>input_sequence_82812
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-------------------ATGCATCCGCTCGTGGGGGCGCTGCTGGTGGGGGCCGGGGAGCGGTGGTGGTGGCCGTGCT
GGGGCCCGGCGGCGCGCCACGCCGCGGCGTGGGCCGGCGCGCTGGCGCTGGCCGTGTCGGTGGCGTCGTTCGCGCCGGAG
GCCGCGTTCGTGTGGGCGCTGGCCGGCGGCGGGTGCGCGGCCGGGTCGGTGCGCGTGCCGCTCGACGGCGGAGGGGACCA
CGTCTGCGTGCCGGCGAGGATGGCCGGCCGGACCTGCGCCGACATCATCGTGCCGCCGGCATTCGCGGCACTCTCCGTCG
GTGCCTCCGCGTGCTTCGTCCGGGCGATCGCCGTCGGCCGCCGCCACGGCTATTAG------------------------
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>chr5D_1_TraesCS5D01G096100
GATTGTACTATTTTTCCCTTGAGTGAGTTTTCCTGATGTTTCTCACACGAGGTTTTTGACGAGGCAATTCGTGCAATACA
ACAACGTATACTGTGTGCTCTTTTTCCATATTTTTTCCCACTGGGTTTTTCGGAGTTTCGAGGCATGGATATACGGATAA
TTACCCAAGGGGGAGTGTTGGGAAACTGGGCCCCCTCGAGGGGTGGCGGCGGCCGCGTGCGTATCGCACGGGCTAGCCCC
TCCCGTTTCCACACTTTACGTTAAGTGGGTACTTATCCCTTGACCCTTTACCCCTATATAAAGAGACGATGAGCAATCAT
TGTAACCCCTGATCATTGATTAATAAAGATAGTCTCCTTCGTACTTCCTTGTGTTCATCTACTTTTGCGTGTTCGACTAC
TTCGTCTACGACGCTTGCATTCGCTCCGCAACCTTGGACCGGACTCGCCGGCGGAGTTGCGGAACAAAGAAGATCAGAAG
TCGGGATGGACTTACGAGAGAGCCGCCACGGTAACATTTTTTTTTTAGGAT------------GTATAACATTTTAACTT
TCGATGGTACATCAACGCTCCACATCTTAGCCCATGATTTCAAACCGCTCGATCAAGAAAAAAAGAAAAACACGACACC-
TAGATAGCGCGGGCGCAGGGCAATTTACGCACCCAACACGTCTCCTTGGACCGACCTCTCGTTTCAACAAGGCCGGTTTA
GAAACCCCGCGGCCCCTCTTCC---CTCCGCTCACCTACTCAACGGCCACGTATGCGTAACGTA----------------
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--------------------TAACCTCTCCATTCTATCTGCCCCTACCTCCGTCCGTCCCCCACGACGCGCGACGCAGCC
GCTTCACTCGC-CTCCGCGCTGCGTACATAACCACCACCCCGCGCGCCGCACGGACGGCTCGCAACTCGCAACGCCAGTT
GCGCGGCGGCTCCAACT------CGACTCGATCCTCTGCAGGGAGGCCAAGAAAATCAAGGTCGAGCCGAGCGAGCGATC
TCGAGCCCTCCCTCGACCGATGCATCCGCTCGTGGGGGCGCTGCTGGTGGGGGCCGGGGAGCGGTGGTGGTGGCCGTGCT
GGGGCCCGGCGGCGCGCCACGCCGCGGCGTGGGCCGGCGCGCTGGCGCTGGCCGTGTCGGTGGCGTCGTTCGCGCCGGAG
GCCGCGTTCGTGTGGGCGCTGGCCGGCGGCGGGTGCGCGGCCGGGTCGGTGCGCGTGCCGCTCGACGGCGGAGGGGACCA
CGTCTGCGTGCCGGCGAGGATGGCCGGCCGGACCTGCGCCGACATCATCGTGCCGCCGGCATTCGCGGCACTCTCCGTCG
GTGCCTCCGCGTGCTTCGTCCGGGCGATCGCCGTCGGCCGCCGCCACGGCTATTAGTCGTCATTGGAGCAAGCCCGTGTG
GCCGTGTCCTTCCCCTCTGCTGTGCGACGCACGCCTCCCGCTTCTGAACACGTATTATGCCCCGGCTTCGTTTTCTCTCG
GTC--ATAGATGATGTTCATTTTTTTGGAC-ACATTGATGATACTCGGTGGTTAATCTGAAATATTCTCACAAGA-----
-------------------AACAACGGAGATATGCACACAGTCCAGTTGTTCA-----------TCATAGAAAAAAAATT
----------ATGTCGTTATCACTGTGCTGTGCATTTGTCAAACCTGCTTTACTAATCCTAATACTAGTAAGTAAGCTAC
