>input_sequence_59130
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------------------------------------------------------ATGGTTGGATTAGTAGCTGTAGTTCT
TAACGAACATGCCCTCCTTGGCCTCAGCGGCTTCGCCGTCGCTTGTGTACTTTCCGAGCTGCGCGAGCGAGTTGGCCTTG
GCACGCAGCAGCAGCGCCTCCTGCGCCGCCTTGACGTTCTCCGGCCGGCCGCCCCACGTCTTGAGGCACGTGTTCTGCAG
CGCCCTGGCGTAGGAGAAGGAGACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTGAGGTTGAGCGTGGCCTCCACCT
CGGACTGCCCTCCCGACAGGAACATGATGCCGGGGACGGCGGGCGGCACGCGGCGGCTGAGGAGCTTGAGGGTGTAGTCG
GCGACCTGCTCCGGTGTGGCCCTGTCCTTGCACTCGGCGCCGGGGGTGACCATGCTGGGTTTGAGCAGGATGCCCTCGAA
CATGACGTTGTTCTGGGCCATCTGGTAGAAGGTCTCGGCCCACACCTTCTGCGCCACCTCGAAGGTGCGCTCGATGCCGT
GCTCCCCGTCCAGCAGGATCTCCGGCTCCACGATGGGCACCAGACCGTTGTCCTGCGAGATGGCGGCGTAGCGGGCGAGG
CCCCAGGCGGCCTCCTTGACGGCCAGCTCGGAGGGGCCGTTGGGGATGCTGACCACGGTGCGCCACTTGGCGAAGCGGGC
GCCCTGCTGGTAGTAGGCGGCCTCCCGGGAGGCGAGGCCGTCGAGGCCCTGGCACCAAGACTCGTCGTTGGAGCCGGTGA
GCGGCACCAGGCCCTTGTCCACCTTGATCCCGGGCACGATGCCCTGCTCCACCAGGATGTCGACGATCTTCTTGCCGTCG
ACGGTGGACTGGTAGAGCGTCTCCTCGAAGAGGATGGCGCCGGAGATGTGGTTGCCGAGGCCAGGGACGGAGACCAGCAG
CGTGCGGAACGCCTGCCGGTTCGCCTCTGTGTTCTCCAGGCCGATCGAGTCGAGGCGCTTCCCGCAGGTGGCGTTGGACT
CGTCCATGGCCAGGATGCCGCGCCCCGGCGACGCGATGGTTTTCTGCACGTGCGTGCAAAGCAGCAGCAGCATGTCAGTC
CAGTCCACTCCAGTCCATCAGTGAATTATAC---TAGTACGTGTAATTCGGCCGGCGAGAAGCTGCCTGCAGCGTACGTA
CCGCGGTCTTGA--------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G122600
GTAGAACCTAGGTTAGACTCAATACCATGTAAAACATAGGTTTTGGGAGGAACTGGCCCGACCCTCTATGGGATGGCCTA
TCACATACTTCCTCCGTCTAGAAATATTTGTCCTAGAAATGAATAAAATGGACGTATCTATAACTAAAATAAGTCTAGAT
ACAACCATTTCTAGGATAAGTATTTTTGGACGGAGGGAGTATATATAATGATGTCATACAAGTCCCATACCAATATGGTA
TGGATTACACAGTAAAACTACAATACGAAGTTTAACACATTTGCATGATTTTGAGAATCCGGATTTGAGATATGTGGATG
CCGGACACAAGATATGAGAACCCGTCCGGATGCATCCGCGGGCATTTCAGGACGCGTCTGTGCGTATAGATGGCCGGATT
TGACAAATCTGGCTAGGTGTTCTTAGGCTGAGGAGGCGTGCGATCCCGTGGCATAGGAATCCGCTGTGCGAGGCATGCCC
TCGATCGTGGGATGGCACAGTCCGGTAGACGGGGCTGCACCACGTCTTGCCTTTGTTTTCCATTGAGAAAGAAGGAAAAG
CAGGAGGTTGCGCGCTGCACAGAATAGTCTCTTTCACTCTCTTTCGATCTTCCATAGGAGCTCCAGGTCAGGGACAAGAC
GATCACATAGGTATGGCTGCGAGCCTACGACGAACCCAACAAACGCCCTG--CTGCCAAGCGCCAACCTCATCGCCAATT
CATGGTGTACGTACGTACATGCAAAATTTTGCAGTAACCATGCAAATCCATGGATCGCACACGTAAAAGTAGCTTTACAA
TAATCTACTGGACTGTAGCATGAATTGTGCATATCGAGAGGCAAATTAACGAGTAAAAAAAGATCTAGAAAATACAAGTA
ATCATCATCTCAGGCTGAGGCTCCCAGCTCGATCGATCTTTGCACTTGCAGCTGTAGTATCATCATGCA--------TGC
