0.00 0.00 0.00 4.18
99 100 5.314529 CCTATCACATACTTCCTCCGTCTA 58.685 45.833 0.00 0.00 0.00 2.59
100 101 5.413213 CCTATCACATACTTCCTCCGTCTAG 59.587 48.000 0.00 0.00 0.00 2.43
101 102 4.498894 TCACATACTTCCTCCGTCTAGA 57.501 45.455 0.00 0.00 0.00 2.43
102 103 4.851843 TCACATACTTCCTCCGTCTAGAA 58.148 43.478 0.00 0.00 0.00 2.10
103 104 5.258841 TCACATACTTCCTCCGTCTAGAAA 58.741 41.667 0.00 0.00 0.00 2.52
104 105 5.892119 TCACATACTTCCTCCGTCTAGAAAT 59.108 40.000 0.00 0.00 0.00 2.17
105 106 7.058525 TCACATACTTCCTCCGTCTAGAAATA 58.941 38.462 0.00 0.00 0.00 1.40
106 107 7.724506 TCACATACTTCCTCCGTCTAGAAATAT 59.275 37.037 0.00 0.00 0.00 1.28
107 108 8.361139 CACATACTTCCTCCGTCTAGAAATATT 58.639 37.037 0.00 0.00 0.00 1.28
108 109 8.925338 ACATACTTCCTCCGTCTAGAAATATTT 58.075 33.333 0.00 0.00 0.00 1.40
109 110 9.197694 CATACTTCCTCCGTCTAGAAATATTTG 57.802 37.037 5.17 0.00 0.00 2.32
110 111 7.184067 ACTTCCTCCGTCTAGAAATATTTGT 57.816 36.000 5.17 4.02 0.00 2.83
111 112 7.266400 ACTTCCTCCGTCTAGAAATATTTGTC 58.734 38.462 5.17 0.00 0.00 3.18
112 113 6.158023 TCCTCCGTCTAGAAATATTTGTCC 57.842 41.667 5.17 0.00 0.00 4.02
113 114 5.897824 TCCTCCGTCTAGAAATATTTGTCCT 59.102 40.000 5.17 0.00 0.00 3.85
114 115 7.064866 TCCTCCGTCTAGAAATATTTGTCCTA 58.935 38.462 5.17 0.52 0.00 2.94
115 116 7.230913 TCCTCCGTCTAGAAATATTTGTCCTAG 59.769 40.741 5.17 10.16 0.00 3.02
116 117 7.230913 CCTCCGTCTAGAAATATTTGTCCTAGA 59.769 40.741 15.86 15.86 35.00 2.43
117 118 8.529424 TCCGTCTAGAAATATTTGTCCTAGAA 57.471 34.615 19.20 8.10 37.95 2.10
118 119 8.974238 TCCGTCTAGAAATATTTGTCCTAGAAA 58.026 33.333 19.20 10.40 37.95 2.52
119 120 9.765795 CCGTCTAGAAATATTTGTCCTAGAAAT 57.234 33.333 19.20 0.00 37.95 2.17
133 134 8.208718 TGTCCTAGAAATGAATAAAATGGACG 57.791 34.615 0.00 0.00 41.98 4.79
134 135 7.827236 TGTCCTAGAAATGAATAAAATGGACGT 59.173 33.333 0.00 0.00 41.98 4.34
135 136 9.321562 GTCCTAGAAATGAATAAAATGGACGTA 57.678 33.333 0.00 0.00 32.39 3.57
175 176 8.840200 AAGTCTAGATACAACCATTTCTAGGA 57.160 34.615 0.00 0.00 38.67 2.94
176 177 9.440761 AAGTCTAGATACAACCATTTCTAGGAT 57.559 33.333 0.00 0.00 38.67 3.24
192 193 8.726870 TTTCTAGGATAAGTATTTTTGGACGG 57.273 34.615 0.00 0.00 0.00 4.79
193 194 7.664552 TCTAGGATAAGTATTTTTGGACGGA 57.335 36.000 0.00 0.00 0.00 4.69
194 195 7.723324 TCTAGGATAAGTATTTTTGGACGGAG 58.277 38.462 0.00 0.00 0.00 4.63
195 196 5.681639 AGGATAAGTATTTTTGGACGGAGG 58.318 41.667 0.00 0.00 0.00 4.30
196 197 4.820173 GGATAAGTATTTTTGGACGGAGGG 59.180 45.833 0.00 0.00 0.00 4.30
197 198 5.397109 GGATAAGTATTTTTGGACGGAGGGA 60.397 44.000 0.00 0.00 0.00 4.20
198 199 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
199 200 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
200 201 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
201 202 4.720273 AGTATTTTTGGACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
202 203 5.901276 AGTATTTTTGGACGGAGGGAGTATA 59.099 40.000 0.00 0.00 0.00 1.47
203 204 5.906772 ATTTTTGGACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
204 205 7.731688 AGTATTTTTGGACGGAGGGAGTATATA 59.268 37.037 0.00 0.00 0.00 0.86
205 206 7.569599 ATTTTTGGACGGAGGGAGTATATAT 57.430 36.000 0.00 0.00 0.00 0.86
206 207 8.674925 ATTTTTGGACGGAGGGAGTATATATA 57.325 34.615 0.00 0.00 0.00 0.86
207 208 8.495160 TTTTTGGACGGAGGGAGTATATATAA 57.505 34.615 0.00 0.00 0.00 0.98
208 209 8.674925 TTTTGGACGGAGGGAGTATATATAAT 57.325 34.615 0.00 0.00 0.00 1.28
209 210 7.655521 TTGGACGGAGGGAGTATATATAATG 57.344 40.000 0.00 0.00 0.00 1.90
210 211 6.977104 TGGACGGAGGGAGTATATATAATGA 58.023 40.000 0.00 0.00 0.00 2.57
211 212 7.592736 TGGACGGAGGGAGTATATATAATGAT 58.407 38.462 0.00 0.00 0.00 2.45
212 213 7.505923 TGGACGGAGGGAGTATATATAATGATG 59.494 40.741 0.00 0.00 0.00 3.07
213 214 7.506261 GGACGGAGGGAGTATATATAATGATGT 59.494 40.741 0.00 0.00 0.00 3.06
214 215 8.466617 ACGGAGGGAGTATATATAATGATGTC 57.533 38.462 0.00 0.00 0.00 3.06
215 216 8.059461 ACGGAGGGAGTATATATAATGATGTCA 58.941 37.037 0.00 0.00 0.00 3.58
216 217 9.083422 CGGAGGGAGTATATATAATGATGTCAT 57.917 37.037 0.00 0.00 38.41 3.06
230 231 5.290493 TGATGTCATACAAGTCCCATACC 57.710 43.478 0.00 0.00 0.00 2.73
231 232 4.719273 TGATGTCATACAAGTCCCATACCA 59.281 41.667 0.00 0.00 0.00 3.25
232 233 5.190726 TGATGTCATACAAGTCCCATACCAA 59.809 40.000 0.00 0.00 0.00 3.67
233 234 5.708736 TGTCATACAAGTCCCATACCAAT 57.291 39.130 0.00 0.00 0.00 3.16
234 235 6.816616 TGTCATACAAGTCCCATACCAATA 57.183 37.500 0.00 0.00 0.00 1.90
235 236 7.387265 TGTCATACAAGTCCCATACCAATAT 57.613 36.000 0.00 0.00 0.00 1.28
236 237 7.223584 TGTCATACAAGTCCCATACCAATATG 58.776 38.462 0.00 0.00 38.38 1.78
255 256 9.567776 CCAATATGGTATGGATTACACAGTAAA 57.432 33.333 0.00 0.00 39.12 2.01
260 261 9.609346 ATGGTATGGATTACACAGTAAAACTAC 57.391 33.333 0.00 0.00 31.99 2.73
261 262 8.595421 TGGTATGGATTACACAGTAAAACTACA 58.405 33.333 0.00 0.00 31.99 2.74
262 263 9.439500 GGTATGGATTACACAGTAAAACTACAA 57.561 33.333 0.00 0.00 31.99 2.41
266 267 9.142515 TGGATTACACAGTAAAACTACAATACG 57.857 33.333 0.00 0.00 0.00 3.06
267 268 9.357652 GGATTACACAGTAAAACTACAATACGA 57.642 33.333 0.00 0.00 0.00 3.43
271 272 8.652810 ACACAGTAAAACTACAATACGAAGTT 57.347 30.769 0.00 0.00 37.78 2.66
272 273 9.101655 ACACAGTAAAACTACAATACGAAGTTT 57.898 29.630 0.00 0.00 37.78 2.66
282 283 9.872757 ACTACAATACGAAGTTTAACACATTTG 57.127 29.630 0.00 0.00 37.78 2.32
283 284 7.617533 ACAATACGAAGTTTAACACATTTGC 57.382 32.000 0.00 0.00 37.78 3.68
284 285 7.197017 ACAATACGAAGTTTAACACATTTGCA 58.803 30.769 0.00 0.00 37.78 4.08
285 286 7.865385 ACAATACGAAGTTTAACACATTTGCAT 59.135 29.630 0.00 0.00 37.78 3.96
286 287 7.795431 ATACGAAGTTTAACACATTTGCATG 57.205 32.000 0.00 0.00 37.78 4.06
287 288 5.826586 ACGAAGTTTAACACATTTGCATGA 58.173 33.333 0.00 0.00 37.78 3.07
288 289 6.446318 ACGAAGTTTAACACATTTGCATGAT 58.554 32.000 0.00 0.00 37.78 2.45
289 290 6.922957 ACGAAGTTTAACACATTTGCATGATT 59.077 30.769 0.00 0.00 37.78 2.57
290 291 7.437862 ACGAAGTTTAACACATTTGCATGATTT 59.562 29.630 0.00 0.00 37.78 2.17
