Multiple sequence alignment - TraesCS5D01G096100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G096100 chr5D 100.000 2357 0 0 1 2357 106518067 106520423 0.000000e+00 4353.0
1 TraesCS5D01G096100 chr5D 91.898 469 31 7 1 466 265959140 265959604 0.000000e+00 649.0
2 TraesCS5D01G096100 chr5D 86.000 100 14 0 2102 2201 502596582 502596483 8.910000e-20 108.0
3 TraesCS5D01G096100 chr5B 93.612 1628 47 12 769 2357 115420645 115419036 0.000000e+00 2377.0
4 TraesCS5D01G096100 chr5B 92.899 169 9 1 606 771 115421087 115420919 2.340000e-60 243.0
5 TraesCS5D01G096100 chr5B 87.000 100 13 0 2102 2201 626338335 626338236 1.910000e-21 113.0
6 TraesCS5D01G096100 chr5B 87.000 100 13 0 2102 2201 631464757 631464658 1.910000e-21 113.0
7 TraesCS5D01G096100 chr5A 92.059 1083 46 16 472 1531 109968597 109967532 0.000000e+00 1487.0
8 TraesCS5D01G096100 chr5A 97.674 774 13 2 1584 2357 109967441 109966673 0.000000e+00 1325.0
9 TraesCS5D01G096100 chr5A 86.000 100 14 0 2102 2201 631330500 631330401 8.910000e-20 108.0
10 TraesCS5D01G096100 chr3D 92.537 469 28 7 1 466 58425360 58425824 0.000000e+00 665.0
11 TraesCS5D01G096100 chr3D 91.597 476 33 7 1 473 501418856 501418385 0.000000e+00 651.0
12 TraesCS5D01G096100 chr3D 82.456 114 16 4 2081 2191 48365616 48365728 1.930000e-16 97.1
13 TraesCS5D01G096100 chr7D 91.224 490 33 10 1 486 115061202 115061685 0.000000e+00 658.0
14 TraesCS5D01G096100 chr7D 91.949 472 29 7 1 468 64462334 64462800 0.000000e+00 652.0
15 TraesCS5D01G096100 chr7D 90.830 229 20 1 992 1219 86827818 86827590 2.940000e-79 305.0
16 TraesCS5D01G096100 chr2D 92.077 467 34 3 1 466 635113324 635112860 0.000000e+00 654.0
17 TraesCS5D01G096100 chr2D 91.915 470 31 7 1 467 437667058 437666593 0.000000e+00 651.0
18 TraesCS5D01G096100 chr2D 90.393 229 21 1 992 1219 203135639 203135411 1.370000e-77 300.0
19 TraesCS5D01G096100 chr1D 92.111 469 30 7 1 466 363512017 363511553 0.000000e+00 654.0
20 TraesCS5D01G096100 chr6D 91.720 471 35 4 1 469 436524002 436523534 0.000000e+00 651.0
21 TraesCS5D01G096100 chr6A 78.824 510 92 10 1854 2357 423533242 423533741 1.750000e-86 329.0
22 TraesCS5D01G096100 chr3B 89.224 232 24 1 989 1219 615471715 615471946 2.960000e-74 289.0
23 TraesCS5D01G096100 chr4B 87.931 232 27 1 989 1219 445051469 445051700 2.980000e-69 272.0
24 TraesCS5D01G096100 chr4D 88.043 92 6 4 2103 2192 84545695 84545783 1.150000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G096100 chr5D 106518067 106520423 2356 False 4353 4353 100.0000 1 2357 1 chr5D.!!$F1 2356
1 TraesCS5D01G096100 chr5B 115419036 115421087 2051 True 1310 2377 93.2555 606 2357 2 chr5B.!!$R3 1751
2 TraesCS5D01G096100 chr5A 109966673 109968597 1924 True 1406 1487 94.8665 472 2357 2 chr5A.!!$R2 1885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.109723 TCCCACTGGGTTTTTCGGAG 59.89 55.0 14.25 0.0 44.74 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1865 1.136891 TGGACTGTGTGCATATCTCCG 59.863 52.381 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.561738 GATTGTACTATTTTTCCCTTGAGTGA 57.438 34.615 0.00 0.00 0.00 3.41
26 27 7.979444 TTGTACTATTTTTCCCTTGAGTGAG 57.021 36.000 0.00 0.00 0.00 3.51
27 28 7.074653 TGTACTATTTTTCCCTTGAGTGAGT 57.925 36.000 0.00 0.00 0.00 3.41
28 29 7.514721 TGTACTATTTTTCCCTTGAGTGAGTT 58.485 34.615 0.00 0.00 0.00 3.01
29 30 7.996644 TGTACTATTTTTCCCTTGAGTGAGTTT 59.003 33.333 0.00 0.00 0.00 2.66
30 31 7.898014 ACTATTTTTCCCTTGAGTGAGTTTT 57.102 32.000 0.00 0.00 0.00 2.43
31 32 7.941919 ACTATTTTTCCCTTGAGTGAGTTTTC 58.058 34.615 0.00 0.00 0.00 2.29
32 33 5.592104 TTTTTCCCTTGAGTGAGTTTTCC 57.408 39.130 0.00 0.00 0.00 3.13
33 34 4.519906 TTTCCCTTGAGTGAGTTTTCCT 57.480 40.909 0.00 0.00 0.00 3.36
34 35 3.492102 TCCCTTGAGTGAGTTTTCCTG 57.508 47.619 0.00 0.00 0.00 3.86
35 36 3.045634 TCCCTTGAGTGAGTTTTCCTGA 58.954 45.455 0.00 0.00 0.00 3.86
36 37 3.652869 TCCCTTGAGTGAGTTTTCCTGAT 59.347 43.478 0.00 0.00 0.00 2.90
37 38 3.755378 CCCTTGAGTGAGTTTTCCTGATG 59.245 47.826 0.00 0.00 0.00 3.07
38 39 4.392940 CCTTGAGTGAGTTTTCCTGATGT 58.607 43.478 0.00 0.00 0.00 3.06
39 40 4.823989 CCTTGAGTGAGTTTTCCTGATGTT 59.176 41.667 0.00 0.00 0.00 2.71
40 41 5.300286 CCTTGAGTGAGTTTTCCTGATGTTT 59.700 40.000 0.00 0.00 0.00 2.83
41 42 6.377327 TTGAGTGAGTTTTCCTGATGTTTC 57.623 37.500 0.00 0.00 0.00 2.78
42 43 5.684704 TGAGTGAGTTTTCCTGATGTTTCT 58.315 37.500 0.00 0.00 0.00 2.52
43 44 5.760253 TGAGTGAGTTTTCCTGATGTTTCTC 59.240 40.000 0.00 0.00 0.00 2.87
44 45 5.684704 AGTGAGTTTTCCTGATGTTTCTCA 58.315 37.500 0.00 0.00 0.00 3.27
45 46 5.529060 AGTGAGTTTTCCTGATGTTTCTCAC 59.471 40.000 12.18 12.18 45.84 3.51
46 47 5.296780 GTGAGTTTTCCTGATGTTTCTCACA 59.703 40.000 14.33 0.00 45.25 3.58
47 48 5.296780 TGAGTTTTCCTGATGTTTCTCACAC 59.703 40.000 0.00 0.00 38.61 3.82
48 49 4.273480 AGTTTTCCTGATGTTTCTCACACG 59.727 41.667 0.00 0.00 38.61 4.49
49 50 3.744238 TTCCTGATGTTTCTCACACGA 57.256 42.857 0.00 0.00 38.61 4.35
50 51 3.303881 TCCTGATGTTTCTCACACGAG 57.696 47.619 0.00 0.00 38.61 4.18
51 52 2.029020 TCCTGATGTTTCTCACACGAGG 60.029 50.000 0.00 0.00 38.61 4.63
52 53 2.289072 CCTGATGTTTCTCACACGAGGT 60.289 50.000 0.00 0.00 38.61 3.85
53 54 3.393800 CTGATGTTTCTCACACGAGGTT 58.606 45.455 0.00 0.00 38.61 3.50
54 55 3.804036 TGATGTTTCTCACACGAGGTTT 58.196 40.909 0.00 0.00 38.61 3.27
55 56 4.196193 TGATGTTTCTCACACGAGGTTTT 58.804 39.130 0.00 0.00 38.61 2.43
56 57 4.638421 TGATGTTTCTCACACGAGGTTTTT 59.362 37.500 0.00 0.00 38.61 1.94
57 58 4.349663 TGTTTCTCACACGAGGTTTTTG 57.650 40.909 0.00 0.00 39.95 2.44
58 59 4.004314 TGTTTCTCACACGAGGTTTTTGA 58.996 39.130 0.00 0.00 39.95 2.69
59 60 4.142773 TGTTTCTCACACGAGGTTTTTGAC 60.143 41.667 0.00 0.00 39.95 3.18
60 61 2.198406 TCTCACACGAGGTTTTTGACG 58.802 47.619 0.00 0.00 39.95 4.35
61 62 2.159212 TCTCACACGAGGTTTTTGACGA 60.159 45.455 0.00 0.00 39.95 4.20
62 63 2.198406 TCACACGAGGTTTTTGACGAG 58.802 47.619 0.00 0.00 0.00 4.18
63 64 1.260561 CACACGAGGTTTTTGACGAGG 59.739 52.381 0.00 0.00 0.00 4.63
64 65 0.234884 CACGAGGTTTTTGACGAGGC 59.765 55.000 0.00 0.00 0.00 4.70
65 66 0.179067 ACGAGGTTTTTGACGAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
66 67 0.941542 CGAGGTTTTTGACGAGGCAA 59.058 50.000 0.00 0.00 0.00 4.52
67 68 1.535462 CGAGGTTTTTGACGAGGCAAT 59.465 47.619 0.00 0.00 0.00 3.56
68 69 2.031157 CGAGGTTTTTGACGAGGCAATT 60.031 45.455 0.00 0.00 0.00 2.32
69 70 3.565516 GAGGTTTTTGACGAGGCAATTC 58.434 45.455 0.00 0.00 0.00 2.17