ATCTTGAATTTCTGCTTTGGTAACGA----ACGTACGTAGTAGTGTTGATTGGAATGGTTGGATTAGTAGCTGTAGTTCT
TAACGAACATGCCCTCCTTGGCCTCAGCGGCTTCGCCGTCGCTTGTGTACTTTCCGAGCTGCGCGAGCGAGTTGGCCTTG
GCACGCAGCAGCAGCGCCTCCTGCGCCGCCTTGACGTTCTCCGGCCGGCCGCCCCACGTCTTGAGGCACGTGTTCTGCAG
CGCCCTGGCGTAGGAGAAGGAGACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTGAGGTTGAGCGTGGCCTCCACCT
CGGACTGCCCTCCCGACAGGAACATGATGCCGGGGACGGCGGGCGGCACGCGGCGGCTGAGGAGCTTGAGGGTGTAGTCG
GCGACCTGCTCCGGTGTGGCCCTGTCCTTGCACTCGGCGCCGGGGGTGACCATGCTGGGTTTGAGCAGGATGCCCTCGAA
CATGACGTTGTTCTGGGCCATCTGGTAGAAGGTCTCGGCCCACACCTTCTGCGCCACCTCGAAGGTGCGCTCGATGCCGT
GCTCCCCGTCCAGCAGGATCTCCGGCTCCACGATGGGCACCAGACCGTTGTCCTGCGAGATGGCGGCGTAGCGGGCGAGG
CCCCAGGCGGCCTCCTTGACGGCCAGCTCGGAGGGGCCGTTGGGGATGCTGACCACGGTGCGCCACTTGGCGAAGCGGGC
GCCCTGCTGGTAGTAGGCGGCCTCCCGGGAGGCGAGGCCGTCGAGGCCCTGGCACCAAGACTCGTCGTTGGAGCCGGTGA
GCGGCACCAGGCCCTTGTCCACCTTGATCCCGGGCACGATGCCCTGCTCCACCAGGATGTCGACGATCTTCTTGCCGTCG
ACGGTGGACTGGTAGAGCGTCTCCTCGAAGAGGATGGCGCCGGAGATGTGGTTGCCGAGGCCAGGGACGGAGACCAGCAG
CGTGCGGAACGCCTGCCGGTTCGCCTCTGTGTTCTCCAGGCCGATCGAGTCGAGGCGCTTCCCGCAGGTGGCGTTGGACT
CGTCCATGGCCAGGATGCCGCGCCCCGGCGACGCGATGGTTTTCTGCACGTGCGTGCAAAGCAGCAGCAGCATGTCAGTC
CAGTCCACTCCAGTCCATCAGTGAATTATAC---TAGTACGTGTAATTCGGCCGGCGAGAAGCTGCCTGCAGCGTACGTA
CCGCGGTCTTGACGAGCTCATCGTCGTAGGCGCCGGCGCGGACGACCATGGACACCCTCGGGGCGGCGACCTGGCGCGCG
ACGCCCCATTCGGCCTTCTTGGGGAGGAAGGAGGACTTGAGGAGAGTAGCAGATGCCATGTCCTTTTTTCTTCTTCTTC-
--CTTTCTTGCTTGCCTGCCTGCCACTGACCTCAAGCTCAAGGTGCTAGCTATCCTCTCTGCCTCGCTGAGGCCAATGGA
CTCGTATTTGAATGGGTGGCACGAGGGGATATGAGGTGTGGGGTGGAGGTTTGGATGGCTCAATGTCTGGCTGTCCGTCC
ATCGCCCCACTCATCACCCCCTTTTTAATGCACAATTGCAATTCCCCATGTTTATGTGCACCGTGTAAAACAAAAGC-CA
AGAAAATTCCTGCACCTCATCCATCCGTGGGAACGCTGCTGGCCTCAAGATGGCTTTCATCATCACCTGCGGCCGCGTTT
CACCGGTAGCCTATGCCCTCAGA--TTTCTCGCATCCATGGATAGATAGATAGAT----TCACCCCACCCGGGGTGGTTG
CCATGCTTCCGCTTG----TTTTTCTTTCCCGGATGGATCTCAGCAAGTTGCAAGCTGCGAGCTGCTTGCTAGCACA---
GTAGTATGTGATTTCTGACTCACTGTCAGGTTCTGTAACTAAACTTAACTGAATGTATCAGCGGCACCAGCTCCCCTGCT
CCCGCGTTTCGAATGGATCCTGAGCCGCCCATCAAGCATCTAACGGCTCTCCTAGGTAGACACCGGTTCACCTCATGAGC
ATCTTTGTCAAACGTCGATCAACCATCGGACGGTCCCCAAGCTCTCGAGCATCGTTGTTGCCCCGTCATGCACATTTTCT
TCTTTCATTCTTACTTTTCACCCGCTCCTTGTTGTAATGGCCATAAGGCCACGTTCTTCATTCATTCCGAGACCATCTTG
ATGTAATCTGGTTGTAAACCTAATTGCCTGTGGCAAGCTACAGTACTTTCGTGCACCAGTTTGGGTGCA
>chr5B_490
