Multiple sequence alignment - TraesCS5D01G112800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G112800 chr5D 100.000 4835 0 0 1 4835 129161641 129166475 0.000000e+00 8929.0
1 TraesCS5D01G112800 chr5D 89.109 101 9 2 4449 4547 34445610 34445510 1.830000e-24 124.0
2 TraesCS5D01G112800 chr5D 91.954 87 6 1 4458 4544 464686714 464686629 2.360000e-23 121.0
3 TraesCS5D01G112800 chr5D 88.350 103 7 4 4443 4541 526884234 526884335 8.500000e-23 119.0
4 TraesCS5D01G112800 chr5B 94.993 2297 58 23 2177 4445 141453077 141455344 0.000000e+00 3552.0
5 TraesCS5D01G112800 chr5B 93.887 2012 71 14 161 2165 141451058 141453024 0.000000e+00 2987.0
6 TraesCS5D01G112800 chr5B 98.077 156 2 1 13 167 141448960 141449115 2.220000e-68 270.0
7 TraesCS5D01G112800 chr5B 89.423 104 5 4 4443 4542 621464059 621464160 5.080000e-25 126.0
8 TraesCS5D01G112800 chr5A 94.131 2266 67 20 2175 4390 144386184 144388433 0.000000e+00 3387.0
9 TraesCS5D01G112800 chr5A 93.937 2177 99 20 2 2165 144383979 144386135 0.000000e+00 3258.0
10 TraesCS5D01G112800 chr5A 82.234 197 18 6 4634 4829 520245776 520245596 2.330000e-33 154.0
11 TraesCS5D01G112800 chr5A 87.059 85 10 1 4735 4818 609861174 609861258 1.430000e-15 95.3
12 TraesCS5D01G112800 chr5A 96.429 56 2 0 13 68 144382647 144382702 5.150000e-15 93.5
13 TraesCS5D01G112800 chr7D 85.437 206 24 5 4625 4829 121667077 121667277 4.900000e-50 209.0
14 TraesCS5D01G112800 chr7D 80.905 199 34 4 4632 4829 535926669 535926474 2.330000e-33 154.0
15 TraesCS5D01G112800 chr3D 85.787 197 22 5 4634 4829 610209401 610209592 2.280000e-48 204.0
16 TraesCS5D01G112800 chr2A 81.188 202 33 5 4631 4829 92342051 92342250 1.800000e-34 158.0
17 TraesCS5D01G112800 chr4D 91.579 95 8 0 4735 4829 484182113 484182019 1.090000e-26 132.0
18 TraesCS5D01G112800 chr3B 79.000 200 36 6 4632 4829 425457812 425458007 1.090000e-26 132.0
19 TraesCS5D01G112800 chr2B 89.109 101 9 2 4445 4544 26724766 26724667 1.830000e-24 124.0
20 TraesCS5D01G112800 chr2B 87.156 109 11 3 4447 4553 26724668 26724775 2.360000e-23 121.0
21 TraesCS5D01G112800 chr2B 89.474 95 9 1 4448 4541 129659861 129659767 8.500000e-23 119.0
22 TraesCS5D01G112800 chr6B 88.350 103 7 3 4449 4549 187841339 187841438 8.500000e-23 119.0
23 TraesCS5D01G112800 chr4B 88.350 103 6 4 4445 4541 520933339 520933441 8.500000e-23 119.0
24 TraesCS5D01G112800 chrUn 80.723 83 12 4 1980 2060 81996774 81996694 1.450000e-05 62.1
25 TraesCS5D01G112800 chr4A 91.111 45 3 1 4407 4450 590915546 590915590 5.230000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G112800 chr5D 129161641 129166475 4834 False 8929.000000 8929 100.000000 1 4835 1 chr5D.!!$F1 4834
1 TraesCS5D01G112800 chr5B 141448960 141455344 6384 False 2269.666667 3552 95.652333 13 4445 3 chr5B.!!$F2 4432
2 TraesCS5D01G112800 chr5A 144382647 144388433 5786 False 2246.166667 3387 94.832333 2 4390 3 chr5A.!!$F2 4388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 3655 0.037590 CAATTCCAACCCGAGACCCA 59.962 55.000 0.00 0.0 0.0 4.51 F
369 3656 0.328258 AATTCCAACCCGAGACCCAG 59.672 55.000 0.00 0.0 0.0 4.45 F
370 3657 0.546747 ATTCCAACCCGAGACCCAGA 60.547 55.000 0.00 0.0 0.0 3.86 F
581 3871 1.228154 GGGGAAGCGAGGTTTGTGT 60.228 57.895 0.00 0.0 0.0 3.72 F
584 3874 1.235281 GGAAGCGAGGTTTGTGTCCC 61.235 60.000 0.00 0.0 0.0 4.46 F
2219 5561 1.333308 TCACGATGCAGTGTTGTTTGG 59.667 47.619 6.04 0.0 42.4 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 5234 1.028868 GTGACTTGGATGGAGGCTGC 61.029 60.000 0.0 0.0 0.00 5.25 R
2336 5681 1.327460 GCTACACACACACACACACAG 59.673 52.381 0.0 0.0 0.00 3.66 R
2373 5742 8.762149 AATATTGTCACGCAAAAATATACGAC 57.238 30.769 0.0 0.0 40.91 4.34 R
2547 5916 0.457851 CAACTGGTTTTTGGGCGACA 59.542 50.000 0.0 0.0 0.00 4.35 R
3473 6843 8.781067 TTTGACGCAATGAAGCATTATAATAC 57.219 30.769 0.0 0.0 32.35 1.89 R
4650 8051 0.106819 AGGTGAAGATGAGCATGGGC 60.107 55.000 0.0 0.0 41.61 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 1411 3.644966 TTGCCCCTTATTGAATCGACT 57.355 42.857 0.00 0.00 0.00 4.18
256 3538 4.641396 TGCAGTTCCATCGATATAAAGGG 58.359 43.478 0.00 0.00 0.00 3.95
267 3553 3.455849 GATATAAAGGGGAGAGAGGGGG 58.544 54.545 0.00 0.00 0.00 5.40
288 3575 2.556622 GGAAATGACAAGCGAAAAGGGA 59.443 45.455 0.00 0.00 0.00 4.20
342 3629 2.048222 CGTCGCTTCTTCCCTGCA 60.048 61.111 0.00 0.00 0.00 4.41
365 3652 2.194201 TTCCAATTCCAACCCGAGAC 57.806 50.000 0.00 0.00 0.00 3.36
366 3653 0.326927 TCCAATTCCAACCCGAGACC 59.673 55.000 0.00 0.00 0.00 3.85
367 3654 0.679960 CCAATTCCAACCCGAGACCC 60.680 60.000 0.00 0.00 0.00 4.46
368 3655 0.037590 CAATTCCAACCCGAGACCCA 59.962 55.000 0.00 0.00 0.00 4.51
369 3656 0.328258 AATTCCAACCCGAGACCCAG 59.672 55.000 0.00 0.00 0.00 4.45
370 3657 0.546747 ATTCCAACCCGAGACCCAGA 60.547 55.000 0.00 0.00 0.00 3.86
507 3797 2.315356 CGACATTCGTTACCGCGC 59.685 61.111 0.00 0.00 34.72 6.86
581 3871 1.228154 GGGGAAGCGAGGTTTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
584 3874 1.235281 GGAAGCGAGGTTTGTGTCCC 61.235 60.000 0.00 0.00 0.00 4.46
604 3894 1.712018 GCCCGTATCTGGTTTTCGGC 61.712 60.000 0.00 0.00 39.87 5.54
686 3976 2.038557 GTGCCTGGTTCTTAGGAAGACA 59.961 50.000 0.00 0.00 37.23 3.41
687 3977 2.708861 TGCCTGGTTCTTAGGAAGACAA 59.291 45.455 0.00 0.00 37.23 3.18
697 3987 2.361085 AGGAAGACAACACCCCCTAT 57.639 50.000 0.00 0.00 0.00 2.57
698 3988 2.644151 AGGAAGACAACACCCCCTATT 58.356 47.619 0.00 0.00 0.00 1.73
699 3989 3.810623 AGGAAGACAACACCCCCTATTA 58.189 45.455 0.00 0.00 0.00 0.98
700 3990 3.780850 AGGAAGACAACACCCCCTATTAG 59.219 47.826 0.00 0.00 0.00 1.73
1060 4358 9.567848 TTTTTCTCTGTTCTTTTGATGTTGTAC 57.432 29.630 0.00 0.00 0.00 2.90
1239 4537 3.245284 CCATAGTTGTTGGCGATAAGACG 59.755 47.826 0.00 0.00 0.00 4.18
1337 4636 6.942532 TTCTTGTTCATAGTTGTTGAAGCT 57.057 33.333 0.00 0.00 33.95 3.74
1409 4709 3.871485 TGGCAACTGTTTTGCATCTTTT 58.129 36.364 10.90 0.00 46.58 2.27
1432 4732 4.013050 TGGCGATATCATGTTGGTTTTGA 58.987 39.130 3.12 0.00 0.00 2.69