CACGCAATGTACATCTCAGTCAAACTGAGCAGTGCATGTTTGGTGATCTAATCAAGAATCTCCAACCCCATCGCGTCCAA
ATCCATCCAGCAAATTAAGGAGTAGGTCTGTCTGATCATTCTCACCAGTCACACATATCCACAACAGAGTAGCCTGACAG
AGCTTCTTCACCCTCACCTAGTAAGCATGGGTTCTGTGACGACGCCTTCCTGATCCCGTCAAGCTCCTCGGCGACCTCTC
GCATGGAGGGCCTTCTCTCGCCGGACATCTCCAGGCACAGCTTCGCGAGCTTGGCCACCTGCTCCAGCGTCTCCGCCCTC
ACCTCGCTCTTGATCCGCGCGTCCAGCAGGCCGTCCAGCCTGCCGTCCCTCGCCGCCGTCAGGAAGCTCGCGACGACGCT
CTTCTCGTCGTCGGGGGCGGCGAGGTTCAGCGCCTTCCGCGACGTGAGCAGCTCCAGGAGCACCACGCCGAAGCTGTACA
CGTCGCTCTTCTCCGTCAGCCGGCACGTCTGCATGTACTCCGGGTCCAGGTACCCGCACGTCCCCTGCACGAACGTCACC
AGGTGCGCCTCGTCCGTCGGCGCCGGTGCCAGCGACGACGCCCCGAAGTCGGACACCTTGGCGCCGTAGTTCTCGTCGAG
GAGGATGTTGGGGGACTTGACGTCGCCGTGGATGATCGGCGGCGATGCCATCGAGTGCAGGTAC
>chr5A_472
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-----------------------------------------------------------------------GATCAGAAG
TCGGG-TGGACTTATGAGAGAGCGGCCACAATAACATTTTAATTATTATTTTTTGTGTTGAGGGTGTAACATCTTAATTT
TCGATGGTACATCAACGGTCCACATCTTAGTCCATGATTTCAACCCGCTCGATCAAGA-AAAAAGGAAAACACGACACTA
AAGATAGCCCGGGCGCAGGGCAATTAT-GCACCCAACACGTCTCCCTGGACCGACCTCTCGTTTCAACAAGGCCGGTTTA
GAAACCCCACGGCCCCTCTTCCTTTCTCCGCTCACCTGCTCAACGGCCACGTACGCGTAACGTA----------------
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--------------------TAACCTCTCCATTCTATCTGCCCCTCC-----TCCGTCCCCCACGACGCGCGACGCAGCT
GCTTCACTCGC-CTCCGCTCTGCGTACATAACCACCACCCCGCGCGCCGCACGGCCGGCTCGCAACTCGCAACGCCAGTT
GCGCGGCGTCTCAAACTCAAACCCGACTCGATCCTCTGCAGGGTGGCCAAGAAAATCAAGGTCGAGCCGAGCGAGCGATC
TCGAGCCCTCCCTCGACCGATGCATCCGCTCGTGGGGGCGCTGCTGGTGGGGGCCGGGGAGCGGTGGTGGTGGCCGTGCT
GGGGCCCGGCGGCGCGCCACGCCGCGGCGTGGGCCGGCGCGCTGGCGCTGGCCGTGTCGGTGGCGTCGTTCGCGCCGGAG
GCCGCGTTCGTGTGGGCGCTGGCCAGCGGCGGGTGCGCGGCCGGGTCGGTGCGCGTGCCGCTCGACGGCGGCGGCGACCA
CGTCTGCGTGCCGGCGAGGATGGCCGGCCGGACCTGCGCCGACATCATCGTGCCGCCGGTGTTCGCGGCGCTCTCCGTCG
GCGCCTCCGCGTGCTTCGTCCGGACGATCGCCATCGGCCGCCGCCACGGCTACTAGCCATCATTGGAGCAAGC-------
-CCGTGTCCTTCCCCTCTGCTGTGCGACGCACGCCTCC-GCTTCTGAACACGTATTATGTCCCGGCTTCATTTTCTCTCA
GTC--ATAGATGATGTTCATTTTTTTTGGGTACATTGATGATACTCGGTGGTTAATCTGAAATATAGTCACAATACCCCG
ATCCCTCAATCGGATC-------AAGGAAATGCGCACAAAATGCAATTATCCAGGGCATGTTCTTATCATACAGAAAAAT
GTTCATGTCGATGTCGTTATCACTGTGCTGTGCATTTGTCAAACCTGCTTTACTAATCCTAATACTAGTAAGTAAGCTAC
CACGCAATGTACATCTCACTCAAACTGAGCAGTACATGGTTGGTGATCTAATCAAGAATCTCCAACCCCATCGCCTCCAA
ATCCATCCAGCG-ATTAAGGAGTAGGTC----TGATCATTCTCACCAGTCACACATATCCACAACAGAGTAGTCTGACAG
AGCTTCTTCACCCTCACCTAGTAAGCATGGGTTCTGTGAGGACGCCTTCCTGATCCCGTCAAGCTCCTCGGCGACCTCTC