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---------GGATGGCACAGTCCAGTAGACGGGGCTGCACCACGTCTTGCCTTTGTTTTCCATTGAGAAAGAAGGAAAAG
CAGGAGGTTGCGCGCTGCACAGAATAGTTTCTTTCCCTCTCTTTCGATCTTCCATAGGAGCTCCAGGTCAGGGACAAGAC
GATCACATAGGTATGG--------CTACGACGAACCCAACAAGCAACCAACCCTGCCAAGCGCCAACCTCATCGCCAATT
CATGGTGTACGTACGTACATGCAAAATTTTGCAGTAACCATGCAAATCCATGGATTGCACACGTAAAAGTAGCTTTACAA
TAATCTACTGGACTGTAGCATGAATTGTGCATATCGAGAGGCAAATTAACGAGTAAAAAAAGATCTAGAAAATACAAGTA
ATCATCATCTCAGACTGAGGGT-CCAGCTCGATCGATC-TTGCACTTGCAGCTGA---ATCATCATGCA--------TGC
ATCTTTAATTTCTGCTTTGGTAACGAACGTACGTACGTAGTAGTGTTGATTGGAATGGTTGGATTAGTAGCTGTAGTTCT
TGACGAACATGCCCTCCTTGGCCTCGGCGGCTTCGCCGTCGCTGGTGTACTTTCCGAGCTGCGCGAGCGAGTTGGCCTTG
GCACGCAGCAGCAGCGCCTCCTGCGCCGCCTTGACGTTCTCCGGCCGGCCGCCCCACGTCTTGAGGCACGTGTTCTGCAG
CGCCCGGGCGTAGGAGAAGGAGACGTGCCACGGGTTGGGCCCCTGGTTCATGGCATTGAGGTTGAGCGTGGCCTCCACCT
CGGACTGCCCTCCCGAGAGGAACATGATGCCGGGGACGGCGGGCGGCACGCGGCGGCTGAGGAGCTTGAGGGTGTAGTCG
GCGACCTGCTCCGGCGTGGCCCTGTCCTTGCACTCGGCGCCGGGGGTGACCATGCTGGGTTTGAGCAGGATGCCCTCGAA
CATGACGTTGTTCTGGGCCATCTGGTAGAAGGTCTCGGCCCACACCTTCTGCGCCACCTCGAAGGTGCGCTCGATGCCGT
GCTCCCCGTCCAGCAGGATCTCCGGCTCCACGATGGGCACCAGACCGTTGTCCTGCGAGATGGCGGCGTAGCGGGCGAGG
CCCCAGGCGGCCTCCTTGACGGCCAGCTCGGAGGGGCCGTTGGGGATGCTGACCACGGTGCGCCACTTGGCGAAGCGGGC
GCCCTGCTGGTAGTAGGCGGCCTCCCGGGAGGCGAGGCCGTCGAGGCCCTGGCACCAAGACTCGTCATTGGAGCCGGTGA
GCGGCACCAGGCCCTTGTCCACCTTGATCCCGGGCACGACGCCCTGCTCCACCAGGATGTCGACGATCTTCTTGCCGTCG
ACGGTGGACTGGTAGAGCGTCTCCTCGAAGAGGATGGCGCCGGAGATGTGGTTGCCGAGGCCAGGGACGGAGACCAGCAG
CGTGCGGAACGCCTGCCGGTTCGCCTCTGTGTTCTCCAGACCGATCGAGTCGAGGCGCTTCCCGCAGGTGGCGTTGGACT
CGTCCATGGCCAGGATGCCGCGCCCCGGCGACGCGATGGTTTTCTGCACGTGCGTGCAAAGCAGCAGCAGCATGTCAGTC
CAGTCCAGTCCATG-----AGTGAATTATAC---TAGTACGTGTAATTCGGCCGGCGAGAAG----CTGCAGCGTACGTA
CCGCGGTCTTGACGAGCTCATCGTCGTAGGCGCCGGCGCGGACGACCATGGACACCCTCGGGGCGGCGACCTGGCGCGCG
ACGCCCCATTCGGCCTTCTTGGGGAGGAAGGAGGACTTGAGGAGAGTAGCAGATGCCATGTCCTTTTTTCTTCTTCTTC-
--CTTTCTTGCTTGCCTGCCTGCCACTGACCTCAAGCTCAAGGTGCTAGCTATCCTCTCTGCCTCGCTGAGGCCAATGGA
CTCATATTTGAATGGGTGGCACGAGGGGATATGAGGTGTGGGGTGGAGGTTTGGATGGCTCAATGTCTGGCTGTCCGTCC
ATC----------------CCTTTTTAATGCACAATTGCAATTCCCCATGTTTATGTGCACCGTGTAAAACAAAAGG---
--------CCTGCACCTCATCCATCCGTGGGAACGCTGCTGGCCTCAAGATGGCTGACATCATCACCTGCGGCCGCGTTT
CACCGGTAGCCTATGCCA-CAGATCTTTCTCGCATCCATGGATAGATAGATAGATAGATTCACCCCGCCCGGGGTGGTTG
CCATGCTTCCGCTTG----TTTTTCTTTCCCGGATGGATCTCAGCAAGTTGCAAGTTGTGAGCTGCTTGCTAGCACAGTA
