Multiple sequence alignment - TraesCS5D01G097500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G097500 chr5D 100.000 3245 0 0 1 3245 108118879 108122123 0.000000e+00 5993.0
1 TraesCS5D01G097500 chr5D 95.556 450 20 0 1 450 282735240 282735689 0.000000e+00 721.0
2 TraesCS5D01G097500 chr5D 95.175 456 22 0 1 456 450264835 450264380 0.000000e+00 721.0
3 TraesCS5D01G097500 chr5D 95.364 453 20 1 1 453 450255517 450255066 0.000000e+00 719.0
4 TraesCS5D01G097500 chr5D 95.344 451 20 1 1 450 282730959 282731409 0.000000e+00 715.0
5 TraesCS5D01G097500 chr5D 94.792 192 9 1 660 851 67584588 67584778 6.810000e-77 298.0
6 TraesCS5D01G097500 chr5D 87.912 91 8 1 1811 1901 299073496 299073409 1.590000e-18 104.0
7 TraesCS5D01G097500 chr5B 95.704 1350 51 5 1899 3245 118525902 118527247 0.000000e+00 2165.0
8 TraesCS5D01G097500 chr5B 89.218 946 67 17 838 1757 118524830 118525766 0.000000e+00 1149.0
9 TraesCS5D01G097500 chr5B 90.777 206 12 4 457 661 118524661 118524860 5.340000e-68 268.0
10 TraesCS5D01G097500 chr5B 81.818 165 29 1 1912 2076 185516035 185515872 1.570000e-28 137.0
11 TraesCS5D01G097500 chr5A 95.104 1348 48 7 1899 3245 111620687 111622017 0.000000e+00 2108.0
12 TraesCS5D01G097500 chr5A 89.817 982 59 16 838 1786 111619731 111620704 0.000000e+00 1221.0
13 TraesCS5D01G097500 chr5A 90.187 214 13 4 450 661 111619554 111619761 4.130000e-69 272.0
14 TraesCS5D01G097500 chr1D 95.197 458 19 3 1 457 441712927 441712472 0.000000e+00 721.0
15 TraesCS5D01G097500 chr7D 95.546 449 20 0 1 449 372229056 372229504 0.000000e+00 719.0
16 TraesCS5D01G097500 chr7D 88.043 92 8 1 1811 1902 446214941 446215029 4.430000e-19 106.0
17 TraesCS5D01G097500 chr3D 95.556 450 18 2 1 450 388414881 388414434 0.000000e+00 719.0
18 TraesCS5D01G097500 chr3D 93.846 195 10 2 660 853 305862666 305862859 3.170000e-75 292.0
19 TraesCS5D01G097500 chr3D 90.610 213 17 3 663 873 274516040 274515829 2.470000e-71 279.0
20 TraesCS5D01G097500 chr3D 88.235 85 7 1 1817 1901 533920869 533920788 7.410000e-17 99.0
21 TraesCS5D01G097500 chr2D 95.546 449 20 0 1 449 380453214 380453662 0.000000e+00 719.0
22 TraesCS5D01G097500 chr2D 87.912 91 8 1 1811 1901 449516302 449516215 1.590000e-18 104.0
23 TraesCS5D01G097500 chr4D 94.043 470 20 7 1 464 406393579 406394046 0.000000e+00 706.0
24 TraesCS5D01G097500 chr4D 87.912 91 8 1 1811 1901 220358570 220358657 1.590000e-18 104.0
25 TraesCS5D01G097500 chr3A 92.056 214 13 4 660 871 375018085 375018296 6.810000e-77 298.0
26 TraesCS5D01G097500 chr3A 94.211 190 10 1 663 852 308688712 308688524 4.100000e-74 289.0
27 TraesCS5D01G097500 chr3A 92.500 200 12 3 659 856 685778318 685778516 1.910000e-72 283.0
28 TraesCS5D01G097500 chr3A 91.860 86 4 1 1811 1896 460814636 460814554 2.050000e-22 117.0
29 TraesCS5D01G097500 chr1B 92.965 199 11 3 660 856 605915022 605914825 1.470000e-73 287.0
30 TraesCS5D01G097500 chr1B 92.500 200 12 3 659 856 327247955 327247757 1.910000e-72 283.0
31 TraesCS5D01G097500 chrUn 84.068 295 44 3 1961 2252 18799567 18799273 6.850000e-72 281.0
32 TraesCS5D01G097500 chr2A 89.732 224 16 6 660 880 260847485 260847704 2.470000e-71 279.0
33 TraesCS5D01G097500 chr2A 89.130 92 7 1 1811 1902 317953250 317953162 9.520000e-21 111.0
34 TraesCS5D01G097500 chr6B 81.759 307 53 3 1949 2252 93992185 93992491 1.490000e-63 254.0
35 TraesCS5D01G097500 chr3B 88.372 86 7 1 1811 1896 440886227 440886309 2.060000e-17 100.0
36 TraesCS5D01G097500 chr4B 86.047 86 9 1 1817 1902 602299437 602299355 4.460000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G097500 chr5D 108118879 108122123 3244 False 5993.000000 5993 100.000000 1 3245 1 chr5D.!!$F2 3244
1 TraesCS5D01G097500 chr5D 282730959 282735689 4730 False 718.000000 721 95.450000 1 450 2 chr5D.!!$F3 449
2 TraesCS5D01G097500 chr5B 118524661 118527247 2586 False 1194.000000 2165 91.899667 457 3245 3 chr5B.!!$F1 2788
3 TraesCS5D01G097500 chr5A 111619554 111622017 2463 False 1200.333333 2108 91.702667 450 3245 3 chr5A.!!$F1 2795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 1209 0.104487 GGGTTTCGCCTCTAGCCTAC 59.896 60.0 0.0 0.0 38.78 3.18 F
791 1210 0.104487 GGTTTCGCCTCTAGCCTACC 59.896 60.0 0.0 0.0 38.78 3.18 F
792 1211 0.104487 GTTTCGCCTCTAGCCTACCC 59.896 60.0 0.0 0.0 38.78 3.69 F
1820 2821 0.108520 CGCAGCGGTAAAAGTAGGGA 60.109 55.0 7.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2802 0.108520 TCCCTACTTTTACCGCTGCG 60.109 55.0 16.34 16.34 0.00 5.18 R
1841 2842 0.114364 AGAAGGGTCCGGCCATTTTT 59.886 50.0 14.47 5.66 41.95 1.94 R
1842 2843 0.611896 CAGAAGGGTCCGGCCATTTT 60.612 55.0 14.47 7.68 41.95 1.82 R
2694 3697 0.984230 GACAATCCAGTGAGACCCCA 59.016 55.0 0.00 0.00 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 124 1.441732 AACGAAACTTGACCGGTGGC 61.442 55.000 14.63 0.00 0.00 5.01
125 127 1.228154 AAACTTGACCGGTGGCCTC 60.228 57.895 14.63 0.00 0.00 4.70
191 193 1.812571 GAATGTTTGACACCCGCTCAT 59.187 47.619 0.00 0.00 0.00 2.90
200 202 2.552315 GACACCCGCTCATGAAAGAAAA 59.448 45.455 0.00 0.00 0.00 2.29
213 215 1.318576 AAGAAAACAAGAGGGGTGCG 58.681 50.000 0.00 0.00 0.00 5.34
296 298 3.322369 AGACGAACACGTATGCAAATGA 58.678 40.909 0.00 0.00 40.41 2.57
359 361 6.533185 ACAAAATGCAAAACGAAAGACAAAG 58.467 32.000 0.00 0.00 0.00 2.77
420 422 4.098914 TGGCAAGAGTTGGAGTTACAAT 57.901 40.909 0.00 0.00 32.24 2.71
450 452 3.264964 AGTTACATCCGGGGTGTTACAAT 59.735 43.478 26.16 8.56 33.02 2.71
485 487 2.819608 GGAAGCTGGTACTTTCATGCAA 59.180 45.455 0.00 0.00 0.00 4.08
495 497 7.112122 TGGTACTTTCATGCAATCTCTTACAT 58.888 34.615 0.00 0.00 0.00 2.29
496 498 7.066163 TGGTACTTTCATGCAATCTCTTACATG 59.934 37.037 0.00 0.00 37.44 3.21
497 499 7.280876 GGTACTTTCATGCAATCTCTTACATGA 59.719 37.037 0.00 0.00 41.35 3.07
503 505 6.376299 TCATGCAATCTCTTACATGAAGCTTT 59.624 34.615 0.00 0.00 40.55 3.51
612 1031 3.705604 GCTTTTGCGTGCATATTGGTAT 58.294 40.909 0.00 0.00 34.86 2.73
613 1032 4.111916 GCTTTTGCGTGCATATTGGTATT 58.888 39.130 0.00 0.00 34.86 1.89
657 1076 8.487313 TTTTGTGGTAGTATGTTATACTGCTG 57.513 34.615 13.96 0.00 32.04 4.41
658 1077 6.785337 TGTGGTAGTATGTTATACTGCTGT 57.215 37.500 13.96 0.66 32.04 4.40
659 1078 6.569780 TGTGGTAGTATGTTATACTGCTGTG 58.430 40.000 6.48 0.00 32.04 3.66
660 1079 6.153851 TGTGGTAGTATGTTATACTGCTGTGT 59.846 38.462 6.48 2.01 32.04 3.72
661 1080 7.339976 TGTGGTAGTATGTTATACTGCTGTGTA 59.660 37.037 6.48 0.91 32.04 2.90
662 1081 8.192774 GTGGTAGTATGTTATACTGCTGTGTAA 58.807 37.037 6.48 7.64 32.04 2.41
663 1082 8.751242 TGGTAGTATGTTATACTGCTGTGTAAA 58.249 33.333 13.18 6.20 32.87 2.01
664 1083 9.245962 GGTAGTATGTTATACTGCTGTGTAAAG 57.754 37.037 13.18 0.00 32.87 1.85