GCATGGAGGGCCTCCTCTCGCCGGACATCTCCAGGCACAGCTTCGCGAGCTTGGCCACCCGCTCCAGCGTCTCCGCCCCC
ACCTCGCTCTTGATCCGCGCGTCCAGCAGGCCGTCCAGCCTGCCGTCCCTCGCCGCCGTGAGGAAGCTCGCGACGACGCT
CTTCTCGTCGTCGGGGGCGGCGAGGTTCAGCGCCTTCCGCGACGTGAGCAGCTCCAGGAGCACCACGCCGAAGCTGTACA
CGTCGCTCTTCTCCGTCAGCCGGCACGTCTGCATGTACTCCGGGTCCAGGTACCCGCACGTCCCCTGCACGAACGTCACC
AGGTGCGCCTCGTCCGTCGGCGCCGGCGCCAGCGACGACGCCCCGAAGTCGGACACCTTGGCGCCGTAGTTCTCGTCGAG
GAGGATGTTGGGGGACTTGACGTCGCCGTGGATGATCGGCGGCGACGCCATCGAGTGCAGGTAC
>chr5B_606
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---------------------------------------------------------AAACAAAAAAAAACACGAGACT-
AAGATAGCCCGGGCGCAGGGCAATTTACGCACCCAACACGTCTCCTTGGACCGATCTTTCGTTTCAACATGGCCGGTTTA
GAAACCCCGCGGCCCCTCTTCCCTCCTCCGCTCACCTACTCAACGGCCACGTATGCGTAACGTATAAGGGCATGTACAAT
GGTTGATAAGATAGTCTTATCTTAAGTCTTGCATGTGATTTAGAGATGACAAAAAAAATTTATCTACAATGAATCATATC
TTAGCTTTATTTTCAATAATTAGTAATTCCTAAAAATGTGGTAAGACATATTATGCTAAGAGATCATCTCTTGTCTTCTT
TTAAATAAGAGAAGACAAGCCTTTTTTTATGAGTTCTCTCTTCTTCACCTCTTCATCTATCCTACGTGACATTGCTAAGA
TAGAATCATTCTACATGGCCTAACCTCTCCATTCTATCTGCCCCTCC-----TCCGCCCCCCACGACGCGCGACGCAGCC
GCTTCACTCGCGCTCCGCTCTGCGTACATAACCACCACCCCGCGCGCCGCACGGCCGGCTCGCAACTCGCAACGCCAGTT
GCGCGGCGTCTCG------AACCCGACTCGATCCTCTGCAGGGAGGCCAAGAAAATCAAGGTCGAGCCGAGCGAGCGATC
TCGAGCCCTCCCTCGACCGATGCATCCGCTCGTGGGGGCGCTGCTGGTGAGTGCCGGGGAGCGGTGGTGGTGGCCGTGCT
GGGGCCCGGCGGCGCGCCACGCCGCGGCGTGGGCCGGCACGCTGGCGCTGGCCGTGTCGGTGGCGTCGTTCGCGCCGGAG
GCCGCGTTCGTGTGGGCGCTGGCCAGCGGCGGGTGCGCGGCCGGGTCGGTGCGCGTGCCGCTCGACGGCGGCGGGGACCA
CGTCTGCGTGCCGGCGAGGATGGCCGGCCGGACCTGCGCCGACATCATCGTGCCGCCGGTGTTCGCGGCGCTCTCCGTCG
GCGCCTCGGCGTGCTTCGTCCGGACGATCGCCATCGGCCGCCGCCACGGCTACTAGCCATCATTGGAGCAAGC-------
-CCGTGTCCTTCCCCTCTGCTGTGCGACGCACGCCTCCCGCTTCTGAACACGTATCATGCCCCCGCTTCGTTTTCTCTCA
GTCATATAGATGATGTTCATTTTTGTTTGGTACATTGATGATACTCGGTGGTTAATCTGAAATATTCTCACAAGAAACAA
CACATCAATCGCAACTTGGAACAATGGAGATATGCACACAGTCCAGATGTCCAATACATGTTCATCATAGAAAAAGGTTT
----------ATGTCGTTATCACTGTGCTGTGCATTTGTCAAACCTGCTTTACTAATCCTAATACTAGTAAGTAAGCTAC
CACGCAATGTACATCTCACTCAAACTGAGCAGTACATGGTTGGTGATCTAATCAAGAATCTCCAACCCCATCGCCTCCAA
ATCCATCCAG-AAATTACGGACTAGGTCTGAC----CATTCTCACCAGTCACACATATCCACAACAGAGTACTGTGACAG
AGCTTCTTCACCCTCACCTAATAAGCATGGATTCTGTGACGACGCCTTCCTGATCCCGTCAAGCTCCTCGGCGACCTCTC
GCATGGAGGGCCTCCTCTCGCCGGACATCTCCAGGCACAGCTTCGCGAGCTTGGCCACCTGCTCCAGCGTCTCCGCCCTC
ACCTCGCTCTTGATCCGCGCGTCCAGCAGGCCGTCCAGCCTGCCGTCCCTCGCCGCCGTGAGGAAGCTCGCGACGACGCT