291 292 8.274939 CGAAGTTTAACACATTTGCATGATTTT 58.725 29.630 0.00 0.00 34.11 1.82
292 293 9.372541 GAAGTTTAACACATTTGCATGATTTTG 57.627 29.630 0.00 0.00 34.11 2.44
293 294 8.659925 AGTTTAACACATTTGCATGATTTTGA 57.340 26.923 0.00 0.00 34.11 2.69
294 295 8.767085 AGTTTAACACATTTGCATGATTTTGAG 58.233 29.630 0.00 0.00 34.11 3.02
295 296 8.763356 GTTTAACACATTTGCATGATTTTGAGA 58.237 29.630 0.00 0.00 34.11 3.27
296 297 8.883954 TTAACACATTTGCATGATTTTGAGAA 57.116 26.923 0.00 0.00 34.11 2.87
297 298 7.972832 AACACATTTGCATGATTTTGAGAAT 57.027 28.000 0.00 0.00 34.11 2.40
298 299 7.591006 ACACATTTGCATGATTTTGAGAATC 57.409 32.000 0.00 0.00 34.11 2.52
299 300 6.592607 ACACATTTGCATGATTTTGAGAATCC 59.407 34.615 0.00 0.00 34.11 3.01
300 301 5.808540 ACATTTGCATGATTTTGAGAATCCG 59.191 36.000 0.00 0.00 34.11 4.18
301 302 4.374843 TTGCATGATTTTGAGAATCCGG 57.625 40.909 0.00 0.00 0.00 5.14
302 303 3.619419 TGCATGATTTTGAGAATCCGGA 58.381 40.909 6.61 6.61 0.00 5.14
303 304 4.209538 TGCATGATTTTGAGAATCCGGAT 58.790 39.130 12.38 12.38 0.00 4.18
304 305 4.646040 TGCATGATTTTGAGAATCCGGATT 59.354 37.500 29.60 29.60 0.00 3.01
305 306 5.127519 TGCATGATTTTGAGAATCCGGATTT 59.872 36.000 29.74 19.14 0.00 2.17
306 307 5.461078 GCATGATTTTGAGAATCCGGATTTG 59.539 40.000 29.74 19.73 0.00 2.32
307 308 6.681120 GCATGATTTTGAGAATCCGGATTTGA 60.681 38.462 29.74 14.35 0.00 2.69
308 309 6.441093 TGATTTTGAGAATCCGGATTTGAG 57.559 37.500 29.74 0.00 0.00 3.02
309 310 6.179756 TGATTTTGAGAATCCGGATTTGAGA 58.820 36.000 29.74 14.33 0.00 3.27
310 311 6.830324 TGATTTTGAGAATCCGGATTTGAGAT 59.170 34.615 29.74 18.11 0.00 2.75
311 312 7.992608 TGATTTTGAGAATCCGGATTTGAGATA 59.007 33.333 29.74 15.05 0.00 1.98
312 313 8.930846 ATTTTGAGAATCCGGATTTGAGATAT 57.069 30.769 29.74 16.46 0.00 1.63
313 314 7.734924 TTTGAGAATCCGGATTTGAGATATG 57.265 36.000 29.74 0.00 0.00 1.78
314 315 6.425210 TGAGAATCCGGATTTGAGATATGT 57.575 37.500 29.74 4.39 0.00 2.29
315 316 6.226052 TGAGAATCCGGATTTGAGATATGTG 58.774 40.000 29.74 0.00 0.00 3.21
316 317 5.555017 AGAATCCGGATTTGAGATATGTGG 58.445 41.667 29.74 0.00 0.00 4.17
317 318 5.307976 AGAATCCGGATTTGAGATATGTGGA 59.692 40.000 29.74 0.00 0.00 4.02
318 319 5.768980 ATCCGGATTTGAGATATGTGGAT 57.231 39.130 12.38 0.00 0.00 3.41
319 320 4.898320 TCCGGATTTGAGATATGTGGATG 58.102 43.478 0.00 0.00 0.00 3.51
320 321 3.438087 CCGGATTTGAGATATGTGGATGC 59.562 47.826 0.00 0.00 0.00 3.91
321 322 3.438087 CGGATTTGAGATATGTGGATGCC 59.562 47.826 0.00 0.00 0.00 4.40
322 323 3.438087 GGATTTGAGATATGTGGATGCCG 59.562 47.826 0.00 0.00 0.00 5.69
323 324 2.549064 TTGAGATATGTGGATGCCGG 57.451 50.000 0.00 0.00 0.00 6.13
324 325 1.715785 TGAGATATGTGGATGCCGGA 58.284 50.000 5.05 0.00 0.00 5.14
325 326 1.344438 TGAGATATGTGGATGCCGGAC 59.656 52.381 5.05 0.00 0.00 4.79
326 327 1.344438 GAGATATGTGGATGCCGGACA 59.656 52.381 5.05 2.56 0.00 4.02
327 328 1.070758 AGATATGTGGATGCCGGACAC 59.929 52.381 5.05 8.93 35.75 3.67
329 330 0.615850 TATGTGGATGCCGGACACAA 59.384 50.000 20.25 10.68 46.74 3.33
330 331 0.677731 ATGTGGATGCCGGACACAAG 60.678 55.000 20.25 0.00 46.74 3.16
331 332 1.003839 GTGGATGCCGGACACAAGA 60.004 57.895 5.05 0.00 35.30 3.02
332 333 0.392998 GTGGATGCCGGACACAAGAT 60.393 55.000 5.05 0.00 35.30 2.40
333 334 1.134521 GTGGATGCCGGACACAAGATA 60.135 52.381 5.05 0.00 35.30 1.98
334 335 1.768275 TGGATGCCGGACACAAGATAT 59.232 47.619 5.05 0.00 0.00 1.63
335 336 2.146342 GGATGCCGGACACAAGATATG 58.854 52.381 5.05 0.00 0.00 1.78
336 337 2.224281 GGATGCCGGACACAAGATATGA 60.224 50.000 5.05 0.00 0.00 2.15
337 338 2.602257 TGCCGGACACAAGATATGAG 57.398 50.000 5.05 0.00 0.00 2.90
338 339 2.107366 TGCCGGACACAAGATATGAGA 58.893 47.619 5.05 0.00 0.00 3.27
339 340 2.499693 TGCCGGACACAAGATATGAGAA 59.500 45.455 5.05 0.00 0.00 2.87
340 341 2.866762 GCCGGACACAAGATATGAGAAC 59.133 50.000 5.05 0.00 0.00 3.01
341 342 3.458189 CCGGACACAAGATATGAGAACC 58.542 50.000 0.00 0.00 0.00 3.62
342 343 3.458189 CGGACACAAGATATGAGAACCC 58.542 50.000 0.00 0.00 0.00 4.11
343 344 3.458189 GGACACAAGATATGAGAACCCG 58.542 50.000 0.00 0.00 0.00 5.28
344 345 3.118738 GGACACAAGATATGAGAACCCGT 60.119 47.826 0.00 0.00 0.00 5.28
345 346 4.113354 GACACAAGATATGAGAACCCGTC 58.887 47.826 0.00 0.00 0.00 4.79
346 347 3.118738 ACACAAGATATGAGAACCCGTCC 60.119 47.826 0.00 0.00 0.00 4.79
347 348 2.100916 ACAAGATATGAGAACCCGTCCG 59.899 50.000 0.00 0.00 0.00 4.79
348 349 1.329256 AGATATGAGAACCCGTCCGG 58.671 55.000 0.00 0.00 37.81 5.14
349 350 1.133575 AGATATGAGAACCCGTCCGGA 60.134 52.381 0.00 0.00 37.50 5.14
350 351 1.893801 GATATGAGAACCCGTCCGGAT 59.106 52.381 7.81 0.00 37.50 4.18
351 352 1.037493 TATGAGAACCCGTCCGGATG 58.963 55.000 17.27 17.27 37.50 3.51
352 353 2.202892 GAGAACCCGTCCGGATGC 60.203 66.667 18.81 4.49 37.50 3.91
353 354 3.000819 AGAACCCGTCCGGATGCA 61.001 61.111 18.81 0.00 37.50 3.96
354 355 2.189521 GAACCCGTCCGGATGCAT 59.810 61.111 18.81 0.00 37.50 3.96
355 356 1.887707 GAACCCGTCCGGATGCATC 60.888 63.158 18.81 18.81 37.50 3.91
356 357 3.400599 AACCCGTCCGGATGCATCC 62.401 63.158 32.34 32.34 43.65 3.51
367 368 3.517140 TGCATCCGCGGGCATTTC 61.517 61.111 27.83 9.40 42.97 2.17
368 369 3.517140 GCATCCGCGGGCATTTCA 61.517 61.111 27.83 3.54 0.00 2.69
369 370 2.717485 CATCCGCGGGCATTTCAG 59.283 61.111 27.83 2.46 0.00 3.02
370 371 2.516930 ATCCGCGGGCATTTCAGG 60.517 61.111 27.83 0.00 0.00 3.86
371 372 3.042733 ATCCGCGGGCATTTCAGGA 62.043 57.895 27.83 0.77 0.00 3.86
372 373 3.508840 CCGCGGGCATTTCAGGAC 61.509 66.667 20.10 0.00 0.00 3.85
373 374 3.864686 CGCGGGCATTTCAGGACG 61.865 66.667 0.00 0.00 0.00 4.79
374 375 4.179579 GCGGGCATTTCAGGACGC 62.180 66.667 0.00 0.00 40.19 5.19
375 376 3.864686 CGGGCATTTCAGGACGCG 61.865 66.667 3.53 3.53 0.00 6.01
376 377 2.746277 GGGCATTTCAGGACGCGT 60.746 61.111 13.85 13.85 0.00 6.01
377 378 2.750888 GGGCATTTCAGGACGCGTC 61.751 63.158 30.67 30.67 0.00 5.19
378 379 1.741770 GGCATTTCAGGACGCGTCT 60.742 57.895 35.50 20.42 0.00 4.18