667 1086 8.967918 AGTATGTTATACTGCTGTGTAAAGAGA 58.032 33.333 13.18 0.73 32.87 3.10
668 1087 9.239002 GTATGTTATACTGCTGTGTAAAGAGAG 57.761 37.037 13.18 0.00 32.87 3.20
669 1088 7.462571 TGTTATACTGCTGTGTAAAGAGAGA 57.537 36.000 13.18 0.00 32.87 3.10
670 1089 8.067751 TGTTATACTGCTGTGTAAAGAGAGAT 57.932 34.615 13.18 0.00 32.87 2.75
671 1090 8.191446 TGTTATACTGCTGTGTAAAGAGAGATC 58.809 37.037 13.18 1.82 32.87 2.75
672 1091 8.410141 GTTATACTGCTGTGTAAAGAGAGATCT 58.590 37.037 13.18 0.00 32.87 2.75
673 1092 5.070770 ACTGCTGTGTAAAGAGAGATCTG 57.929 43.478 0.00 0.00 0.00 2.90
674 1093 4.769488 ACTGCTGTGTAAAGAGAGATCTGA 59.231 41.667 0.00 0.00 0.00 3.27
675 1094 5.244851 ACTGCTGTGTAAAGAGAGATCTGAA 59.755 40.000 0.00 0.00 0.00 3.02
676 1095 5.718146 TGCTGTGTAAAGAGAGATCTGAAG 58.282 41.667 0.00 0.00 0.00 3.02
677 1096 5.108517 GCTGTGTAAAGAGAGATCTGAAGG 58.891 45.833 0.00 0.00 0.00 3.46
678 1097 5.105554 GCTGTGTAAAGAGAGATCTGAAGGA 60.106 44.000 0.00 0.00 0.00 3.36
679 1098 6.406849 GCTGTGTAAAGAGAGATCTGAAGGAT 60.407 42.308 0.00 0.00 37.37 3.24
680 1099 7.487822 TGTGTAAAGAGAGATCTGAAGGATT 57.512 36.000 0.00 0.00 34.33 3.01
681 1100 7.326454 TGTGTAAAGAGAGATCTGAAGGATTG 58.674 38.462 0.00 0.00 34.33 2.67
682 1101 6.760770 GTGTAAAGAGAGATCTGAAGGATTGG 59.239 42.308 0.00 0.00 34.33 3.16
683 1102 6.669591 TGTAAAGAGAGATCTGAAGGATTGGA 59.330 38.462 0.00 0.00 34.33 3.53
684 1103 6.633325 AAAGAGAGATCTGAAGGATTGGAA 57.367 37.500 0.00 0.00 34.33 3.53
685 1104 6.828307 AAGAGAGATCTGAAGGATTGGAAT 57.172 37.500 0.00 0.00 34.33 3.01
686 1105 7.927683 AAGAGAGATCTGAAGGATTGGAATA 57.072 36.000 0.00 0.00 34.33 1.75
687 1106 8.508969 AAGAGAGATCTGAAGGATTGGAATAT 57.491 34.615 0.00 0.00 34.33 1.28
688 1107 8.137745 AGAGAGATCTGAAGGATTGGAATATC 57.862 38.462 0.00 0.00 34.33 1.63
689 1108 7.733955 AGAGAGATCTGAAGGATTGGAATATCA 59.266 37.037 0.00 0.00 34.33 2.15
690 1109 7.678837 AGAGATCTGAAGGATTGGAATATCAC 58.321 38.462 0.00 0.00 34.33 3.06
691 1110 6.777782 AGATCTGAAGGATTGGAATATCACC 58.222 40.000 0.00 0.00 34.33 4.02
692 1111 5.974156 TCTGAAGGATTGGAATATCACCA 57.026 39.130 0.00 0.00 35.47 4.17
703 1122 5.437060 TGGAATATCACCAAAGAACTAGCC 58.563 41.667 0.00 0.00 34.25 3.93
704 1123 5.045213 TGGAATATCACCAAAGAACTAGCCA 60.045 40.000 0.00 0.00 34.25 4.75
705 1124 6.064717 GGAATATCACCAAAGAACTAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
706 1125 6.016777 GGAATATCACCAAAGAACTAGCCATG 60.017 42.308 0.00 0.00 0.00 3.66
707 1126 3.071874 TCACCAAAGAACTAGCCATGG 57.928 47.619 7.63 7.63 0.00 3.66
708 1127 2.642311 TCACCAAAGAACTAGCCATGGA 59.358 45.455 18.40 0.00 0.00 3.41
709 1128 2.749621 CACCAAAGAACTAGCCATGGAC 59.250 50.000 18.40 7.03 0.00 4.02
710 1129 2.375174 ACCAAAGAACTAGCCATGGACA 59.625 45.455 18.40 0.00 0.00 4.02
711 1130 3.012518 CCAAAGAACTAGCCATGGACAG 58.987 50.000 18.40 13.68 0.00 3.51
712 1131 3.012518 CAAAGAACTAGCCATGGACAGG 58.987 50.000 18.40 4.37 0.00 4.00
713 1132 1.207791 AGAACTAGCCATGGACAGGG 58.792 55.000 18.40 0.00 34.91 4.45
714 1133 0.181350 GAACTAGCCATGGACAGGGG 59.819 60.000 18.40 0.95 31.86 4.79
715 1134 0.550147 AACTAGCCATGGACAGGGGT 60.550 55.000 18.40 12.50 45.59 4.95
716 1135 1.274703 ACTAGCCATGGACAGGGGTG 61.275 60.000 18.40 9.72 43.36 4.61
717 1136 2.615227 CTAGCCATGGACAGGGGTGC 62.615 65.000 18.40 0.00 43.36 5.01
719 1138 4.033776 CCATGGACAGGGGTGCGT 62.034 66.667 5.56 0.00 38.35 5.24
720 1139 2.747460 CATGGACAGGGGTGCGTG 60.747 66.667 0.00 0.00 44.29 5.34
721 1140 4.033776 ATGGACAGGGGTGCGTGG 62.034 66.667 0.00 0.00 38.35 4.94
723 1142 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
724 1143 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
725 1144 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
726 1145 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
727 1146 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
728 1147 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
729 1148 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
730 1149 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
731 1150 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
732 1151 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
733 1152 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
734 1153 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
735 1154 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
736 1155 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
737 1156 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
738 1157 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
739 1158 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
740 1159 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
741 1160 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
742 1161 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
743 1162 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
744 1163 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
745 1164 2.646930 CTTGCTATCCATGTGCCAGAA 58.353 47.619 0.00 0.00 0.00 3.02
746 1165 2.042686 TGCTATCCATGTGCCAGAAC 57.957 50.000 0.00 0.00 0.00 3.01
747 1166 1.312815 GCTATCCATGTGCCAGAACC 58.687 55.000 0.00 0.00 0.00 3.62
748 1167 1.408683 GCTATCCATGTGCCAGAACCA 60.409 52.381 0.00 0.00 0.00 3.67
749 1168 2.750807 GCTATCCATGTGCCAGAACCAT 60.751 50.000 0.00 0.00 0.00 3.55
750 1169 1.771565 ATCCATGTGCCAGAACCATG 58.228 50.000 0.00 0.00 36.56 3.66
751 1170 0.697658 TCCATGTGCCAGAACCATGA 59.302 50.000 0.00 0.00 38.56 3.07
752 1171 1.100510 CCATGTGCCAGAACCATGAG 58.899 55.000 0.00 0.00 38.56 2.90
753 1172 1.615116 CCATGTGCCAGAACCATGAGT 60.615 52.381 0.00 0.00 38.56 3.41
754 1173 2.165167 CATGTGCCAGAACCATGAGTT 58.835 47.619 0.00 0.00 43.07 3.01
755 1174 1.608055 TGTGCCAGAACCATGAGTTG 58.392 50.000 0.00 0.00 39.40 3.16
763 1182 3.895025 CCATGAGTTGGCCACGAG 58.105 61.111 3.88 0.00 39.09 4.18
764 1183 1.296392 CCATGAGTTGGCCACGAGA 59.704 57.895 3.88 0.00 39.09 4.04
765 1184 0.107508 CCATGAGTTGGCCACGAGAT 60.108 55.000 3.88 0.00 39.09 2.75
766 1185 1.293924 CATGAGTTGGCCACGAGATC 58.706 55.000 3.88 0.00 0.00 2.75
767 1186 1.134580 CATGAGTTGGCCACGAGATCT 60.135 52.381 3.88 0.00 0.00 2.75
768 1187 0.976641 TGAGTTGGCCACGAGATCTT 59.023 50.000 3.88 0.00 0.00 2.40
769 1188 2.176045 TGAGTTGGCCACGAGATCTTA 58.824 47.619 3.88 0.00 0.00 2.10
770 1189 2.766263 TGAGTTGGCCACGAGATCTTAT 59.234 45.455 3.88 0.00 0.00 1.73
771 1190 3.126831 GAGTTGGCCACGAGATCTTATG 58.873 50.000 3.88 0.00 0.00 1.90
772 1191 2.158900 AGTTGGCCACGAGATCTTATGG 60.159 50.000 3.88 17.85 35.17 2.74
773 1192 0.758734 TGGCCACGAGATCTTATGGG 59.241 55.000 21.60 11.96 32.49 4.00
774 1193 0.759346 GGCCACGAGATCTTATGGGT 59.241 55.000 21.60 4.10 32.49 4.51