1478 4778 5.185454 TGTGCTAGTATTGGAACATCAAGG 58.815 41.667 0.00 0.00 39.30 3.61
1487 4787 8.717717 AGTATTGGAACATCAAGGAAGATATGA 58.282 33.333 0.00 0.00 39.30 2.15
1493 4793 4.474651 ACATCAAGGAAGATATGACACCCA 59.525 41.667 0.00 0.00 0.00 4.51
1641 4942 8.561738 AACTTACACCTACTGTTTTCCATATG 57.438 34.615 0.00 0.00 33.91 1.78
1818 5119 4.602340 TCTGGACAAACTAACTCAGACC 57.398 45.455 0.00 0.00 0.00 3.85
1832 5133 6.435292 AACTCAGACCTGGTATTGTACTTT 57.565 37.500 0.00 0.00 0.00 2.66
1850 5151 8.388319 TGTACTTTTCATTTTTGTTCTTGTCG 57.612 30.769 0.00 0.00 0.00 4.35
1854 5155 4.561735 TCATTTTTGTTCTTGTCGTCCC 57.438 40.909 0.00 0.00 0.00 4.46
1897 5198 5.118990 AGTGGATGGTCATTCGACTATTTG 58.881 41.667 0.00 0.00 42.84 2.32
1933 5234 1.805945 GCCGACAGTACTTGGAGCG 60.806 63.158 9.26 2.15 0.00 5.03
2087 5388 5.211973 TGCTATCCTTCTTGGTCTGTCTAT 58.788 41.667 0.00 0.00 37.07 1.98
2090 5391 4.207891 TCCTTCTTGGTCTGTCTATTGC 57.792 45.455 0.00 0.00 37.07 3.56
2149 5450 1.554617 CTTTTTAATGGTGGGCCTGGG 59.445 52.381 4.53 0.00 35.27 4.45
2165 5466 2.224769 CCTGGGGAGCTTCAAGTAAACA 60.225 50.000 0.00 0.00 0.00 2.83
2166 5467 2.814336 CTGGGGAGCTTCAAGTAAACAC 59.186 50.000 0.00 0.00 0.00 3.32
2167 5468 2.173782 TGGGGAGCTTCAAGTAAACACA 59.826 45.455 0.00 0.00 0.00 3.72
2168 5469 2.552743 GGGGAGCTTCAAGTAAACACAC 59.447 50.000 0.00 0.00 0.00 3.82
2169 5470 2.223377 GGGAGCTTCAAGTAAACACACG 59.777 50.000 0.00 0.00 0.00 4.49
2171 5472 3.746492 GGAGCTTCAAGTAAACACACGAT 59.254 43.478 0.00 0.00 0.00 3.73
2172 5473 4.377431 GGAGCTTCAAGTAAACACACGATG 60.377 45.833 0.00 0.00 0.00 3.84
2195 5537 2.093711 AGTGGTCTTTTTGGTTTGTGCC 60.094 45.455 0.00 0.00 0.00 5.01
2219 5561 1.333308 TCACGATGCAGTGTTGTTTGG 59.667 47.619 6.04 0.00 42.40 3.28
2223 5565 3.186119 CGATGCAGTGTTGTTTGGTTTT 58.814 40.909 0.00 0.00 0.00 2.43
2334 5679 9.515020 CAGTAAATGTAGATCTCTGTTTCTCTC 57.485 37.037 0.00 0.00 0.00 3.20
2336 5681 9.730420 GTAAATGTAGATCTCTGTTTCTCTCTC 57.270 37.037 0.00 0.00 0.00 3.20
2373 5742 4.024218 GTGTAGCACAGGGTATAGTAGACG 60.024 50.000 0.00 0.00 34.08 4.18
2374 5743 3.294038 AGCACAGGGTATAGTAGACGT 57.706 47.619 0.00 0.00 0.00 4.34
2375 5744 3.212685 AGCACAGGGTATAGTAGACGTC 58.787 50.000 7.70 7.70 0.00 4.34
2466 5835 6.207614 GCTCACCCTCTTTTTCTTTACATCTT 59.792 38.462 0.00 0.00 0.00 2.40
3329 6699 3.439857 ACATAAGCTTTCCTTGCCTGA 57.560 42.857 3.20 0.00 34.95 3.86
3358 6728 3.044059 GCAAGGCACTGTCATCGCC 62.044 63.158 4.78 4.78 46.62 5.54
3451 6821 9.520515 AAGATTCAGATGGTTGTTGTAAGTTAT 57.479 29.630 0.00 0.00 0.00 1.89
3517 6887 9.249844 GCGTCAAATTTTAATGTTAAATCTTGC 57.750 29.630 11.30 0.00 33.12 4.01
3566 6940 4.450976 AGCAACCGCATGTTATTCTATCA 58.549 39.130 0.00 0.00 42.27 2.15
3624 6998 4.212636 TGAAACTGGCGAAGTAGTAAAAGC 59.787 41.667 0.00 0.00 38.56 3.51
3633 7007 4.319477 CGAAGTAGTAAAAGCAGCTGCAAA 60.319 41.667 38.24 18.59 45.16 3.68
3720 7094 4.219033 ACTCGTGCATGTTCGAATTTTTC 58.781 39.130 0.00 0.00 35.69 2.29
3732 7106 3.818210 TCGAATTTTTCAACAGGCTAGCA 59.182 39.130 18.24 0.00 0.00 3.49
3804 7178 9.315525 GGTCTTAAGATACACTCAATTAACTCC 57.684 37.037 8.75 0.00 0.00 3.85
3814 7188 6.772716 ACACTCAATTAACTCCATTGACAACT 59.227 34.615 0.00 0.00 36.03 3.16
3901 7275 7.286087 TGATGGATTTTGGATCAATTAGTGAGG 59.714 37.037 0.00 0.00 40.43 3.86
4117 7502 4.559862 TCCCAACCATGTTTTGTTTGTT 57.440 36.364 0.00 0.00 0.00 2.83
4121 7506 4.083110 CCAACCATGTTTTGTTTGTTTGCA 60.083 37.500 0.00 0.00 0.00 4.08
4192 7577 7.148440 GCAAATGCATTCCTGTTGCTTTAAATA 60.148 33.333 20.61 0.00 41.04 1.40
4285 7670 4.673968 TGTTCTACACATGTACTCCCTCT 58.326 43.478 0.00 0.00 0.00 3.69
4286 7671 5.084519 TGTTCTACACATGTACTCCCTCTT 58.915 41.667 0.00 0.00 0.00 2.85
4289 7674 7.233962 TGTTCTACACATGTACTCCCTCTTTTA 59.766 37.037 0.00 0.00 0.00 1.52
4321 7712 7.624360 ATTTCGCATATGAACTTTGACCTAA 57.376 32.000 6.97 0.00 0.00 2.69
4437 7838 8.811017 ACATTGATTTGGTATTGTGGATGTTAA 58.189 29.630 0.00 0.00 0.00 2.01
4466 7867 9.947433 TTTTTATATACTCTCTTCGTCCCAAAA 57.053 29.630 0.00 0.00 0.00 2.44
4469 7870 9.760077 TTATATACTCTCTTCGTCCCAAAATTC 57.240 33.333 0.00 0.00 0.00 2.17
4470 7871 4.625607 ACTCTCTTCGTCCCAAAATTCT 57.374 40.909 0.00 0.00 0.00 2.40
4471 7872 4.974399 ACTCTCTTCGTCCCAAAATTCTT 58.026 39.130 0.00 0.00 0.00 2.52
4472 7873 4.757149 ACTCTCTTCGTCCCAAAATTCTTG 59.243 41.667 0.00 0.00 0.00 3.02
4473 7874 4.714632 TCTCTTCGTCCCAAAATTCTTGT 58.285 39.130 0.00 0.00 0.00 3.16
4474 7875 4.755123 TCTCTTCGTCCCAAAATTCTTGTC 59.245 41.667 0.00 0.00 0.00 3.18
4475 7876 4.714632 TCTTCGTCCCAAAATTCTTGTCT 58.285 39.130 0.00 0.00 0.00 3.41
4476 7877 5.130350 TCTTCGTCCCAAAATTCTTGTCTT 58.870 37.500 0.00 0.00 0.00 3.01
4477 7878 6.292923 TCTTCGTCCCAAAATTCTTGTCTTA 58.707 36.000 0.00 0.00 0.00 2.10
4478 7879 6.426937 TCTTCGTCCCAAAATTCTTGTCTTAG 59.573 38.462 0.00 0.00 0.00 2.18
4479 7880 5.860611 TCGTCCCAAAATTCTTGTCTTAGA 58.139 37.500 0.00 0.00 0.00 2.10
4480 7881 6.472887 TCGTCCCAAAATTCTTGTCTTAGAT 58.527 36.000 0.00 0.00 0.00 1.98
4481 7882 6.940298 TCGTCCCAAAATTCTTGTCTTAGATT 59.060 34.615 0.00 0.00 0.00 2.40
4482 7883 7.447238 TCGTCCCAAAATTCTTGTCTTAGATTT 59.553 33.333 0.00 0.00 0.00 2.17
4483 7884 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4484 7885 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4485 7886 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4486 7887 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4529 7930 8.477419 ACTAATTCAAGACAAGAATTTTGGGA 57.523 30.769 6.48 0.00 41.54 4.37
4530 7931 8.360390 ACTAATTCAAGACAAGAATTTTGGGAC 58.640 33.333 6.48 0.00 41.54 4.46
4531 7932 4.829064 TCAAGACAAGAATTTTGGGACG 57.171 40.909 5.68 0.00 0.00 4.79
4532 7933 3.568007 TCAAGACAAGAATTTTGGGACGG 59.432 43.478 0.00 0.00 0.00 4.79
4533 7934 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4534 7935 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4535 7936 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4536 7937 2.107552 ACAAGAATTTTGGGACGGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