379 380 1.421485 GCATTTCAGGACGCGTCTG 59.579 57.895 35.50 28.88 0.00 3.51
380 381 1.291877 GCATTTCAGGACGCGTCTGT 61.292 55.000 35.50 22.04 34.15 3.41
381 382 0.439985 CATTTCAGGACGCGTCTGTG 59.560 55.000 35.50 30.33 34.15 3.66
382 383 1.291877 ATTTCAGGACGCGTCTGTGC 61.292 55.000 35.50 20.66 34.15 4.57
392 393 1.409412 GCGTCTGTGCGTATAGATGG 58.591 55.000 18.37 8.70 33.18 3.51
393 394 1.409412 CGTCTGTGCGTATAGATGGC 58.591 55.000 10.91 0.00 30.04 4.40
394 395 1.784525 GTCTGTGCGTATAGATGGCC 58.215 55.000 2.90 0.00 0.00 5.36
395 396 0.313987 TCTGTGCGTATAGATGGCCG 59.686 55.000 0.00 0.00 0.00 6.13
396 397 0.667487 CTGTGCGTATAGATGGCCGG 60.667 60.000 0.00 0.00 0.00 6.13
397 398 1.110518 TGTGCGTATAGATGGCCGGA 61.111 55.000 5.05 0.00 0.00 5.14
398 399 0.246635 GTGCGTATAGATGGCCGGAT 59.753 55.000 5.05 0.00 0.00 4.18
399 400 0.973632 TGCGTATAGATGGCCGGATT 59.026 50.000 5.05 0.00 0.00 3.01
400 401 1.346395 TGCGTATAGATGGCCGGATTT 59.654 47.619 5.05 0.00 0.00 2.17
401 402 1.732259 GCGTATAGATGGCCGGATTTG 59.268 52.381 5.05 0.00 0.00 2.32
402 403 2.611971 GCGTATAGATGGCCGGATTTGA 60.612 50.000 5.05 0.00 0.00 2.69
403 404 2.993899 CGTATAGATGGCCGGATTTGAC 59.006 50.000 5.05 0.00 0.00 3.18
404 405 3.554129 CGTATAGATGGCCGGATTTGACA 60.554 47.826 5.05 0.00 0.00 3.58
405 406 3.576078 ATAGATGGCCGGATTTGACAA 57.424 42.857 5.05 0.00 0.00 3.18
406 407 2.214376 AGATGGCCGGATTTGACAAA 57.786 45.000 5.05 2.48 0.00 2.83
407 408 2.738743 AGATGGCCGGATTTGACAAAT 58.261 42.857 13.24 13.24 0.00 2.32
408 409 2.689983 AGATGGCCGGATTTGACAAATC 59.310 45.455 26.22 26.22 45.12 2.17
409 410 2.214376 TGGCCGGATTTGACAAATCT 57.786 45.000 30.39 7.24 45.17 2.40
415 416 4.542662 CGGATTTGACAAATCTGGCTAG 57.457 45.455 30.28 16.47 46.03 3.42
416 417 3.313526 CGGATTTGACAAATCTGGCTAGG 59.686 47.826 30.28 13.96 46.03 3.02
417 418 4.273318 GGATTTGACAAATCTGGCTAGGT 58.727 43.478 30.39 2.47 45.17 3.08
418 419 4.096984 GGATTTGACAAATCTGGCTAGGTG 59.903 45.833 30.39 0.00 45.17 4.00
419 420 3.788227 TTGACAAATCTGGCTAGGTGT 57.212 42.857 0.00 0.00 0.00 4.16
420 421 3.788227 TGACAAATCTGGCTAGGTGTT 57.212 42.857 0.00 0.00 0.00 3.32
421 422 3.674997 TGACAAATCTGGCTAGGTGTTC 58.325 45.455 0.00 0.00 0.00 3.18
422 423 3.327757 TGACAAATCTGGCTAGGTGTTCT 59.672 43.478 0.00 0.00 0.00 3.01
423 424 4.202461 TGACAAATCTGGCTAGGTGTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
424 425 5.012664 TGACAAATCTGGCTAGGTGTTCTTA 59.987 40.000 0.00 0.00 0.00 2.10
425 426 5.491982 ACAAATCTGGCTAGGTGTTCTTAG 58.508 41.667 0.00 0.00 0.00 2.18
426 427 4.762289 AATCTGGCTAGGTGTTCTTAGG 57.238 45.455 0.00 0.00 0.00 2.69
427 428 1.831736 TCTGGCTAGGTGTTCTTAGGC 59.168 52.381 0.00 4.51 44.77 3.93
428 429 1.834263 CTGGCTAGGTGTTCTTAGGCT 59.166 52.381 10.88 0.00 44.79 4.58
429 430 1.555075 TGGCTAGGTGTTCTTAGGCTG 59.445 52.381 0.00 0.00 44.79 4.85
430 431 1.831736 GGCTAGGTGTTCTTAGGCTGA 59.168 52.381 0.00 0.00 42.54 4.26
431 432 2.159028 GGCTAGGTGTTCTTAGGCTGAG 60.159 54.545 0.00 0.00 42.54 3.35
432 433 2.159028 GCTAGGTGTTCTTAGGCTGAGG 60.159 54.545 6.44 0.00 0.00 3.86
433 434 2.327325 AGGTGTTCTTAGGCTGAGGA 57.673 50.000 6.44 0.00 0.00 3.71
434 435 2.183679 AGGTGTTCTTAGGCTGAGGAG 58.816 52.381 6.44 0.00 0.00 3.69
435 436 1.208293 GGTGTTCTTAGGCTGAGGAGG 59.792 57.143 6.44 0.00 0.00 4.30
436 437 0.905357 TGTTCTTAGGCTGAGGAGGC 59.095 55.000 6.44 0.00 45.31 4.70
443 444 4.521062 GCTGAGGAGGCGTGCGAT 62.521 66.667 0.00 0.00 0.00 4.58
444 445 2.279120 CTGAGGAGGCGTGCGATC 60.279 66.667 0.00 0.00 0.00 3.69
445 446 3.781770 CTGAGGAGGCGTGCGATCC 62.782 68.421 6.62 6.62 0.00 3.36
446 447 4.593864 GAGGAGGCGTGCGATCCC 62.594 72.222 10.16 1.88 33.30 3.85
454 455 2.108157 GTGCGATCCCGTGGCATA 59.892 61.111 0.00 0.00 43.64 3.14
455 456 1.956170 GTGCGATCCCGTGGCATAG 60.956 63.158 0.00 0.00 43.64 2.23
456 457 2.357517 GCGATCCCGTGGCATAGG 60.358 66.667 5.14 5.14 38.24 2.57
457 458 2.867855 GCGATCCCGTGGCATAGGA 61.868 63.158 12.70 11.58 38.24 2.94
458 459 1.745890 CGATCCCGTGGCATAGGAA 59.254 57.895 11.86 0.00 32.26 3.36
459 460 0.321671 CGATCCCGTGGCATAGGAAT 59.678 55.000 11.86 0.00 32.26 3.01
460 461 1.673033 CGATCCCGTGGCATAGGAATC 60.673 57.143 11.86 6.80 32.26 2.52
461 462 0.693049 ATCCCGTGGCATAGGAATCC 59.307 55.000 11.86 0.00 32.26 3.01
462 463 1.301716 CCCGTGGCATAGGAATCCG 60.302 63.158 12.70 0.00 0.00 4.18
463 464 1.961277 CCGTGGCATAGGAATCCGC 60.961 63.158 6.14 0.00 0.00 5.54
464 465 1.069765 CGTGGCATAGGAATCCGCT 59.930 57.895 0.00 0.00 0.00 5.52
465 466 1.224069 CGTGGCATAGGAATCCGCTG 61.224 60.000 0.00 0.00 0.00 5.18
466 467 0.179045 GTGGCATAGGAATCCGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
467 468 0.179048 TGGCATAGGAATCCGCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
468 469 1.510480 GGCATAGGAATCCGCTGTGC 61.510 60.000 10.98 10.98 0.00 4.57
487 488 3.157252 AGGCATGCCCTCGATCGT 61.157 61.111 33.14 9.27 41.21 3.73
488 489 2.969238 GGCATGCCCTCGATCGTG 60.969 66.667 27.24 12.87 0.00 4.35
588 589 1.633171 CGCGCTGCACAGAATAGTC 59.367 57.895 5.56 0.00 0.00 2.59
595 596 4.248859 GCTGCACAGAATAGTCTCTTTCA 58.751 43.478 0.81 0.00 28.78 2.69
656 657 3.944055 AGACGATCACATAGGTATGGC 57.056 47.619 2.16 0.00 38.00 4.40
657 658 3.501349 AGACGATCACATAGGTATGGCT 58.499 45.455 2.16 0.00 38.00 4.75
658 659 3.256879 AGACGATCACATAGGTATGGCTG 59.743 47.826 2.16 0.00 38.00 4.85
659 660 2.289072 ACGATCACATAGGTATGGCTGC 60.289 50.000 2.16 0.00 38.00 5.25
660 661 2.341257 GATCACATAGGTATGGCTGCG 58.659 52.381 2.16 0.00 38.00 5.18
661 662 1.408969 TCACATAGGTATGGCTGCGA 58.591 50.000 2.16 0.00 38.00 5.10
662 663 1.341209 TCACATAGGTATGGCTGCGAG 59.659 52.381 2.16 0.00 38.00 5.03
663 664 0.034059 ACATAGGTATGGCTGCGAGC 59.966 55.000 2.16 0.11 41.46 5.03
682 683 1.868469 CCTACGACGAACCCAACAAA 58.132 50.000 0.00 0.00 0.00 2.83
684 685 1.190763 CTACGACGAACCCAACAAACG 59.809 52.381 0.00 0.00 0.00 3.60
685 686 1.368374 CGACGAACCCAACAAACGC 60.368 57.895 0.00 0.00 0.00 4.84