70 71 2.031157 AGGTTTTTGACGAGGCAATTCG 60.031 45.455 0.00 3.39 45.70 3.34
85 86 4.529506 CAATTCGTGCAATACAACAACG 57.470 40.909 0.00 0.00 0.00 4.10
86 87 3.889196 ATTCGTGCAATACAACAACGT 57.111 38.095 0.00 0.00 0.00 3.99
87 88 4.994220 ATTCGTGCAATACAACAACGTA 57.006 36.364 0.00 0.00 0.00 3.57
88 89 4.994220 TTCGTGCAATACAACAACGTAT 57.006 36.364 0.00 0.00 33.43 3.06
89 90 6.650239 ATTCGTGCAATACAACAACGTATA 57.350 33.333 0.00 0.00 31.76 1.47
90 91 5.438821 TCGTGCAATACAACAACGTATAC 57.561 39.130 0.00 0.00 31.76 1.47
91 92 5.162794 TCGTGCAATACAACAACGTATACT 58.837 37.500 0.56 0.00 31.76 2.12
92 93 5.061187 TCGTGCAATACAACAACGTATACTG 59.939 40.000 0.56 0.00 31.76 2.74
93 94 5.164031 CGTGCAATACAACAACGTATACTGT 60.164 40.000 0.56 0.81 31.76 3.55
94 95 6.013085 GTGCAATACAACAACGTATACTGTG 58.987 40.000 0.56 1.46 31.76 3.66
95 96 5.697178 TGCAATACAACAACGTATACTGTGT 59.303 36.000 0.56 2.10 31.76 3.72
96 97 6.013085 GCAATACAACAACGTATACTGTGTG 58.987 40.000 8.55 6.33 31.76 3.82
97 98 5.773239 ATACAACAACGTATACTGTGTGC 57.227 39.130 8.55 0.00 30.20 4.57
98 99 3.724374 ACAACAACGTATACTGTGTGCT 58.276 40.909 8.55 0.00 0.00 4.40
99 100 3.739300 ACAACAACGTATACTGTGTGCTC 59.261 43.478 8.55 0.00 0.00 4.26
100 101 3.936372 ACAACGTATACTGTGTGCTCT 57.064 42.857 7.33 0.00 0.00 4.09
101 102 4.252971 ACAACGTATACTGTGTGCTCTT 57.747 40.909 7.33 0.00 0.00 2.85
102 103 4.628074 ACAACGTATACTGTGTGCTCTTT 58.372 39.130 7.33 0.00 0.00 2.52
103 104 5.054477 ACAACGTATACTGTGTGCTCTTTT 58.946 37.500 7.33 0.00 0.00 2.27
104 105 5.526111 ACAACGTATACTGTGTGCTCTTTTT 59.474 36.000 7.33 0.00 0.00 1.94
105 106 5.840940 ACGTATACTGTGTGCTCTTTTTC 57.159 39.130 0.56 0.00 0.00 2.29
106 107 4.689345 ACGTATACTGTGTGCTCTTTTTCC 59.311 41.667 0.56 0.00 0.00 3.13
107 108 4.688879 CGTATACTGTGTGCTCTTTTTCCA 59.311 41.667 0.56 0.00 0.00 3.53
108 109 5.351465 CGTATACTGTGTGCTCTTTTTCCAT 59.649 40.000 0.56 0.00 0.00 3.41
109 110 6.533723 CGTATACTGTGTGCTCTTTTTCCATA 59.466 38.462 0.56 0.00 0.00 2.74
110 111 7.224753 CGTATACTGTGTGCTCTTTTTCCATAT 59.775 37.037 0.56 0.00 0.00 1.78
111 112 7.944729 ATACTGTGTGCTCTTTTTCCATATT 57.055 32.000 0.00 0.00 0.00 1.28
112 113 6.655078 ACTGTGTGCTCTTTTTCCATATTT 57.345 33.333 0.00 0.00 0.00 1.40
113 114 7.054491 ACTGTGTGCTCTTTTTCCATATTTT 57.946 32.000 0.00 0.00 0.00 1.82
114 115 7.500141 ACTGTGTGCTCTTTTTCCATATTTTT 58.500 30.769 0.00 0.00 0.00 1.94
131 132 3.528597 TTTTTCCCACTGGGTTTTTCG 57.471 42.857 14.25 0.00 44.74 3.46
132 133 1.404843 TTTCCCACTGGGTTTTTCGG 58.595 50.000 14.25 0.00 44.74 4.30
133 134 0.551879 TTCCCACTGGGTTTTTCGGA 59.448 50.000 14.25 0.00 44.74 4.55
134 135 0.109723 TCCCACTGGGTTTTTCGGAG 59.890 55.000 14.25 0.00 44.74 4.63
135 136 0.179001 CCCACTGGGTTTTTCGGAGT 60.179 55.000 5.85 0.00 38.25 3.85
136 137 1.687563 CCACTGGGTTTTTCGGAGTT 58.312 50.000 0.00 0.00 0.00 3.01
137 138 2.028876 CCACTGGGTTTTTCGGAGTTT 58.971 47.619 0.00 0.00 0.00 2.66
138 139 2.034179 CCACTGGGTTTTTCGGAGTTTC 59.966 50.000 0.00 0.00 0.00 2.78
139 140 1.944709 ACTGGGTTTTTCGGAGTTTCG 59.055 47.619 0.00 0.00 0.00 3.46
140 141 2.215196 CTGGGTTTTTCGGAGTTTCGA 58.785 47.619 0.00 0.00 37.38 3.71
141 142 2.215196 TGGGTTTTTCGGAGTTTCGAG 58.785 47.619 0.00 0.00 40.42 4.04
142 143 1.534163 GGGTTTTTCGGAGTTTCGAGG 59.466 52.381 0.00 0.00 40.42 4.63
143 144 1.069432 GGTTTTTCGGAGTTTCGAGGC 60.069 52.381 0.00 0.00 40.42 4.70
144 145 1.600485 GTTTTTCGGAGTTTCGAGGCA 59.400 47.619 0.00 0.00 40.42 4.75
145 146 2.178912 TTTTCGGAGTTTCGAGGCAT 57.821 45.000 0.00 0.00 40.42 4.40
146 147 1.438651 TTTCGGAGTTTCGAGGCATG 58.561 50.000 0.00 0.00 40.42 4.06
147 148 0.391130 TTCGGAGTTTCGAGGCATGG 60.391 55.000 0.00 0.00 40.42 3.66
148 149 1.218047 CGGAGTTTCGAGGCATGGA 59.782 57.895 0.00 0.00 0.00 3.41
149 150 0.179073 CGGAGTTTCGAGGCATGGAT 60.179 55.000 0.00 0.00 0.00 3.41
150 151 1.068588 CGGAGTTTCGAGGCATGGATA 59.931 52.381 0.00 0.00 0.00 2.59
151 152 2.289072 CGGAGTTTCGAGGCATGGATAT 60.289 50.000 0.00 0.00 0.00 1.63
152 153 3.056821 CGGAGTTTCGAGGCATGGATATA 60.057 47.826 0.00 0.00 0.00 0.86
153 154 4.246458 GGAGTTTCGAGGCATGGATATAC 58.754 47.826 0.00 0.00 0.00 1.47
154 155 3.914312 AGTTTCGAGGCATGGATATACG 58.086 45.455 0.00 0.00 0.00 3.06
155 156 2.993899 GTTTCGAGGCATGGATATACGG 59.006 50.000 0.00 0.00 0.00 4.02
156 157 2.209690 TCGAGGCATGGATATACGGA 57.790 50.000 0.00 0.00 0.00 4.69
157 158 2.735151 TCGAGGCATGGATATACGGAT 58.265 47.619 0.00 0.00 0.00 4.18
158 159 3.893521 TCGAGGCATGGATATACGGATA 58.106 45.455 0.00 0.00 0.00 2.59
159 160 4.274978 TCGAGGCATGGATATACGGATAA 58.725 43.478 0.00 0.00 0.00 1.75
160 161 4.893524 TCGAGGCATGGATATACGGATAAT 59.106 41.667 0.00 0.00 0.00 1.28
161 162 5.362717 TCGAGGCATGGATATACGGATAATT 59.637 40.000 0.00 0.00 0.00 1.40
162 163 6.548251 TCGAGGCATGGATATACGGATAATTA 59.452 38.462 0.00 0.00 0.00 1.40
163 164 6.641314 CGAGGCATGGATATACGGATAATTAC 59.359 42.308 0.00 0.00 0.00 1.89
164 165 6.827727 AGGCATGGATATACGGATAATTACC 58.172 40.000 0.00 0.00 0.00 2.85
165 166 5.995897 GGCATGGATATACGGATAATTACCC 59.004 44.000 0.00 0.00 0.00 3.69
166 167 6.408776 GGCATGGATATACGGATAATTACCCA 60.409 42.308 0.00 0.00 0.00 4.51
167 168 7.051623 GCATGGATATACGGATAATTACCCAA 58.948 38.462 0.00 0.00 0.00 4.12
168 169 7.226720 GCATGGATATACGGATAATTACCCAAG 59.773 40.741 0.00 0.00 0.00 3.61
169 170 7.190335 TGGATATACGGATAATTACCCAAGG 57.810 40.000 0.00 0.00 0.00 3.61
170 171 6.157297 TGGATATACGGATAATTACCCAAGGG 59.843 42.308 2.91 2.91 42.03 3.95
181 182 2.440599 CCAAGGGGGAGTGTTGGG 59.559 66.667 0.00 0.00 40.01 4.12
182 183 2.160171 CCAAGGGGGAGTGTTGGGA 61.160 63.158 0.00 0.00 40.01 4.37
183 184 1.725169 CCAAGGGGGAGTGTTGGGAA 61.725 60.000 0.00 0.00 40.01 3.97
184 185 0.187361 CAAGGGGGAGTGTTGGGAAA 59.813 55.000 0.00 0.00 0.00 3.13
185 186 0.187606 AAGGGGGAGTGTTGGGAAAC 59.812 55.000 0.00 0.00 0.00 2.78
186 187 0.701310 AGGGGGAGTGTTGGGAAACT 60.701 55.000 0.00 0.00 0.00 2.66
187 188 0.539669 GGGGGAGTGTTGGGAAACTG 60.540 60.000 0.00 0.00 0.00 3.16
188 189 0.539669 GGGGAGTGTTGGGAAACTGG 60.540 60.000 0.00 0.00 0.00 4.00
189 190 0.539669 GGGAGTGTTGGGAAACTGGG 60.540 60.000 0.00 0.00 0.00 4.45
190 191 1.179174 GGAGTGTTGGGAAACTGGGC 61.179 60.000 0.00 0.00 0.00 5.36
191 192 1.152546 AGTGTTGGGAAACTGGGCC 60.153 57.895 0.00 0.00 0.00 5.80
192 193 2.200092 TGTTGGGAAACTGGGCCC 59.800 61.111 17.59 17.59 44.93 5.80
193 194 2.603473 GTTGGGAAACTGGGCCCC 60.603 66.667 22.27 2.04 44.03 5.80