4537 7938 3.153919 CAAGAATTTTGGGACGGAGGAA 58.846 45.455 0.00 0.00 0.00 3.36
4538 7939 3.073274 AGAATTTTGGGACGGAGGAAG 57.927 47.619 0.00 0.00 0.00 3.46
4539 7940 2.375509 AGAATTTTGGGACGGAGGAAGT 59.624 45.455 0.00 0.00 0.00 3.01
4540 7941 3.585732 AGAATTTTGGGACGGAGGAAGTA 59.414 43.478 0.00 0.00 0.00 2.24
4541 7942 4.227527 AGAATTTTGGGACGGAGGAAGTAT 59.772 41.667 0.00 0.00 0.00 2.12
4542 7943 5.427481 AGAATTTTGGGACGGAGGAAGTATA 59.573 40.000 0.00 0.00 0.00 1.47
4543 7944 5.703730 ATTTTGGGACGGAGGAAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
4544 7945 5.502089 TTTTGGGACGGAGGAAGTATAAA 57.498 39.130 0.00 0.00 0.00 1.40
4545 7946 4.476628 TTGGGACGGAGGAAGTATAAAC 57.523 45.455 0.00 0.00 0.00 2.01
4546 7947 3.716431 TGGGACGGAGGAAGTATAAACT 58.284 45.455 0.00 0.00 37.65 2.66
4548 7949 5.271598 TGGGACGGAGGAAGTATAAACTTA 58.728 41.667 0.00 0.00 46.09 2.24
4549 7950 5.361857 TGGGACGGAGGAAGTATAAACTTAG 59.638 44.000 0.00 0.00 46.09 2.18
4550 7951 5.362143 GGGACGGAGGAAGTATAAACTTAGT 59.638 44.000 0.00 0.00 46.09 2.24
4551 7952 6.460814 GGGACGGAGGAAGTATAAACTTAGTC 60.461 46.154 0.00 0.00 46.09 2.59
4552 7953 6.096001 GGACGGAGGAAGTATAAACTTAGTCA 59.904 42.308 0.00 0.00 46.09 3.41
4553 7954 7.363268 GGACGGAGGAAGTATAAACTTAGTCAA 60.363 40.741 0.00 0.00 46.09 3.18
4554 7955 7.899973 ACGGAGGAAGTATAAACTTAGTCAAA 58.100 34.615 0.00 0.00 46.09 2.69
4555 7956 8.033626 ACGGAGGAAGTATAAACTTAGTCAAAG 58.966 37.037 0.00 0.00 46.09 2.77
4575 7976 4.950205 AGTTTAGAAGTTTGACCCGAGA 57.050 40.909 0.00 0.00 0.00 4.04
4576 7977 4.629092 AGTTTAGAAGTTTGACCCGAGAC 58.371 43.478 0.00 0.00 0.00 3.36
4577 7978 4.100498 AGTTTAGAAGTTTGACCCGAGACA 59.900 41.667 0.00 0.00 0.00 3.41
4578 7979 4.675976 TTAGAAGTTTGACCCGAGACAA 57.324 40.909 0.00 0.00 0.00 3.18
4579 7980 3.113260 AGAAGTTTGACCCGAGACAAG 57.887 47.619 0.00 0.00 0.00 3.16
4580 7981 2.143925 GAAGTTTGACCCGAGACAAGG 58.856 52.381 0.00 0.00 0.00 3.61
4581 7982 0.250338 AGTTTGACCCGAGACAAGGC 60.250 55.000 0.00 0.00 0.00 4.35
4582 7983 0.250338 GTTTGACCCGAGACAAGGCT 60.250 55.000 0.00 0.00 0.00 4.58
4583 7984 1.001633 GTTTGACCCGAGACAAGGCTA 59.998 52.381 0.00 0.00 0.00 3.93
4584 7985 0.606604 TTGACCCGAGACAAGGCTAC 59.393 55.000 0.00 0.00 0.00 3.58
4585 7986 1.255667 TGACCCGAGACAAGGCTACC 61.256 60.000 0.00 0.00 0.00 3.18
4586 7987 1.229082 ACCCGAGACAAGGCTACCA 60.229 57.895 0.00 0.00 0.00 3.25
4587 7988 0.617820 ACCCGAGACAAGGCTACCAT 60.618 55.000 0.00 0.00 0.00 3.55
4588 7989 0.179073 CCCGAGACAAGGCTACCATG 60.179 60.000 0.00 0.00 0.00 3.66
4589 7990 0.811616 CCGAGACAAGGCTACCATGC 60.812 60.000 0.00 0.00 0.00 4.06
4590 7991 1.148157 CGAGACAAGGCTACCATGCG 61.148 60.000 0.00 0.00 0.00 4.73
4591 7992 0.175760 GAGACAAGGCTACCATGCGA 59.824 55.000 0.00 0.00 0.00 5.10
4592 7993 0.613260 AGACAAGGCTACCATGCGAA 59.387 50.000 0.00 0.00 0.00 4.70
4593 7994 1.009829 GACAAGGCTACCATGCGAAG 58.990 55.000 0.00 0.00 0.00 3.79
4594 7995 0.324943 ACAAGGCTACCATGCGAAGT 59.675 50.000 0.00 0.00 0.00 3.01
4595 7996 1.553248 ACAAGGCTACCATGCGAAGTA 59.447 47.619 0.00 0.00 0.00 2.24
4596 7997 2.027561 ACAAGGCTACCATGCGAAGTAA 60.028 45.455 0.00 0.00 0.00 2.24
4597 7998 3.006940 CAAGGCTACCATGCGAAGTAAA 58.993 45.455 0.00 0.00 0.00 2.01
4598 7999 3.560636 AGGCTACCATGCGAAGTAAAT 57.439 42.857 0.00 0.00 0.00 1.40
4599 8000 4.682778 AGGCTACCATGCGAAGTAAATA 57.317 40.909 0.00 0.00 0.00 1.40
4600 8001 4.377897 AGGCTACCATGCGAAGTAAATAC 58.622 43.478 0.00 0.00 0.00 1.89
4601 8002 4.124238 GGCTACCATGCGAAGTAAATACA 58.876 43.478 0.00 0.00 0.00 2.29
4602 8003 4.755123 GGCTACCATGCGAAGTAAATACAT 59.245 41.667 0.00 0.00 0.00 2.29
4603 8004 5.929992 GGCTACCATGCGAAGTAAATACATA 59.070 40.000 0.00 0.00 0.00 2.29
4604 8005 6.128634 GGCTACCATGCGAAGTAAATACATAC 60.129 42.308 0.00 0.00 0.00 2.39
4605 8006 6.645415 GCTACCATGCGAAGTAAATACATACT 59.355 38.462 0.00 0.00 37.73 2.12
4606 8007 7.148787 GCTACCATGCGAAGTAAATACATACTC 60.149 40.741 0.00 0.00 35.09 2.59
4607 8008 6.578944 ACCATGCGAAGTAAATACATACTCA 58.421 36.000 0.00 0.00 35.09 3.41
4608 8009 7.217200 ACCATGCGAAGTAAATACATACTCAT 58.783 34.615 0.00 0.00 35.09 2.90
4609 8010 7.171508 ACCATGCGAAGTAAATACATACTCATG 59.828 37.037 0.00 0.00 36.43 3.07
4610 8011 7.384932 CCATGCGAAGTAAATACATACTCATGA 59.615 37.037 12.50 0.00 37.59 3.07
4611 8012 8.764287 CATGCGAAGTAAATACATACTCATGAA 58.236 33.333 0.00 0.00 37.59 2.57
4612 8013 8.887036 TGCGAAGTAAATACATACTCATGAAT 57.113 30.769 0.00 0.00 35.09 2.57
4613 8014 9.974980 TGCGAAGTAAATACATACTCATGAATA 57.025 29.630 0.00 0.00 35.09 1.75
4639 8040 6.208988 TGTAGCACTAACTTGATGAGTAGG 57.791 41.667 0.00 0.00 37.72 3.18
4640 8041 4.744795 AGCACTAACTTGATGAGTAGGG 57.255 45.455 0.00 0.00 37.72 3.53
4641 8042 3.118592 AGCACTAACTTGATGAGTAGGGC 60.119 47.826 0.00 0.00 37.72 5.19
4642 8043 3.448686 CACTAACTTGATGAGTAGGGCG 58.551 50.000 0.00 0.00 37.72 6.13
4643 8044 3.097614 ACTAACTTGATGAGTAGGGCGT 58.902 45.455 0.00 0.00 37.72 5.68
4644 8045 3.514309 ACTAACTTGATGAGTAGGGCGTT 59.486 43.478 0.00 0.00 37.72 4.84
4645 8046 3.418684 AACTTGATGAGTAGGGCGTTT 57.581 42.857 0.00 0.00 37.72 3.60
4646 8047 2.973945 ACTTGATGAGTAGGGCGTTTC 58.026 47.619 0.00 0.00 36.65 2.78
4647 8048 1.927174 CTTGATGAGTAGGGCGTTTCG 59.073 52.381 0.00 0.00 0.00 3.46
4648 8049 0.174845 TGATGAGTAGGGCGTTTCGG 59.825 55.000 0.00 0.00 0.00 4.30
4649 8050 0.175073 GATGAGTAGGGCGTTTCGGT 59.825 55.000 0.00 0.00 0.00 4.69
4650 8051 0.108329 ATGAGTAGGGCGTTTCGGTG 60.108 55.000 0.00 0.00 0.00 4.94
4651 8052 2.047560 AGTAGGGCGTTTCGGTGC 60.048 61.111 0.00 0.00 0.00 5.01
4656 8057 4.114997 GGCGTTTCGGTGCCCATG 62.115 66.667 0.00 0.00 45.73 3.66
4657 8058 4.776647 GCGTTTCGGTGCCCATGC 62.777 66.667 0.00 0.00 38.26 4.06
4658 8059 3.055719 CGTTTCGGTGCCCATGCT 61.056 61.111 0.00 0.00 38.71 3.79
4659 8060 2.877691 GTTTCGGTGCCCATGCTC 59.122 61.111 0.00 0.00 38.71 4.26
4660 8061 1.971167 GTTTCGGTGCCCATGCTCA 60.971 57.895 0.00 0.00 38.71 4.26
4661 8062 1.001020 TTTCGGTGCCCATGCTCAT 60.001 52.632 0.00 0.00 38.71 2.90