GTAGTATGTGATTTCTGACTCACTGTCAGGTTCTGTAACTGAACTTAACTGAATGTATCACCGGC------TCCCCTGTT
CCCGCGTTTTGAATGGATCTTGAGCCGTCCATCAAGCATCTAACGGCTCTCCTAGCTAGATACCGGTTCACCTCGTGAGC
ATCTTTGTCAAAAGTTGATCAAGCATCAGACGGTCCCCAAGCTCTCGAGCATCGTTGTTGCCCCGTCATGCACCTTTTCT
TCTTTCAGCCTTACTTTTCACCTGCTCCCTGTTGTAATGGCTATAAGGACACGTTCTCCATTCATTCCGAGACCATCTTG
ATGTAATCGGGTTGTAAACCTAATTGCCTGTGGCAAGCTACAGTACTTTCATGCACTAGTTCGGGTGCA
>chr5A_715
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----------------------------------------------------------------------------AATT
CATGGTGTACGTATGTACATGCAAAATTTTGCAGTAACCATGCAAATCCATGGATCGCACACGTAAAAGTAGCTTTACAA
TAATCTACTGGACTGTAGCATGAATTGTGCATATCGAGAGGCAAATTAACGAGTAAAAAAAGATCTAGAAAATACAAGTA
ATCATCATCTCAGGCTCAGGCTCCGAGCTCGATCGATC-TTGCACTTGCAGCTGT---ATCATCATGCATGCATGCATGC
ATCTTTAATTTCTGCTTTCGTAACGA----ACGTACGTAGTAGTGTTGATTGGAATGGTTGGATTAGTAGCTGTAGTTCT
TGACGAACATGCCCTCCTTGGCCTCGGCGGCTTCGCCGTCGCTGGTGTACTTTCCGAGCTGCGCGAGTGAGTTGGCCTTG
GCACGCAGCAGCAGCGCCTCCTGCGCCGCCTTGACGTTCTCCGGCCGGCCGCCCCACGTCTTGAGGCACGTGTTCTGCAG
CGCCCTGGCGTAGGAGAAGGAGACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTGAGGTTGAGCGTGGCCTCCACCT
CGGACTGCCCTCCCGACAGGAACATAATGCCGGGGACGGCGGGCGGCACGCGGCGGCTGAGGAGCTTGAGGGTGTAGTCG
GCGACCTGCTCCGGCGTGGCCCTGTCCTTGCACTCGGCGCCGGGGGTGACCATGCTGGGTTTGAGCAAGATGCCCTCGAA
CATGACGTTGTTCTGGGCCATCTGGTAGAAGGTCTCGGCCCACACCTTCTGCGCCACCTCGAAGGTGCGCTCGATGCCGT
GCTCCCCGTCCAGCAGGATCTCCGGCTCCACGATGGGCACCAGACCGTTGTCCTGCGAGATGGCGGCGTAGCGGGCGAGG
CCCCATGCGGCCTCCTTGACAGCCAGCTCGGAGGGGCCGTTGGGGATGCTGACCACGGTGCGCCACTTGGCGAAGCGGGC
GCCCTGCTGGTAGTAGGCGGCCTCCCGGGAGGCGAGGCCGTCGAGACCCTGGCACCAAGACTCGTCGTTGGAGCCGGTGA
GCGGCACCAGGCCCTTGTCCACCTTGATCCCGGGCACGATGCCCTGCTCCACCAGGATGTCGACGATCTTCTTGCCGTCG
ACGGTGGACTGGTAGAGCGTCTCCTCGAAGAGGATGGCGCCGGAGATGTGGTTGCCGAGGCCAGGGACGGAGACCAGCAG
CGTGCGGAACGCCTGCCGGTTCGCCTCTGTGTTCTCCAGGCCGATCGAGTCGAGGCGCTTCCCGCAGGTGGCGTTGGACT
CGTCCATGGCCAGGATGCCGCGCCCCGGCGACGCGATGGTTTTCTGCACGTGCGTGCAAAGCAGCAGCAGCATGTCAGTC
CAGTCCAGTCCATG-----AGTGAATTATACTAGTAGTACGTGTAATTCGGCCGGCGAGAAGCTGCCTGCAGCGTACGTA
CCGCGGTCTTGACGAGCTCATCGTCGTAGGCGCCGGCGCGGACGACCATGGACACCCTCGGGGCGGCGACCTGGCGCGCG
ACGCCCCATTCGGCCTTCTTGGGGAGGAAGGAGGACTTGAGGAGAGTAGCAGATGCCATGTCCTTTCTTCTTCTTCTTCT
TACTTTCTTGCTTGCCTGCCTGCCACTGACCTCAAGCTCAAGGTGCTAGCTATCCTCTCTGCCTCGCTGAGGCCAATGGA
CTCGTATTTGAATGGGTGGCACGAGGGGATATGAGGTGTGGGGTGGAGGTTTGGATGGCTCAATGTCTGGCTGTCCGTCC