194 195 3.922364 TTGGGAAACTGGGCCCCC 61.922 66.667 22.27 13.02 44.03 5.40
195 196 4.959460 TGGGAAACTGGGCCCCCT 62.959 66.667 22.27 0.00 44.03 4.79
196 197 4.062032 GGGAAACTGGGCCCCCTC 62.062 72.222 22.27 10.19 38.45 4.30
197 198 4.426313 GGAAACTGGGCCCCCTCG 62.426 72.222 22.27 7.69 36.94 4.63
198 199 3.327404 GAAACTGGGCCCCCTCGA 61.327 66.667 22.27 0.00 36.94 4.04
199 200 3.330720 AAACTGGGCCCCCTCGAG 61.331 66.667 22.27 12.48 36.94 4.04
237 238 2.355956 GTATCGCACGGGCTAGCC 60.356 66.667 26.55 26.55 38.10 3.93
247 248 3.408853 GGCTAGCCCCTCCCGTTT 61.409 66.667 24.19 0.00 0.00 3.60
248 249 2.189784 GCTAGCCCCTCCCGTTTC 59.810 66.667 2.29 0.00 0.00 2.78
249 250 2.908796 CTAGCCCCTCCCGTTTCC 59.091 66.667 0.00 0.00 0.00 3.13
250 251 1.993391 CTAGCCCCTCCCGTTTCCA 60.993 63.158 0.00 0.00 0.00 3.53
251 252 2.253403 CTAGCCCCTCCCGTTTCCAC 62.253 65.000 0.00 0.00 0.00 4.02
252 253 3.961414 GCCCCTCCCGTTTCCACA 61.961 66.667 0.00 0.00 0.00 4.17
253 254 2.033602 CCCCTCCCGTTTCCACAC 59.966 66.667 0.00 0.00 0.00 3.82
254 255 2.526046 CCCCTCCCGTTTCCACACT 61.526 63.158 0.00 0.00 0.00 3.55
255 256 1.454539 CCCTCCCGTTTCCACACTT 59.545 57.895 0.00 0.00 0.00 3.16
256 257 0.179001 CCCTCCCGTTTCCACACTTT 60.179 55.000 0.00 0.00 0.00 2.66
257 258 1.072648 CCCTCCCGTTTCCACACTTTA 59.927 52.381 0.00 0.00 0.00 1.85
258 259 2.148768 CCTCCCGTTTCCACACTTTAC 58.851 52.381 0.00 0.00 0.00 2.01
259 260 1.796459 CTCCCGTTTCCACACTTTACG 59.204 52.381 0.00 0.00 0.00 3.18
260 261 1.138661 TCCCGTTTCCACACTTTACGT 59.861 47.619 0.00 0.00 0.00 3.57
261 262 1.941975 CCCGTTTCCACACTTTACGTT 59.058 47.619 0.00 0.00 0.00 3.99
262 263 3.129871 CCCGTTTCCACACTTTACGTTA 58.870 45.455 0.00 0.00 0.00 3.18
263 264 3.559242 CCCGTTTCCACACTTTACGTTAA 59.441 43.478 0.00 0.00 0.00 2.01
264 265 4.318974 CCCGTTTCCACACTTTACGTTAAG 60.319 45.833 12.50 12.50 0.00 1.85
265 266 4.270808 CCGTTTCCACACTTTACGTTAAGT 59.729 41.667 13.87 13.87 38.87 2.24
277 278 7.323420 ACTTTACGTTAAGTGGGTACTTATCC 58.677 38.462 18.37 0.00 45.93 2.59
278 279 4.743057 ACGTTAAGTGGGTACTTATCCC 57.257 45.455 1.21 0.00 45.93 3.85
279 280 4.356436 ACGTTAAGTGGGTACTTATCCCT 58.644 43.478 2.65 0.00 45.93 4.20
280 281 4.779489 ACGTTAAGTGGGTACTTATCCCTT 59.221 41.667 2.65 0.00 45.93 3.95
281 282 5.114081 CGTTAAGTGGGTACTTATCCCTTG 58.886 45.833 2.65 0.00 45.93 3.61
282 283 5.105228 CGTTAAGTGGGTACTTATCCCTTGA 60.105 44.000 2.65 0.00 45.93 3.02
283 284 4.838904 AAGTGGGTACTTATCCCTTGAC 57.161 45.455 2.65 0.00 45.07 3.18
284 285 3.113043 AGTGGGTACTTATCCCTTGACC 58.887 50.000 2.65 0.00 44.84 4.02
285 286 2.172082 GTGGGTACTTATCCCTTGACCC 59.828 54.545 0.75 0.75 45.75 4.46
286 287 2.046729 TGGGTACTTATCCCTTGACCCT 59.953 50.000 9.22 0.00 45.74 4.34
287 288 3.120898 GGGTACTTATCCCTTGACCCTT 58.879 50.000 0.50 0.00 42.80 3.95
288 289 3.526430 GGGTACTTATCCCTTGACCCTTT 59.474 47.826 0.50 0.00 42.80 3.11
289 290 4.723285 GGGTACTTATCCCTTGACCCTTTA 59.277 45.833 0.50 0.00 42.80 1.85
290 291 5.397221 GGGTACTTATCCCTTGACCCTTTAC 60.397 48.000 0.50 0.00 42.80 2.01
291 292 4.857130 ACTTATCCCTTGACCCTTTACC 57.143 45.455 0.00 0.00 0.00 2.85
292 293 3.526430 ACTTATCCCTTGACCCTTTACCC 59.474 47.826 0.00 0.00 0.00 3.69
293 294 1.305886 ATCCCTTGACCCTTTACCCC 58.694 55.000 0.00 0.00 0.00 4.95
294 295 0.197661 TCCCTTGACCCTTTACCCCT 59.802 55.000 0.00 0.00 0.00 4.79
295 296 1.441956 TCCCTTGACCCTTTACCCCTA 59.558 52.381 0.00 0.00 0.00 3.53
296 297 2.048150 TCCCTTGACCCTTTACCCCTAT 59.952 50.000 0.00 0.00 0.00 2.57
297 298 3.278208 TCCCTTGACCCTTTACCCCTATA 59.722 47.826 0.00 0.00 0.00 1.31
298 299 4.077026 TCCCTTGACCCTTTACCCCTATAT 60.077 45.833 0.00 0.00 0.00 0.86
299 300 5.140049 TCCCTTGACCCTTTACCCCTATATA 59.860 44.000 0.00 0.00 0.00 0.86
300 301 5.853364 CCCTTGACCCTTTACCCCTATATAA 59.147 44.000 0.00 0.00 0.00 0.98
301 302 6.333435 CCCTTGACCCTTTACCCCTATATAAA 59.667 42.308 0.00 0.00 0.00 1.40
302 303 7.459234 CCTTGACCCTTTACCCCTATATAAAG 58.541 42.308 0.00 0.00 37.89 1.85
303 304 7.294008 CCTTGACCCTTTACCCCTATATAAAGA 59.706 40.741 5.52 0.00 39.68 2.52
304 305 7.867160 TGACCCTTTACCCCTATATAAAGAG 57.133 40.000 5.52 0.00 39.68 2.85
305 306 7.607511 TGACCCTTTACCCCTATATAAAGAGA 58.392 38.462 5.52 0.00 39.68 3.10
306 307 7.511714 TGACCCTTTACCCCTATATAAAGAGAC 59.488 40.741 5.52 0.00 39.68 3.36
307 308 6.496218 ACCCTTTACCCCTATATAAAGAGACG 59.504 42.308 5.52 0.00 39.68 4.18
308 309 6.723052 CCCTTTACCCCTATATAAAGAGACGA 59.277 42.308 5.52 0.00 39.68 4.20
309 310 7.399478 CCCTTTACCCCTATATAAAGAGACGAT 59.601 40.741 5.52 0.00 39.68 3.73
310 311 8.251721 CCTTTACCCCTATATAAAGAGACGATG 58.748 40.741 5.52 0.00 39.68 3.84
311 312 8.945195 TTTACCCCTATATAAAGAGACGATGA 57.055 34.615 0.00 0.00 0.00 2.92
312 313 8.577048 TTACCCCTATATAAAGAGACGATGAG 57.423 38.462 0.00 0.00 0.00 2.90
313 314 5.419471 ACCCCTATATAAAGAGACGATGAGC 59.581 44.000 0.00 0.00 0.00 4.26
314 315 5.419155 CCCCTATATAAAGAGACGATGAGCA 59.581 44.000 0.00 0.00 0.00 4.26
315 316 6.071334 CCCCTATATAAAGAGACGATGAGCAA 60.071 42.308 0.00 0.00 0.00 3.91
316 317 7.364232 CCCCTATATAAAGAGACGATGAGCAAT 60.364 40.741 0.00 0.00 0.00 3.56
317 318 7.704472 CCCTATATAAAGAGACGATGAGCAATC 59.296 40.741 0.00 0.00 0.00 2.67
318 319 8.246871 CCTATATAAAGAGACGATGAGCAATCA 58.753 37.037 0.00 0.00 34.68 2.57
319 320 9.800433 CTATATAAAGAGACGATGAGCAATCAT 57.200 33.333 0.00 0.00 34.68 2.45
321 322 5.481200 AAAGAGACGATGAGCAATCATTG 57.519 39.130 0.00 0.00 37.49 2.82
322 323 4.134379 AGAGACGATGAGCAATCATTGT 57.866 40.909 10.22 10.22 44.82 2.71
323 324 5.268118 AGAGACGATGAGCAATCATTGTA 57.732 39.130 10.38 0.00 42.87 2.41
324 325 5.664457 AGAGACGATGAGCAATCATTGTAA 58.336 37.500 10.38 0.00 42.87 2.41
325 326 5.521735 AGAGACGATGAGCAATCATTGTAAC 59.478 40.000 10.38 8.13 42.87 2.50
326 327 4.572389 AGACGATGAGCAATCATTGTAACC 59.428 41.667 10.38 0.88 42.87 2.85
327 328 3.627577 ACGATGAGCAATCATTGTAACCC 59.372 43.478 8.96 0.00 41.51 4.11
328 329 3.003689 CGATGAGCAATCATTGTAACCCC 59.996 47.826 0.00 0.00 34.68 4.95
329 330 3.737559 TGAGCAATCATTGTAACCCCT 57.262 42.857 0.00 0.00 0.00 4.79
330 331 3.355378 TGAGCAATCATTGTAACCCCTG 58.645 45.455 0.00 0.00 0.00 4.45
331 332 3.010027 TGAGCAATCATTGTAACCCCTGA 59.990 43.478 0.00 0.00 0.00 3.86
332 333 4.210331 GAGCAATCATTGTAACCCCTGAT 58.790 43.478 0.00 0.00 0.00 2.90
333 334 4.210331 AGCAATCATTGTAACCCCTGATC 58.790 43.478 0.00 0.00 0.00 2.92
334 335 3.953612 GCAATCATTGTAACCCCTGATCA 59.046 43.478 0.00 0.00 0.00 2.92