4662 8063 1.031571 TTTCGGTGCCCATGCTCATC 61.032 55.000 0.00 0.00 38.71 2.92
4663 8064 1.913951 TTCGGTGCCCATGCTCATCT 61.914 55.000 0.00 0.00 38.71 2.90
4664 8065 1.452651 CGGTGCCCATGCTCATCTT 60.453 57.895 0.00 0.00 38.71 2.40
4665 8066 1.442526 CGGTGCCCATGCTCATCTTC 61.443 60.000 0.00 0.00 38.71 2.87
4666 8067 0.394762 GGTGCCCATGCTCATCTTCA 60.395 55.000 0.00 0.00 38.71 3.02
4667 8068 0.737219 GTGCCCATGCTCATCTTCAC 59.263 55.000 0.00 0.00 38.71 3.18
4668 8069 0.394762 TGCCCATGCTCATCTTCACC 60.395 55.000 0.00 0.00 38.71 4.02
4669 8070 0.106819 GCCCATGCTCATCTTCACCT 60.107 55.000 0.00 0.00 33.53 4.00
4670 8071 1.676746 CCCATGCTCATCTTCACCTG 58.323 55.000 0.00 0.00 0.00 4.00
4671 8072 1.676746 CCATGCTCATCTTCACCTGG 58.323 55.000 0.00 0.00 0.00 4.45
4672 8073 1.064906 CCATGCTCATCTTCACCTGGT 60.065 52.381 0.00 0.00 0.00 4.00
4673 8074 2.619849 CCATGCTCATCTTCACCTGGTT 60.620 50.000 0.00 0.00 0.00 3.67
4674 8075 3.370846 CCATGCTCATCTTCACCTGGTTA 60.371 47.826 0.00 0.00 0.00 2.85
4675 8076 3.616956 TGCTCATCTTCACCTGGTTAG 57.383 47.619 0.00 0.00 0.00 2.34
4676 8077 3.173151 TGCTCATCTTCACCTGGTTAGA 58.827 45.455 10.02 10.02 0.00 2.10
4677 8078 3.582647 TGCTCATCTTCACCTGGTTAGAA 59.417 43.478 11.28 6.08 0.00 2.10
4678 8079 4.041567 TGCTCATCTTCACCTGGTTAGAAA 59.958 41.667 11.28 4.20 0.00 2.52
4679 8080 5.003804 GCTCATCTTCACCTGGTTAGAAAA 58.996 41.667 11.28 0.00 0.00 2.29
4680 8081 5.106515 GCTCATCTTCACCTGGTTAGAAAAC 60.107 44.000 11.28 1.18 34.66 2.43
4681 8082 5.935945 TCATCTTCACCTGGTTAGAAAACA 58.064 37.500 11.28 0.00 37.34 2.83
4682 8083 6.361433 TCATCTTCACCTGGTTAGAAAACAA 58.639 36.000 11.28 0.00 37.34 2.83
4683 8084 7.004086 TCATCTTCACCTGGTTAGAAAACAAT 58.996 34.615 11.28 0.00 37.34 2.71
4684 8085 7.505585 TCATCTTCACCTGGTTAGAAAACAATT 59.494 33.333 11.28 0.00 37.34 2.32
4685 8086 7.654022 TCTTCACCTGGTTAGAAAACAATTT 57.346 32.000 0.00 0.00 37.34 1.82
4686 8087 7.488322 TCTTCACCTGGTTAGAAAACAATTTG 58.512 34.615 0.00 0.00 37.34 2.32
4687 8088 6.783708 TCACCTGGTTAGAAAACAATTTGT 57.216 33.333 0.00 0.00 37.34 2.83
4688 8089 7.883391 TCACCTGGTTAGAAAACAATTTGTA 57.117 32.000 1.76 0.00 37.34 2.41
4689 8090 8.294954 TCACCTGGTTAGAAAACAATTTGTAA 57.705 30.769 1.76 0.00 37.34 2.41
4690 8091 8.750298 TCACCTGGTTAGAAAACAATTTGTAAA 58.250 29.630 1.76 0.00 36.41 2.01
4691 8092 9.372369 CACCTGGTTAGAAAACAATTTGTAAAA 57.628 29.630 1.76 0.00 36.41 1.52
4692 8093 9.945904 ACCTGGTTAGAAAACAATTTGTAAAAA 57.054 25.926 1.76 0.00 36.41 1.94
4749 8150 7.682593 TTTTATGCATAGACAATTTGATGCG 57.317 32.000 6.50 0.00 46.15 4.73
4750 8151 4.906065 ATGCATAGACAATTTGATGCGT 57.094 36.364 0.00 11.55 46.15 5.24
4751 8152 4.018649 TGCATAGACAATTTGATGCGTG 57.981 40.909 13.62 4.19 46.15 5.34
4752 8153 3.688673 TGCATAGACAATTTGATGCGTGA 59.311 39.130 13.62 0.00 46.15 4.35
4753 8154 4.201841 TGCATAGACAATTTGATGCGTGAG 60.202 41.667 13.62 0.00 46.15 3.51
4754 8155 4.034394 GCATAGACAATTTGATGCGTGAGA 59.966 41.667 2.79 0.00 35.75 3.27
4755 8156 5.496387 CATAGACAATTTGATGCGTGAGAC 58.504 41.667 2.79 0.00 0.00 3.36
4756 8157 3.668447 AGACAATTTGATGCGTGAGACT 58.332 40.909 2.79 0.00 0.00 3.24
4757 8158 3.681897 AGACAATTTGATGCGTGAGACTC 59.318 43.478 2.79 0.00 0.00 3.36
4758 8159 2.413112 ACAATTTGATGCGTGAGACTCG 59.587 45.455 2.79 0.00 0.00 4.18
4769 8170 4.746836 CGTGAGACTCGCTCTAAATTTC 57.253 45.455 13.89 0.00 44.27 2.17
4770 8171 4.166523 CGTGAGACTCGCTCTAAATTTCA 58.833 43.478 13.89 0.00 44.27 2.69
4771 8172 4.621460 CGTGAGACTCGCTCTAAATTTCAA 59.379 41.667 13.89 0.00 44.27 2.69
4772 8173 5.220117 CGTGAGACTCGCTCTAAATTTCAAG 60.220 44.000 13.89 0.00 44.27 3.02
4773 8174 5.635700 GTGAGACTCGCTCTAAATTTCAAGT 59.364 40.000 8.82 0.00 44.27 3.16
4774 8175 6.146347 GTGAGACTCGCTCTAAATTTCAAGTT 59.854 38.462 8.82 0.00 44.27 2.66
4775 8176 7.328737 GTGAGACTCGCTCTAAATTTCAAGTTA 59.671 37.037 8.82 0.00 44.27 2.24
4776 8177 8.035394 TGAGACTCGCTCTAAATTTCAAGTTAT 58.965 33.333 0.00 0.00 44.27 1.89
4777 8178 8.779354 AGACTCGCTCTAAATTTCAAGTTATT 57.221 30.769 0.00 0.00 0.00 1.40
4778 8179 9.220767 AGACTCGCTCTAAATTTCAAGTTATTT 57.779 29.630 0.00 0.00 0.00 1.40
4779 8180 9.267096 GACTCGCTCTAAATTTCAAGTTATTTG 57.733 33.333 0.00 0.00 38.17 2.32
4780 8181 8.237267 ACTCGCTCTAAATTTCAAGTTATTTGG 58.763 33.333 0.00 0.00 37.39 3.28
4781 8182 8.330466 TCGCTCTAAATTTCAAGTTATTTGGA 57.670 30.769 0.00 0.00 37.39 3.53
4782 8183 8.234546 TCGCTCTAAATTTCAAGTTATTTGGAC 58.765 33.333 0.00 0.00 37.39 4.02
4783 8184 8.020819 CGCTCTAAATTTCAAGTTATTTGGACA 58.979 33.333 0.00 0.00 37.39 4.02
4784 8185 9.860898 GCTCTAAATTTCAAGTTATTTGGACAT 57.139 29.630 0.00 0.00 37.39 3.06
4789 8190 9.918630 AAATTTCAAGTTATTTGGACATCTGAG 57.081 29.630 0.00 0.00 37.39 3.35
4790 8191 6.500684 TTCAAGTTATTTGGACATCTGAGC 57.499 37.500 0.00 0.00 37.39 4.26
4791 8192 5.559770 TCAAGTTATTTGGACATCTGAGCA 58.440 37.500 0.00 0.00 37.39 4.26
4792 8193 5.645067 TCAAGTTATTTGGACATCTGAGCAG 59.355 40.000 0.00 0.00 37.39 4.24
4793 8194 3.944015 AGTTATTTGGACATCTGAGCAGC 59.056 43.478 0.00 0.00 0.00 5.25
4794 8195 2.803030 ATTTGGACATCTGAGCAGCT 57.197 45.000 0.00 0.00 0.00 4.24
4795 8196 2.574006 TTTGGACATCTGAGCAGCTT 57.426 45.000 0.00 0.00 0.00 3.74
4796 8197 2.574006 TTGGACATCTGAGCAGCTTT 57.426 45.000 0.00 0.00 0.00 3.51
4797 8198 2.105006 TGGACATCTGAGCAGCTTTC 57.895 50.000 0.00 0.00 0.00 2.62
4798 8199 1.348696 TGGACATCTGAGCAGCTTTCA 59.651 47.619 0.00 0.00 0.00 2.69
4799 8200 2.224597 TGGACATCTGAGCAGCTTTCAA 60.225 45.455 0.00 0.00 0.00 2.69
4800 8201 2.161211 GGACATCTGAGCAGCTTTCAAC 59.839 50.000 0.00 0.00 0.00 3.18
4801 8202 2.810274 GACATCTGAGCAGCTTTCAACA 59.190 45.455 0.00 0.00 0.00 3.33
4802 8203 3.216800 ACATCTGAGCAGCTTTCAACAA 58.783 40.909 0.00 0.00 0.00 2.83
4803 8204 3.633525 ACATCTGAGCAGCTTTCAACAAA 59.366 39.130 0.00 0.00 0.00 2.83
4804 8205 3.976793 TCTGAGCAGCTTTCAACAAAG 57.023 42.857 0.00 0.00 41.92 2.77
4805 8206 3.544684 TCTGAGCAGCTTTCAACAAAGA 58.455 40.909 0.00 0.00 41.60 2.52
4806 8207 3.947196 TCTGAGCAGCTTTCAACAAAGAA 59.053 39.130 0.00 0.00 41.60 2.52