775 1194 1.141053 GGCCACGAGATCTTATGGGTT 59.859 52.381 21.60 0.00 32.49 4.11
776 1195 2.421529 GGCCACGAGATCTTATGGGTTT 60.422 50.000 21.60 0.00 32.49 3.27
777 1196 2.872858 GCCACGAGATCTTATGGGTTTC 59.127 50.000 21.60 6.93 32.49 2.78
778 1197 3.123804 CCACGAGATCTTATGGGTTTCG 58.876 50.000 15.40 6.09 0.00 3.46
779 1198 2.540101 CACGAGATCTTATGGGTTTCGC 59.460 50.000 0.00 0.00 0.00 4.70
780 1199 2.135933 CGAGATCTTATGGGTTTCGCC 58.864 52.381 0.00 0.00 0.00 5.54
781 1200 2.224066 CGAGATCTTATGGGTTTCGCCT 60.224 50.000 0.00 0.00 37.43 5.52
782 1201 3.394719 GAGATCTTATGGGTTTCGCCTC 58.605 50.000 0.00 0.00 37.43 4.70
783 1202 3.041946 AGATCTTATGGGTTTCGCCTCT 58.958 45.455 0.00 0.00 37.43 3.69
784 1203 4.223953 AGATCTTATGGGTTTCGCCTCTA 58.776 43.478 0.00 0.00 37.43 2.43
785 1204 4.282195 AGATCTTATGGGTTTCGCCTCTAG 59.718 45.833 0.00 0.00 37.43 2.43
786 1205 2.102588 TCTTATGGGTTTCGCCTCTAGC 59.897 50.000 0.00 0.00 37.43 3.42
787 1206 0.756903 TATGGGTTTCGCCTCTAGCC 59.243 55.000 0.00 0.00 38.78 3.93
788 1207 0.983378 ATGGGTTTCGCCTCTAGCCT 60.983 55.000 0.00 0.00 38.78 4.58
789 1208 0.324923 TGGGTTTCGCCTCTAGCCTA 60.325 55.000 0.00 0.00 38.78 3.93
790 1209 0.104487 GGGTTTCGCCTCTAGCCTAC 59.896 60.000 0.00 0.00 38.78 3.18
791 1210 0.104487 GGTTTCGCCTCTAGCCTACC 59.896 60.000 0.00 0.00 38.78 3.18
792 1211 0.104487 GTTTCGCCTCTAGCCTACCC 59.896 60.000 0.00 0.00 38.78 3.69
793 1212 1.047034 TTTCGCCTCTAGCCTACCCC 61.047 60.000 0.00 0.00 38.78 4.95
794 1213 2.123425 CGCCTCTAGCCTACCCCA 60.123 66.667 0.00 0.00 38.78 4.96
795 1214 1.760875 CGCCTCTAGCCTACCCCAA 60.761 63.158 0.00 0.00 38.78 4.12
796 1215 1.830836 GCCTCTAGCCTACCCCAAC 59.169 63.158 0.00 0.00 34.35 3.77
797 1216 0.691413 GCCTCTAGCCTACCCCAACT 60.691 60.000 0.00 0.00 34.35 3.16
798 1217 1.880941 CCTCTAGCCTACCCCAACTT 58.119 55.000 0.00 0.00 0.00 2.66
799 1218 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
800 1219 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
801 1220 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
802 1221 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
803 1222 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
814 1233 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
815 1234 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
816 1235 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
817 1236 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
818 1237 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
819 1238 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
820 1239 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
821 1240 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
822 1241 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
823 1242 4.440826 TGGGACTAAAGGCTTTGTTGTA 57.559 40.909 22.32 0.81 0.00 2.41
824 1243 4.394729 TGGGACTAAAGGCTTTGTTGTAG 58.605 43.478 22.32 13.23 0.00 2.74
825 1244 4.141344 TGGGACTAAAGGCTTTGTTGTAGT 60.141 41.667 22.32 16.31 0.00 2.73
826 1245 4.825634 GGGACTAAAGGCTTTGTTGTAGTT 59.174 41.667 22.32 2.76 0.00 2.24
827 1246 5.278315 GGGACTAAAGGCTTTGTTGTAGTTG 60.278 44.000 22.32 0.00 0.00 3.16
828 1247 5.298527 GGACTAAAGGCTTTGTTGTAGTTGT 59.701 40.000 22.32 0.47 0.00 3.32
829 1248 6.183360 GGACTAAAGGCTTTGTTGTAGTTGTT 60.183 38.462 22.32 0.00 0.00 2.83
830 1249 6.560711 ACTAAAGGCTTTGTTGTAGTTGTTG 58.439 36.000 22.32 0.00 0.00 3.33
831 1250 4.385358 AAGGCTTTGTTGTAGTTGTTGG 57.615 40.909 0.00 0.00 0.00 3.77
832 1251 3.361786 AGGCTTTGTTGTAGTTGTTGGT 58.638 40.909 0.00 0.00 0.00 3.67
833 1252 3.130340 AGGCTTTGTTGTAGTTGTTGGTG 59.870 43.478 0.00 0.00 0.00 4.17
834 1253 3.119280 GGCTTTGTTGTAGTTGTTGGTGT 60.119 43.478 0.00 0.00 0.00 4.16
835 1254 4.490743 GCTTTGTTGTAGTTGTTGGTGTT 58.509 39.130 0.00 0.00 0.00 3.32
836 1255 4.326009 GCTTTGTTGTAGTTGTTGGTGTTG 59.674 41.667 0.00 0.00 0.00 3.33
837 1256 5.455056 TTTGTTGTAGTTGTTGGTGTTGT 57.545 34.783 0.00 0.00 0.00 3.32
838 1257 5.455056 TTGTTGTAGTTGTTGGTGTTGTT 57.545 34.783 0.00 0.00 0.00 2.83
839 1258 5.455056 TGTTGTAGTTGTTGGTGTTGTTT 57.545 34.783 0.00 0.00 0.00 2.83
840 1259 5.844004 TGTTGTAGTTGTTGGTGTTGTTTT 58.156 33.333 0.00 0.00 0.00 2.43
841 1260 6.281405 TGTTGTAGTTGTTGGTGTTGTTTTT 58.719 32.000 0.00 0.00 0.00 1.94
879 1298 2.020720 CTGGTGTGTGTGCCTTAAACA 58.979 47.619 0.00 0.00 0.00 2.83
906 1326 9.658799 TTTTTGTAATGAAAAACAATGTCTGGA 57.341 25.926 0.00 0.00 35.64 3.86
926 1346 6.024552 TGGATTGTTGTTCCTTAATTGCTC 57.975 37.500 0.00 0.00 34.17 4.26
969 1400 6.549912 ACATGTTTAAGTAACCGACTTTCC 57.450 37.500 0.00 0.00 46.79 3.13
970 1401 6.293698 ACATGTTTAAGTAACCGACTTTCCT 58.706 36.000 0.00 0.00 46.79 3.36
981 1566 3.181454 ACCGACTTTCCTGTTGATTGACT 60.181 43.478 0.00 0.00 0.00 3.41
1060 1897 3.365220 CGATAATGCGCTTAGAGTAAGGC 59.635 47.826 9.73 0.00 36.31 4.35
1105 1942 3.012274 ACAAATTACCCCCATCATGACCA 59.988 43.478 0.00 0.00 0.00 4.02
1159 1996 9.387123 GTTCTGAAATTTCATTTCTGTAGTCAC 57.613 33.333 20.76 5.56 46.71 3.67
1162 1999 7.362662 TGAAATTTCATTTCTGTAGTCACAGC 58.637 34.615 16.91 0.00 46.71 4.40
1176 2013 1.065926 TCACAGCAGCCCTATCAGTTG 60.066 52.381 0.00 0.00 0.00 3.16
1177 2014 0.254178 ACAGCAGCCCTATCAGTTGG 59.746 55.000 0.00 0.00 0.00 3.77
1178 2015 0.254178 CAGCAGCCCTATCAGTTGGT 59.746 55.000 0.00 0.00 0.00 3.67
1223 2061 8.621532 TTTTGCAAATCATGTCTAGTACTCTT 57.378 30.769 13.65 0.00 0.00 2.85
1234 2072 3.695060 TCTAGTACTCTTGTGCACCTAGC 59.305 47.826 15.69 0.00 45.96 3.42
1248 2086 4.141551 TGCACCTAGCTCTTCATCATCATT 60.142 41.667 0.00 0.00 45.94 2.57
1250 2088 5.638657 GCACCTAGCTCTTCATCATCATTAG 59.361 44.000 0.00 0.00 41.15 1.73
1257 2095 8.550710 AGCTCTTCATCATCATTAGAATTAGC 57.449 34.615 0.00 0.00 33.03 3.09
1346 2184 9.095065 CTTTTTCTTATGCTGTAGTTATACCGT 57.905 33.333 0.00 0.00 0.00 4.83
1400 2238 5.169295 AGTCAGGTAAGCATACTTTCGTTC 58.831 41.667 0.00 0.00 37.33 3.95
1401 2239 4.329256 GTCAGGTAAGCATACTTTCGTTCC 59.671 45.833 0.00 0.00 37.33 3.62
1409 2247 4.804139 AGCATACTTTCGTTCCAACTATCG 59.196 41.667 0.00 0.00 0.00 2.92
1455 2296 0.533755 ACACACACTCAGCTTGCTCC 60.534 55.000 0.00 0.00 0.00 4.70
1479 2320 6.351117 CCGTTCTCCTCAAGTATCTTTAACCT 60.351 42.308 0.00 0.00 0.00 3.50
1609 2455 5.813513 AAAAACTGCTCCAAGGAATCAAT 57.186 34.783 0.00 0.00 0.00 2.57
1615 2461 4.012374 TGCTCCAAGGAATCAATGTTCTC 58.988 43.478 0.00 0.00 0.00 2.87
1617 2463 5.045651 TGCTCCAAGGAATCAATGTTCTCTA 60.046 40.000 0.00 0.00 0.00 2.43
1645 2496 6.488006 AGCATAACATGTAAGAGGGCTTATTG 59.512 38.462 0.00 0.00 38.74 1.90
1655 2506 2.825532 GAGGGCTTATTGTTTTCAGGCA 59.174 45.455 0.00 0.00 0.00 4.75
1672 2540 1.131693 GGCACTTTATACGTTGCACCC 59.868 52.381 9.63 0.00 0.00 4.61