ATCGCCCCAGTCATCACCCCTTTTTTAATGCACAATTGCAATTCCCCATGTTTATGTGCACCGTGTAAAACAAAAAGGCA
AGAAAATCCCTGCACCTCATCCATCCGTGGGAACGCTGCTGGCCTCAAGATGGCTGACATCATCACCTGCGGCCGCGTTT
CACCGGTAGCTTATGCCA-CAGA--TTTCTCGCATCCATGGATAGATAGATAGATAGATTCACCCCGCCCGGGGTGGTTG
CCATGCTTCCGCTTGGCTCTTTTTCTTTTCCGGATGGATCTCAGCAAGTTGC----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS--------------S--------------------------------------------------------
----------------------------S------S--------------------------------------------
----------------SSSSSSSS------------------S-SS--SS------------------------------
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--------------------------------------S----------------SSS----------------------
-----S--------------------------------------------------------------------------
-S-----------------------S-----------------S------------------------------------
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--------------S-----------------------------------------------------------------
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-------S----SSSSSSS-------------------------------------------------------------
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---------S------------------------------------------------------------------S---
-------S-----------------------------------------------SS-----------------------
-----------------SS-----------------------------------------------S-------------
-------------------------------------------------------S--S---------------------
----------------------------------------S-------------------S----SSSSSS-------S-
---------S---------S-------S---------------------------S----S-------------S-----
------------S--S------S----S---------------------------------------------S------
-------SS-------------S-----S------------S------S--------S----------------------
--------S-----------------------------------------S-----S----S-------
>forward_664
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----ACATAGGTATGGCTGCGAGC--------------------------------------------------------
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>reverse_2568
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-------TCCTGCACCTCATCCATCCG-----------------------------------------------------
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