4807 8208 4.036027 TCTGAGCAGCTTTCAACAAAGAAG 59.964 41.667 0.00 0.00 41.60 2.85
4808 8209 3.947196 TGAGCAGCTTTCAACAAAGAAGA 59.053 39.130 0.00 0.00 41.60 2.87
4809 8210 4.201950 TGAGCAGCTTTCAACAAAGAAGAC 60.202 41.667 0.00 0.00 41.60 3.01
4810 8211 3.696051 AGCAGCTTTCAACAAAGAAGACA 59.304 39.130 0.00 0.00 41.60 3.41
4811 8212 4.158394 AGCAGCTTTCAACAAAGAAGACAA 59.842 37.500 0.00 0.00 41.60 3.18
4812 8213 4.864247 GCAGCTTTCAACAAAGAAGACAAA 59.136 37.500 0.00 0.00 41.60 2.83
4813 8214 5.521372 GCAGCTTTCAACAAAGAAGACAAAT 59.479 36.000 0.00 0.00 41.60 2.32
4814 8215 6.036408 GCAGCTTTCAACAAAGAAGACAAATT 59.964 34.615 0.00 0.00 41.60 1.82
4815 8216 7.396419 CAGCTTTCAACAAAGAAGACAAATTG 58.604 34.615 0.00 0.00 41.60 2.32
4816 8217 6.536224 AGCTTTCAACAAAGAAGACAAATTGG 59.464 34.615 0.00 0.00 41.60 3.16
4817 8218 6.238184 GCTTTCAACAAAGAAGACAAATTGGG 60.238 38.462 0.00 0.00 41.60 4.12
4818 8219 4.692228 TCAACAAAGAAGACAAATTGGGC 58.308 39.130 0.00 0.00 0.00 5.36
4819 8220 3.751479 ACAAAGAAGACAAATTGGGCC 57.249 42.857 0.00 0.00 0.00 5.80
4820 8221 3.037549 ACAAAGAAGACAAATTGGGCCA 58.962 40.909 0.00 0.00 0.00 5.36
4821 8222 3.454082 ACAAAGAAGACAAATTGGGCCAA 59.546 39.130 23.33 23.33 0.00 4.52
4822 8223 4.080638 ACAAAGAAGACAAATTGGGCCAAA 60.081 37.500 24.97 0.00 0.00 3.28
4823 8224 4.769345 AAGAAGACAAATTGGGCCAAAA 57.231 36.364 24.97 0.31 0.00 2.44
4824 8225 4.071961 AGAAGACAAATTGGGCCAAAAC 57.928 40.909 24.97 12.44 0.00 2.43
4825 8226 3.454082 AGAAGACAAATTGGGCCAAAACA 59.546 39.130 24.97 0.00 0.00 2.83
4826 8227 3.473923 AGACAAATTGGGCCAAAACAG 57.526 42.857 24.97 15.48 0.00 3.16
4827 8228 2.771372 AGACAAATTGGGCCAAAACAGT 59.229 40.909 24.97 18.56 0.00 3.55
4828 8229 3.964031 AGACAAATTGGGCCAAAACAGTA 59.036 39.130 24.97 0.00 0.00 2.74
4829 8230 4.407296 AGACAAATTGGGCCAAAACAGTAA 59.593 37.500 24.97 0.00 0.00 2.24
4830 8231 5.104259 ACAAATTGGGCCAAAACAGTAAA 57.896 34.783 24.97 0.00 0.00 2.01
4831 8232 4.878971 ACAAATTGGGCCAAAACAGTAAAC 59.121 37.500 24.97 0.00 0.00 2.01
4832 8233 4.762289 AATTGGGCCAAAACAGTAAACA 57.238 36.364 24.97 0.00 0.00 2.83
4833 8234 4.972751 ATTGGGCCAAAACAGTAAACAT 57.027 36.364 24.97 0.00 0.00 2.71
4834 8235 6.426646 AATTGGGCCAAAACAGTAAACATA 57.573 33.333 24.97 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.158696 AGCATTGGAGAACCATAGCTCC 60.159 50.000 0.00 0.00 46.28 4.70
7 8 3.205784 AGCATTGGAGAACCATAGCTC 57.794 47.619 0.00 0.00 46.28 4.09
11 1343 4.842531 TCTGAAGCATTGGAGAACCATA 57.157 40.909 0.00 0.00 46.34 2.74
78 1411 0.038892 GCACGTTAGACCGACCTGAA 60.039 55.000 0.00 0.00 0.00 3.02
267 3553 2.556622 TCCCTTTTCGCTTGTCATTTCC 59.443 45.455 0.00 0.00 0.00 3.13
275 3561 2.185004 TCTCCTTCCCTTTTCGCTTG 57.815 50.000 0.00 0.00 0.00 4.01
288 3575 7.650504 GGCGTTTTTATACAACTTTTTCTCCTT 59.349 33.333 0.00 0.00 0.00 3.36
342 3629 4.021456 GTCTCGGGTTGGAATTGGAATTTT 60.021 41.667 0.00 0.00 0.00 1.82
403 3690 2.727071 GGATGGGAGGAGGGAGGGA 61.727 68.421 0.00 0.00 0.00 4.20
404 3691 2.122189 GGATGGGAGGAGGGAGGG 60.122 72.222 0.00 0.00 0.00 4.30
407 3694 2.705410 CTGGGATGGGAGGAGGGA 59.295 66.667 0.00 0.00 0.00 4.20
498 3788 1.879562 AAACGAACGAGCGCGGTAAC 61.880 55.000 12.41 0.00 37.73 2.50
507 3797 1.071567 GAGGCCGAGAAACGAACGAG 61.072 60.000 0.00 0.00 45.77 4.18
581 3871 1.555477 AAAACCAGATACGGGCGGGA 61.555 55.000 0.00 0.00 0.00 5.14
584 3874 1.426041 CCGAAAACCAGATACGGGCG 61.426 60.000 0.00 0.00 39.92 6.13
604 3894 1.153449 TAAATCGAGCCGTGCAGGG 60.153 57.895 21.22 21.22 41.48 4.45
697 3987 1.066303 CCAACAAAACGCAGCCACTAA 59.934 47.619 0.00 0.00 0.00 2.24
698 3988 0.665835 CCAACAAAACGCAGCCACTA 59.334 50.000 0.00 0.00 0.00 2.74
699 3989 1.034838 TCCAACAAAACGCAGCCACT 61.035 50.000 0.00 0.00 0.00 4.00
700 3990 0.031994 ATCCAACAAAACGCAGCCAC 59.968 50.000 0.00 0.00 0.00 5.01
874 4168 8.146053 TGATTTACTCAGAGAATAAGACCCAA 57.854 34.615 3.79 0.00 0.00 4.12
971 4268 1.070445 GTGATCGGGAGCAGATGGG 59.930 63.158 0.00 0.00 0.00 4.00
972 4269 1.300465 CGTGATCGGGAGCAGATGG 60.300 63.158 0.00 0.00 0.00 3.51
1060 4358 5.344743 TCTTCCTTGACATGCTACCTAAG 57.655 43.478 0.00 0.00 0.00 2.18
1239 4537 2.093658 TGACTTATTCAAGGGACTCGCC 60.094 50.000 0.00 0.00 38.49 5.54
1241 4539 4.822026 AGTTGACTTATTCAAGGGACTCG 58.178 43.478 0.00 0.00 45.23 4.18
1299 4597 5.769662 TGAACAAGAAATAGTGGCAGTCAAT 59.230 36.000 0.00 0.00 0.00 2.57
1409 4709 4.460731 TCAAAACCAACATGATATCGCCAA 59.539 37.500 0.00 0.00 0.00 4.52
1432 4732 8.939929 CACAACACATTCTTGTTACATCTCTAT 58.060 33.333 0.00 0.00 37.62 1.98
1478 4778 9.956720 CTCAAAATAAATGGGTGTCATATCTTC 57.043 33.333 0.00 0.00 34.44 2.87
1583 4884 6.166279 CAGTGAGCCAGATAAGTACAAGAAA 58.834 40.000 0.00 0.00 0.00 2.52
1791 5092 7.857885 GTCTGAGTTAGTTTGTCCAGAATTTTG 59.142 37.037 0.00 0.00 33.20 2.44
1832 5133 4.642885 AGGGACGACAAGAACAAAAATGAA 59.357 37.500 0.00 0.00 0.00 2.57
1850 5151 9.251440 ACTAAAAACCAAGGAAATTATAGGGAC 57.749 33.333 0.00 0.00 0.00 4.46
1897 5198 1.501169 GCACAATCCTGCCACAAAAC 58.499 50.000 0.00 0.00 0.00 2.43
1933 5234 1.028868 GTGACTTGGATGGAGGCTGC 61.029 60.000 0.00 0.00 0.00 5.25
2149 5450 3.128349 TCGTGTGTTTACTTGAAGCTCC 58.872 45.455 0.00 0.00 0.00 4.70
2165 5466 1.967319 AAAAGACCACTGCATCGTGT 58.033 45.000 5.48 0.00 33.07 4.49
2166 5467 2.605338 CCAAAAAGACCACTGCATCGTG 60.605 50.000 0.00 0.00 34.71 4.35
2167 5468 1.608590 CCAAAAAGACCACTGCATCGT 59.391 47.619 0.00 0.00 0.00 3.73
2168 5469 1.608590 ACCAAAAAGACCACTGCATCG 59.391 47.619 0.00 0.00 0.00 3.84
2169 5470 3.733443 AACCAAAAAGACCACTGCATC 57.267 42.857 0.00 0.00 0.00 3.91
2171 5472 2.564947 ACAAACCAAAAAGACCACTGCA 59.435 40.909 0.00 0.00 0.00 4.41
2172 5473 2.929398 CACAAACCAAAAAGACCACTGC 59.071 45.455 0.00 0.00 0.00 4.40
2326 5671 3.553511 CACACACACACAGAGAGAGAAAC 59.446 47.826 0.00 0.00 0.00 2.78
2334 5679 1.725641 ACACACACACACACACAGAG 58.274 50.000 0.00 0.00 0.00 3.35
2336 5681 1.327460 GCTACACACACACACACACAG 59.673 52.381 0.00 0.00 0.00 3.66
2373 5742 8.762149 AATATTGTCACGCAAAAATATACGAC 57.238 30.769 0.00 0.00 40.91 4.34