1673 2541 2.081462 GCACTTTATACGTTGCACCCT 58.919 47.619 0.00 0.00 0.00 4.34
1695 2563 7.173047 ACCCTGAATATGCAAATTGTGTTTTTC 59.827 33.333 0.00 0.00 0.00 2.29
1757 2633 7.961326 AAAGGCCATCACAAATTAGAACTAT 57.039 32.000 5.01 0.00 0.00 2.12
1759 2635 7.961326 AGGCCATCACAAATTAGAACTATTT 57.039 32.000 5.01 0.00 0.00 1.40
1773 2774 8.625786 TTAGAACTATTTTGTCCTGTTTACCC 57.374 34.615 0.00 0.00 0.00 3.69
1780 2781 4.447138 TTGTCCTGTTTACCCTTGATGT 57.553 40.909 0.00 0.00 0.00 3.06
1781 2782 4.447138 TGTCCTGTTTACCCTTGATGTT 57.553 40.909 0.00 0.00 0.00 2.71
1782 2783 5.570205 TGTCCTGTTTACCCTTGATGTTA 57.430 39.130 0.00 0.00 0.00 2.41
1783 2784 6.134535 TGTCCTGTTTACCCTTGATGTTAT 57.865 37.500 0.00 0.00 0.00 1.89
1784 2785 5.943416 TGTCCTGTTTACCCTTGATGTTATG 59.057 40.000 0.00 0.00 0.00 1.90
1785 2786 5.357032 GTCCTGTTTACCCTTGATGTTATGG 59.643 44.000 0.00 0.00 0.00 2.74
1786 2787 4.644685 CCTGTTTACCCTTGATGTTATGGG 59.355 45.833 0.00 0.00 44.89 4.00
1791 2792 3.508845 CCCTTGATGTTATGGGTAGGG 57.491 52.381 0.00 0.00 35.31 3.53
1792 2793 2.108250 CCCTTGATGTTATGGGTAGGGG 59.892 54.545 0.00 0.00 37.72 4.79
1793 2794 3.053077 CCTTGATGTTATGGGTAGGGGA 58.947 50.000 0.00 0.00 0.00 4.81
1794 2795 3.073062 CCTTGATGTTATGGGTAGGGGAG 59.927 52.174 0.00 0.00 0.00 4.30
1795 2796 2.054799 TGATGTTATGGGTAGGGGAGC 58.945 52.381 0.00 0.00 0.00 4.70
1796 2797 1.351350 GATGTTATGGGTAGGGGAGCC 59.649 57.143 0.00 0.00 46.83 4.70
1797 2798 0.345502 TGTTATGGGTAGGGGAGCCT 59.654 55.000 0.00 0.00 46.76 4.58
1798 2799 1.274767 TGTTATGGGTAGGGGAGCCTT 60.275 52.381 0.00 0.00 46.76 4.35
1799 2800 1.143073 GTTATGGGTAGGGGAGCCTTG 59.857 57.143 0.00 0.00 46.76 3.61
1800 2801 0.401395 TATGGGTAGGGGAGCCTTGG 60.401 60.000 0.00 0.00 46.76 3.61
1801 2802 3.810188 GGGTAGGGGAGCCTTGGC 61.810 72.222 2.97 2.97 42.96 4.52
1802 2803 4.176752 GGTAGGGGAGCCTTGGCG 62.177 72.222 5.95 0.00 0.00 5.69
1803 2804 4.858680 GTAGGGGAGCCTTGGCGC 62.859 72.222 6.84 6.84 0.00 6.53
1819 2820 2.380081 CGCAGCGGTAAAAGTAGGG 58.620 57.895 7.00 0.00 0.00 3.53
1820 2821 0.108520 CGCAGCGGTAAAAGTAGGGA 60.109 55.000 7.00 0.00 0.00 4.20
1821 2822 1.673626 CGCAGCGGTAAAAGTAGGGAA 60.674 52.381 7.00 0.00 0.00 3.97
1822 2823 2.429478 GCAGCGGTAAAAGTAGGGAAA 58.571 47.619 0.00 0.00 0.00 3.13
1823 2824 2.418976 GCAGCGGTAAAAGTAGGGAAAG 59.581 50.000 0.00 0.00 0.00 2.62
1824 2825 3.007635 CAGCGGTAAAAGTAGGGAAAGG 58.992 50.000 0.00 0.00 0.00 3.11
1825 2826 1.741706 GCGGTAAAAGTAGGGAAAGGC 59.258 52.381 0.00 0.00 0.00 4.35
1826 2827 2.617276 GCGGTAAAAGTAGGGAAAGGCT 60.617 50.000 0.00 0.00 0.00 4.58
1827 2828 3.007635 CGGTAAAAGTAGGGAAAGGCTG 58.992 50.000 0.00 0.00 0.00 4.85
1828 2829 2.753452 GGTAAAAGTAGGGAAAGGCTGC 59.247 50.000 0.00 0.00 0.00 5.25
1829 2830 2.980246 AAAAGTAGGGAAAGGCTGCT 57.020 45.000 0.00 0.00 0.00 4.24
1830 2831 2.980246 AAAGTAGGGAAAGGCTGCTT 57.020 45.000 0.00 0.00 0.00 3.91
1831 2832 4.382386 AAAAGTAGGGAAAGGCTGCTTA 57.618 40.909 0.00 0.00 0.00 3.09
1832 2833 3.351794 AAGTAGGGAAAGGCTGCTTAC 57.648 47.619 0.00 0.00 0.00 2.34
1833 2834 2.266279 AGTAGGGAAAGGCTGCTTACA 58.734 47.619 0.00 0.00 31.24 2.41
1834 2835 2.642807 AGTAGGGAAAGGCTGCTTACAA 59.357 45.455 0.00 0.00 31.24 2.41
1835 2836 2.675658 AGGGAAAGGCTGCTTACAAA 57.324 45.000 0.00 0.00 0.00 2.83
1836 2837 2.957474 AGGGAAAGGCTGCTTACAAAA 58.043 42.857 0.00 0.00 0.00 2.44
1837 2838 2.893489 AGGGAAAGGCTGCTTACAAAAG 59.107 45.455 0.00 0.00 35.68 2.27
1838 2839 2.890945 GGGAAAGGCTGCTTACAAAAGA 59.109 45.455 0.00 0.00 34.37 2.52
1839 2840 3.305403 GGGAAAGGCTGCTTACAAAAGAC 60.305 47.826 0.00 0.00 34.37 3.01
1840 2841 3.305403 GGAAAGGCTGCTTACAAAAGACC 60.305 47.826 0.00 0.00 34.37 3.85
1841 2842 2.656947 AGGCTGCTTACAAAAGACCA 57.343 45.000 0.00 0.00 34.37 4.02
1842 2843 2.944129 AGGCTGCTTACAAAAGACCAA 58.056 42.857 0.00 0.00 34.37 3.67
1843 2844 3.295973 AGGCTGCTTACAAAAGACCAAA 58.704 40.909 0.00 0.00 34.37 3.28
1844 2845 3.704061 AGGCTGCTTACAAAAGACCAAAA 59.296 39.130 0.00 0.00 34.37 2.44
1845 2846 4.161377 AGGCTGCTTACAAAAGACCAAAAA 59.839 37.500 0.00 0.00 34.37 1.94
1846 2847 5.056480 GGCTGCTTACAAAAGACCAAAAAT 58.944 37.500 0.00 0.00 34.37 1.82
1847 2848 5.050159 GGCTGCTTACAAAAGACCAAAAATG 60.050 40.000 0.00 0.00 34.37 2.32
1848 2849 5.050159 GCTGCTTACAAAAGACCAAAAATGG 60.050 40.000 0.00 0.00 34.37 3.16
1849 2850 4.813697 TGCTTACAAAAGACCAAAAATGGC 59.186 37.500 0.00 0.00 34.37 4.40
1850 2851 4.213270 GCTTACAAAAGACCAAAAATGGCC 59.787 41.667 0.00 0.00 34.37 5.36
1851 2852 2.832563 ACAAAAGACCAAAAATGGCCG 58.167 42.857 0.00 0.00 0.00 6.13
1852 2853 2.142319 CAAAAGACCAAAAATGGCCGG 58.858 47.619 0.00 0.00 0.00 6.13
1853 2854 1.710816 AAAGACCAAAAATGGCCGGA 58.289 45.000 5.05 0.00 0.00 5.14
1854 2855 0.966179 AAGACCAAAAATGGCCGGAC 59.034 50.000 5.05 0.56 0.00 4.79
1855 2856 0.898326 AGACCAAAAATGGCCGGACC 60.898 55.000 3.83 6.37 39.84 4.46
1856 2857 1.884075 GACCAAAAATGGCCGGACCC 61.884 60.000 3.83 0.00 37.83 4.46
1857 2858 1.609210 CCAAAAATGGCCGGACCCT 60.609 57.895 3.83 0.00 37.83 4.34
1858 2859 1.191489 CCAAAAATGGCCGGACCCTT 61.191 55.000 3.83 1.83 37.83 3.95
1859 2860 0.246360 CAAAAATGGCCGGACCCTTC 59.754 55.000 3.83 0.00 37.83 3.46
1860 2861 0.114364 AAAAATGGCCGGACCCTTCT 59.886 50.000 3.83 0.00 37.83 2.85
1861 2862 0.611896 AAAATGGCCGGACCCTTCTG 60.612 55.000 3.83 0.00 37.83 3.02
1862 2863 3.645268 AATGGCCGGACCCTTCTGC 62.645 63.158 3.83 0.00 37.83 4.26
1866 2867 4.697756 CCGGACCCTTCTGCGCAA 62.698 66.667 13.05 0.00 0.00 4.85
1867 2868 3.121030 CGGACCCTTCTGCGCAAG 61.121 66.667 13.05 6.87 43.44 4.01
1887 2888 4.814294 GGAGCTACGTGCACCGGG 62.814 72.222 12.15 0.00 42.21 5.73
1898 2899 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
1958 2959 2.498167 AGGTGCATGTTTGACTGAGTC 58.502 47.619 5.47 5.47 0.00 3.36
1959 2960 2.158769 AGGTGCATGTTTGACTGAGTCA 60.159 45.455 11.93 11.93 41.09 3.41
2132 3133 7.833285 TTGGCTGTCTTACCTTTTTATTCTT 57.167 32.000 0.00 0.00 0.00 2.52
2532 3533 5.108517 TGCGTTGCTTGAATTTTCTTCTTT 58.891 33.333 0.00 0.00 0.00 2.52
2555 3556 5.823209 TCATGATGTATTGAGGCAGTTTG 57.177 39.130 0.00 0.00 0.00 2.93
2560 3561 4.829064 TGTATTGAGGCAGTTTGAACAC 57.171 40.909 0.00 0.00 0.00 3.32
2686 3689 3.384146 TGCAATCACTTGAAGCTTCCAAA 59.616 39.130 23.42 11.16 34.04 3.28
2691 3694 3.149196 CACTTGAAGCTTCCAAAGGCTA 58.851 45.455 23.42 0.00 37.87 3.93
2694 3697 4.835056 ACTTGAAGCTTCCAAAGGCTATTT 59.165 37.500 23.42 2.24 37.87 1.40
2697 3700 2.460669 AGCTTCCAAAGGCTATTTGGG 58.539 47.619 24.48 15.26 46.71 4.12
2698 3701 1.482182 GCTTCCAAAGGCTATTTGGGG 59.518 52.381 24.48 19.65 46.71 4.96
2729 3740 5.123820 TGGATTGTCTGCAGTATTAAACAGC 59.876 40.000 14.67 5.65 40.81 4.40