CTTCTCGTCGTCGGGGGCGGCGAGGTTCAGTGCCTTACGCGACGTGAGCAGCTCCAGGAGCACCACGCCGAAGCTGTACA
CGTCGCTCTTCTCCGTCAGCCGGCACGTCTGCATGTACTCCGGGTCCAGGTACCCGCACGTCCCCTGCACGAACGTCACC
AGGTGCGCCTCGTCCGTCGGCGCCGGCGCCAGCGACGACGCCCCAAAGTCGGACACCTTGGCGCCGTAGTTCTCGTCGAG
GAGGATGTTGGGGGACTTGACGTCGCCGTGGATGATCGGCGGCGATGCCATCGAGTGCAGGTAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
-----S--------S--------S-----SS---------SS--S-SSSS---------------S------S----S--
-----------------S------------S------------S----------------------------------S-
S-------S-----------------------------------------------------------------------
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---------------------------------------------S-SSSSS----------------------------
------------------S-----------------------------------S-------------------------
--------S---S-------------------------------------------------------------------
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------------------------S----------------------------------------------S--------
-----------------------------------------------------------SS--------S----------
-S---------------------S--------S-------------------S---S-S--------------SSSSSSS
S------------------------------------------------------------------------------S
--------------------------S-SS--------------------------------------------------
------------------------S-------------------------S-----------------------------
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------------------S--------------S----S-----------------------------------S-----
------------------------------S-----------------------------------------S-------
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-------------S------------------------------------------------------------------
-----------------------------------------------------------S--------------------
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--------------------------S-----------------------------------------------------
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>forward_135
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-----------------------------------TCCCACTGGGTTTTTCGGAG-------------------------
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>reverse_1865
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------------------------CGGAGATATGCACACAGTCCA-----------------------------------
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