2374 5743 9.428363 GAAATATTGTCACGCAAAAATATACGA 57.572 29.630 0.00 0.00 40.91 3.43
2375 5744 9.216087 TGAAATATTGTCACGCAAAAATATACG 57.784 29.630 0.00 0.00 40.91 3.06
2466 5835 7.183112 TGTTTAACAAAGGGGGTATCTATCTGA 59.817 37.037 0.00 0.00 0.00 3.27
2547 5916 0.457851 CAACTGGTTTTTGGGCGACA 59.542 50.000 0.00 0.00 0.00 4.35
3473 6843 8.781067 TTTGACGCAATGAAGCATTATAATAC 57.219 30.769 0.00 0.00 32.35 1.89
3474 6844 9.964303 AATTTGACGCAATGAAGCATTATAATA 57.036 25.926 0.00 0.00 32.35 0.98
3475 6845 8.876275 AATTTGACGCAATGAAGCATTATAAT 57.124 26.923 0.00 0.00 32.35 1.28
3477 6847 8.700722 AAAATTTGACGCAATGAAGCATTATA 57.299 26.923 0.00 0.00 32.35 0.98
3478 6848 7.599630 AAAATTTGACGCAATGAAGCATTAT 57.400 28.000 0.00 0.00 32.35 1.28
3517 6887 4.284039 CATCCTCGATGACTGAAGCACAG 61.284 52.174 8.93 8.93 42.09 3.66
3566 6940 5.041191 ACTTCTGACTCTGTTTTGGACAT 57.959 39.130 0.00 0.00 37.69 3.06
3624 6998 3.548818 GGTGACTTACAAGTTTGCAGCTG 60.549 47.826 10.11 10.11 39.88 4.24
3720 7094 0.244994 AGTCGACTGCTAGCCTGTTG 59.755 55.000 19.30 14.53 0.00 3.33
3732 7106 4.196193 CTGTGAGAGAGGATAAGTCGACT 58.804 47.826 13.58 13.58 0.00 4.18
3814 7188 4.141482 GGGTTATCTAATGCCCTTCAGACA 60.141 45.833 0.00 0.00 38.12 3.41
4117 7502 5.535783 TCACCTGATTTCTTCATTCTTGCAA 59.464 36.000 0.00 0.00 32.72 4.08
4121 7506 7.771927 AACATCACCTGATTTCTTCATTCTT 57.228 32.000 0.00 0.00 32.72 2.52
4192 7577 5.045578 ACCAAGACAGGTTCTGCATATTAGT 60.046 40.000 0.00 0.00 39.34 2.24
4411 7812 6.855763 ACATCCACAATACCAAATCAATGT 57.144 33.333 0.00 0.00 0.00 2.71
4412 7813 9.820725 ATTAACATCCACAATACCAAATCAATG 57.179 29.630 0.00 0.00 0.00 2.82
4445 7846 8.024145 AGAATTTTGGGACGAAGAGAGTATAT 57.976 34.615 0.00 0.00 0.00 0.86
4446 7847 7.419711 AGAATTTTGGGACGAAGAGAGTATA 57.580 36.000 0.00 0.00 0.00 1.47
4447 7848 6.301169 AGAATTTTGGGACGAAGAGAGTAT 57.699 37.500 0.00 0.00 0.00 2.12
4448 7849 5.740290 AGAATTTTGGGACGAAGAGAGTA 57.260 39.130 0.00 0.00 0.00 2.59
4449 7850 4.625607 AGAATTTTGGGACGAAGAGAGT 57.374 40.909 0.00 0.00 0.00 3.24
4450 7851 4.757149 ACAAGAATTTTGGGACGAAGAGAG 59.243 41.667 0.00 0.00 0.00 3.20
4451 7852 4.714632 ACAAGAATTTTGGGACGAAGAGA 58.285 39.130 0.00 0.00 0.00 3.10
4452 7853 4.757149 AGACAAGAATTTTGGGACGAAGAG 59.243 41.667 0.00 0.00 0.00 2.85
4453 7854 4.714632 AGACAAGAATTTTGGGACGAAGA 58.285 39.130 0.00 0.00 0.00 2.87
4454 7855 5.438761 AAGACAAGAATTTTGGGACGAAG 57.561 39.130 0.00 0.00 0.00 3.79
4455 7856 6.292923 TCTAAGACAAGAATTTTGGGACGAA 58.707 36.000 0.00 0.00 0.00 3.85
4456 7857 5.860611 TCTAAGACAAGAATTTTGGGACGA 58.139 37.500 0.00 0.00 0.00 4.20
4457 7858 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4458 7859 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4459 7860 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4460 7861 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
4503 7904 8.923270 TCCCAAAATTCTTGTCTTGAATTAGTT 58.077 29.630 0.00 0.00 41.54 2.24
4504 7905 8.360390 GTCCCAAAATTCTTGTCTTGAATTAGT 58.640 33.333 0.00 0.00 41.54 2.24
4505 7906 7.538678 CGTCCCAAAATTCTTGTCTTGAATTAG 59.461 37.037 0.00 0.00 41.54 1.73
4506 7907 7.367285 CGTCCCAAAATTCTTGTCTTGAATTA 58.633 34.615 0.00 0.00 41.54 1.40
4507 7908 6.215845 CGTCCCAAAATTCTTGTCTTGAATT 58.784 36.000 0.00 0.00 43.44 2.17
4508 7909 5.278957 CCGTCCCAAAATTCTTGTCTTGAAT 60.279 40.000 0.00 0.00 35.88 2.57
4509 7910 4.037446 CCGTCCCAAAATTCTTGTCTTGAA 59.963 41.667 0.00 0.00 0.00 2.69
4510 7911 3.568007 CCGTCCCAAAATTCTTGTCTTGA 59.432 43.478 0.00 0.00 0.00 3.02
4511 7912 3.568007 TCCGTCCCAAAATTCTTGTCTTG 59.432 43.478 0.00 0.00 0.00 3.02
4512 7913 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4513 7914 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4514 7915 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4515 7916 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
4516 7917 2.790433 TCCTCCGTCCCAAAATTCTTG 58.210 47.619 0.00 0.00 0.00 3.02
4517 7918 3.181433 ACTTCCTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
4518 7919 2.375509 ACTTCCTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
4519 7920 2.791655 ACTTCCTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
4520 7921 2.971901 ACTTCCTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4521 7922 5.703730 TTATACTTCCTCCGTCCCAAAAT 57.296 39.130 0.00 0.00 0.00 1.82
4522 7923 5.013391 AGTTTATACTTCCTCCGTCCCAAAA 59.987 40.000 0.00 0.00 0.00 2.44
4523 7924 4.533311 AGTTTATACTTCCTCCGTCCCAAA 59.467 41.667 0.00 0.00 0.00 3.28
4524 7925 4.098894 AGTTTATACTTCCTCCGTCCCAA 58.901 43.478 0.00 0.00 0.00 4.12
4525 7926 3.716431 AGTTTATACTTCCTCCGTCCCA 58.284 45.455 0.00 0.00 0.00 4.37
4526 7927 4.750021 AAGTTTATACTTCCTCCGTCCC 57.250 45.455 0.00 0.00 40.60 4.46
4527 7928 6.096001 TGACTAAGTTTATACTTCCTCCGTCC 59.904 42.308 1.52 0.00 43.45 4.79
4528 7929 7.093322 TGACTAAGTTTATACTTCCTCCGTC 57.907 40.000 1.52 4.40 43.45 4.79
4529 7930 7.472334 TTGACTAAGTTTATACTTCCTCCGT 57.528 36.000 1.52 0.00 43.45 4.69
4530 7931 8.033626 ACTTTGACTAAGTTTATACTTCCTCCG 58.966 37.037 1.52 0.00 44.73 4.63
4545 7946 8.343366 GGGTCAAACTTCTAAACTTTGACTAAG 58.657 37.037 17.48 0.00 46.90 2.18
4546 7947 7.011669 CGGGTCAAACTTCTAAACTTTGACTAA 59.988 37.037 17.48 0.00 46.90 2.24
4547 7948 6.480981 CGGGTCAAACTTCTAAACTTTGACTA 59.519 38.462 17.48 0.00 46.90 2.59
4548 7949 5.296035 CGGGTCAAACTTCTAAACTTTGACT 59.704 40.000 17.48 0.00 46.90 3.41
4549 7950 5.295045 TCGGGTCAAACTTCTAAACTTTGAC 59.705 40.000 12.12 12.12 46.96 3.18
4550 7951 5.430007 TCGGGTCAAACTTCTAAACTTTGA 58.570 37.500 0.00 0.00 32.69 2.69
4551 7952 5.526111 TCTCGGGTCAAACTTCTAAACTTTG 59.474 40.000 0.00 0.00 0.00 2.77
4552 7953 5.526479 GTCTCGGGTCAAACTTCTAAACTTT 59.474 40.000 0.00 0.00 0.00 2.66
4553 7954 5.055144 GTCTCGGGTCAAACTTCTAAACTT 58.945 41.667 0.00 0.00 0.00 2.66
4554 7955 4.100498 TGTCTCGGGTCAAACTTCTAAACT 59.900 41.667 0.00 0.00 0.00 2.66
4555 7956 4.374399 TGTCTCGGGTCAAACTTCTAAAC 58.626 43.478 0.00 0.00 0.00 2.01