2925 4325 2.861147 ACCAAGAGGCTTGACTTACC 57.139 50.000 8.64 0.00 39.06 2.85
3022 5635 7.067859 GCACCTAACATGCATGGATATGATATT 59.932 37.037 29.41 13.96 42.88 1.28
3032 5645 9.358406 TGCATGGATATGATATTTCAACTTTCT 57.642 29.630 0.00 0.00 36.36 2.52
3135 6216 3.579709 GTTGCGTCAAAGAGATGAGAGA 58.420 45.455 0.00 0.00 35.12 3.10
3136 6217 3.500558 TGCGTCAAAGAGATGAGAGAG 57.499 47.619 0.00 0.00 35.12 3.20
3137 6218 3.084786 TGCGTCAAAGAGATGAGAGAGA 58.915 45.455 0.00 0.00 35.12 3.10
3138 6219 3.128415 TGCGTCAAAGAGATGAGAGAGAG 59.872 47.826 0.00 0.00 35.12 3.20
3177 6258 4.961099 ACTGATGAGGATGATGAGTTCAGA 59.039 41.667 0.00 0.00 37.89 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 6.677781 TGCCTTCTATATGTTGCAGTAAAC 57.322 37.500 0.00 0.00 0.00 2.01
34 36 5.061853 CAGATGCCTTCTATATGTTGCAGT 58.938 41.667 0.00 0.00 31.77 4.40
43 45 3.006537 GGTAACCGCAGATGCCTTCTATA 59.993 47.826 0.00 0.00 37.91 1.31
45 47 1.138266 GGTAACCGCAGATGCCTTCTA 59.862 52.381 0.00 0.00 37.91 2.10
122 124 1.623811 CCTTGGTATACCATCGGGAGG 59.376 57.143 25.12 22.36 46.97 4.30
125 127 0.036306 GGCCTTGGTATACCATCGGG 59.964 60.000 28.54 26.11 46.97 5.14
129 131 2.849943 TCAAGTGGCCTTGGTATACCAT 59.150 45.455 25.12 5.75 46.97 3.55
170 172 1.202758 TGAGCGGGTGTCAAACATTCT 60.203 47.619 0.00 0.00 0.00 2.40
174 176 0.107643 TCATGAGCGGGTGTCAAACA 59.892 50.000 0.00 0.00 0.00 2.83
191 193 2.693074 GCACCCCTCTTGTTTTCTTTCA 59.307 45.455 0.00 0.00 0.00 2.69
213 215 3.934962 GCTCCCATCTCCTCCGGC 61.935 72.222 0.00 0.00 0.00 6.13
306 308 7.947282 TGTCATGCATTTCATATCATGTCATT 58.053 30.769 0.00 0.00 37.95 2.57
323 325 3.991367 TGCATTTTGTTCATGTCATGCA 58.009 36.364 8.03 12.50 40.84 3.96
359 361 1.963464 TATTCCCTTCGTGGTCGGGC 61.963 60.000 0.00 0.00 37.89 6.13
420 422 3.524380 ACCCCGGATGTAACTTTCCATAA 59.476 43.478 0.73 0.00 31.99 1.90
485 487 5.809001 TGGTCAAAGCTTCATGTAAGAGAT 58.191 37.500 0.00 0.00 37.38 2.75
495 497 3.228188 AGGAACATGGTCAAAGCTTCA 57.772 42.857 13.90 0.00 0.00 3.02
496 498 3.305608 CCAAGGAACATGGTCAAAGCTTC 60.306 47.826 13.90 0.00 43.04 3.86
497 499 2.629617 CCAAGGAACATGGTCAAAGCTT 59.370 45.455 13.90 3.56 43.04 3.74
511 928 4.447138 ACCTTACAATCACACCAAGGAA 57.553 40.909 5.71 0.00 38.42 3.36
634 1053 7.039270 CACAGCAGTATAACATACTACCACAA 58.961 38.462 0.00 0.00 0.00 3.33
649 1068 6.605194 TCAGATCTCTCTTTACACAGCAGTAT 59.395 38.462 0.00 0.00 0.00 2.12
650 1069 5.946377 TCAGATCTCTCTTTACACAGCAGTA 59.054 40.000 0.00 0.00 0.00 2.74
651 1070 4.769488 TCAGATCTCTCTTTACACAGCAGT 59.231 41.667 0.00 0.00 0.00 4.40
652 1071 5.321959 TCAGATCTCTCTTTACACAGCAG 57.678 43.478 0.00 0.00 0.00 4.24
653 1072 5.337089 CCTTCAGATCTCTCTTTACACAGCA 60.337 44.000 0.00 0.00 0.00 4.41
654 1073 5.105554 TCCTTCAGATCTCTCTTTACACAGC 60.106 44.000 0.00 0.00 0.00 4.40
655 1074 6.522625 TCCTTCAGATCTCTCTTTACACAG 57.477 41.667 0.00 0.00 0.00 3.66
656 1075 7.326454 CAATCCTTCAGATCTCTCTTTACACA 58.674 38.462 0.00 0.00 32.47 3.72
657 1076 6.760770 CCAATCCTTCAGATCTCTCTTTACAC 59.239 42.308 0.00 0.00 32.47 2.90
658 1077 6.669591 TCCAATCCTTCAGATCTCTCTTTACA 59.330 38.462 0.00 0.00 32.47 2.41
659 1078 7.118496 TCCAATCCTTCAGATCTCTCTTTAC 57.882 40.000 0.00 0.00 32.47 2.01
660 1079 7.739995 TTCCAATCCTTCAGATCTCTCTTTA 57.260 36.000 0.00 0.00 32.47 1.85
661 1080 6.633325 TTCCAATCCTTCAGATCTCTCTTT 57.367 37.500 0.00 0.00 32.47 2.52
662 1081 6.828307 ATTCCAATCCTTCAGATCTCTCTT 57.172 37.500 0.00 0.00 32.47 2.85
663 1082 7.733955 TGATATTCCAATCCTTCAGATCTCTCT 59.266 37.037 0.00 0.00 32.47 3.10
664 1083 7.818930 GTGATATTCCAATCCTTCAGATCTCTC 59.181 40.741 0.00 0.00 32.47 3.20
665 1084 7.256619 GGTGATATTCCAATCCTTCAGATCTCT 60.257 40.741 0.00 0.00 32.47 3.10
666 1085 6.878389 GGTGATATTCCAATCCTTCAGATCTC 59.122 42.308 0.00 0.00 32.47 2.75
667 1086 6.331042 TGGTGATATTCCAATCCTTCAGATCT 59.669 38.462 0.00 0.00 32.47 2.75
668 1087 6.537355 TGGTGATATTCCAATCCTTCAGATC 58.463 40.000 0.00 0.00 32.47 2.75
669 1088 6.520021 TGGTGATATTCCAATCCTTCAGAT 57.480 37.500 0.00 0.00 36.48 2.90
670 1089 5.974156 TGGTGATATTCCAATCCTTCAGA 57.026 39.130 0.00 0.00 31.50 3.27
671 1090 6.830324 TCTTTGGTGATATTCCAATCCTTCAG 59.170 38.462 12.09 7.38 43.25 3.02
672 1091 6.730447 TCTTTGGTGATATTCCAATCCTTCA 58.270 36.000 12.09 0.00 43.25 3.02
673 1092 7.340487 AGTTCTTTGGTGATATTCCAATCCTTC 59.660 37.037 12.09 5.42 43.25 3.46
674 1093 7.184862 AGTTCTTTGGTGATATTCCAATCCTT 58.815 34.615 12.09 0.00 43.25 3.36
675 1094 6.735556 AGTTCTTTGGTGATATTCCAATCCT 58.264 36.000 12.09 5.64 43.25 3.24
676 1095 7.255277 GCTAGTTCTTTGGTGATATTCCAATCC 60.255 40.741 12.09 4.08 43.25 3.01
677 1096 7.255277 GGCTAGTTCTTTGGTGATATTCCAATC 60.255 40.741 12.09 6.12 43.25 2.67
678 1097 6.547510 GGCTAGTTCTTTGGTGATATTCCAAT 59.452 38.462 12.09 3.03 43.25 3.16
679 1098 5.885912 GGCTAGTTCTTTGGTGATATTCCAA 59.114 40.000 8.59 8.59 42.29 3.53
680 1099 5.045213 TGGCTAGTTCTTTGGTGATATTCCA 60.045 40.000 0.00 0.00 0.00 3.53
681 1100 5.437060 TGGCTAGTTCTTTGGTGATATTCC 58.563 41.667 0.00 0.00 0.00 3.01
682 1101 6.016777 CCATGGCTAGTTCTTTGGTGATATTC 60.017 42.308 0.00 0.00 0.00 1.75
683 1102 5.829924 CCATGGCTAGTTCTTTGGTGATATT 59.170 40.000 0.00 0.00 0.00 1.28
684 1103 5.132648 TCCATGGCTAGTTCTTTGGTGATAT 59.867 40.000 6.96 0.00 0.00 1.63
685 1104 4.473196 TCCATGGCTAGTTCTTTGGTGATA 59.527 41.667 6.96 0.00 0.00 2.15
686 1105 3.266772 TCCATGGCTAGTTCTTTGGTGAT 59.733 43.478 6.96 0.00 0.00 3.06
687 1106 2.642311 TCCATGGCTAGTTCTTTGGTGA 59.358 45.455 6.96 0.00 0.00 4.02
688 1107 2.749621 GTCCATGGCTAGTTCTTTGGTG 59.250 50.000 6.96 0.00 0.00 4.17
689 1108 2.375174 TGTCCATGGCTAGTTCTTTGGT 59.625 45.455 6.96 0.00 0.00 3.67
690 1109 3.012518 CTGTCCATGGCTAGTTCTTTGG 58.987 50.000 6.96 0.00 0.00 3.28
691 1110 3.012518 CCTGTCCATGGCTAGTTCTTTG 58.987 50.000 6.96 0.00 0.00 2.77
692 1111 2.025887 CCCTGTCCATGGCTAGTTCTTT 60.026 50.000 6.96 0.00 0.00 2.52
693 1112 1.561542 CCCTGTCCATGGCTAGTTCTT 59.438 52.381 6.96 0.00 0.00 2.52
694 1113 1.207791 CCCTGTCCATGGCTAGTTCT 58.792 55.000 6.96 0.00 0.00 3.01
695 1114 0.181350 CCCCTGTCCATGGCTAGTTC 59.819 60.000 6.96 0.00 0.00 3.01
696 1115 0.550147 ACCCCTGTCCATGGCTAGTT 60.550 55.000 6.96 0.00 0.00 2.24
697 1116 1.082954 ACCCCTGTCCATGGCTAGT 59.917 57.895 6.96 0.00 0.00 2.57
698 1117 1.528824 CACCCCTGTCCATGGCTAG 59.471 63.158 6.96 7.49 0.00 3.42
699 1118 2.679342 GCACCCCTGTCCATGGCTA 61.679 63.158 6.96 0.00 0.00 3.93
700 1119 4.052518 GCACCCCTGTCCATGGCT 62.053 66.667 6.96 0.00 0.00 4.75
702 1121 4.033776 ACGCACCCCTGTCCATGG 62.034 66.667 4.97 4.97 0.00 3.66
703 1122 2.747460 CACGCACCCCTGTCCATG 60.747 66.667 0.00 0.00 0.00 3.66
704 1123 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
706 1125 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