335 336 4.586001 GCAATCATTGTAACCCCTGATCAT 59.414 41.667 0.00 0.00 0.00 2.45
336 337 5.069516 GCAATCATTGTAACCCCTGATCATT 59.930 40.000 0.00 0.00 0.00 2.57
337 338 6.509656 CAATCATTGTAACCCCTGATCATTG 58.490 40.000 0.00 0.00 0.00 2.82
338 339 5.449297 TCATTGTAACCCCTGATCATTGA 57.551 39.130 0.00 0.00 0.00 2.57
339 340 6.017211 TCATTGTAACCCCTGATCATTGAT 57.983 37.500 0.00 0.00 0.00 2.57
340 341 6.434302 TCATTGTAACCCCTGATCATTGATT 58.566 36.000 0.00 0.00 0.00 2.57
341 342 7.581814 TCATTGTAACCCCTGATCATTGATTA 58.418 34.615 0.00 0.00 0.00 1.75
342 343 8.058235 TCATTGTAACCCCTGATCATTGATTAA 58.942 33.333 0.00 0.00 0.00 1.40
343 344 8.863086 CATTGTAACCCCTGATCATTGATTAAT 58.137 33.333 0.00 0.00 0.00 1.40
345 346 9.928618 TTGTAACCCCTGATCATTGATTAATAA 57.071 29.630 0.00 0.00 0.00 1.40
346 347 9.928618 TGTAACCCCTGATCATTGATTAATAAA 57.071 29.630 0.00 0.00 0.00 1.40
349 350 9.887862 AACCCCTGATCATTGATTAATAAAGAT 57.112 29.630 0.00 0.00 0.00 2.40
367 368 6.453926 AAAGATAGTCTCCTTCGTACTTCC 57.546 41.667 0.00 0.00 0.00 3.46
368 369 5.376756 AGATAGTCTCCTTCGTACTTCCT 57.623 43.478 0.00 0.00 0.00 3.36
369 370 5.757988 AGATAGTCTCCTTCGTACTTCCTT 58.242 41.667 0.00 0.00 0.00 3.36
370 371 5.591067 AGATAGTCTCCTTCGTACTTCCTTG 59.409 44.000 0.00 0.00 0.00 3.61
371 372 3.498334 AGTCTCCTTCGTACTTCCTTGT 58.502 45.455 0.00 0.00 0.00 3.16
372 373 3.256136 AGTCTCCTTCGTACTTCCTTGTG 59.744 47.826 0.00 0.00 0.00 3.33
373 374 3.005578 GTCTCCTTCGTACTTCCTTGTGT 59.994 47.826 0.00 0.00 0.00 3.72
374 375 3.640029 TCTCCTTCGTACTTCCTTGTGTT 59.360 43.478 0.00 0.00 0.00 3.32
375 376 3.986277 TCCTTCGTACTTCCTTGTGTTC 58.014 45.455 0.00 0.00 0.00 3.18
376 377 3.385433 TCCTTCGTACTTCCTTGTGTTCA 59.615 43.478 0.00 0.00 0.00 3.18
377 378 4.039973 TCCTTCGTACTTCCTTGTGTTCAT 59.960 41.667 0.00 0.00 0.00 2.57
378 379 4.389077 CCTTCGTACTTCCTTGTGTTCATC 59.611 45.833 0.00 0.00 0.00 2.92
379 380 4.866508 TCGTACTTCCTTGTGTTCATCT 57.133 40.909 0.00 0.00 0.00 2.90
380 381 5.970317 TCGTACTTCCTTGTGTTCATCTA 57.030 39.130 0.00 0.00 0.00 1.98
381 382 5.706916 TCGTACTTCCTTGTGTTCATCTAC 58.293 41.667 0.00 0.00 0.00 2.59
382 383 5.475909 TCGTACTTCCTTGTGTTCATCTACT 59.524 40.000 0.00 0.00 0.00 2.57
383 384 6.015688 TCGTACTTCCTTGTGTTCATCTACTT 60.016 38.462 0.00 0.00 0.00 2.24
384 385 6.645415 CGTACTTCCTTGTGTTCATCTACTTT 59.355 38.462 0.00 0.00 0.00 2.66
385 386 7.170998 CGTACTTCCTTGTGTTCATCTACTTTT 59.829 37.037 0.00 0.00 0.00 2.27
386 387 7.264373 ACTTCCTTGTGTTCATCTACTTTTG 57.736 36.000 0.00 0.00 0.00 2.44
387 388 5.689383 TCCTTGTGTTCATCTACTTTTGC 57.311 39.130 0.00 0.00 0.00 3.68
388 389 4.213270 TCCTTGTGTTCATCTACTTTTGCG 59.787 41.667 0.00 0.00 0.00 4.85
389 390 4.024048 CCTTGTGTTCATCTACTTTTGCGT 60.024 41.667 0.00 0.00 0.00 5.24
390 391 4.466567 TGTGTTCATCTACTTTTGCGTG 57.533 40.909 0.00 0.00 0.00 5.34
391 392 3.874543 TGTGTTCATCTACTTTTGCGTGT 59.125 39.130 0.00 0.00 0.00 4.49
392 393 4.334203 TGTGTTCATCTACTTTTGCGTGTT 59.666 37.500 0.00 0.00 0.00 3.32
393 394 4.904154 GTGTTCATCTACTTTTGCGTGTTC 59.096 41.667 0.00 0.00 0.00 3.18
394 395 4.141680 GTTCATCTACTTTTGCGTGTTCG 58.858 43.478 0.00 0.00 40.37 3.95
395 396 3.644823 TCATCTACTTTTGCGTGTTCGA 58.355 40.909 0.00 0.00 39.71 3.71
396 397 3.427528 TCATCTACTTTTGCGTGTTCGAC 59.572 43.478 0.00 0.00 39.71 4.20
397 398 3.088194 TCTACTTTTGCGTGTTCGACT 57.912 42.857 0.00 0.00 39.71 4.18
398 399 4.227512 TCTACTTTTGCGTGTTCGACTA 57.772 40.909 0.00 0.00 39.71 2.59
399 400 3.976942 TCTACTTTTGCGTGTTCGACTAC 59.023 43.478 0.00 0.00 39.71 2.73
400 401 2.817901 ACTTTTGCGTGTTCGACTACT 58.182 42.857 0.00 0.00 39.71 2.57
401 402 3.192466 ACTTTTGCGTGTTCGACTACTT 58.808 40.909 0.00 0.00 39.71 2.24
402 403 3.244579 ACTTTTGCGTGTTCGACTACTTC 59.755 43.478 0.00 0.00 39.71 3.01
422 423 0.294887 GTCTACGACGCTTGCATTCG 59.705 55.000 10.73 10.73 38.73 3.34
423 424 1.013323 CTACGACGCTTGCATTCGC 60.013 57.895 11.83 1.10 36.18 4.70
424 425 1.413767 CTACGACGCTTGCATTCGCT 61.414 55.000 11.83 4.64 39.64 4.93
425 426 1.410737 TACGACGCTTGCATTCGCTC 61.411 55.000 11.83 4.94 39.64 5.03
426 427 2.401195 GACGCTTGCATTCGCTCC 59.599 61.111 7.86 0.00 39.64 4.70
427 428 3.425938 GACGCTTGCATTCGCTCCG 62.426 63.158 7.86 0.00 39.64 4.63
428 429 4.876081 CGCTTGCATTCGCTCCGC 62.876 66.667 0.00 0.00 39.64 5.54
429 430 3.803082 GCTTGCATTCGCTCCGCA 61.803 61.111 0.00 0.00 39.64 5.69
430 431 2.869646 CTTGCATTCGCTCCGCAA 59.130 55.556 0.00 0.00 43.02 4.85
431 432 1.512734 CTTGCATTCGCTCCGCAAC 60.513 57.895 0.00 0.00 40.54 4.17
432 433 2.855728 CTTGCATTCGCTCCGCAACC 62.856 60.000 0.00 0.00 40.54 3.77
433 434 3.127533 GCATTCGCTCCGCAACCT 61.128 61.111 0.00 0.00 34.30 3.50
434 435 2.690778 GCATTCGCTCCGCAACCTT 61.691 57.895 0.00 0.00 34.30 3.50
435 436 1.135315 CATTCGCTCCGCAACCTTG 59.865 57.895 0.00 0.00 0.00 3.61
436 437 2.040544 ATTCGCTCCGCAACCTTGG 61.041 57.895 0.00 0.00 0.00 3.61
437 438 2.463589 ATTCGCTCCGCAACCTTGGA 62.464 55.000 0.00 0.00 0.00 3.53
438 439 3.423154 CGCTCCGCAACCTTGGAC 61.423 66.667 0.00 0.00 0.00 4.02
439 440 3.056328 GCTCCGCAACCTTGGACC 61.056 66.667 0.00 0.00 0.00 4.46
440 441 2.742372 CTCCGCAACCTTGGACCG 60.742 66.667 0.00 0.00 0.00 4.79
441 442 4.323477 TCCGCAACCTTGGACCGG 62.323 66.667 0.00 0.00 40.25 5.28
442 443 4.323477 CCGCAACCTTGGACCGGA 62.323 66.667 9.46 0.00 41.34 5.14
443 444 3.047877 CGCAACCTTGGACCGGAC 61.048 66.667 9.46 0.00 0.00 4.79
444 445 2.430367 GCAACCTTGGACCGGACT 59.570 61.111 9.46 0.00 0.00 3.85
445 446 1.671379 GCAACCTTGGACCGGACTC 60.671 63.158 9.46 0.00 0.00 3.36
446 447 1.374252 CAACCTTGGACCGGACTCG 60.374 63.158 9.46 0.00 0.00 4.18
447 448 3.236003 AACCTTGGACCGGACTCGC 62.236 63.158 9.46 0.00 34.56 5.03
448 449 4.452733 CCTTGGACCGGACTCGCC 62.453 72.222 9.46 1.40 34.56 5.54
466 467 2.975799 GGCGGAGTTGCGGAACAA 60.976 61.111 22.29 0.00 34.17 2.83
467 468 2.548295 GGCGGAGTTGCGGAACAAA 61.548 57.895 22.29 0.00 40.82 2.83
468 469 1.082104 GCGGAGTTGCGGAACAAAG 60.082 57.895 22.29 12.49 40.82 2.77
469 470 1.503818 GCGGAGTTGCGGAACAAAGA 61.504 55.000 22.29 0.00 40.82 2.52
470 471 0.941542 CGGAGTTGCGGAACAAAGAA 59.058 50.000 22.29 0.00 40.82 2.52
485 486 3.578716 ACAAAGAAGATCAGAAGTCGGGA 59.421 43.478 0.00 0.00 0.00 5.14
503 504 1.338655 GGATGGACTTACGAGAGAGCC 59.661 57.143 0.00 0.00 0.00 4.70
509 510 2.921538 CTTACGAGAGAGCCGCCACG 62.922 65.000 0.00 0.00 0.00 4.94
578 591 2.010145 TCAACGCTCCACATCTTAGC 57.990 50.000 0.00 0.00 0.00 3.09
591 604 5.127519 CCACATCTTAGCCCATGATTTCAAA 59.872 40.000 0.00 0.00 0.00 2.69