688 689 2.190841 CGAACCCAACAAACGCCCT 61.191 57.895 0.00 0.00 0.00 5.19
689 690 1.362355 GAACCCAACAAACGCCCTG 59.638 57.895 0.00 0.00 0.00 4.45
916 919 1.523154 GCTCCCAGCTCGATCGATCT 61.523 60.000 19.78 17.43 38.45 2.75
955 966 5.629079 AGTATCATCATGCATGCATCTTG 57.371 39.130 30.07 26.46 33.90 3.02
1027 1042 7.398047 TGGTTGGATTAGTAGCTGTAGTTCTTA 59.602 37.037 0.00 0.00 0.00 2.10
2073 2088 0.322975 AGCATGTCAGTCCAGTCCAC 59.677 55.000 0.00 0.00 0.00 4.02
2078 2093 0.605589 GTCAGTCCAGTCCACTCCAG 59.394 60.000 0.00 0.00 0.00 3.86
2079 2094 0.188587 TCAGTCCAGTCCACTCCAGT 59.811 55.000 0.00 0.00 0.00 4.00
2080 2095 0.605589 CAGTCCAGTCCACTCCAGTC 59.394 60.000 0.00 0.00 0.00 3.51
2081 2096 0.543174 AGTCCAGTCCACTCCAGTCC 60.543 60.000 0.00 0.00 0.00 3.85
2082 2097 0.832135 GTCCAGTCCACTCCAGTCCA 60.832 60.000 0.00 0.00 0.00 4.02
2083 2098 0.117140 TCCAGTCCACTCCAGTCCAT 59.883 55.000 0.00 0.00 0.00 3.41
2084 2099 0.539051 CCAGTCCACTCCAGTCCATC 59.461 60.000 0.00 0.00 0.00 3.51
2469 2490 4.832608 GTCCGTCCATCGCCCCAC 62.833 72.222 0.00 0.00 38.35 4.61
2536 2557 2.280445 GTGCACCGTGTAAAACAAAAGC 59.720 45.455 5.22 0.00 0.00 3.51
2546 2568 7.413548 CCGTGTAAAACAAAAGCCAAGAAAATT 60.414 33.333 0.00 0.00 0.00 1.82
2636 2658 1.692173 TTCACCGGTAGCCTATGCCC 61.692 60.000 6.87 0.00 38.69 5.36
2637 2659 2.140792 CACCGGTAGCCTATGCCCT 61.141 63.158 6.87 0.00 38.69 5.19
2679 2707 7.056522 TGGATAGATAGATAGATTCACCCCA 57.943 40.000 0.00 0.00 0.00 4.96
2806 2841 5.138276 ACTCACTGTCAGGTTCTGTAACTA 58.862 41.667 4.53 0.00 35.81 2.24
2833 2868 3.079131 TGAATGTATCAGCGGCACC 57.921 52.632 1.45 0.00 33.04 5.01
2834 2869 0.251634 TGAATGTATCAGCGGCACCA 59.748 50.000 1.45 0.00 33.04 4.17
2835 2870 0.940126 GAATGTATCAGCGGCACCAG 59.060 55.000 1.45 0.00 0.00 4.00
2836 2871 1.097547 AATGTATCAGCGGCACCAGC 61.098 55.000 1.45 0.00 41.10 4.85
2865 2900 1.641677 CCGCGTTTCGAATGGATCC 59.358 57.895 4.20 4.20 41.67 3.36
2873 2908 1.958205 CGAATGGATCCTGAGCCGC 60.958 63.158 14.23 0.00 40.42 6.53
2901 2936 1.271102 GCATCTAACGGCTCTCCTAGG 59.729 57.143 0.82 0.82 0.00 3.02
2906 2941 2.055684 AACGGCTCTCCTAGGTAGAC 57.944 55.000 9.08 9.09 0.00 2.59
2920 2955 0.963962 GTAGACACCGGTTCACCTCA 59.036 55.000 2.97 0.00 0.00 3.86
2938 2973 4.217118 ACCTCATGAGCATCTTTGTCAAAC 59.783 41.667 17.76 0.00 34.92 2.93
2941 2976 3.878086 TGAGCATCTTTGTCAAACGTC 57.122 42.857 0.00 0.00 34.92 4.34
2948 2983 4.446857 TCTTTGTCAAACGTCGATCAAC 57.553 40.909 0.00 0.00 0.00 3.18
2999 3034 2.983030 GTTGCCCCGTCATGCACA 60.983 61.111 0.00 0.00 37.18 4.57
3013 3048 5.860182 CGTCATGCACATTTTCTTCTTTCAT 59.140 36.000 0.00 0.00 0.00 2.57
3014 3049 6.364165 CGTCATGCACATTTTCTTCTTTCATT 59.636 34.615 0.00 0.00 0.00 2.57
3028 3063 8.166422 TCTTCTTTCATTCTTACTTTTCACCC 57.834 34.615 0.00 0.00 0.00 4.61
3034 3069 1.975680 TCTTACTTTTCACCCGCTCCT 59.024 47.619 0.00 0.00 0.00 3.69
3047 3082 0.451783 CGCTCCTTGTTGTAATGGCC 59.548 55.000 0.00 0.00 0.00 5.36
3094 3129 4.895889 TCCGAGACCATCTTGATGTAATCT 59.104 41.667 9.41 8.73 45.81 2.40
3136 3171 2.412089 GTGGCAAGCTACAGTACTTTCG 59.588 50.000 3.54 0.00 0.00 3.46
3142 3177 1.725164 GCTACAGTACTTTCGTGCACC 59.275 52.381 12.15 0.00 0.00 5.01
3147 3182 2.612212 CAGTACTTTCGTGCACCAGTTT 59.388 45.455 12.15 1.04 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.559170 TGGTATTGAGTCTAACCTAGGTTCTAC 59.441 40.741 30.38 25.89 39.31 2.59
1 2 7.645942 TGGTATTGAGTCTAACCTAGGTTCTA 58.354 38.462 30.38 16.72 39.31 2.10
2 3 6.500336 TGGTATTGAGTCTAACCTAGGTTCT 58.500 40.000 30.38 20.88 39.31 3.01
3 4 6.786967 TGGTATTGAGTCTAACCTAGGTTC 57.213 41.667 30.38 16.45 39.31 3.62
4 5 6.672657 ACATGGTATTGAGTCTAACCTAGGTT 59.327 38.462 29.46 29.46 41.65 3.50
5 6 6.203072 ACATGGTATTGAGTCTAACCTAGGT 58.797 40.000 9.21 9.21 32.99 3.08
6 7 6.732896 ACATGGTATTGAGTCTAACCTAGG 57.267 41.667 7.41 7.41 32.99 3.02
8 9 9.880157 GTTTTACATGGTATTGAGTCTAACCTA 57.120 33.333 0.00 0.00 32.99 3.08
9 10 8.380099 TGTTTTACATGGTATTGAGTCTAACCT 58.620 33.333 0.00 0.00 32.99 3.50
10 11 8.556213 TGTTTTACATGGTATTGAGTCTAACC 57.444 34.615 0.00 0.00 0.00 2.85
14 15 8.548877 ACCTATGTTTTACATGGTATTGAGTCT 58.451 33.333 0.00 0.00 39.53 3.24
15 16 8.732746 ACCTATGTTTTACATGGTATTGAGTC 57.267 34.615 0.00 0.00 39.53 3.36
16 17 9.528489 AAACCTATGTTTTACATGGTATTGAGT 57.472 29.630 0.00 0.00 41.92 3.41
31 32 4.832823 CAGTTCCTCCCAAAACCTATGTTT 59.167 41.667 0.00 0.00 46.50 2.83
32 33 4.407365 CAGTTCCTCCCAAAACCTATGTT 58.593 43.478 0.00 0.00 35.82 2.71
33 34 3.245264 CCAGTTCCTCCCAAAACCTATGT 60.245 47.826 0.00 0.00 0.00 2.29
34 35 3.356290 CCAGTTCCTCCCAAAACCTATG 58.644 50.000 0.00 0.00 0.00 2.23
35 36 2.291605 GCCAGTTCCTCCCAAAACCTAT 60.292 50.000 0.00 0.00 0.00 2.57
36 37 1.074889 GCCAGTTCCTCCCAAAACCTA 59.925 52.381 0.00 0.00 0.00 3.08
37 38 0.178961 GCCAGTTCCTCCCAAAACCT 60.179 55.000 0.00 0.00 0.00 3.50
38 39 1.185618 GGCCAGTTCCTCCCAAAACC 61.186 60.000 0.00 0.00 0.00 3.27
39 40 1.185618 GGGCCAGTTCCTCCCAAAAC 61.186 60.000 4.39 0.00 39.82 2.43
40 41 1.155155 GGGCCAGTTCCTCCCAAAA 59.845 57.895 4.39 0.00 39.82 2.44
41 42 2.851045 GGGCCAGTTCCTCCCAAA 59.149 61.111 4.39 0.00 39.82 3.28
42 43 3.646715 CGGGCCAGTTCCTCCCAA 61.647 66.667 4.39 0.00 40.05 4.12
43 44 4.649705 TCGGGCCAGTTCCTCCCA 62.650 66.667 4.39 0.00 40.05 4.37
44 45 4.097361 GTCGGGCCAGTTCCTCCC 62.097 72.222 4.39 0.00 36.68 4.30
45 46 4.097361 GGTCGGGCCAGTTCCTCC 62.097 72.222 4.39 0.00 37.17 4.30
46 47 4.097361 GGGTCGGGCCAGTTCCTC 62.097 72.222 4.39 0.00 39.65 3.71
47 48 4.658786 AGGGTCGGGCCAGTTCCT 62.659 66.667 4.39 9.52 39.65 3.36
48 49 4.097361 GAGGGTCGGGCCAGTTCC 62.097 72.222 4.39 8.19 39.65 3.62
49 50 1.049289 ATAGAGGGTCGGGCCAGTTC 61.049 60.000 4.39 0.00 39.65 3.01
50 51 1.003051 ATAGAGGGTCGGGCCAGTT 59.997 57.895 4.39 0.00 39.65 3.16
51 52 1.762460 CATAGAGGGTCGGGCCAGT 60.762 63.158 4.39 0.00 39.65 4.00
52 53 2.511452 CCATAGAGGGTCGGGCCAG 61.511 68.421 4.39 0.00 39.65 4.85
53 54 2.445845 CCATAGAGGGTCGGGCCA 60.446 66.667 4.39 0.00 39.65 5.36