707 1126 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
708 1127 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
709 1128 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
710 1129 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
711 1130 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
712 1131 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
713 1132 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
714 1133 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
715 1134 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
716 1135 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
717 1136 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
718 1137 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
719 1138 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
720 1139 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
721 1140 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
722 1141 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
723 1142 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
724 1143 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
725 1144 2.336945 TCTGGCACATGGATAGCAAG 57.663 50.000 0.00 0.00 38.20 4.01
726 1145 2.368439 GTTCTGGCACATGGATAGCAA 58.632 47.619 0.00 0.00 38.20 3.91
727 1146 1.408683 GGTTCTGGCACATGGATAGCA 60.409 52.381 0.00 0.00 38.20 3.49
728 1147 1.312815 GGTTCTGGCACATGGATAGC 58.687 55.000 0.00 0.00 38.20 2.97
729 1148 2.715749 TGGTTCTGGCACATGGATAG 57.284 50.000 0.00 0.00 38.20 2.08
730 1149 2.509131 TCATGGTTCTGGCACATGGATA 59.491 45.455 13.76 0.00 41.64 2.59
731 1150 1.285667 TCATGGTTCTGGCACATGGAT 59.714 47.619 13.76 0.00 41.64 3.41
732 1151 0.697658 TCATGGTTCTGGCACATGGA 59.302 50.000 13.76 0.00 41.64 3.41
733 1152 1.100510 CTCATGGTTCTGGCACATGG 58.899 55.000 13.76 3.90 41.64 3.66
734 1153 1.830279 ACTCATGGTTCTGGCACATG 58.170 50.000 8.97 8.97 42.44 3.21
735 1154 2.165167 CAACTCATGGTTCTGGCACAT 58.835 47.619 0.00 0.00 34.52 3.21
736 1155 1.608055 CAACTCATGGTTCTGGCACA 58.392 50.000 0.00 0.00 35.74 4.57
737 1156 0.883833 CCAACTCATGGTTCTGGCAC 59.116 55.000 0.00 0.00 44.85 5.01
738 1157 3.344703 CCAACTCATGGTTCTGGCA 57.655 52.632 0.00 0.00 44.85 4.92
747 1166 1.134580 AGATCTCGTGGCCAACTCATG 60.135 52.381 7.24 0.00 0.00 3.07
748 1167 1.198713 AGATCTCGTGGCCAACTCAT 58.801 50.000 7.24 0.00 0.00 2.90
749 1168 0.976641 AAGATCTCGTGGCCAACTCA 59.023 50.000 7.24 0.00 0.00 3.41
750 1169 2.961526 TAAGATCTCGTGGCCAACTC 57.038 50.000 7.24 0.00 0.00 3.01
751 1170 2.158900 CCATAAGATCTCGTGGCCAACT 60.159 50.000 7.24 0.00 0.00 3.16
752 1171 2.213499 CCATAAGATCTCGTGGCCAAC 58.787 52.381 7.24 0.15 0.00 3.77
753 1172 1.140852 CCCATAAGATCTCGTGGCCAA 59.859 52.381 7.24 0.00 0.00 4.52
754 1173 0.758734 CCCATAAGATCTCGTGGCCA 59.241 55.000 17.01 0.00 0.00 5.36
755 1174 0.759346 ACCCATAAGATCTCGTGGCC 59.241 55.000 17.01 0.00 0.00 5.36
756 1175 2.622064 AACCCATAAGATCTCGTGGC 57.378 50.000 17.01 0.00 0.00 5.01
757 1176 3.123804 CGAAACCCATAAGATCTCGTGG 58.876 50.000 15.95 15.95 0.00 4.94
758 1177 2.540101 GCGAAACCCATAAGATCTCGTG 59.460 50.000 0.00 0.00 0.00 4.35
759 1178 2.483188 GGCGAAACCCATAAGATCTCGT 60.483 50.000 0.00 0.00 0.00 4.18
760 1179 2.135933 GGCGAAACCCATAAGATCTCG 58.864 52.381 0.00 0.00 0.00 4.04
761 1180 3.070302 AGAGGCGAAACCCATAAGATCTC 59.930 47.826 0.00 0.00 40.58 2.75
762 1181 3.041946 AGAGGCGAAACCCATAAGATCT 58.958 45.455 0.00 0.00 40.58 2.75
763 1182 3.477210 AGAGGCGAAACCCATAAGATC 57.523 47.619 0.00 0.00 40.58 2.75
764 1183 3.244249 GCTAGAGGCGAAACCCATAAGAT 60.244 47.826 0.00 0.00 40.58 2.40
765 1184 2.102588 GCTAGAGGCGAAACCCATAAGA 59.897 50.000 0.00 0.00 40.58 2.10
766 1185 2.484889 GCTAGAGGCGAAACCCATAAG 58.515 52.381 0.00 0.00 40.58 1.73
767 1186 1.140252 GGCTAGAGGCGAAACCCATAA 59.860 52.381 0.00 0.00 42.94 1.90
768 1187 0.756903 GGCTAGAGGCGAAACCCATA 59.243 55.000 0.00 0.00 42.94 2.74
769 1188 0.983378 AGGCTAGAGGCGAAACCCAT 60.983 55.000 0.00 0.00 46.23 4.00
770 1189 0.324923 TAGGCTAGAGGCGAAACCCA 60.325 55.000 0.00 0.00 46.23 4.51
771 1190 0.104487 GTAGGCTAGAGGCGAAACCC 59.896 60.000 0.00 0.00 46.23 4.11
772 1191 0.104487 GGTAGGCTAGAGGCGAAACC 59.896 60.000 0.00 8.72 46.23 3.27
773 1192 0.104487 GGGTAGGCTAGAGGCGAAAC 59.896 60.000 0.00 0.00 46.23 2.78
774 1193 1.047034 GGGGTAGGCTAGAGGCGAAA 61.047 60.000 0.00 0.00 46.23 3.46
775 1194 1.457079 GGGGTAGGCTAGAGGCGAA 60.457 63.158 0.00 0.00 46.23 4.70
776 1195 2.197875 GGGGTAGGCTAGAGGCGA 59.802 66.667 0.00 0.00 46.23 5.54
777 1196 1.760875 TTGGGGTAGGCTAGAGGCG 60.761 63.158 0.00 0.00 46.23 5.52
778 1197 0.691413 AGTTGGGGTAGGCTAGAGGC 60.691 60.000 0.00 0.00 41.43 4.70
779 1198 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
780 1199 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
781 1200 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
782 1201 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
783 1202 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
784 1203 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
793 1212 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
794 1213 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
795 1214 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
796 1215 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
797 1216 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
798 1217 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
799 1218 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
800 1219 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
801 1220 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
802 1221 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
803 1222 4.395625 ACTACAACAAAGCCTTTAGTCCC 58.604 43.478 0.00 0.00 0.00 4.46
804 1223 5.298527 ACAACTACAACAAAGCCTTTAGTCC 59.701 40.000 0.00 0.00 0.00 3.85
805 1224 6.373186 ACAACTACAACAAAGCCTTTAGTC 57.627 37.500 0.00 0.00 0.00 2.59
806 1225 6.405397 CCAACAACTACAACAAAGCCTTTAGT 60.405 38.462 0.00 0.00 0.00 2.24
807 1226 5.977129 CCAACAACTACAACAAAGCCTTTAG 59.023 40.000 0.00 0.00 0.00 1.85
808 1227 5.419471 ACCAACAACTACAACAAAGCCTTTA 59.581 36.000 0.00 0.00 0.00 1.85
809 1228 4.221924 ACCAACAACTACAACAAAGCCTTT 59.778 37.500 0.00 0.00 0.00 3.11
810 1229 3.767131 ACCAACAACTACAACAAAGCCTT 59.233 39.130 0.00 0.00 0.00 4.35
811 1230 3.130340 CACCAACAACTACAACAAAGCCT 59.870 43.478 0.00 0.00 0.00 4.58
812 1231 3.119280 ACACCAACAACTACAACAAAGCC 60.119 43.478 0.00 0.00 0.00 4.35
813 1232 4.104696 ACACCAACAACTACAACAAAGC 57.895 40.909 0.00 0.00 0.00 3.51
814 1233 5.465935 ACAACACCAACAACTACAACAAAG 58.534 37.500 0.00 0.00 0.00 2.77