4556 7957 4.675976 TGTCTCGGGTCAAACTTCTAAA 57.324 40.909 0.00 0.00 0.00 1.85
4557 7958 4.502604 CCTTGTCTCGGGTCAAACTTCTAA 60.503 45.833 0.00 0.00 0.00 2.10
4558 7959 3.006537 CCTTGTCTCGGGTCAAACTTCTA 59.993 47.826 0.00 0.00 0.00 2.10
4559 7960 2.224305 CCTTGTCTCGGGTCAAACTTCT 60.224 50.000 0.00 0.00 0.00 2.85
4560 7961 2.143925 CCTTGTCTCGGGTCAAACTTC 58.856 52.381 0.00 0.00 0.00 3.01
4561 7962 1.814248 GCCTTGTCTCGGGTCAAACTT 60.814 52.381 0.00 0.00 0.00 2.66
4562 7963 0.250338 GCCTTGTCTCGGGTCAAACT 60.250 55.000 0.00 0.00 0.00 2.66
4563 7964 0.250338 AGCCTTGTCTCGGGTCAAAC 60.250 55.000 0.00 0.00 0.00 2.93
4564 7965 1.001633 GTAGCCTTGTCTCGGGTCAAA 59.998 52.381 0.00 0.00 33.64 2.69
4565 7966 0.606604 GTAGCCTTGTCTCGGGTCAA 59.393 55.000 0.00 0.00 33.64 3.18
4566 7967 1.255667 GGTAGCCTTGTCTCGGGTCA 61.256 60.000 0.00 0.00 33.64 4.02
4567 7968 1.255667 TGGTAGCCTTGTCTCGGGTC 61.256 60.000 0.00 0.00 33.64 4.46
4568 7969 0.617820 ATGGTAGCCTTGTCTCGGGT 60.618 55.000 0.00 0.00 36.09 5.28
4569 7970 0.179073 CATGGTAGCCTTGTCTCGGG 60.179 60.000 0.00 0.00 0.00 5.14
4570 7971 0.811616 GCATGGTAGCCTTGTCTCGG 60.812 60.000 0.00 0.00 32.20 4.63
4571 7972 1.148157 CGCATGGTAGCCTTGTCTCG 61.148 60.000 0.00 0.00 32.20 4.04
4572 7973 0.175760 TCGCATGGTAGCCTTGTCTC 59.824 55.000 0.00 0.00 32.20 3.36
4573 7974 0.613260 TTCGCATGGTAGCCTTGTCT 59.387 50.000 0.00 0.00 32.20 3.41
4574 7975 1.009829 CTTCGCATGGTAGCCTTGTC 58.990 55.000 0.00 0.00 32.20 3.18
4575 7976 0.324943 ACTTCGCATGGTAGCCTTGT 59.675 50.000 0.00 0.00 32.20 3.16
4576 7977 2.309528 TACTTCGCATGGTAGCCTTG 57.690 50.000 0.00 0.00 0.00 3.61
4577 7978 3.343941 TTTACTTCGCATGGTAGCCTT 57.656 42.857 0.00 0.00 0.00 4.35
4578 7979 3.560636 ATTTACTTCGCATGGTAGCCT 57.439 42.857 0.00 0.00 0.00 4.58
4579 7980 4.124238 TGTATTTACTTCGCATGGTAGCC 58.876 43.478 0.00 0.00 0.00 3.93
4580 7981 5.924475 ATGTATTTACTTCGCATGGTAGC 57.076 39.130 0.00 0.00 0.00 3.58
4581 7982 7.865889 TGAGTATGTATTTACTTCGCATGGTAG 59.134 37.037 0.00 0.00 32.59 3.18
4582 7983 7.718525 TGAGTATGTATTTACTTCGCATGGTA 58.281 34.615 0.00 0.00 32.59 3.25
4583 7984 6.578944 TGAGTATGTATTTACTTCGCATGGT 58.421 36.000 0.00 0.00 32.59 3.55
4584 7985 7.384932 TCATGAGTATGTATTTACTTCGCATGG 59.615 37.037 0.00 0.00 34.26 3.66
4585 7986 8.298030 TCATGAGTATGTATTTACTTCGCATG 57.702 34.615 0.00 0.00 35.73 4.06
4586 7987 8.887036 TTCATGAGTATGTATTTACTTCGCAT 57.113 30.769 0.00 0.00 35.73 4.73
4587 7988 8.887036 ATTCATGAGTATGTATTTACTTCGCA 57.113 30.769 0.00 0.00 35.73 5.10
4613 8014 8.580720 CCTACTCATCAAGTTAGTGCTACATAT 58.419 37.037 0.00 0.00 39.55 1.78
4614 8015 7.014326 CCCTACTCATCAAGTTAGTGCTACATA 59.986 40.741 0.00 0.00 39.55 2.29
4615 8016 6.183360 CCCTACTCATCAAGTTAGTGCTACAT 60.183 42.308 0.00 0.00 39.55 2.29
4616 8017 5.127194 CCCTACTCATCAAGTTAGTGCTACA 59.873 44.000 0.00 0.00 39.55 2.74
4617 8018 5.593010 CCCTACTCATCAAGTTAGTGCTAC 58.407 45.833 0.00 0.00 39.55 3.58
4618 8019 4.099573 GCCCTACTCATCAAGTTAGTGCTA 59.900 45.833 0.00 0.00 39.55 3.49
4619 8020 3.118592 GCCCTACTCATCAAGTTAGTGCT 60.119 47.826 0.00 0.00 39.55 4.40
4620 8021 3.198872 GCCCTACTCATCAAGTTAGTGC 58.801 50.000 0.00 0.00 39.55 4.40
4621 8022 3.119101 ACGCCCTACTCATCAAGTTAGTG 60.119 47.826 0.00 0.00 39.55 2.74
4622 8023 3.097614 ACGCCCTACTCATCAAGTTAGT 58.902 45.455 0.00 0.00 39.55 2.24
4623 8024 3.802948 ACGCCCTACTCATCAAGTTAG 57.197 47.619 0.00 0.00 39.55 2.34
4624 8025 4.501071 GAAACGCCCTACTCATCAAGTTA 58.499 43.478 0.00 0.00 39.55 2.24
4625 8026 3.335579 GAAACGCCCTACTCATCAAGTT 58.664 45.455 0.00 0.00 39.55 2.66
4626 8027 2.674177 CGAAACGCCCTACTCATCAAGT 60.674 50.000 0.00 0.00 42.33 3.16
4627 8028 1.927174 CGAAACGCCCTACTCATCAAG 59.073 52.381 0.00 0.00 0.00 3.02
4628 8029 1.404986 CCGAAACGCCCTACTCATCAA 60.405 52.381 0.00 0.00 0.00 2.57
4629 8030 0.174845 CCGAAACGCCCTACTCATCA 59.825 55.000 0.00 0.00 0.00 3.07
4630 8031 0.175073 ACCGAAACGCCCTACTCATC 59.825 55.000 0.00 0.00 0.00 2.92
4631 8032 0.108329 CACCGAAACGCCCTACTCAT 60.108 55.000 0.00 0.00 0.00 2.90
4632 8033 1.290955 CACCGAAACGCCCTACTCA 59.709 57.895 0.00 0.00 0.00 3.41
4633 8034 2.098831 GCACCGAAACGCCCTACTC 61.099 63.158 0.00 0.00 0.00 2.59
4634 8035 2.047560 GCACCGAAACGCCCTACT 60.048 61.111 0.00 0.00 0.00 2.57
4635 8036 3.122971 GGCACCGAAACGCCCTAC 61.123 66.667 0.00 0.00 42.82 3.18
4648 8049 0.737219 GTGAAGATGAGCATGGGCAC 59.263 55.000 0.00 0.00 44.61 5.01
4649 8050 0.394762 GGTGAAGATGAGCATGGGCA 60.395 55.000 0.00 0.00 44.61 5.36
4650 8051 0.106819 AGGTGAAGATGAGCATGGGC 60.107 55.000 0.00 0.00 41.61 5.36
4651 8052 1.676746 CAGGTGAAGATGAGCATGGG 58.323 55.000 0.00 0.00 0.00 4.00
4652 8053 1.064906 ACCAGGTGAAGATGAGCATGG 60.065 52.381 0.00 0.00 0.00 3.66
4653 8054 2.414994 ACCAGGTGAAGATGAGCATG 57.585 50.000 0.00 0.00 0.00 4.06
4654 8055 3.776969 TCTAACCAGGTGAAGATGAGCAT 59.223 43.478 0.00 0.00 0.00 3.79
4655 8056 3.173151 TCTAACCAGGTGAAGATGAGCA 58.827 45.455 0.00 0.00 0.00 4.26
4656 8057 3.895232 TCTAACCAGGTGAAGATGAGC 57.105 47.619 0.00 0.00 0.00 4.26
4657 8058 5.997746 TGTTTTCTAACCAGGTGAAGATGAG 59.002 40.000 5.86 0.00 33.15 2.90
4658 8059 5.935945 TGTTTTCTAACCAGGTGAAGATGA 58.064 37.500 5.86 0.00 33.15 2.92
4659 8060 6.633500 TTGTTTTCTAACCAGGTGAAGATG 57.367 37.500 5.86 0.00 33.15 2.90
4660 8061 7.839680 AATTGTTTTCTAACCAGGTGAAGAT 57.160 32.000 5.86 0.00 33.15 2.40
4661 8062 7.123547 ACAAATTGTTTTCTAACCAGGTGAAGA 59.876 33.333 0.00 0.00 33.15 2.87
4662 8063 7.264947 ACAAATTGTTTTCTAACCAGGTGAAG 58.735 34.615 0.00 0.00 33.15 3.02
4663 8064 7.176589 ACAAATTGTTTTCTAACCAGGTGAA 57.823 32.000 0.00 0.00 33.15 3.18
4664 8065 6.783708 ACAAATTGTTTTCTAACCAGGTGA 57.216 33.333 0.00 0.00 33.15 4.02
4665 8066 8.934507 TTTACAAATTGTTTTCTAACCAGGTG 57.065 30.769 3.17 0.00 33.15 4.00
4666 8067 9.945904 TTTTTACAAATTGTTTTCTAACCAGGT 57.054 25.926 3.17 0.00 33.15 4.00
4724 8125 7.758980 ACGCATCAAATTGTCTATGCATAAAAA 59.241 29.630 15.30 3.13 43.86 1.94
4725 8126 7.220491 CACGCATCAAATTGTCTATGCATAAAA 59.780 33.333 15.30 3.48 43.86 1.52