62 63 2.503356 GTGATAGGCCATCCCATAGAGG 59.497 54.545 5.01 0.00 35.39 3.69
63 64 3.176411 TGTGATAGGCCATCCCATAGAG 58.824 50.000 5.01 0.00 35.39 2.43
64 65 3.274281 TGTGATAGGCCATCCCATAGA 57.726 47.619 5.01 0.00 35.39 1.98
65 66 4.718774 AGTATGTGATAGGCCATCCCATAG 59.281 45.833 5.01 0.00 35.46 2.23
66 67 4.698895 AGTATGTGATAGGCCATCCCATA 58.301 43.478 5.01 10.41 34.14 2.74
67 68 3.535239 AGTATGTGATAGGCCATCCCAT 58.465 45.455 5.01 11.38 36.02 4.00
68 69 2.990195 AGTATGTGATAGGCCATCCCA 58.010 47.619 5.01 4.10 35.39 4.37
69 70 3.307762 GGAAGTATGTGATAGGCCATCCC 60.308 52.174 5.01 0.00 32.09 3.85
70 71 3.584848 AGGAAGTATGTGATAGGCCATCC 59.415 47.826 5.01 1.66 32.09 3.51
71 72 4.323104 GGAGGAAGTATGTGATAGGCCATC 60.323 50.000 5.01 6.88 0.00 3.51
72 73 3.584848 GGAGGAAGTATGTGATAGGCCAT 59.415 47.826 5.01 0.00 0.00 4.40
73 74 2.972713 GGAGGAAGTATGTGATAGGCCA 59.027 50.000 5.01 0.00 0.00 5.36
74 75 2.028930 CGGAGGAAGTATGTGATAGGCC 60.029 54.545 0.00 0.00 0.00 5.19
75 76 2.628657 ACGGAGGAAGTATGTGATAGGC 59.371 50.000 0.00 0.00 0.00 3.93
76 77 4.145807 AGACGGAGGAAGTATGTGATAGG 58.854 47.826 0.00 0.00 0.00 2.57
77 78 6.231951 TCTAGACGGAGGAAGTATGTGATAG 58.768 44.000 0.00 0.00 0.00 2.08
78 79 6.183810 TCTAGACGGAGGAAGTATGTGATA 57.816 41.667 0.00 0.00 0.00 2.15
79 80 5.050126 TCTAGACGGAGGAAGTATGTGAT 57.950 43.478 0.00 0.00 0.00 3.06
80 81 4.498894 TCTAGACGGAGGAAGTATGTGA 57.501 45.455 0.00 0.00 0.00 3.58
81 82 5.578005 TTTCTAGACGGAGGAAGTATGTG 57.422 43.478 0.00 0.00 0.00 3.21
82 83 8.480133 AATATTTCTAGACGGAGGAAGTATGT 57.520 34.615 0.00 0.00 0.00 2.29
83 84 9.197694 CAAATATTTCTAGACGGAGGAAGTATG 57.802 37.037 0.00 0.00 0.00 2.39
84 85 8.925338 ACAAATATTTCTAGACGGAGGAAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
85 86 8.302515 ACAAATATTTCTAGACGGAGGAAGTA 57.697 34.615 0.00 0.00 0.00 2.24
86 87 7.184067 ACAAATATTTCTAGACGGAGGAAGT 57.816 36.000 0.00 0.00 0.00 3.01
87 88 6.702282 GGACAAATATTTCTAGACGGAGGAAG 59.298 42.308 0.00 0.00 0.00 3.46
88 89 6.383147 AGGACAAATATTTCTAGACGGAGGAA 59.617 38.462 0.00 0.00 0.00 3.36
89 90 5.897824 AGGACAAATATTTCTAGACGGAGGA 59.102 40.000 0.00 0.00 0.00 3.71
90 91 6.163135 AGGACAAATATTTCTAGACGGAGG 57.837 41.667 0.00 0.00 0.00 4.30
91 92 8.167605 TCTAGGACAAATATTTCTAGACGGAG 57.832 38.462 15.86 0.00 33.65 4.63
92 93 8.529424 TTCTAGGACAAATATTTCTAGACGGA 57.471 34.615 18.07 7.44 36.96 4.69
93 94 9.765795 ATTTCTAGGACAAATATTTCTAGACGG 57.234 33.333 18.07 2.49 36.96 4.79
107 108 8.673711 CGTCCATTTTATTCATTTCTAGGACAA 58.326 33.333 0.00 0.00 41.29 3.18
108 109 7.827236 ACGTCCATTTTATTCATTTCTAGGACA 59.173 33.333 0.00 0.00 41.29 4.02
109 110 8.209917 ACGTCCATTTTATTCATTTCTAGGAC 57.790 34.615 0.00 0.00 38.66 3.85
149 150 9.931698 TCCTAGAAATGGTTGTATCTAGACTTA 57.068 33.333 9.60 0.00 42.48 2.24
150 151 8.840200 TCCTAGAAATGGTTGTATCTAGACTT 57.160 34.615 9.60 0.00 42.48 3.01
166 167 9.338622 CCGTCCAAAAATACTTATCCTAGAAAT 57.661 33.333 0.00 0.00 0.00 2.17
167 168 8.542080 TCCGTCCAAAAATACTTATCCTAGAAA 58.458 33.333 0.00 0.00 0.00 2.52
168 169 8.081517 TCCGTCCAAAAATACTTATCCTAGAA 57.918 34.615 0.00 0.00 0.00 2.10
169 170 7.201974 CCTCCGTCCAAAAATACTTATCCTAGA 60.202 40.741 0.00 0.00 0.00 2.43
170 171 6.929606 CCTCCGTCCAAAAATACTTATCCTAG 59.070 42.308 0.00 0.00 0.00 3.02
171 172 6.183361 CCCTCCGTCCAAAAATACTTATCCTA 60.183 42.308 0.00 0.00 0.00 2.94
172 173 5.397559 CCCTCCGTCCAAAAATACTTATCCT 60.398 44.000 0.00 0.00 0.00 3.24
173 174 4.820173 CCCTCCGTCCAAAAATACTTATCC 59.180 45.833 0.00 0.00 0.00 2.59
174 175 5.677567 TCCCTCCGTCCAAAAATACTTATC 58.322 41.667 0.00 0.00 0.00 1.75
175 176 5.191124 ACTCCCTCCGTCCAAAAATACTTAT 59.809 40.000 0.00 0.00 0.00 1.73
176 177 4.533311 ACTCCCTCCGTCCAAAAATACTTA 59.467 41.667 0.00 0.00 0.00 2.24
177 178 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
178 179 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
179 180 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
180 181 8.674925 ATATATACTCCCTCCGTCCAAAAATA 57.325 34.615 0.00 0.00 0.00 1.40
181 182 5.906772 ATATACTCCCTCCGTCCAAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
182 183 8.495160 TTATATATACTCCCTCCGTCCAAAAA 57.505 34.615 0.00 0.00 0.00 1.94
183 184 8.537016 CATTATATATACTCCCTCCGTCCAAAA 58.463 37.037 0.00 0.00 0.00 2.44
184 185 7.897030 TCATTATATATACTCCCTCCGTCCAAA 59.103 37.037 0.00 0.00 0.00 3.28
185 186 7.415908 TCATTATATATACTCCCTCCGTCCAA 58.584 38.462 0.00 0.00 0.00 3.53
186 187 6.977104 TCATTATATATACTCCCTCCGTCCA 58.023 40.000 0.00 0.00 0.00 4.02
187 188 7.506261 ACATCATTATATATACTCCCTCCGTCC 59.494 40.741 0.00 0.00 0.00 4.79
188 189 8.466617 ACATCATTATATATACTCCCTCCGTC 57.533 38.462 0.00 0.00 0.00 4.79
189 190 8.059461 TGACATCATTATATATACTCCCTCCGT 58.941 37.037 0.00 0.00 0.00 4.69
190 191 8.465273 TGACATCATTATATATACTCCCTCCG 57.535 38.462 0.00 0.00 0.00 4.63
204 205 8.103305 GGTATGGGACTTGTATGACATCATTAT 58.897 37.037 0.00 0.00 37.76 1.28
205 206 7.071824 TGGTATGGGACTTGTATGACATCATTA 59.928 37.037 0.00 0.00 37.76 1.90
206 207 6.126507 TGGTATGGGACTTGTATGACATCATT 60.127 38.462 0.00 0.00 37.76 2.57
207 208 5.369404 TGGTATGGGACTTGTATGACATCAT 59.631 40.000 0.00 0.00 40.22 2.45
208 209 4.719273 TGGTATGGGACTTGTATGACATCA 59.281 41.667 0.00 0.00 0.00 3.07
209 210 5.290493 TGGTATGGGACTTGTATGACATC 57.710 43.478 0.00 0.00 0.00 3.06
210 211 5.708736 TTGGTATGGGACTTGTATGACAT 57.291 39.130 0.00 0.00 0.00 3.06
211 212 5.708736 ATTGGTATGGGACTTGTATGACA 57.291 39.130 0.00 0.00 0.00 3.58
212 213 7.672983 CATATTGGTATGGGACTTGTATGAC 57.327 40.000 0.00 0.00 35.16 3.06
229 230 9.567776 TTTACTGTGTAATCCATACCATATTGG 57.432 33.333 0.00 0.00 45.02 3.16
234 235 9.609346 GTAGTTTTACTGTGTAATCCATACCAT 57.391 33.333 0.00 0.00 33.27 3.55
235 236 8.595421 TGTAGTTTTACTGTGTAATCCATACCA 58.405 33.333 0.00 0.00 33.27 3.25
236 237 9.439500 TTGTAGTTTTACTGTGTAATCCATACC 57.561 33.333 0.00 0.00 33.27 2.73
240 241 9.142515 CGTATTGTAGTTTTACTGTGTAATCCA 57.857 33.333 0.00 0.00 0.00 3.41