815 1234 5.455056 ACAACACCAACAACTACAACAAA 57.545 34.783 0.00 0.00 0.00 2.83
816 1235 5.455056 AACAACACCAACAACTACAACAA 57.545 34.783 0.00 0.00 0.00 2.83
817 1236 5.455056 AAACAACACCAACAACTACAACA 57.545 34.783 0.00 0.00 0.00 3.33
818 1237 6.772770 AAAAACAACACCAACAACTACAAC 57.227 33.333 0.00 0.00 0.00 3.32
838 1257 9.737427 CACCAGTATAACATACAACAACAAAAA 57.263 29.630 0.00 0.00 0.00 1.94
839 1258 8.904834 ACACCAGTATAACATACAACAACAAAA 58.095 29.630 0.00 0.00 0.00 2.44
840 1259 8.346300 CACACCAGTATAACATACAACAACAAA 58.654 33.333 0.00 0.00 0.00 2.83
841 1260 7.499563 ACACACCAGTATAACATACAACAACAA 59.500 33.333 0.00 0.00 0.00 2.83
842 1261 6.993308 ACACACCAGTATAACATACAACAACA 59.007 34.615 0.00 0.00 0.00 3.33
843 1262 7.041644 ACACACACCAGTATAACATACAACAAC 60.042 37.037 0.00 0.00 0.00 3.32
844 1263 6.993308 ACACACACCAGTATAACATACAACAA 59.007 34.615 0.00 0.00 0.00 2.83
845 1264 6.425417 CACACACACCAGTATAACATACAACA 59.575 38.462 0.00 0.00 0.00 3.33
846 1265 6.619874 GCACACACACCAGTATAACATACAAC 60.620 42.308 0.00 0.00 0.00 3.32
847 1266 5.410132 GCACACACACCAGTATAACATACAA 59.590 40.000 0.00 0.00 0.00 2.41
848 1267 4.932799 GCACACACACCAGTATAACATACA 59.067 41.667 0.00 0.00 0.00 2.29
849 1268 4.331717 GGCACACACACCAGTATAACATAC 59.668 45.833 0.00 0.00 0.00 2.39
850 1269 4.224147 AGGCACACACACCAGTATAACATA 59.776 41.667 0.00 0.00 0.00 2.29
851 1270 3.009033 AGGCACACACACCAGTATAACAT 59.991 43.478 0.00 0.00 0.00 2.71
852 1271 2.370519 AGGCACACACACCAGTATAACA 59.629 45.455 0.00 0.00 0.00 2.41
853 1272 3.053831 AGGCACACACACCAGTATAAC 57.946 47.619 0.00 0.00 0.00 1.89
854 1273 3.780804 AAGGCACACACACCAGTATAA 57.219 42.857 0.00 0.00 0.00 0.98
855 1274 4.893829 TTAAGGCACACACACCAGTATA 57.106 40.909 0.00 0.00 0.00 1.47
856 1275 3.780804 TTAAGGCACACACACCAGTAT 57.219 42.857 0.00 0.00 0.00 2.12
895 1315 4.473444 AGGAACAACAATCCAGACATTGT 58.527 39.130 0.00 0.00 46.85 2.71
896 1316 5.458041 AAGGAACAACAATCCAGACATTG 57.542 39.130 0.00 0.00 39.55 2.82
897 1317 7.781324 ATTAAGGAACAACAATCCAGACATT 57.219 32.000 0.00 0.00 39.55 2.71
898 1318 7.605449 CAATTAAGGAACAACAATCCAGACAT 58.395 34.615 0.00 0.00 39.55 3.06
906 1326 6.127619 GCCTAGAGCAATTAAGGAACAACAAT 60.128 38.462 0.00 0.00 42.97 2.71
970 1401 9.219603 CCTTTACTCTGAAATAGTCAATCAACA 57.780 33.333 0.00 0.00 35.22 3.33
981 1566 7.200434 AGGCATCTTCCTTTACTCTGAAATA 57.800 36.000 0.00 0.00 30.82 1.40
1060 1897 8.239038 TGTCTATTAGAAAGGTGTGATAGGAG 57.761 38.462 0.00 0.00 0.00 3.69
1105 1942 8.548880 ACTACTCATTACCAATACCATGTACT 57.451 34.615 0.00 0.00 0.00 2.73
1159 1996 0.254178 ACCAACTGATAGGGCTGCTG 59.746 55.000 0.00 0.00 0.00 4.41
1162 1999 3.279434 GGTAAACCAACTGATAGGGCTG 58.721 50.000 0.00 0.00 35.64 4.85
1166 2003 6.095021 GCTAAAAGGGTAAACCAACTGATAGG 59.905 42.308 0.81 0.00 43.89 2.57
1176 2013 4.436242 GCTGAAGCTAAAAGGGTAAACC 57.564 45.455 0.00 0.00 38.21 3.27
1223 2061 1.901833 TGATGAAGAGCTAGGTGCACA 59.098 47.619 20.43 0.00 45.94 4.57
1234 2072 8.719648 GTGGCTAATTCTAATGATGATGAAGAG 58.280 37.037 0.00 0.00 0.00 2.85
1272 2110 8.571461 TTTCTCCTCAAATGCCATCATATATC 57.429 34.615 0.00 0.00 31.46 1.63
1276 2114 6.608405 ACATTTTCTCCTCAAATGCCATCATA 59.392 34.615 5.49 0.00 42.91 2.15
1326 2164 7.359264 GCATTCACGGTATAACTACAGCATAAG 60.359 40.741 0.00 0.00 0.00 1.73
1346 2184 3.523564 ACTTAGCCCTCCTTAAGCATTCA 59.476 43.478 0.00 0.00 0.00 2.57
1428 2269 5.266242 CAAGCTGAGTGTGTGTTAAGAAAC 58.734 41.667 0.00 0.00 36.07 2.78
1436 2277 0.533755 GGAGCAAGCTGAGTGTGTGT 60.534 55.000 0.00 0.00 0.00 3.72
1455 2296 6.531948 CAGGTTAAAGATACTTGAGGAGAACG 59.468 42.308 0.00 0.00 0.00 3.95
1479 2320 4.899457 TGTTAGTTCTCCTGGAAACTCTCA 59.101 41.667 20.18 17.52 35.51 3.27
1496 2338 0.889306 GGAGCGACCAGACTGTTAGT 59.111 55.000 0.93 0.00 38.79 2.24
1497 2339 0.888619 TGGAGCGACCAGACTGTTAG 59.111 55.000 0.93 0.00 44.64 2.34
1498 2340 3.045518 TGGAGCGACCAGACTGTTA 57.954 52.632 0.93 0.00 44.64 2.41
1579 2424 7.687941 TCCTTGGAGCAGTTTTTATTAGAAG 57.312 36.000 0.00 0.00 0.00 2.85
1582 2428 8.055279 TGATTCCTTGGAGCAGTTTTTATTAG 57.945 34.615 0.00 0.00 0.00 1.73
1587 2433 5.070847 ACATTGATTCCTTGGAGCAGTTTTT 59.929 36.000 0.00 0.00 0.00 1.94
1609 2455 5.089970 ACATGTTATGCTGCTAGAGAACA 57.910 39.130 0.00 0.99 0.00 3.18
1615 2461 4.993584 CCCTCTTACATGTTATGCTGCTAG 59.006 45.833 2.30 0.00 0.00 3.42
1617 2463 3.813443 CCCTCTTACATGTTATGCTGCT 58.187 45.455 2.30 0.00 0.00 4.24
1645 2496 4.615541 GCAACGTATAAAGTGCCTGAAAAC 59.384 41.667 0.00 0.00 0.00 2.43
1655 2506 3.688694 TCAGGGTGCAACGTATAAAGT 57.311 42.857 0.00 0.00 38.12 2.66
1672 2540 8.085720 TGGAAAAACACAATTTGCATATTCAG 57.914 30.769 0.00 0.00 33.90 3.02
1673 2541 8.618702 ATGGAAAAACACAATTTGCATATTCA 57.381 26.923 0.00 0.00 43.93 2.57
1695 2563 4.096984 GCTGGTTCTCCATCTTGTAAATGG 59.903 45.833 0.00 0.00 43.43 3.16
1757 2633 5.205056 ACATCAAGGGTAAACAGGACAAAA 58.795 37.500 0.00 0.00 0.00 2.44
1759 2635 4.447138 ACATCAAGGGTAAACAGGACAA 57.553 40.909 0.00 0.00 0.00 3.18
1773 2774 3.496870 GCTCCCCTACCCATAACATCAAG 60.497 52.174 0.00 0.00 0.00 3.02
1780 2781 1.518367 CAAGGCTCCCCTACCCATAA 58.482 55.000 0.00 0.00 41.90 1.90
1781 2782 0.401395 CCAAGGCTCCCCTACCCATA 60.401 60.000 0.00 0.00 41.90 2.74
1782 2783 1.697754 CCAAGGCTCCCCTACCCAT 60.698 63.158 0.00 0.00 41.90 4.00
1783 2784 2.286121 CCAAGGCTCCCCTACCCA 60.286 66.667 0.00 0.00 41.90 4.51
1784 2785 3.810188 GCCAAGGCTCCCCTACCC 61.810 72.222 3.29 0.00 41.90 3.69
1785 2786 4.176752 CGCCAAGGCTCCCCTACC 62.177 72.222 9.73 0.00 41.90 3.18
1786 2787 4.858680 GCGCCAAGGCTCCCCTAC 62.859 72.222 9.73 0.00 41.90 3.18
1795 2796 2.527547 CTTTTACCGCTGCGCCAAGG 62.528 60.000 18.00 7.86 0.00 3.61
1796 2797 1.154225 CTTTTACCGCTGCGCCAAG 60.154 57.895 18.00 10.90 0.00 3.61
1797 2798 0.603172 TACTTTTACCGCTGCGCCAA 60.603 50.000 18.00 9.47 0.00 4.52
1798 2799 1.004799 TACTTTTACCGCTGCGCCA 60.005 52.632 18.00 2.77 0.00 5.69
1799 2800 1.702491 CCTACTTTTACCGCTGCGCC 61.702 60.000 18.00 0.00 0.00 6.53
1800 2801 1.702491 CCCTACTTTTACCGCTGCGC 61.702 60.000 18.00 0.00 0.00 6.09
1801 2802 0.108520 TCCCTACTTTTACCGCTGCG 60.109 55.000 16.34 16.34 0.00 5.18
1802 2803 2.103537 TTCCCTACTTTTACCGCTGC 57.896 50.000 0.00 0.00 0.00 5.25
1803 2804 3.007635 CCTTTCCCTACTTTTACCGCTG 58.992 50.000 0.00 0.00 0.00 5.18
1804 2805 2.617276 GCCTTTCCCTACTTTTACCGCT 60.617 50.000 0.00 0.00 0.00 5.52
1805 2806 1.741706 GCCTTTCCCTACTTTTACCGC 59.258 52.381 0.00 0.00 0.00 5.68
1806 2807 3.007635 CAGCCTTTCCCTACTTTTACCG 58.992 50.000 0.00 0.00 0.00 4.02
1807 2808 2.753452 GCAGCCTTTCCCTACTTTTACC 59.247 50.000 0.00 0.00 0.00 2.85
1808 2809 3.687125 AGCAGCCTTTCCCTACTTTTAC 58.313 45.455 0.00 0.00 0.00 2.01