635 649 2.846039 AACACGACACCTAGATAGCG 57.154 50.000 0.00 0.00 0.00 4.26
793 1086 3.503042 CCTCTCCATTCTATCTGCCCCTA 60.503 52.174 0.00 0.00 0.00 3.53
795 1088 2.569404 CTCCATTCTATCTGCCCCTACC 59.431 54.545 0.00 0.00 0.00 3.18
796 1089 2.182312 TCCATTCTATCTGCCCCTACCT 59.818 50.000 0.00 0.00 0.00 3.08
797 1090 2.569404 CCATTCTATCTGCCCCTACCTC 59.431 54.545 0.00 0.00 0.00 3.85
798 1091 2.400467 TTCTATCTGCCCCTACCTCC 57.600 55.000 0.00 0.00 0.00 4.30
799 1092 0.112606 TCTATCTGCCCCTACCTCCG 59.887 60.000 0.00 0.00 0.00 4.63
1374 1674 0.674895 AGTCGTCATTGGAGCAAGCC 60.675 55.000 0.00 0.00 0.00 4.35
1375 1675 1.377202 TCGTCATTGGAGCAAGCCC 60.377 57.895 0.00 0.00 0.00 5.19
1376 1676 2.753966 CGTCATTGGAGCAAGCCCG 61.754 63.158 0.00 0.00 0.00 6.13
1377 1677 1.675641 GTCATTGGAGCAAGCCCGT 60.676 57.895 0.00 0.00 0.00 5.28
1378 1678 1.675310 TCATTGGAGCAAGCCCGTG 60.675 57.895 0.00 0.00 0.00 4.94
1379 1679 1.973281 CATTGGAGCAAGCCCGTGT 60.973 57.895 0.00 0.00 0.00 4.49
1380 1680 1.973281 ATTGGAGCAAGCCCGTGTG 60.973 57.895 0.00 0.00 0.00 3.82
1381 1681 4.641645 TGGAGCAAGCCCGTGTGG 62.642 66.667 0.00 0.00 37.09 4.17
1460 1760 1.352156 CCCGGCTTCGTTTTCTCTCG 61.352 60.000 0.00 0.00 0.00 4.04
1564 1891 2.057137 ATGCACACAGTCCAGTTGTT 57.943 45.000 0.00 0.00 0.00 2.83
1671 2019 2.621338 ACCACGCAATGTACATCTCAG 58.379 47.619 9.23 4.12 0.00 3.35
1691 2039 1.605710 GTCAAACTGAGCAGTGCATGT 59.394 47.619 19.20 9.77 41.58 3.21
1727 2075 1.153168 AATCTCCAACCCCATCGCG 60.153 57.895 0.00 0.00 0.00 5.87
1763 2111 5.491982 CAGCAAATTAAGGAGTAGGTCTGT 58.508 41.667 0.00 0.00 0.00 3.41
1805 2153 4.568359 CACACATATCCACAACAGAGTAGC 59.432 45.833 0.00 0.00 0.00 3.58
1906 2254 2.688666 TCTCGCATGGAGGGCCTT 60.689 61.111 7.89 0.00 43.34 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.561738 TCACTCAAGGGAAAAATAGTACAATC 57.438 34.615 0.00 0.00 0.00 2.67
1 2 8.164070 ACTCACTCAAGGGAAAAATAGTACAAT 58.836 33.333 0.00 0.00 0.00 2.71
2 3 7.514721 ACTCACTCAAGGGAAAAATAGTACAA 58.485 34.615 0.00 0.00 0.00 2.41
3 4 7.074653 ACTCACTCAAGGGAAAAATAGTACA 57.925 36.000 0.00 0.00 0.00 2.90
4 5 7.981102 AACTCACTCAAGGGAAAAATAGTAC 57.019 36.000 0.00 0.00 0.00 2.73
5 6 8.990163 AAAACTCACTCAAGGGAAAAATAGTA 57.010 30.769 0.00 0.00 0.00 1.82
6 7 7.014326 GGAAAACTCACTCAAGGGAAAAATAGT 59.986 37.037 0.00 0.00 0.00 2.12
7 8 7.231519 AGGAAAACTCACTCAAGGGAAAAATAG 59.768 37.037 0.00 0.00 0.00 1.73
8 9 7.014230 CAGGAAAACTCACTCAAGGGAAAAATA 59.986 37.037 0.00 0.00 0.00 1.40
9 10 5.899547 AGGAAAACTCACTCAAGGGAAAAAT 59.100 36.000 0.00 0.00 0.00 1.82
10 11 5.127031 CAGGAAAACTCACTCAAGGGAAAAA 59.873 40.000 0.00 0.00 0.00 1.94
11 12 4.644685 CAGGAAAACTCACTCAAGGGAAAA 59.355 41.667 0.00 0.00 0.00 2.29
12 13 4.080015 TCAGGAAAACTCACTCAAGGGAAA 60.080 41.667 0.00 0.00 0.00 3.13
13 14 3.458118 TCAGGAAAACTCACTCAAGGGAA 59.542 43.478 0.00 0.00 0.00 3.97
14 15 3.045634 TCAGGAAAACTCACTCAAGGGA 58.954 45.455 0.00 0.00 0.00 4.20
15 16 3.492102 TCAGGAAAACTCACTCAAGGG 57.508 47.619 0.00 0.00 0.00 3.95
16 17 4.392940 ACATCAGGAAAACTCACTCAAGG 58.607 43.478 0.00 0.00 0.00 3.61
17 18 6.261826 AGAAACATCAGGAAAACTCACTCAAG 59.738 38.462 0.00 0.00 0.00 3.02
18 19 6.122277 AGAAACATCAGGAAAACTCACTCAA 58.878 36.000 0.00 0.00 0.00 3.02
19 20 5.684704 AGAAACATCAGGAAAACTCACTCA 58.315 37.500 0.00 0.00 0.00 3.41
20 21 5.760253 TGAGAAACATCAGGAAAACTCACTC 59.240 40.000 0.00 0.00 0.00 3.51
21 22 5.529060 GTGAGAAACATCAGGAAAACTCACT 59.471 40.000 1.10 0.00 44.99 3.41
22 23 5.752712 GTGAGAAACATCAGGAAAACTCAC 58.247 41.667 0.00 0.00 43.32 3.51
23 24 5.296780 GTGTGAGAAACATCAGGAAAACTCA 59.703 40.000 0.00 0.00 41.97 3.41
24 25 5.559035 CGTGTGAGAAACATCAGGAAAACTC 60.559 44.000 0.00 0.00 41.97 3.01
25 26 4.273480 CGTGTGAGAAACATCAGGAAAACT 59.727 41.667 0.00 0.00 41.97 2.66
26 27 4.272504 TCGTGTGAGAAACATCAGGAAAAC 59.727 41.667 0.00 0.00 41.97 2.43
27 28 4.447290 TCGTGTGAGAAACATCAGGAAAA 58.553 39.130 0.00 0.00 41.97 2.29
28 29 4.058124 CTCGTGTGAGAAACATCAGGAAA 58.942 43.478 0.00 0.00 45.57 3.13
29 30 3.554960 CCTCGTGTGAGAAACATCAGGAA 60.555 47.826 0.00 0.00 45.57 3.36
30 31 2.029020 CCTCGTGTGAGAAACATCAGGA 60.029 50.000 0.00 0.00 45.57 3.86
31 32 2.289072 ACCTCGTGTGAGAAACATCAGG 60.289 50.000 0.00 4.82 45.57 3.86
32 33 3.032017 ACCTCGTGTGAGAAACATCAG 57.968 47.619 0.00 0.00 45.57 2.90
33 34 3.469008 AACCTCGTGTGAGAAACATCA 57.531 42.857 0.00 0.00 45.57 3.07
34 35 4.813296 AAAACCTCGTGTGAGAAACATC 57.187 40.909 0.00 0.00 45.57 3.06
35 36 4.638421 TCAAAAACCTCGTGTGAGAAACAT 59.362 37.500 0.00 0.00 45.57 2.71
36 37 4.004314 TCAAAAACCTCGTGTGAGAAACA 58.996 39.130 0.00 0.00 45.57 2.83
37 38 4.340263 GTCAAAAACCTCGTGTGAGAAAC 58.660 43.478 0.00 0.00 45.57 2.78
38 39 3.062909 CGTCAAAAACCTCGTGTGAGAAA 59.937 43.478 0.00 0.00 45.57 2.52
39 40 2.605818 CGTCAAAAACCTCGTGTGAGAA 59.394 45.455 0.00 0.00 45.57 2.87
40 41 2.159212 TCGTCAAAAACCTCGTGTGAGA 60.159 45.455 0.00 0.00 45.57 3.27
41 42 2.198406 TCGTCAAAAACCTCGTGTGAG 58.802 47.619 0.00 0.00 42.18 3.51
42 43 2.198406 CTCGTCAAAAACCTCGTGTGA 58.802 47.619 0.00 0.00 0.00 3.58
43 44 1.260561 CCTCGTCAAAAACCTCGTGTG 59.739 52.381 0.00 0.00 0.00 3.82
44 45 1.578583 CCTCGTCAAAAACCTCGTGT 58.421 50.000 0.00 0.00 0.00 4.49
45 46 0.234884 GCCTCGTCAAAAACCTCGTG 59.765 55.000 0.00 0.00 0.00 4.35
46 47 0.179067 TGCCTCGTCAAAAACCTCGT 60.179 50.000 0.00 0.00 0.00 4.18
47 48 0.941542 TTGCCTCGTCAAAAACCTCG 59.058 50.000 0.00 0.00 0.00 4.63
48 49 3.565516 GAATTGCCTCGTCAAAAACCTC 58.434 45.455 0.00 0.00 0.00 3.85
49 50 2.031157 CGAATTGCCTCGTCAAAAACCT 60.031 45.455 0.00 0.00 34.08 3.50
50 51 2.315901 CGAATTGCCTCGTCAAAAACC 58.684 47.619 0.00 0.00 34.08 3.27
63 64 8.348598 TATACGTTGTTGTATTGCACGAATTGC 61.349 37.037 0.00 0.00 42.24 3.56
64 65 3.971871 ACGTTGTTGTATTGCACGAATTG 59.028 39.130 0.00 0.00 0.00 2.32
65 66 4.217754 ACGTTGTTGTATTGCACGAATT 57.782 36.364 0.00 0.00 0.00 2.17
66 67 3.889196 ACGTTGTTGTATTGCACGAAT 57.111 38.095 0.00 0.00 0.00 3.34
67 68 4.994220 ATACGTTGTTGTATTGCACGAA 57.006 36.364 0.00 0.00 31.01 3.85
68 69 5.061187 CAGTATACGTTGTTGTATTGCACGA 59.939 40.000 0.00 0.00 36.48 4.35
69 70 5.164031 ACAGTATACGTTGTTGTATTGCACG 60.164 40.000 0.00 0.00 36.48 5.34
70 71 6.013085 CACAGTATACGTTGTTGTATTGCAC 58.987 40.000 0.00 0.00 36.48 4.57
71 72 5.697178 ACACAGTATACGTTGTTGTATTGCA 59.303 36.000 0.00 0.00 36.48 4.08
72 73 6.013085 CACACAGTATACGTTGTTGTATTGC 58.987 40.000 9.07 0.00 36.48 3.56