4726 8127 6.692249 CACGCATCAAATTGTCTATGCATAAA 59.308 34.615 15.30 0.00 43.86 1.40
4727 8128 6.038050 TCACGCATCAAATTGTCTATGCATAA 59.962 34.615 15.30 0.00 43.86 1.90
4728 8129 5.526846 TCACGCATCAAATTGTCTATGCATA 59.473 36.000 15.30 6.20 43.86 3.14
4729 8130 4.336153 TCACGCATCAAATTGTCTATGCAT 59.664 37.500 15.30 3.79 43.86 3.96
4730 8131 3.688673 TCACGCATCAAATTGTCTATGCA 59.311 39.130 15.30 0.00 43.86 3.96
4731 8132 4.034394 TCTCACGCATCAAATTGTCTATGC 59.966 41.667 7.74 7.74 41.00 3.14
4732 8133 5.292834 AGTCTCACGCATCAAATTGTCTATG 59.707 40.000 0.00 0.00 0.00 2.23
4733 8134 5.423015 AGTCTCACGCATCAAATTGTCTAT 58.577 37.500 0.00 0.00 0.00 1.98
4734 8135 4.820897 AGTCTCACGCATCAAATTGTCTA 58.179 39.130 0.00 0.00 0.00 2.59
4735 8136 3.668447 AGTCTCACGCATCAAATTGTCT 58.332 40.909 0.00 0.00 0.00 3.41
4736 8137 3.482598 CGAGTCTCACGCATCAAATTGTC 60.483 47.826 0.00 0.00 0.00 3.18
4737 8138 2.413112 CGAGTCTCACGCATCAAATTGT 59.587 45.455 0.00 0.00 0.00 2.71
4738 8139 3.030475 CGAGTCTCACGCATCAAATTG 57.970 47.619 0.00 0.00 0.00 2.32
4748 8149 4.166523 TGAAATTTAGAGCGAGTCTCACG 58.833 43.478 0.00 0.00 44.35 4.35
4749 8150 5.635700 ACTTGAAATTTAGAGCGAGTCTCAC 59.364 40.000 0.00 0.00 44.35 3.51
4750 8151 5.784177 ACTTGAAATTTAGAGCGAGTCTCA 58.216 37.500 0.00 0.00 44.35 3.27
4751 8152 6.713792 AACTTGAAATTTAGAGCGAGTCTC 57.286 37.500 0.00 0.00 42.21 3.36
4752 8153 8.779354 AATAACTTGAAATTTAGAGCGAGTCT 57.221 30.769 0.00 0.00 39.59 3.24
4753 8154 9.267096 CAAATAACTTGAAATTTAGAGCGAGTC 57.733 33.333 0.00 0.00 37.17 3.36
4754 8155 8.237267 CCAAATAACTTGAAATTTAGAGCGAGT 58.763 33.333 0.00 0.00 37.17 4.18
4755 8156 8.450964 TCCAAATAACTTGAAATTTAGAGCGAG 58.549 33.333 0.00 0.00 37.17 5.03
4756 8157 8.234546 GTCCAAATAACTTGAAATTTAGAGCGA 58.765 33.333 0.00 0.00 37.17 4.93
4757 8158 8.020819 TGTCCAAATAACTTGAAATTTAGAGCG 58.979 33.333 0.00 0.00 37.17 5.03
4758 8159 9.860898 ATGTCCAAATAACTTGAAATTTAGAGC 57.139 29.630 0.00 0.00 37.17 4.09
4763 8164 9.918630 CTCAGATGTCCAAATAACTTGAAATTT 57.081 29.630 0.00 0.00 37.17 1.82
4764 8165 8.031277 GCTCAGATGTCCAAATAACTTGAAATT 58.969 33.333 0.00 0.00 37.17 1.82
4765 8166 7.177216 TGCTCAGATGTCCAAATAACTTGAAAT 59.823 33.333 0.00 0.00 37.17 2.17
4766 8167 6.489700 TGCTCAGATGTCCAAATAACTTGAAA 59.510 34.615 0.00 0.00 37.17 2.69
4767 8168 6.003326 TGCTCAGATGTCCAAATAACTTGAA 58.997 36.000 0.00 0.00 37.17 2.69
4768 8169 5.559770 TGCTCAGATGTCCAAATAACTTGA 58.440 37.500 0.00 0.00 37.17 3.02
4769 8170 5.675575 GCTGCTCAGATGTCCAAATAACTTG 60.676 44.000 0.29 0.00 34.52 3.16
4770 8171 4.397417 GCTGCTCAGATGTCCAAATAACTT 59.603 41.667 0.29 0.00 0.00 2.66
4771 8172 3.944015 GCTGCTCAGATGTCCAAATAACT 59.056 43.478 0.29 0.00 0.00 2.24
4772 8173 3.944015 AGCTGCTCAGATGTCCAAATAAC 59.056 43.478 0.00 0.00 0.00 1.89
4773 8174 4.226427 AGCTGCTCAGATGTCCAAATAA 57.774 40.909 0.00 0.00 0.00 1.40
4774 8175 3.920231 AGCTGCTCAGATGTCCAAATA 57.080 42.857 0.00 0.00 0.00 1.40
4775 8176 2.803030 AGCTGCTCAGATGTCCAAAT 57.197 45.000 0.00 0.00 0.00 2.32
4776 8177 2.574006 AAGCTGCTCAGATGTCCAAA 57.426 45.000 1.00 0.00 0.00 3.28
4777 8178 2.224597 TGAAAGCTGCTCAGATGTCCAA 60.225 45.455 1.00 0.00 30.21 3.53
4778 8179 1.348696 TGAAAGCTGCTCAGATGTCCA 59.651 47.619 1.00 0.00 30.21 4.02
4779 8180 2.105006 TGAAAGCTGCTCAGATGTCC 57.895 50.000 1.00 0.00 30.21 4.02
4780 8181 2.810274 TGTTGAAAGCTGCTCAGATGTC 59.190 45.455 1.00 0.00 31.90 3.06
4781 8182 2.854963 TGTTGAAAGCTGCTCAGATGT 58.145 42.857 1.00 0.00 0.00 3.06
4782 8183 3.909776 TTGTTGAAAGCTGCTCAGATG 57.090 42.857 1.00 0.00 0.00 2.90
4783 8184 4.139786 TCTTTGTTGAAAGCTGCTCAGAT 58.860 39.130 1.00 0.00 38.83 2.90
4784 8185 3.544684 TCTTTGTTGAAAGCTGCTCAGA 58.455 40.909 1.00 0.00 38.83 3.27
4785 8186 3.976793 TCTTTGTTGAAAGCTGCTCAG 57.023 42.857 1.00 0.00 38.83 3.35
4786 8187 3.947196 TCTTCTTTGTTGAAAGCTGCTCA 59.053 39.130 1.00 0.00 38.83 4.26
4787 8188 4.201950 TGTCTTCTTTGTTGAAAGCTGCTC 60.202 41.667 1.00 0.00 38.83 4.26
4788 8189 3.696051 TGTCTTCTTTGTTGAAAGCTGCT 59.304 39.130 0.00 0.00 38.83 4.24
4789 8190 4.032703 TGTCTTCTTTGTTGAAAGCTGC 57.967 40.909 0.00 0.00 38.83 5.25
4790 8191 7.396419 CAATTTGTCTTCTTTGTTGAAAGCTG 58.604 34.615 0.00 0.00 38.83 4.24
4791 8192 6.536224 CCAATTTGTCTTCTTTGTTGAAAGCT 59.464 34.615 0.00 0.00 38.83 3.74
4792 8193 6.238184 CCCAATTTGTCTTCTTTGTTGAAAGC 60.238 38.462 0.00 0.00 38.83 3.51
4793 8194 6.238184 GCCCAATTTGTCTTCTTTGTTGAAAG 60.238 38.462 0.00 0.00 40.13 2.62
4794 8195 5.584251 GCCCAATTTGTCTTCTTTGTTGAAA 59.416 36.000 0.00 0.00 0.00 2.69
4795 8196 5.115480 GCCCAATTTGTCTTCTTTGTTGAA 58.885 37.500 0.00 0.00 0.00 2.69
4796 8197 4.442753 GGCCCAATTTGTCTTCTTTGTTGA 60.443 41.667 0.00 0.00 0.00 3.18
4797 8198 3.809279 GGCCCAATTTGTCTTCTTTGTTG 59.191 43.478 0.00 0.00 0.00 3.33
4798 8199 3.454082 TGGCCCAATTTGTCTTCTTTGTT 59.546 39.130 0.00 0.00 0.00 2.83
4799 8200 3.037549 TGGCCCAATTTGTCTTCTTTGT 58.962 40.909 0.00 0.00 0.00 2.83
4800 8201 3.749665 TGGCCCAATTTGTCTTCTTTG 57.250 42.857 0.00 0.00 0.00 2.77
4801 8202 4.769345 TTTGGCCCAATTTGTCTTCTTT 57.231 36.364 0.00 0.00 0.00 2.52
4802 8203 4.080638 TGTTTTGGCCCAATTTGTCTTCTT 60.081 37.500 0.00 0.00 0.00 2.52
4803 8204 3.454082 TGTTTTGGCCCAATTTGTCTTCT 59.546 39.130 0.00 0.00 0.00 2.85
4804 8205 3.802866 TGTTTTGGCCCAATTTGTCTTC 58.197 40.909 0.00 0.00 0.00 2.87
4805 8206 3.199727 ACTGTTTTGGCCCAATTTGTCTT 59.800 39.130 0.00 0.00 0.00 3.01
4806 8207 2.771372 ACTGTTTTGGCCCAATTTGTCT 59.229 40.909 0.00 0.00 0.00 3.41
4807 8208 3.192541 ACTGTTTTGGCCCAATTTGTC 57.807 42.857 0.00 0.00 0.00 3.18
4808 8209 4.762289 TTACTGTTTTGGCCCAATTTGT 57.238 36.364 0.00 0.00 0.00 2.83
4809 8210 4.878397 TGTTTACTGTTTTGGCCCAATTTG 59.122 37.500 0.00 0.00 0.00 2.32
4810 8211 5.104259 TGTTTACTGTTTTGGCCCAATTT 57.896 34.783 0.00 0.00 0.00 1.82
4811 8212 4.762289 TGTTTACTGTTTTGGCCCAATT 57.238 36.364 0.00 0.00 0.00 2.32
4812 8213 4.972751 ATGTTTACTGTTTTGGCCCAAT 57.027 36.364 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.