241 242 9.357652 TCGTATTGTAGTTTTACTGTGTAATCC 57.642 33.333 0.00 0.00 0.00 3.01
244 245 9.748708 ACTTCGTATTGTAGTTTTACTGTGTAA 57.251 29.630 0.00 0.00 0.00 2.41
245 246 9.748708 AACTTCGTATTGTAGTTTTACTGTGTA 57.251 29.630 0.00 0.00 34.91 2.90
246 247 8.652810 AACTTCGTATTGTAGTTTTACTGTGT 57.347 30.769 0.00 0.00 34.91 3.72
256 257 9.872757 CAAATGTGTTAAACTTCGTATTGTAGT 57.127 29.630 0.00 0.00 0.00 2.73
257 258 8.837059 GCAAATGTGTTAAACTTCGTATTGTAG 58.163 33.333 0.00 0.00 0.00 2.74
258 259 8.343366 TGCAAATGTGTTAAACTTCGTATTGTA 58.657 29.630 0.00 0.00 0.00 2.41
259 260 7.197017 TGCAAATGTGTTAAACTTCGTATTGT 58.803 30.769 0.00 0.00 0.00 2.71
260 261 7.616103 TGCAAATGTGTTAAACTTCGTATTG 57.384 32.000 0.00 0.00 0.00 1.90
261 262 8.079203 TCATGCAAATGTGTTAAACTTCGTATT 58.921 29.630 0.00 0.00 0.00 1.89
262 263 7.589395 TCATGCAAATGTGTTAAACTTCGTAT 58.411 30.769 0.00 0.00 0.00 3.06
263 264 6.960468 TCATGCAAATGTGTTAAACTTCGTA 58.040 32.000 0.00 0.00 0.00 3.43
264 265 5.826586 TCATGCAAATGTGTTAAACTTCGT 58.173 33.333 0.00 0.00 0.00 3.85
265 266 6.932901 ATCATGCAAATGTGTTAAACTTCG 57.067 33.333 0.00 0.00 0.00 3.79
266 267 9.372541 CAAAATCATGCAAATGTGTTAAACTTC 57.627 29.630 0.00 0.00 0.00 3.01
267 268 9.107177 TCAAAATCATGCAAATGTGTTAAACTT 57.893 25.926 0.00 0.00 0.00 2.66
268 269 8.659925 TCAAAATCATGCAAATGTGTTAAACT 57.340 26.923 0.00 0.00 0.00 2.66
269 270 8.763356 TCTCAAAATCATGCAAATGTGTTAAAC 58.237 29.630 0.00 0.00 0.00 2.01
270 271 8.883954 TCTCAAAATCATGCAAATGTGTTAAA 57.116 26.923 0.00 0.00 0.00 1.52
271 272 8.883954 TTCTCAAAATCATGCAAATGTGTTAA 57.116 26.923 0.00 0.00 0.00 2.01
272 273 9.142515 GATTCTCAAAATCATGCAAATGTGTTA 57.857 29.630 0.00 0.00 0.00 2.41
273 274 7.118680 GGATTCTCAAAATCATGCAAATGTGTT 59.881 33.333 0.00 0.00 0.00 3.32
274 275 6.592607 GGATTCTCAAAATCATGCAAATGTGT 59.407 34.615 0.00 0.00 0.00 3.72
275 276 6.237728 CGGATTCTCAAAATCATGCAAATGTG 60.238 38.462 0.00 0.00 0.00 3.21
276 277 5.808540 CGGATTCTCAAAATCATGCAAATGT 59.191 36.000 0.00 0.00 0.00 2.71
277 278 5.233476 CCGGATTCTCAAAATCATGCAAATG 59.767 40.000 0.00 0.00 0.00 2.32
278 279 5.127519 TCCGGATTCTCAAAATCATGCAAAT 59.872 36.000 0.00 0.00 0.00 2.32
279 280 4.462132 TCCGGATTCTCAAAATCATGCAAA 59.538 37.500 0.00 0.00 0.00 3.68
280 281 4.015764 TCCGGATTCTCAAAATCATGCAA 58.984 39.130 0.00 0.00 0.00 4.08
281 282 3.619419 TCCGGATTCTCAAAATCATGCA 58.381 40.909 0.00 0.00 0.00 3.96
282 283 4.843220 ATCCGGATTCTCAAAATCATGC 57.157 40.909 12.38 0.00 0.00 4.06
283 284 6.798482 TCAAATCCGGATTCTCAAAATCATG 58.202 36.000 29.32 18.75 0.00 3.07
284 285 6.830324 TCTCAAATCCGGATTCTCAAAATCAT 59.170 34.615 29.32 7.50 0.00 2.45
285 286 6.179756 TCTCAAATCCGGATTCTCAAAATCA 58.820 36.000 29.32 0.00 0.00 2.57
286 287 6.683974 TCTCAAATCCGGATTCTCAAAATC 57.316 37.500 29.32 0.00 0.00 2.17
287 288 8.790718 CATATCTCAAATCCGGATTCTCAAAAT 58.209 33.333 29.32 18.71 0.00 1.82
288 289 7.775093 ACATATCTCAAATCCGGATTCTCAAAA 59.225 33.333 29.32 14.55 0.00 2.44
289 290 7.227314 CACATATCTCAAATCCGGATTCTCAAA 59.773 37.037 29.32 14.55 0.00 2.69
290 291 6.707608 CACATATCTCAAATCCGGATTCTCAA 59.292 38.462 29.32 15.90 0.00 3.02
291 292 6.226052 CACATATCTCAAATCCGGATTCTCA 58.774 40.000 29.32 14.99 0.00 3.27
292 293 5.641209 CCACATATCTCAAATCCGGATTCTC 59.359 44.000 29.32 0.00 0.00 2.87
293 294 5.307976 TCCACATATCTCAAATCCGGATTCT 59.692 40.000 29.32 16.53 0.00 2.40
294 295 5.551233 TCCACATATCTCAAATCCGGATTC 58.449 41.667 29.32 0.00 0.00 2.52
295 296 5.567037 TCCACATATCTCAAATCCGGATT 57.433 39.130 24.27 24.27 0.00 3.01
296 297 5.494724 CATCCACATATCTCAAATCCGGAT 58.505 41.667 12.38 12.38 0.00 4.18
297 298 4.803924 GCATCCACATATCTCAAATCCGGA 60.804 45.833 6.61 6.61 0.00 5.14
298 299 3.438087 GCATCCACATATCTCAAATCCGG 59.562 47.826 0.00 0.00 0.00 5.14
299 300 3.438087 GGCATCCACATATCTCAAATCCG 59.562 47.826 0.00 0.00 0.00 4.18
300 301 3.438087 CGGCATCCACATATCTCAAATCC 59.562 47.826 0.00 0.00 0.00 3.01
301 302 3.438087 CCGGCATCCACATATCTCAAATC 59.562 47.826 0.00 0.00 0.00 2.17
302 303 3.072915 TCCGGCATCCACATATCTCAAAT 59.927 43.478 0.00 0.00 0.00 2.32
303 304 2.437651 TCCGGCATCCACATATCTCAAA 59.562 45.455 0.00 0.00 0.00 2.69
304 305 2.046292 TCCGGCATCCACATATCTCAA 58.954 47.619 0.00 0.00 0.00 3.02
305 306 1.344438 GTCCGGCATCCACATATCTCA 59.656 52.381 0.00 0.00 0.00 3.27
306 307 1.344438 TGTCCGGCATCCACATATCTC 59.656 52.381 0.00 0.00 0.00 2.75
307 308 1.070758 GTGTCCGGCATCCACATATCT 59.929 52.381 0.00 0.00 0.00 1.98
308 309 1.202639 TGTGTCCGGCATCCACATATC 60.203 52.381 0.00 0.00 34.37 1.63
309 310 0.836606 TGTGTCCGGCATCCACATAT 59.163 50.000 0.00 0.00 34.37 1.78
310 311 0.615850 TTGTGTCCGGCATCCACATA 59.384 50.000 14.09 1.96 38.75 2.29
311 312 0.677731 CTTGTGTCCGGCATCCACAT 60.678 55.000 14.09 0.00 38.75 3.21
312 313 1.302431 CTTGTGTCCGGCATCCACA 60.302 57.895 0.00 4.17 37.32 4.17
313 314 0.392998 ATCTTGTGTCCGGCATCCAC 60.393 55.000 0.00 1.19 0.00 4.02
314 315 1.199615 TATCTTGTGTCCGGCATCCA 58.800 50.000 0.00 0.00 0.00 3.41
315 316 2.146342 CATATCTTGTGTCCGGCATCC 58.854 52.381 0.00 0.00 0.00 3.51
316 317 3.062763 CTCATATCTTGTGTCCGGCATC 58.937 50.000 0.00 0.00 0.00 3.91
317 318 2.700371 TCTCATATCTTGTGTCCGGCAT 59.300 45.455 0.00 0.00 0.00 4.40
318 319 2.107366 TCTCATATCTTGTGTCCGGCA 58.893 47.619 0.00 0.00 0.00 5.69
319 320 2.866762 GTTCTCATATCTTGTGTCCGGC 59.133 50.000 0.00 0.00 0.00 6.13
320 321 3.458189 GGTTCTCATATCTTGTGTCCGG 58.542 50.000 0.00 0.00 0.00 5.14
321 322 3.458189 GGGTTCTCATATCTTGTGTCCG 58.542 50.000 0.00 0.00 0.00 4.79
322 323 3.118738 ACGGGTTCTCATATCTTGTGTCC 60.119 47.826 0.00 0.00 0.00 4.02
323 324 4.113354 GACGGGTTCTCATATCTTGTGTC 58.887 47.826 0.00 0.00 0.00 3.67
324 325 3.118738 GGACGGGTTCTCATATCTTGTGT 60.119 47.826 0.00 0.00 0.00 3.72
325 326 3.458189 GGACGGGTTCTCATATCTTGTG 58.542 50.000 0.00 0.00 0.00 3.33
326 327 2.100916 CGGACGGGTTCTCATATCTTGT 59.899 50.000 0.00 0.00 0.00 3.16
327 328 2.545952 CCGGACGGGTTCTCATATCTTG 60.546 54.545 0.00 0.00 0.00 3.02