73 74 6.013085 GCACACAGTATACGTTGTTGTATTG 58.987 40.000 9.07 4.85 36.48 1.90
74 75 5.929992 AGCACACAGTATACGTTGTTGTATT 59.070 36.000 9.07 0.00 36.48 1.89
75 76 5.475719 AGCACACAGTATACGTTGTTGTAT 58.524 37.500 9.07 0.00 38.54 2.29
76 77 4.873817 AGCACACAGTATACGTTGTTGTA 58.126 39.130 9.07 0.00 0.00 2.41
77 78 3.724374 AGCACACAGTATACGTTGTTGT 58.276 40.909 9.07 0.13 0.00 3.32
78 79 3.987868 AGAGCACACAGTATACGTTGTTG 59.012 43.478 9.07 6.45 0.00 3.33
79 80 4.252971 AGAGCACACAGTATACGTTGTT 57.747 40.909 9.07 5.12 0.00 2.83
80 81 3.936372 AGAGCACACAGTATACGTTGT 57.064 42.857 0.00 6.59 0.00 3.32
81 82 5.591643 AAAAGAGCACACAGTATACGTTG 57.408 39.130 0.00 1.38 0.00 4.10
82 83 5.178809 GGAAAAAGAGCACACAGTATACGTT 59.821 40.000 0.00 0.00 0.00 3.99
83 84 4.689345 GGAAAAAGAGCACACAGTATACGT 59.311 41.667 0.00 0.00 0.00 3.57
84 85 4.688879 TGGAAAAAGAGCACACAGTATACG 59.311 41.667 0.00 0.00 0.00 3.06
85 86 6.743575 ATGGAAAAAGAGCACACAGTATAC 57.256 37.500 0.00 0.00 0.00 1.47
86 87 9.461312 AAATATGGAAAAAGAGCACACAGTATA 57.539 29.630 0.00 0.00 0.00 1.47
87 88 7.944729 AATATGGAAAAAGAGCACACAGTAT 57.055 32.000 0.00 0.00 0.00 2.12
88 89 7.759489 AAATATGGAAAAAGAGCACACAGTA 57.241 32.000 0.00 0.00 0.00 2.74
89 90 6.655078 AAATATGGAAAAAGAGCACACAGT 57.345 33.333 0.00 0.00 0.00 3.55
90 91 7.951530 AAAAATATGGAAAAAGAGCACACAG 57.048 32.000 0.00 0.00 0.00 3.66
117 118 1.687563 AACTCCGAAAAACCCAGTGG 58.312 50.000 0.63 0.63 37.80 4.00
118 119 2.286772 CGAAACTCCGAAAAACCCAGTG 60.287 50.000 0.00 0.00 0.00 3.66
119 120 1.944709 CGAAACTCCGAAAAACCCAGT 59.055 47.619 0.00 0.00 0.00 4.00
120 121 2.215196 TCGAAACTCCGAAAAACCCAG 58.785 47.619 0.00 0.00 35.42 4.45
121 122 2.215196 CTCGAAACTCCGAAAAACCCA 58.785 47.619 0.00 0.00 38.17 4.51
122 123 1.534163 CCTCGAAACTCCGAAAAACCC 59.466 52.381 0.00 0.00 38.17 4.11
123 124 1.069432 GCCTCGAAACTCCGAAAAACC 60.069 52.381 0.00 0.00 38.17 3.27
124 125 1.600485 TGCCTCGAAACTCCGAAAAAC 59.400 47.619 0.00 0.00 38.17 2.43
125 126 1.956297 TGCCTCGAAACTCCGAAAAA 58.044 45.000 0.00 0.00 38.17 1.94
126 127 1.804151 CATGCCTCGAAACTCCGAAAA 59.196 47.619 0.00 0.00 38.17 2.29
127 128 1.438651 CATGCCTCGAAACTCCGAAA 58.561 50.000 0.00 0.00 38.17 3.46
128 129 0.391130 CCATGCCTCGAAACTCCGAA 60.391 55.000 0.00 0.00 38.17 4.30
129 130 1.218047 CCATGCCTCGAAACTCCGA 59.782 57.895 0.00 0.00 37.03 4.55
130 131 0.179073 ATCCATGCCTCGAAACTCCG 60.179 55.000 0.00 0.00 0.00 4.63
131 132 2.910688 TATCCATGCCTCGAAACTCC 57.089 50.000 0.00 0.00 0.00 3.85
132 133 3.921021 CGTATATCCATGCCTCGAAACTC 59.079 47.826 0.00 0.00 0.00 3.01
133 134 3.306088 CCGTATATCCATGCCTCGAAACT 60.306 47.826 0.00 0.00 0.00 2.66
134 135 2.993899 CCGTATATCCATGCCTCGAAAC 59.006 50.000 0.00 0.00 0.00 2.78
135 136 2.894765 TCCGTATATCCATGCCTCGAAA 59.105 45.455 0.00 0.00 0.00 3.46
136 137 2.521126 TCCGTATATCCATGCCTCGAA 58.479 47.619 0.00 0.00 0.00 3.71
137 138 2.209690 TCCGTATATCCATGCCTCGA 57.790 50.000 0.00 0.00 0.00 4.04
138 139 4.649088 TTATCCGTATATCCATGCCTCG 57.351 45.455 0.00 0.00 0.00 4.63
139 140 6.929606 GGTAATTATCCGTATATCCATGCCTC 59.070 42.308 0.00 0.00 0.00 4.70
140 141 6.183361 GGGTAATTATCCGTATATCCATGCCT 60.183 42.308 0.00 0.00 0.00 4.75
141 142 5.995897 GGGTAATTATCCGTATATCCATGCC 59.004 44.000 0.00 0.00 0.00 4.40
142 143 6.588204 TGGGTAATTATCCGTATATCCATGC 58.412 40.000 10.23 0.00 0.00 4.06
143 144 7.715249 CCTTGGGTAATTATCCGTATATCCATG 59.285 40.741 10.23 0.00 0.00 3.66
144 145 7.147373 CCCTTGGGTAATTATCCGTATATCCAT 60.147 40.741 10.23 0.00 0.00 3.41
145 146 6.157297 CCCTTGGGTAATTATCCGTATATCCA 59.843 42.308 10.23 0.00 0.00 3.41
146 147 6.408891 CCCCTTGGGTAATTATCCGTATATCC 60.409 46.154 10.23 0.00 38.25 2.59
147 148 6.589135 CCCCTTGGGTAATTATCCGTATATC 58.411 44.000 10.23 0.00 38.25 1.63
148 149 6.570654 CCCCTTGGGTAATTATCCGTATAT 57.429 41.667 10.23 0.00 38.25 0.86
150 151 4.921644 CCCCTTGGGTAATTATCCGTAT 57.078 45.455 10.23 0.00 38.25 3.06
164 165 1.725169 TTCCCAACACTCCCCCTTGG 61.725 60.000 0.00 0.00 35.18 3.61
165 166 0.187361 TTTCCCAACACTCCCCCTTG 59.813 55.000 0.00 0.00 0.00 3.61
166 167 0.187606 GTTTCCCAACACTCCCCCTT 59.812 55.000 0.00 0.00 32.54 3.95
167 168 0.701310 AGTTTCCCAACACTCCCCCT 60.701 55.000 0.00 0.00 35.05 4.79
168 169 0.539669 CAGTTTCCCAACACTCCCCC 60.540 60.000 0.00 0.00 35.05 5.40
169 170 0.539669 CCAGTTTCCCAACACTCCCC 60.540 60.000 0.00 0.00 35.05 4.81
170 171 0.539669 CCCAGTTTCCCAACACTCCC 60.540 60.000 0.00 0.00 35.05 4.30
171 172 1.179174 GCCCAGTTTCCCAACACTCC 61.179 60.000 0.00 0.00 35.05 3.85
172 173 1.179174 GGCCCAGTTTCCCAACACTC 61.179 60.000 0.00 0.00 35.05 3.51
173 174 1.152546 GGCCCAGTTTCCCAACACT 60.153 57.895 0.00 0.00 35.05 3.55
174 175 2.207229 GGGCCCAGTTTCCCAACAC 61.207 63.158 19.95 0.00 42.18 3.32
175 176 2.200092 GGGCCCAGTTTCCCAACA 59.800 61.111 19.95 0.00 42.18 3.33
176 177 2.603473 GGGGCCCAGTTTCCCAAC 60.603 66.667 26.86 0.00 44.43 3.77
177 178 3.922364 GGGGGCCCAGTTTCCCAA 61.922 66.667 26.86 0.00 44.43 4.12
178 179 4.959460 AGGGGGCCCAGTTTCCCA 62.959 66.667 26.86 0.00 44.43 4.37
179 180 4.062032 GAGGGGGCCCAGTTTCCC 62.062 72.222 26.86 14.84 41.87 3.97
180 181 4.426313 CGAGGGGGCCCAGTTTCC 62.426 72.222 26.86 15.69 38.92 3.13
181 182 3.327404 TCGAGGGGGCCCAGTTTC 61.327 66.667 26.86 14.64 38.92 2.78
182 183 3.330720 CTCGAGGGGGCCCAGTTT 61.331 66.667 26.86 6.34 38.92 2.66
220 221 2.355956 GGCTAGCCCGTGCGATAC 60.356 66.667 24.19 0.00 44.33 2.24
230 231 3.402095 GAAACGGGAGGGGCTAGCC 62.402 68.421 26.55 26.55 0.00 3.93
231 232 2.189784 GAAACGGGAGGGGCTAGC 59.810 66.667 6.04 6.04 0.00 3.42
232 233 1.993391 TGGAAACGGGAGGGGCTAG 60.993 63.158 0.00 0.00 0.00 3.42
233 234 2.123180 TGGAAACGGGAGGGGCTA 59.877 61.111 0.00 0.00 0.00 3.93
234 235 3.647771 GTGGAAACGGGAGGGGCT 61.648 66.667 0.00 0.00 0.00 5.19
235 236 3.961414 TGTGGAAACGGGAGGGGC 61.961 66.667 0.00 0.00 0.00 5.80
236 237 2.033602 GTGTGGAAACGGGAGGGG 59.966 66.667 0.00 0.00 0.00 4.79
237 238 0.179001 AAAGTGTGGAAACGGGAGGG 60.179 55.000 0.00 0.00 0.00 4.30
238 239 2.148768 GTAAAGTGTGGAAACGGGAGG 58.851 52.381 0.00 0.00 0.00 4.30
239 240 1.796459 CGTAAAGTGTGGAAACGGGAG 59.204 52.381 0.00 0.00 0.00 4.30
240 241 1.138661 ACGTAAAGTGTGGAAACGGGA 59.861 47.619 0.00 0.00 37.86 5.14
241 242 1.585297 ACGTAAAGTGTGGAAACGGG 58.415 50.000 0.00 0.00 37.86 5.28
242 243 4.270808 ACTTAACGTAAAGTGTGGAAACGG 59.729 41.667 0.00 0.00 38.28 4.44
243 244 5.393902 ACTTAACGTAAAGTGTGGAAACG 57.606 39.130 0.00 0.00 38.28 3.60