1809 2810 4.382386 AAGCAGCCTTTCCCTACTTTTA 57.618 40.909 0.00 0.00 0.00 1.52
1810 2811 2.980246 AGCAGCCTTTCCCTACTTTT 57.020 45.000 0.00 0.00 0.00 2.27
1811 2812 2.980246 AAGCAGCCTTTCCCTACTTT 57.020 45.000 0.00 0.00 0.00 2.66
1812 2813 2.642807 TGTAAGCAGCCTTTCCCTACTT 59.357 45.455 0.00 0.00 32.47 2.24
1813 2814 2.266279 TGTAAGCAGCCTTTCCCTACT 58.734 47.619 0.00 0.00 32.47 2.57
1814 2815 2.781681 TGTAAGCAGCCTTTCCCTAC 57.218 50.000 0.00 0.00 32.47 3.18
1815 2816 3.799432 TTTGTAAGCAGCCTTTCCCTA 57.201 42.857 0.00 0.00 32.47 3.53
1816 2817 2.675658 TTTGTAAGCAGCCTTTCCCT 57.324 45.000 0.00 0.00 32.47 4.20
1817 2818 2.890945 TCTTTTGTAAGCAGCCTTTCCC 59.109 45.455 0.00 0.00 32.47 3.97
1818 2819 3.305403 GGTCTTTTGTAAGCAGCCTTTCC 60.305 47.826 0.00 0.00 32.47 3.13
1819 2820 3.317993 TGGTCTTTTGTAAGCAGCCTTTC 59.682 43.478 0.00 0.00 32.47 2.62
1820 2821 3.295973 TGGTCTTTTGTAAGCAGCCTTT 58.704 40.909 0.00 0.00 32.47 3.11
1821 2822 2.944129 TGGTCTTTTGTAAGCAGCCTT 58.056 42.857 0.00 0.00 35.05 4.35
1822 2823 2.656947 TGGTCTTTTGTAAGCAGCCT 57.343 45.000 0.00 0.00 0.00 4.58
1823 2824 3.726291 TTTGGTCTTTTGTAAGCAGCC 57.274 42.857 0.00 0.00 0.00 4.85
1824 2825 5.050159 CCATTTTTGGTCTTTTGTAAGCAGC 60.050 40.000 0.00 0.00 0.00 5.25
1825 2826 5.050159 GCCATTTTTGGTCTTTTGTAAGCAG 60.050 40.000 0.00 0.00 0.00 4.24
1826 2827 4.813697 GCCATTTTTGGTCTTTTGTAAGCA 59.186 37.500 0.00 0.00 0.00 3.91
1827 2828 4.213270 GGCCATTTTTGGTCTTTTGTAAGC 59.787 41.667 0.00 0.00 0.00 3.09
1828 2829 4.447389 CGGCCATTTTTGGTCTTTTGTAAG 59.553 41.667 2.24 0.00 0.00 2.34
1829 2830 4.372656 CGGCCATTTTTGGTCTTTTGTAA 58.627 39.130 2.24 0.00 0.00 2.41
1830 2831 3.243907 CCGGCCATTTTTGGTCTTTTGTA 60.244 43.478 2.24 0.00 0.00 2.41
1831 2832 2.484594 CCGGCCATTTTTGGTCTTTTGT 60.485 45.455 2.24 0.00 0.00 2.83
1832 2833 2.142319 CCGGCCATTTTTGGTCTTTTG 58.858 47.619 2.24 0.00 0.00 2.44
1833 2834 2.043227 TCCGGCCATTTTTGGTCTTTT 58.957 42.857 2.24 0.00 0.00 2.27
1834 2835 1.343142 GTCCGGCCATTTTTGGTCTTT 59.657 47.619 2.24 0.00 0.00 2.52
1835 2836 0.966179 GTCCGGCCATTTTTGGTCTT 59.034 50.000 2.24 0.00 0.00 3.01
1836 2837 0.898326 GGTCCGGCCATTTTTGGTCT 60.898 55.000 2.24 0.00 37.17 3.85
1837 2838 1.589630 GGTCCGGCCATTTTTGGTC 59.410 57.895 2.24 0.00 37.17 4.02
1838 2839 1.911269 GGGTCCGGCCATTTTTGGT 60.911 57.895 15.49 0.00 39.65 3.67
1839 2840 1.191489 AAGGGTCCGGCCATTTTTGG 61.191 55.000 15.49 0.00 38.18 3.28
1840 2841 0.246360 GAAGGGTCCGGCCATTTTTG 59.754 55.000 14.47 0.00 41.95 2.44
1841 2842 0.114364 AGAAGGGTCCGGCCATTTTT 59.886 50.000 14.47 5.66 41.95 1.94
1842 2843 0.611896 CAGAAGGGTCCGGCCATTTT 60.612 55.000 14.47 7.68 41.95 1.82
1843 2844 1.000896 CAGAAGGGTCCGGCCATTT 60.001 57.895 14.47 9.17 41.95 2.32
1844 2845 2.677228 CAGAAGGGTCCGGCCATT 59.323 61.111 13.44 13.44 44.97 3.16
1845 2846 4.115199 GCAGAAGGGTCCGGCCAT 62.115 66.667 15.49 6.74 39.65 4.40
1849 2850 4.697756 TTGCGCAGAAGGGTCCGG 62.698 66.667 11.31 0.00 0.00 5.14
1850 2851 3.121030 CTTGCGCAGAAGGGTCCG 61.121 66.667 11.31 0.00 0.00 4.79
1851 2852 3.435186 GCTTGCGCAGAAGGGTCC 61.435 66.667 11.31 0.00 35.78 4.46
1852 2853 3.793144 CGCTTGCGCAGAAGGGTC 61.793 66.667 11.31 0.00 35.30 4.46
1856 2857 3.494336 CTCCCGCTTGCGCAGAAG 61.494 66.667 11.31 7.59 35.30 2.85
1859 2860 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1862 2863 4.796231 ACGTAGCTCCCGCTTGCG 62.796 66.667 8.14 8.14 46.47 4.85
1863 2864 3.188786 CACGTAGCTCCCGCTTGC 61.189 66.667 5.69 0.00 46.47 4.01
1864 2865 3.188786 GCACGTAGCTCCCGCTTG 61.189 66.667 5.69 0.00 46.47 4.01
1865 2866 3.691342 TGCACGTAGCTCCCGCTT 61.691 61.111 10.54 0.00 46.47 4.68
1896 2897 6.865834 ATGCCATAATGTCAAGGGTAAAAA 57.134 33.333 0.00 0.00 0.00 1.94
1897 2898 8.546083 AATATGCCATAATGTCAAGGGTAAAA 57.454 30.769 0.00 0.00 0.00 1.52
1898 2899 8.420222 CAAATATGCCATAATGTCAAGGGTAAA 58.580 33.333 0.00 0.00 0.00 2.01
1899 2900 7.563188 ACAAATATGCCATAATGTCAAGGGTAA 59.437 33.333 1.82 0.00 0.00 2.85
1900 2901 7.014134 CACAAATATGCCATAATGTCAAGGGTA 59.986 37.037 4.15 0.00 0.00 3.69
1901 2902 5.898972 ACAAATATGCCATAATGTCAAGGGT 59.101 36.000 1.82 0.00 0.00 4.34
1902 2903 6.183360 ACACAAATATGCCATAATGTCAAGGG 60.183 38.462 4.15 0.00 0.00 3.95
1903 2904 6.808829 ACACAAATATGCCATAATGTCAAGG 58.191 36.000 4.15 0.00 0.00 3.61
1904 2905 9.236691 GTTACACAAATATGCCATAATGTCAAG 57.763 33.333 4.15 0.00 0.00 3.02
1905 2906 8.965819 AGTTACACAAATATGCCATAATGTCAA 58.034 29.630 4.15 0.90 0.00 3.18
1906 2907 8.518430 AGTTACACAAATATGCCATAATGTCA 57.482 30.769 4.15 0.00 0.00 3.58
1907 2908 9.801873 AAAGTTACACAAATATGCCATAATGTC 57.198 29.630 4.15 0.00 0.00 3.06
1958 2959 6.629128 TGTTGCTGGGTCATAAAATACAATG 58.371 36.000 0.00 0.00 0.00 2.82
1959 2960 6.849085 TGTTGCTGGGTCATAAAATACAAT 57.151 33.333 0.00 0.00 0.00 2.71
2106 3107 8.422577 AGAATAAAAAGGTAAGACAGCCAAAT 57.577 30.769 0.00 0.00 0.00 2.32
2163 3164 2.815211 CGTGCCGCACTGCATAGT 60.815 61.111 20.87 0.00 44.30 2.12
2213 3214 2.660189 TTTACGTCCCGTCATCTTCC 57.340 50.000 0.00 0.00 41.54 3.46
2265 3266 1.852942 ACTCGTACAGCATATTGCCG 58.147 50.000 0.00 0.00 46.52 5.69
2532 3533 5.945191 TCAAACTGCCTCAATACATCATGAA 59.055 36.000 0.00 0.00 0.00 2.57
2555 3556 1.658994 TGGAACCAGTGAACGTGTTC 58.341 50.000 5.80 5.80 39.91 3.18
2560 3561 2.226330 TGGAAATGGAACCAGTGAACG 58.774 47.619 0.00 0.00 0.00 3.95
2639 3640 2.151202 TCAATCGTCCCAAGAAACAGC 58.849 47.619 0.00 0.00 0.00 4.40
2646 3647 2.293122 TGCAAAGTTCAATCGTCCCAAG 59.707 45.455 0.00 0.00 0.00 3.61
2686 3689 1.561542 CAGTGAGACCCCAAATAGCCT 59.438 52.381 0.00 0.00 0.00 4.58
2691 3694 2.379907 ACAATCCAGTGAGACCCCAAAT 59.620 45.455 0.00 0.00 0.00 2.32
2694 3697 0.984230 GACAATCCAGTGAGACCCCA 59.016 55.000 0.00 0.00 0.00 4.96
2697 3700 1.002430 TGCAGACAATCCAGTGAGACC 59.998 52.381 0.00 0.00 0.00 3.85
2698 3701 2.289320 ACTGCAGACAATCCAGTGAGAC 60.289 50.000 23.35 0.00 38.32 3.36
2729 3740 2.771089 TGAGCTCTTTAGTTGTGCAGG 58.229 47.619 16.19 0.00 0.00 4.85
2925 4325 2.213499 GGGATGCATTCTGTTACTCCG 58.787 52.381 4.63 0.00 0.00 4.63
3022 5635 4.708177 AGCTGCTTCAGTAGAAAGTTGAA 58.292 39.130 0.00 0.00 33.43 2.69
3026 5639 4.873746 TGTAGCTGCTTCAGTAGAAAGT 57.126 40.909 7.79 0.00 33.43 2.66
3032 5645 5.163509 CCATAGAGTTGTAGCTGCTTCAGTA 60.164 44.000 7.79 0.32 33.43 2.74
3135 6216 2.157989 AGTTCCTTTCCTACACCCCTCT 60.158 50.000 0.00 0.00 0.00 3.69
3136 6217 2.027100 CAGTTCCTTTCCTACACCCCTC 60.027 54.545 0.00 0.00 0.00 4.30
3137 6218 1.985895 CAGTTCCTTTCCTACACCCCT 59.014 52.381 0.00 0.00 0.00 4.79
3138 6219 1.982958 TCAGTTCCTTTCCTACACCCC 59.017 52.381 0.00 0.00 0.00 4.95
3177 6258 2.600729 CAGAACTGGCCCCAGCTCT 61.601 63.158 13.16 13.16 46.62 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.