328 329 1.687123 CCGGACGGGTTCTCATATCTT 59.313 52.381 0.00 0.00 0.00 2.40
329 330 1.133575 TCCGGACGGGTTCTCATATCT 60.134 52.381 11.27 0.00 37.00 1.98
330 331 1.325355 TCCGGACGGGTTCTCATATC 58.675 55.000 11.27 0.00 37.00 1.63
331 332 1.618837 CATCCGGACGGGTTCTCATAT 59.381 52.381 6.12 0.00 37.00 1.78
332 333 1.037493 CATCCGGACGGGTTCTCATA 58.963 55.000 6.12 0.00 37.00 2.15
333 334 1.823295 CATCCGGACGGGTTCTCAT 59.177 57.895 6.12 0.00 37.00 2.90
334 335 3.014085 GCATCCGGACGGGTTCTCA 62.014 63.158 6.12 0.00 37.00 3.27
335 336 2.202892 GCATCCGGACGGGTTCTC 60.203 66.667 6.12 0.00 37.00 2.87
336 337 2.311688 GATGCATCCGGACGGGTTCT 62.312 60.000 16.23 0.00 37.00 3.01
337 338 1.887707 GATGCATCCGGACGGGTTC 60.888 63.158 16.23 0.00 37.00 3.62
338 339 2.189521 GATGCATCCGGACGGGTT 59.810 61.111 16.23 0.00 37.00 4.11
339 340 3.861797 GGATGCATCCGGACGGGT 61.862 66.667 29.34 0.00 37.19 5.28
348 349 2.737932 GAAATGCCCGCGGATGCATC 62.738 60.000 32.72 22.55 46.97 3.91
350 351 3.517140 GAAATGCCCGCGGATGCA 61.517 61.111 30.73 28.81 42.97 3.96
351 352 3.474230 CTGAAATGCCCGCGGATGC 62.474 63.158 30.73 23.57 37.91 3.91
352 353 2.717485 CTGAAATGCCCGCGGATG 59.283 61.111 30.73 12.70 0.00 3.51
353 354 2.516930 CCTGAAATGCCCGCGGAT 60.517 61.111 30.73 10.80 0.00 4.18
354 355 3.711814 TCCTGAAATGCCCGCGGA 61.712 61.111 30.73 8.21 0.00 5.54
355 356 3.508840 GTCCTGAAATGCCCGCGG 61.509 66.667 21.04 21.04 0.00 6.46
356 357 3.864686 CGTCCTGAAATGCCCGCG 61.865 66.667 0.00 0.00 0.00 6.46
357 358 4.179579 GCGTCCTGAAATGCCCGC 62.180 66.667 0.00 0.00 0.00 6.13
358 359 3.864686 CGCGTCCTGAAATGCCCG 61.865 66.667 0.00 0.00 0.00 6.13
359 360 2.746277 ACGCGTCCTGAAATGCCC 60.746 61.111 5.58 0.00 0.00 5.36
360 361 1.741770 AGACGCGTCCTGAAATGCC 60.742 57.895 34.08 7.42 0.00 4.40
361 362 1.291877 ACAGACGCGTCCTGAAATGC 61.292 55.000 34.08 8.23 35.69 3.56
362 363 0.439985 CACAGACGCGTCCTGAAATG 59.560 55.000 34.08 25.66 35.69 2.32
363 364 1.291877 GCACAGACGCGTCCTGAAAT 61.292 55.000 34.08 13.29 35.69 2.17
364 365 1.954146 GCACAGACGCGTCCTGAAA 60.954 57.895 34.08 0.00 35.69 2.69
365 366 2.355837 GCACAGACGCGTCCTGAA 60.356 61.111 34.08 0.00 35.69 3.02
373 374 1.409412 CCATCTATACGCACAGACGC 58.591 55.000 0.00 0.00 36.19 5.19
374 375 1.409412 GCCATCTATACGCACAGACG 58.591 55.000 0.00 0.00 39.50 4.18
375 376 1.784525 GGCCATCTATACGCACAGAC 58.215 55.000 0.00 0.00 0.00 3.51
376 377 0.313987 CGGCCATCTATACGCACAGA 59.686 55.000 2.24 0.00 0.00 3.41
377 378 0.667487 CCGGCCATCTATACGCACAG 60.667 60.000 2.24 0.00 0.00 3.66
378 379 1.110518 TCCGGCCATCTATACGCACA 61.111 55.000 2.24 0.00 0.00 4.57
379 380 0.246635 ATCCGGCCATCTATACGCAC 59.753 55.000 2.24 0.00 0.00 5.34
380 381 0.973632 AATCCGGCCATCTATACGCA 59.026 50.000 2.24 0.00 0.00 5.24
381 382 1.732259 CAAATCCGGCCATCTATACGC 59.268 52.381 2.24 0.00 0.00 4.42
382 383 2.993899 GTCAAATCCGGCCATCTATACG 59.006 50.000 2.24 0.00 0.00 3.06
383 384 4.002906 TGTCAAATCCGGCCATCTATAC 57.997 45.455 2.24 0.00 0.00 1.47
384 385 4.698201 TTGTCAAATCCGGCCATCTATA 57.302 40.909 2.24 0.00 0.00 1.31
385 386 3.576078 TTGTCAAATCCGGCCATCTAT 57.424 42.857 2.24 0.00 0.00 1.98
386 387 3.358111 TTTGTCAAATCCGGCCATCTA 57.642 42.857 2.24 0.00 0.00 1.98
387 388 2.214376 TTTGTCAAATCCGGCCATCT 57.786 45.000 2.24 0.00 0.00 2.90
388 389 2.689983 AGATTTGTCAAATCCGGCCATC 59.310 45.455 27.30 8.49 46.65 3.51
389 390 2.428171 CAGATTTGTCAAATCCGGCCAT 59.572 45.455 27.30 10.97 46.65 4.40
390 391 1.818060 CAGATTTGTCAAATCCGGCCA 59.182 47.619 27.30 0.00 46.65 5.36
391 392 1.134946 CCAGATTTGTCAAATCCGGCC 59.865 52.381 27.30 9.53 46.65 6.13
392 393 2.566952 CCAGATTTGTCAAATCCGGC 57.433 50.000 27.30 9.85 46.65 6.13
393 394 2.094675 AGCCAGATTTGTCAAATCCGG 58.905 47.619 26.58 26.58 46.65 5.14
394 395 3.313526 CCTAGCCAGATTTGTCAAATCCG 59.686 47.826 27.30 20.19 46.65 4.18
395 396 4.096984 CACCTAGCCAGATTTGTCAAATCC 59.903 45.833 27.30 16.24 46.65 3.01
396 397 4.702131 ACACCTAGCCAGATTTGTCAAATC 59.298 41.667 24.84 24.84 45.98 2.17
397 398 4.666512 ACACCTAGCCAGATTTGTCAAAT 58.333 39.130 10.63 10.63 0.00 2.32
398 399 4.098914 ACACCTAGCCAGATTTGTCAAA 57.901 40.909 0.00 0.00 0.00 2.69
399 400 3.788227 ACACCTAGCCAGATTTGTCAA 57.212 42.857 0.00 0.00 0.00 3.18
400 401 3.327757 AGAACACCTAGCCAGATTTGTCA 59.672 43.478 0.00 0.00 0.00 3.58
401 402 3.944087 AGAACACCTAGCCAGATTTGTC 58.056 45.455 0.00 0.00 0.00 3.18
402 403 4.373156 AAGAACACCTAGCCAGATTTGT 57.627 40.909 0.00 0.00 0.00 2.83
403 404 4.878397 CCTAAGAACACCTAGCCAGATTTG 59.122 45.833 0.00 0.00 0.00 2.32
404 405 4.626529 GCCTAAGAACACCTAGCCAGATTT 60.627 45.833 0.00 0.00 0.00 2.17
405 406 3.118223 GCCTAAGAACACCTAGCCAGATT 60.118 47.826 0.00 0.00 0.00 2.40
406 407 2.436173 GCCTAAGAACACCTAGCCAGAT 59.564 50.000 0.00 0.00 0.00 2.90
407 408 1.831736 GCCTAAGAACACCTAGCCAGA 59.168 52.381 0.00 0.00 0.00 3.86
408 409 1.834263 AGCCTAAGAACACCTAGCCAG 59.166 52.381 0.00 0.00 0.00 4.85
409 410 1.555075 CAGCCTAAGAACACCTAGCCA 59.445 52.381 0.00 0.00 0.00 4.75
410 411 1.831736 TCAGCCTAAGAACACCTAGCC 59.168 52.381 0.00 0.00 0.00 3.93
411 412 2.159028 CCTCAGCCTAAGAACACCTAGC 60.159 54.545 0.00 0.00 0.00 3.42
412 413 3.366396 TCCTCAGCCTAAGAACACCTAG 58.634 50.000 0.00 0.00 0.00 3.02
413 414 3.366396 CTCCTCAGCCTAAGAACACCTA 58.634 50.000 0.00 0.00 0.00 3.08
414 415 2.183679 CTCCTCAGCCTAAGAACACCT 58.816 52.381 0.00 0.00 0.00 4.00
415 416 1.208293 CCTCCTCAGCCTAAGAACACC 59.792 57.143 0.00 0.00 0.00 4.16
416 417 1.406205 GCCTCCTCAGCCTAAGAACAC 60.406 57.143 0.00 0.00 0.00 3.32
417 418 0.905357 GCCTCCTCAGCCTAAGAACA 59.095 55.000 0.00 0.00 0.00 3.18
418 419 0.179097 CGCCTCCTCAGCCTAAGAAC 60.179 60.000 0.00 0.00 0.00 3.01
419 420 0.614979 ACGCCTCCTCAGCCTAAGAA 60.615 55.000 0.00 0.00 0.00 2.52
420 421 1.000486 ACGCCTCCTCAGCCTAAGA 60.000 57.895 0.00 0.00 0.00 2.10
421 422 1.142748 CACGCCTCCTCAGCCTAAG 59.857 63.158 0.00 0.00 0.00 2.18
422 423 3.019003 GCACGCCTCCTCAGCCTAA 62.019 63.158 0.00 0.00 0.00 2.69