266 267 2.772930 AGGGTCAAGGGATAAGTACCC 58.227 52.381 0.00 0.00 45.76 3.69
267 268 4.857130 AAAGGGTCAAGGGATAAGTACC 57.143 45.455 0.00 0.00 0.00 3.34
268 269 5.397221 GGGTAAAGGGTCAAGGGATAAGTAC 60.397 48.000 0.00 0.00 0.00 2.73
269 270 4.723285 GGGTAAAGGGTCAAGGGATAAGTA 59.277 45.833 0.00 0.00 0.00 2.24
270 271 3.526430 GGGTAAAGGGTCAAGGGATAAGT 59.474 47.826 0.00 0.00 0.00 2.24
271 272 3.117625 GGGGTAAAGGGTCAAGGGATAAG 60.118 52.174 0.00 0.00 0.00 1.73
272 273 2.854337 GGGGTAAAGGGTCAAGGGATAA 59.146 50.000 0.00 0.00 0.00 1.75
273 274 2.048150 AGGGGTAAAGGGTCAAGGGATA 59.952 50.000 0.00 0.00 0.00 2.59
274 275 1.203701 AGGGGTAAAGGGTCAAGGGAT 60.204 52.381 0.00 0.00 0.00 3.85
275 276 0.197661 AGGGGTAAAGGGTCAAGGGA 59.802 55.000 0.00 0.00 0.00 4.20
276 277 1.975471 TAGGGGTAAAGGGTCAAGGG 58.025 55.000 0.00 0.00 0.00 3.95
277 278 7.294008 TCTTTATATAGGGGTAAAGGGTCAAGG 59.706 40.741 5.38 0.00 38.08 3.61
278 279 8.271398 TCTTTATATAGGGGTAAAGGGTCAAG 57.729 38.462 5.38 0.00 38.08 3.02
279 280 8.075621 TCTCTTTATATAGGGGTAAAGGGTCAA 58.924 37.037 5.07 0.00 38.76 3.18
280 281 7.511714 GTCTCTTTATATAGGGGTAAAGGGTCA 59.488 40.741 5.07 0.00 38.76 4.02
281 282 7.309683 CGTCTCTTTATATAGGGGTAAAGGGTC 60.310 44.444 5.07 0.23 38.76 4.46
282 283 6.496218 CGTCTCTTTATATAGGGGTAAAGGGT 59.504 42.308 5.07 0.00 38.76 4.34
283 284 6.723052 TCGTCTCTTTATATAGGGGTAAAGGG 59.277 42.308 5.38 2.62 38.93 3.95
284 285 7.771927 TCGTCTCTTTATATAGGGGTAAAGG 57.228 40.000 5.38 0.00 38.08 3.11
285 286 9.021807 TCATCGTCTCTTTATATAGGGGTAAAG 57.978 37.037 0.00 0.00 38.59 1.85
286 287 8.945195 TCATCGTCTCTTTATATAGGGGTAAA 57.055 34.615 0.00 0.00 0.00 2.01
287 288 7.122353 GCTCATCGTCTCTTTATATAGGGGTAA 59.878 40.741 0.00 0.00 0.00 2.85
288 289 6.602406 GCTCATCGTCTCTTTATATAGGGGTA 59.398 42.308 0.00 0.00 0.00 3.69
289 290 5.419471 GCTCATCGTCTCTTTATATAGGGGT 59.581 44.000 0.00 0.00 0.00 4.95
290 291 5.419155 TGCTCATCGTCTCTTTATATAGGGG 59.581 44.000 0.00 0.00 0.00 4.79
291 292 6.516739 TGCTCATCGTCTCTTTATATAGGG 57.483 41.667 0.00 0.00 0.00 3.53
292 293 8.246871 TGATTGCTCATCGTCTCTTTATATAGG 58.753 37.037 0.00 0.00 34.08 2.57
293 294 9.800433 ATGATTGCTCATCGTCTCTTTATATAG 57.200 33.333 0.00 0.00 37.58 1.31
295 296 8.933807 CAATGATTGCTCATCGTCTCTTTATAT 58.066 33.333 0.00 0.00 41.34 0.86
296 297 7.928167 ACAATGATTGCTCATCGTCTCTTTATA 59.072 33.333 4.84 0.00 41.34 0.98
297 298 6.765036 ACAATGATTGCTCATCGTCTCTTTAT 59.235 34.615 4.84 0.00 41.34 1.40
298 299 6.108687 ACAATGATTGCTCATCGTCTCTTTA 58.891 36.000 4.84 0.00 41.34 1.85
299 300 4.940046 ACAATGATTGCTCATCGTCTCTTT 59.060 37.500 4.84 0.00 41.34 2.52
300 301 4.511527 ACAATGATTGCTCATCGTCTCTT 58.488 39.130 4.84 0.00 41.34 2.85
301 302 4.134379 ACAATGATTGCTCATCGTCTCT 57.866 40.909 4.84 0.00 41.34 3.10
302 303 5.277058 GGTTACAATGATTGCTCATCGTCTC 60.277 44.000 4.84 0.00 41.34 3.36
303 304 4.572389 GGTTACAATGATTGCTCATCGTCT 59.428 41.667 4.84 0.00 41.34 4.18
304 305 4.260784 GGGTTACAATGATTGCTCATCGTC 60.261 45.833 4.84 0.00 41.34 4.20
305 306 3.627577 GGGTTACAATGATTGCTCATCGT 59.372 43.478 4.84 0.00 41.34 3.73
306 307 3.003689 GGGGTTACAATGATTGCTCATCG 59.996 47.826 4.84 0.00 41.34 3.84
307 308 4.037208 CAGGGGTTACAATGATTGCTCATC 59.963 45.833 4.84 0.00 41.34 2.92
308 309 3.956199 CAGGGGTTACAATGATTGCTCAT 59.044 43.478 4.84 0.00 44.14 2.90
309 310 3.010027 TCAGGGGTTACAATGATTGCTCA 59.990 43.478 4.84 0.00 35.41 4.26
310 311 3.620488 TCAGGGGTTACAATGATTGCTC 58.380 45.455 4.84 0.00 0.00 4.26
311 312 3.737559 TCAGGGGTTACAATGATTGCT 57.262 42.857 4.84 0.00 0.00 3.91
312 313 3.953612 TGATCAGGGGTTACAATGATTGC 59.046 43.478 4.84 0.00 32.68 3.56
313 314 6.321945 TCAATGATCAGGGGTTACAATGATTG 59.678 38.462 3.16 3.16 32.68 2.67
314 315 6.434302 TCAATGATCAGGGGTTACAATGATT 58.566 36.000 0.09 0.00 32.68 2.57
315 316 6.017211 TCAATGATCAGGGGTTACAATGAT 57.983 37.500 0.09 0.00 35.16 2.45
316 317 5.449297 TCAATGATCAGGGGTTACAATGA 57.551 39.130 0.09 0.00 0.00 2.57
317 318 6.720112 AATCAATGATCAGGGGTTACAATG 57.280 37.500 0.09 0.00 0.00 2.82
319 320 9.928618 TTATTAATCAATGATCAGGGGTTACAA 57.071 29.630 0.09 0.00 0.00 2.41
320 321 9.928618 TTTATTAATCAATGATCAGGGGTTACA 57.071 29.630 0.09 0.00 0.00 2.41
323 324 9.887862 ATCTTTATTAATCAATGATCAGGGGTT 57.112 29.630 0.09 0.73 0.00 4.11
341 342 8.631797 GGAAGTACGAAGGAGACTATCTTTATT 58.368 37.037 0.00 0.00 42.68 1.40
342 343 8.000127 AGGAAGTACGAAGGAGACTATCTTTAT 59.000 37.037 0.00 0.00 42.68 1.40
343 344 7.344913 AGGAAGTACGAAGGAGACTATCTTTA 58.655 38.462 0.00 0.00 42.68 1.85
344 345 6.189133 AGGAAGTACGAAGGAGACTATCTTT 58.811 40.000 0.00 0.00 42.68 2.52
345 346 5.757988 AGGAAGTACGAAGGAGACTATCTT 58.242 41.667 0.00 0.00 42.68 2.40
346 347 5.376756 AGGAAGTACGAAGGAGACTATCT 57.623 43.478 0.00 0.00 42.68 1.98
347 348 5.357596 ACAAGGAAGTACGAAGGAGACTATC 59.642 44.000 0.00 0.00 42.68 2.08
348 349 5.125739 CACAAGGAAGTACGAAGGAGACTAT 59.874 44.000 0.00 0.00 42.68 2.12
349 350 4.458295 CACAAGGAAGTACGAAGGAGACTA 59.542 45.833 0.00 0.00 42.68 2.59
351 352 3.005578 ACACAAGGAAGTACGAAGGAGAC 59.994 47.826 0.00 0.00 0.00 3.36
352 353 3.228453 ACACAAGGAAGTACGAAGGAGA 58.772 45.455 0.00 0.00 0.00 3.71
353 354 3.662247 ACACAAGGAAGTACGAAGGAG 57.338 47.619 0.00 0.00 0.00 3.69
354 355 3.385433 TGAACACAAGGAAGTACGAAGGA 59.615 43.478 0.00 0.00 0.00 3.36
355 356 3.724374 TGAACACAAGGAAGTACGAAGG 58.276 45.455 0.00 0.00 0.00 3.46
356 357 5.230942 AGATGAACACAAGGAAGTACGAAG 58.769 41.667 0.00 0.00 0.00 3.79
357 358 5.209818 AGATGAACACAAGGAAGTACGAA 57.790 39.130 0.00 0.00 0.00 3.85
358 359 4.866508 AGATGAACACAAGGAAGTACGA 57.133 40.909 0.00 0.00 0.00 3.43
359 360 5.710984 AGTAGATGAACACAAGGAAGTACG 58.289 41.667 0.00 0.00 0.00 3.67
360 361 7.964604 AAAGTAGATGAACACAAGGAAGTAC 57.035 36.000 0.00 0.00 0.00 2.73
361 362 7.041372 GCAAAAGTAGATGAACACAAGGAAGTA 60.041 37.037 0.00 0.00 0.00 2.24
362 363 6.238759 GCAAAAGTAGATGAACACAAGGAAGT 60.239 38.462 0.00 0.00 0.00 3.01
363 364 6.145535 GCAAAAGTAGATGAACACAAGGAAG 58.854 40.000 0.00 0.00 0.00 3.46
364 365 5.277779 CGCAAAAGTAGATGAACACAAGGAA 60.278 40.000 0.00 0.00 0.00 3.36
365 366 4.213270 CGCAAAAGTAGATGAACACAAGGA 59.787 41.667 0.00 0.00 0.00 3.36
366 367 4.024048 ACGCAAAAGTAGATGAACACAAGG 60.024 41.667 0.00 0.00 0.00 3.61
367 368 4.905866 CACGCAAAAGTAGATGAACACAAG 59.094 41.667 0.00 0.00 0.00 3.16
368 369 4.334203 ACACGCAAAAGTAGATGAACACAA 59.666 37.500 0.00 0.00 0.00 3.33
369 370 3.874543 ACACGCAAAAGTAGATGAACACA 59.125 39.130 0.00 0.00 0.00 3.72