423 424 3.461773 GCACGCCTCCTCAGCCTA 61.462 66.667 0.00 0.00 0.00 3.93
426 427 4.521062 ATCGCACGCCTCCTCAGC 62.521 66.667 0.00 0.00 0.00 4.26
427 428 2.279120 GATCGCACGCCTCCTCAG 60.279 66.667 0.00 0.00 0.00 3.35
428 429 3.838271 GGATCGCACGCCTCCTCA 61.838 66.667 4.77 0.00 0.00 3.86
429 430 4.593864 GGGATCGCACGCCTCCTC 62.594 72.222 4.64 0.40 0.00 3.71
437 438 1.956170 CTATGCCACGGGATCGCAC 60.956 63.158 10.70 0.00 40.63 5.34
438 439 2.421314 CTATGCCACGGGATCGCA 59.579 61.111 10.70 2.52 40.63 5.10
439 440 2.357517 CCTATGCCACGGGATCGC 60.358 66.667 0.00 0.00 40.63 4.58
440 441 0.321671 ATTCCTATGCCACGGGATCG 59.678 55.000 0.00 0.00 43.02 3.69
441 442 1.339151 GGATTCCTATGCCACGGGATC 60.339 57.143 0.00 0.00 0.00 3.36
442 443 0.693049 GGATTCCTATGCCACGGGAT 59.307 55.000 0.00 0.00 0.00 3.85
443 444 1.754380 CGGATTCCTATGCCACGGGA 61.754 60.000 0.30 0.00 0.00 5.14
444 445 1.301716 CGGATTCCTATGCCACGGG 60.302 63.158 0.30 0.00 0.00 5.28
445 446 1.961277 GCGGATTCCTATGCCACGG 60.961 63.158 0.30 0.00 0.00 4.94
446 447 1.069765 AGCGGATTCCTATGCCACG 59.930 57.895 0.30 0.00 0.00 4.94
447 448 0.179045 ACAGCGGATTCCTATGCCAC 60.179 55.000 0.30 0.00 0.00 5.01
448 449 0.179048 CACAGCGGATTCCTATGCCA 60.179 55.000 0.30 0.00 0.00 4.92
449 450 1.510480 GCACAGCGGATTCCTATGCC 61.510 60.000 0.30 0.00 0.00 4.40
450 451 1.944778 GCACAGCGGATTCCTATGC 59.055 57.895 0.30 1.80 0.00 3.14
463 464 4.790962 AGGGCATGCCTCGCACAG 62.791 66.667 34.70 0.00 43.04 3.66
464 465 4.783621 GAGGGCATGCCTCGCACA 62.784 66.667 34.70 0.00 43.04 4.57
469 470 2.356793 CGATCGAGGGCATGCCTC 60.357 66.667 34.70 26.37 36.10 4.70
470 471 3.157252 ACGATCGAGGGCATGCCT 61.157 61.111 34.70 21.29 36.10 4.75
471 472 2.969238 CACGATCGAGGGCATGCC 60.969 66.667 29.47 29.47 0.00 4.40
472 473 2.969238 CCACGATCGAGGGCATGC 60.969 66.667 24.34 9.90 0.00 4.06
473 474 2.104572 ATCCCACGATCGAGGGCATG 62.105 60.000 37.10 19.50 44.24 4.06
474 475 1.838846 ATCCCACGATCGAGGGCAT 60.839 57.895 37.10 28.26 44.24 4.40
475 476 2.443952 ATCCCACGATCGAGGGCA 60.444 61.111 37.10 27.52 44.24 5.36
476 477 2.029666 CATCCCACGATCGAGGGC 59.970 66.667 37.10 0.00 44.24 5.19
477 478 2.737180 CCATCCCACGATCGAGGG 59.263 66.667 36.47 36.47 45.65 4.30
478 479 2.029666 GCCATCCCACGATCGAGG 59.970 66.667 24.34 23.56 0.00 4.63
479 480 1.592669 GTGCCATCCCACGATCGAG 60.593 63.158 24.34 14.64 0.00 4.04
480 481 2.296814 CTGTGCCATCCCACGATCGA 62.297 60.000 24.34 0.00 38.55 3.59
481 482 1.884464 CTGTGCCATCCCACGATCG 60.884 63.158 14.88 14.88 38.55 3.69
482 483 0.811616 GACTGTGCCATCCCACGATC 60.812 60.000 0.00 0.00 38.55 3.69
483 484 1.221840 GACTGTGCCATCCCACGAT 59.778 57.895 0.00 0.00 38.55 3.73
484 485 2.662596 GACTGTGCCATCCCACGA 59.337 61.111 0.00 0.00 38.55 4.35
485 486 2.436646 GGACTGTGCCATCCCACG 60.437 66.667 0.00 0.00 38.55 4.94
486 487 2.436646 CGGACTGTGCCATCCCAC 60.437 66.667 0.00 0.00 36.28 4.61
487 488 3.716195 CCGGACTGTGCCATCCCA 61.716 66.667 0.00 0.00 0.00 4.37
488 489 2.311688 CTACCGGACTGTGCCATCCC 62.312 65.000 9.46 0.00 0.00 3.85
503 504 4.468689 GGTGCAGCCCCGTCTACC 62.469 72.222 4.03 0.00 0.00 3.18
656 657 1.868251 GTTCGTCGTAGGCTCGCAG 60.868 63.158 0.00 0.00 0.00 5.18
657 658 2.177531 GTTCGTCGTAGGCTCGCA 59.822 61.111 0.00 0.00 0.00 5.10
658 659 2.578981 GGTTCGTCGTAGGCTCGC 60.579 66.667 0.00 0.00 0.00 5.03
659 660 2.101770 GGGTTCGTCGTAGGCTCG 59.898 66.667 0.00 0.00 0.00 5.03
660 661 0.735287 GTTGGGTTCGTCGTAGGCTC 60.735 60.000 0.00 0.00 0.00 4.70
661 662 1.291272 GTTGGGTTCGTCGTAGGCT 59.709 57.895 0.00 0.00 0.00 4.58
662 663 0.600782 TTGTTGGGTTCGTCGTAGGC 60.601 55.000 0.00 0.00 0.00 3.93
663 664 1.528161 GTTTGTTGGGTTCGTCGTAGG 59.472 52.381 0.00 0.00 0.00 3.18
933 936 5.313712 TCAAGATGCATGCATGATGATACT 58.686 37.500 36.73 21.91 36.70 2.12
934 937 5.622770 TCAAGATGCATGCATGATGATAC 57.377 39.130 36.73 20.03 36.70 2.24
935 938 6.834168 ATTCAAGATGCATGCATGATGATA 57.166 33.333 36.73 24.80 36.70 2.15
955 966 4.611366 CGTTCGTTACCAAAGCAGAAATTC 59.389 41.667 0.00 0.00 0.00 2.17
1027 1042 0.609131 CCAAGGAGGGCATGTTCGTT 60.609 55.000 0.00 0.00 0.00 3.85
1069 1084 0.666274 CGCAGCTCGGAAAGTACACA 60.666 55.000 0.00 0.00 33.78 3.72
1360 1375 3.497115 TGCAAGGACAGGGCCACA 61.497 61.111 6.18 0.00 0.00 4.17
2073 2088 7.060383 AGTATAATTCACTGATGGACTGGAG 57.940 40.000 0.00 0.00 0.00 3.86
2078 2093 8.566260 ACGTACTAGTATAATTCACTGATGGAC 58.434 37.037 5.75 0.00 0.00 4.02
2079 2094 8.565416 CACGTACTAGTATAATTCACTGATGGA 58.435 37.037 5.75 0.00 0.00 3.41
2080 2095 8.350722 ACACGTACTAGTATAATTCACTGATGG 58.649 37.037 5.75 0.00 0.00 3.51
2469 2490 3.768757 TGCATTAAAAAGGGGGTGATGAG 59.231 43.478 0.00 0.00 0.00 2.90
2536 2557 2.892852 TGAGGTGCAGGAATTTTCTTGG 59.107 45.455 4.82 0.00 35.12 3.61
2546 2568 1.689243 CGGATGGATGAGGTGCAGGA 61.689 60.000 0.00 0.00 0.00 3.86
2636 2658 2.806818 CCATGGATGCGAGAAATCTGAG 59.193 50.000 5.56 0.00 0.00 3.35
2637 2659 2.435437 TCCATGGATGCGAGAAATCTGA 59.565 45.455 11.44 0.00 0.00 3.27
2844 2879 0.810031 ATCCATTCGAAACGCGGGAG 60.810 55.000 12.47 0.00 41.33 4.30
2855 2890 1.958205 GCGGCTCAGGATCCATTCG 60.958 63.158 15.82 11.07 0.00 3.34
2865 2900 3.207669 GCTTGATGGGCGGCTCAG 61.208 66.667 9.15 0.00 0.00 3.35
2873 2908 0.947244 GCCGTTAGATGCTTGATGGG 59.053 55.000 0.00 0.00 0.00 4.00
2901 2936 0.963962 TGAGGTGAACCGGTGTCTAC 59.036 55.000 8.52 4.96 42.08 2.59
2906 2941 1.021390 GCTCATGAGGTGAACCGGTG 61.021 60.000 23.89 0.00 42.08 4.94
2920 2955 3.120546 CGACGTTTGACAAAGATGCTCAT 60.121 43.478 0.00 0.00 0.00 2.90
3013 3048 2.370849 AGGAGCGGGTGAAAAGTAAGAA 59.629 45.455 0.00 0.00 0.00 2.52
3014 3049 1.975680 AGGAGCGGGTGAAAAGTAAGA 59.024 47.619 0.00 0.00 0.00 2.10
3028 3063 0.451783 GGCCATTACAACAAGGAGCG 59.548 55.000 0.00 0.00 0.00 5.03
3047 3082 3.689161 TGAATGAAGAACGTGGCCTTATG 59.311 43.478 3.32 0.00 0.00 1.90
3054 3089 3.000041 TCGGAATGAATGAAGAACGTGG 59.000 45.455 0.00 0.00 0.00 4.94
3063 3098 4.162131 TCAAGATGGTCTCGGAATGAATGA 59.838 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.