370 371 4.468095 ACACGCAAAAGTAGATGAACAC 57.532 40.909 0.00 0.00 0.00 3.32
371 372 4.318475 CGAACACGCAAAAGTAGATGAACA 60.318 41.667 0.00 0.00 0.00 3.18
372 373 4.084745 TCGAACACGCAAAAGTAGATGAAC 60.085 41.667 0.00 0.00 0.00 3.18
373 374 4.052608 TCGAACACGCAAAAGTAGATGAA 58.947 39.130 0.00 0.00 0.00 2.57
374 375 3.427528 GTCGAACACGCAAAAGTAGATGA 59.572 43.478 0.00 0.00 0.00 2.92
375 376 3.428870 AGTCGAACACGCAAAAGTAGATG 59.571 43.478 0.00 0.00 0.00 2.90
376 377 3.650139 AGTCGAACACGCAAAAGTAGAT 58.350 40.909 0.00 0.00 0.00 1.98
377 378 3.088194 AGTCGAACACGCAAAAGTAGA 57.912 42.857 0.00 0.00 0.00 2.59
378 379 3.979495 AGTAGTCGAACACGCAAAAGTAG 59.021 43.478 0.00 0.00 0.00 2.57
379 380 3.968649 AGTAGTCGAACACGCAAAAGTA 58.031 40.909 0.00 0.00 0.00 2.24
380 381 2.817901 AGTAGTCGAACACGCAAAAGT 58.182 42.857 0.00 0.00 0.00 2.66
381 382 3.784488 GAAGTAGTCGAACACGCAAAAG 58.216 45.455 0.00 0.00 0.00 2.27
382 383 3.847037 GAAGTAGTCGAACACGCAAAA 57.153 42.857 0.00 0.00 0.00 2.44
404 405 1.410737 GCGAATGCAAGCGTCGTAGA 61.411 55.000 16.00 0.00 42.15 2.59
405 406 1.013323 GCGAATGCAAGCGTCGTAG 60.013 57.895 16.00 0.00 42.15 3.51
406 407 1.410737 GAGCGAATGCAAGCGTCGTA 61.411 55.000 16.00 0.00 46.23 3.43
407 408 2.730672 GAGCGAATGCAAGCGTCGT 61.731 57.895 16.00 6.38 46.23 4.34
408 409 2.020559 GAGCGAATGCAAGCGTCG 59.979 61.111 12.24 12.00 46.23 5.12
409 410 2.401195 GGAGCGAATGCAAGCGTC 59.599 61.111 12.24 8.70 46.23 5.19
410 411 3.490759 CGGAGCGAATGCAAGCGT 61.491 61.111 12.24 1.14 46.23 5.07
423 424 2.742372 CGGTCCAAGGTTGCGGAG 60.742 66.667 0.00 0.00 29.98 4.63
424 425 4.323477 CCGGTCCAAGGTTGCGGA 62.323 66.667 0.00 0.00 34.59 5.54
425 426 4.323477 TCCGGTCCAAGGTTGCGG 62.323 66.667 0.00 0.00 34.17 5.69
426 427 3.047877 GTCCGGTCCAAGGTTGCG 61.048 66.667 0.00 0.00 0.00 4.85
427 428 1.671379 GAGTCCGGTCCAAGGTTGC 60.671 63.158 0.00 0.00 0.00 4.17
428 429 1.374252 CGAGTCCGGTCCAAGGTTG 60.374 63.158 0.00 0.00 0.00 3.77
429 430 3.057337 CGAGTCCGGTCCAAGGTT 58.943 61.111 0.00 0.00 0.00 3.50
430 431 3.692406 GCGAGTCCGGTCCAAGGT 61.692 66.667 0.00 0.00 36.06 3.50
431 432 4.452733 GGCGAGTCCGGTCCAAGG 62.453 72.222 0.00 0.00 36.06 3.61
449 450 2.458006 CTTTGTTCCGCAACTCCGCC 62.458 60.000 0.00 0.00 36.72 6.13
450 451 1.082104 CTTTGTTCCGCAACTCCGC 60.082 57.895 0.00 0.00 36.72 5.54
451 452 0.941542 TTCTTTGTTCCGCAACTCCG 59.058 50.000 0.00 0.00 36.72 4.63
452 453 2.218603 TCTTCTTTGTTCCGCAACTCC 58.781 47.619 0.00 0.00 36.72 3.85
453 454 3.498397 TGATCTTCTTTGTTCCGCAACTC 59.502 43.478 0.00 0.00 36.72 3.01
454 455 3.476552 TGATCTTCTTTGTTCCGCAACT 58.523 40.909 0.00 0.00 36.72 3.16
455 456 3.498397 TCTGATCTTCTTTGTTCCGCAAC 59.502 43.478 0.00 0.00 36.72 4.17
456 457 3.738982 TCTGATCTTCTTTGTTCCGCAA 58.261 40.909 0.00 0.00 34.87 4.85
457 458 3.401033 TCTGATCTTCTTTGTTCCGCA 57.599 42.857 0.00 0.00 0.00 5.69
458 459 3.748568 ACTTCTGATCTTCTTTGTTCCGC 59.251 43.478 0.00 0.00 0.00 5.54
459 460 4.090642 CGACTTCTGATCTTCTTTGTTCCG 59.909 45.833 0.00 0.00 0.00 4.30
460 461 4.390297 CCGACTTCTGATCTTCTTTGTTCC 59.610 45.833 0.00 0.00 0.00 3.62
461 462 4.390297 CCCGACTTCTGATCTTCTTTGTTC 59.610 45.833 0.00 0.00 0.00 3.18
462 463 4.040461 TCCCGACTTCTGATCTTCTTTGTT 59.960 41.667 0.00 0.00 0.00 2.83
463 464 3.578716 TCCCGACTTCTGATCTTCTTTGT 59.421 43.478 0.00 0.00 0.00 2.83
464 465 4.193826 TCCCGACTTCTGATCTTCTTTG 57.806 45.455 0.00 0.00 0.00 2.77
465 466 4.383552 CCATCCCGACTTCTGATCTTCTTT 60.384 45.833 0.00 0.00 0.00 2.52
466 467 3.133721 CCATCCCGACTTCTGATCTTCTT 59.866 47.826 0.00 0.00 0.00 2.52
467 468 2.697751 CCATCCCGACTTCTGATCTTCT 59.302 50.000 0.00 0.00 0.00 2.85
468 469 2.695666 TCCATCCCGACTTCTGATCTTC 59.304 50.000 0.00 0.00 0.00 2.87
469 470 2.432510 GTCCATCCCGACTTCTGATCTT 59.567 50.000 0.00 0.00 0.00 2.40
470 471 2.035632 GTCCATCCCGACTTCTGATCT 58.964 52.381 0.00 0.00 0.00 2.75
485 486 1.025812 CGGCTCTCTCGTAAGTCCAT 58.974 55.000 0.00 0.00 39.48 3.41
540 553 6.619018 GCGTTGATGTACCATCGAAAGTTAAA 60.619 38.462 6.73 0.00 32.69 1.52
545 558 2.930040 AGCGTTGATGTACCATCGAAAG 59.070 45.455 6.73 0.00 32.69 2.62
565 578 3.784511 ATCATGGGCTAAGATGTGGAG 57.215 47.619 0.00 0.00 0.00 3.86
578 591 1.202177 CGAGCGGTTTGAAATCATGGG 60.202 52.381 0.00 0.00 0.00 4.00
845 1139 0.725117 GTGGTGGTTATGTACGCAGC 59.275 55.000 0.00 0.00 0.00 5.25
915 1209 0.248702 GGATCGAGTCGAGTTGGAGC 60.249 60.000 21.36 5.00 39.91 4.70
919 1213 1.532921 GCAGAGGATCGAGTCGAGTTG 60.533 57.143 21.36 13.99 42.67 3.16
1280 1580 3.257561 CGGAGAGTGCCGCGAATG 61.258 66.667 8.23 0.00 45.38 2.67
1290 1590 3.063084 GAGGCACCGACGGAGAGT 61.063 66.667 23.38 2.89 0.00 3.24
1353 1653 2.346803 GCTTGCTCCAATGACGACTAA 58.653 47.619 0.00 0.00 0.00 2.24
1357 1657 1.377202 GGGCTTGCTCCAATGACGA 60.377 57.895 0.00 0.00 0.00 4.20
1359 1659 1.675641 ACGGGCTTGCTCCAATGAC 60.676 57.895 0.00 0.00 0.00 3.06
1374 1674 4.619227 AAGGACACGGCCACACGG 62.619 66.667 2.24 0.00 38.39 4.94
1375 1675 3.041940 GAAGGACACGGCCACACG 61.042 66.667 2.24 0.00 40.31 4.49
1376 1676 2.668550 GGAAGGACACGGCCACAC 60.669 66.667 2.24 0.00 0.00 3.82
1377 1677 3.948719 GGGAAGGACACGGCCACA 61.949 66.667 2.24 0.00 0.00 4.17
1378 1678 4.717313 GGGGAAGGACACGGCCAC 62.717 72.222 2.24 0.00 0.00 5.01
1379 1679 4.974438 AGGGGAAGGACACGGCCA 62.974 66.667 2.24 0.00 0.00 5.36
1380 1680 4.097361 GAGGGGAAGGACACGGCC 62.097 72.222 0.00 0.00 0.00 6.13
1381 1681 3.003763 AGAGGGGAAGGACACGGC 61.004 66.667 0.00 0.00 0.00 5.68
1485 1787 3.804325 CACCGAGTATCATCAATGTGTCC 59.196 47.826 0.00 0.00 33.17 4.02
1487 1789 3.197766 ACCACCGAGTATCATCAATGTGT 59.802 43.478 0.00 0.00 33.17 3.72
1488 1790 3.797039 ACCACCGAGTATCATCAATGTG 58.203 45.455 0.00 0.00 33.17 3.21
1538 1865 1.136891 TGGACTGTGTGCATATCTCCG 59.863 52.381 0.00 0.00 0.00 4.63
1671 2019 1.605710 ACATGCACTGCTCAGTTTGAC 59.394 47.619 1.98 0.00 40.20 3.18
1686 2034 6.441093 TCTTGATTAGATCACCAAACATGC 57.559 37.500 0.00 0.00 39.39 4.06
1691 2039 7.632861 TGGAGATTCTTGATTAGATCACCAAA 58.367 34.615 0.00 0.00 39.39 3.28
1727 2075 4.476628 AATTTGCTGGATGGATTTGGAC 57.523 40.909 0.00 0.00 0.00 4.02
1763 2111 3.834231 TGTGACTGGTGAGAATGATCAGA 59.166 43.478 0.09 0.00 0.00 3.27
1805 2153 1.338579 GGGTGAAGAAGCTCTGTCAGG 60.339 57.143 0.00 0.00 0.00 3.86
1906 2254 1.824329 GGAGATGTCCGGCGAGAGA 60.824 63.158 9.30 2.64 31.37 3.10
2032 2380 2.876645 GTCGTCGCGAGCTTCCTG 60.877 66.667 10.24 0.00 36.23 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.