Multiple sequence alignment - TraesCS5D01G095200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G095200 chr5D 100.000 3034 0 0 1 3034 104481717 104478684 0.000000e+00 5603
1 TraesCS5D01G095200 chr5B 93.588 1544 55 18 463 1993 114125664 114124152 0.000000e+00 2263
2 TraesCS5D01G095200 chr5B 87.008 508 57 6 2527 3034 113888587 113888089 5.680000e-157 564
3 TraesCS5D01G095200 chr5B 89.731 409 32 5 3 406 114126480 114126077 5.800000e-142 514
4 TraesCS5D01G095200 chr5A 96.203 1317 33 6 692 1994 107446340 107445027 0.000000e+00 2139
5 TraesCS5D01G095200 chr5A 88.452 407 31 6 3 401 107452149 107451751 7.610000e-131 477
6 TraesCS5D01G095200 chr5A 87.792 385 36 5 1990 2372 107444997 107444622 9.980000e-120 440
7 TraesCS5D01G095200 chr5A 92.929 297 13 5 411 700 107451664 107451369 2.800000e-115 425
8 TraesCS5D01G095200 chr5A 84.309 427 40 8 2300 2702 107444620 107444197 2.840000e-105 392
9 TraesCS5D01G095200 chr5A 90.253 277 26 1 2686 2961 107395459 107395183 8.000000e-96 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G095200 chr5D 104478684 104481717 3033 True 5603.000000 5603 100.000000 1 3034 1 chr5D.!!$R1 3033
1 TraesCS5D01G095200 chr5B 114124152 114126480 2328 True 1388.500000 2263 91.659500 3 1993 2 chr5B.!!$R2 1990
2 TraesCS5D01G095200 chr5A 107444197 107446340 2143 True 990.333333 2139 89.434667 692 2702 3 chr5A.!!$R2 2010
3 TraesCS5D01G095200 chr5A 107451369 107452149 780 True 451.000000 477 90.690500 3 700 2 chr5A.!!$R3 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 904 0.616371 CAGGACCCGGTTTACATCCA 59.384 55.0 0.00 0.0 31.41 3.41 F
1502 1902 0.460635 GTTTCGGGTACATGGCGCTA 60.461 55.0 7.64 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2345 0.036164 TGCACCGCCTATGTTTCAGT 59.964 50.0 0.00 0.0 0.00 3.41 R
2829 3374 0.030504 TGGCAAATTCACTGCACACG 59.969 50.0 3.19 0.0 41.78 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 7.553334 TGTTAGACATAGACCCTACAATTGTC 58.447 38.462 15.85 0.00 33.84 3.18
191 200 6.126681 TGGAAGATCATCTAATGTGTCATGGT 60.127 38.462 0.00 0.00 0.00 3.55
215 224 6.621316 TGCAAATTCATGTGCTTTGATTTT 57.379 29.167 16.22 0.00 41.48 1.82
227 236 5.064707 GTGCTTTGATTTTCTAGACGCCATA 59.935 40.000 0.00 0.00 0.00 2.74
234 243 5.353394 TTTTCTAGACGCCATAACATCCT 57.647 39.130 0.00 0.00 0.00 3.24
247 256 9.003658 CGCCATAACATCCTAATCTTATTTTCT 57.996 33.333 0.00 0.00 0.00 2.52
299 311 8.263940 TCTAAAACAGCGCACTAGATATTTTT 57.736 30.769 11.47 3.96 0.00 1.94
341 353 7.595819 TTCTCTCTTCTTCTCTCTTCAAGTT 57.404 36.000 0.00 0.00 0.00 2.66
351 363 2.953020 CTCTTCAAGTTCGTGGAGAGG 58.047 52.381 13.62 0.05 44.58 3.69
355 367 7.625481 CTCTTCAAGTTCGTGGAGAGGATCC 62.625 52.000 2.48 2.48 44.58 3.36
428 802 7.157347 AGTCCCGTTTAGTTAGTTTTTCCTAG 58.843 38.462 0.00 0.00 0.00 3.02
432 806 7.603784 CCCGTTTAGTTAGTTTTTCCTAGCTTA 59.396 37.037 0.00 0.00 31.84 3.09
449 823 8.879759 TCCTAGCTTAATAGTTCATTTTTCACG 58.120 33.333 0.00 0.00 0.00 4.35
524 904 0.616371 CAGGACCCGGTTTACATCCA 59.384 55.000 0.00 0.00 31.41 3.41
561 944 9.491675 TCAATTTCATGCATGTCTTTATTTGTT 57.508 25.926 25.43 5.68 0.00 2.83
875 1258 1.442526 CCATGGCAGCTCGGCTTTAG 61.443 60.000 0.00 0.00 36.40 1.85
1075 1475 2.108362 GGCGTAACGGGGATCAGG 59.892 66.667 0.00 0.00 0.00 3.86
1076 1476 2.588034 GCGTAACGGGGATCAGGC 60.588 66.667 0.00 0.00 0.00 4.85
1077 1477 2.279252 CGTAACGGGGATCAGGCG 60.279 66.667 0.00 0.00 0.00 5.52
1078 1478 2.108362 GTAACGGGGATCAGGCGG 59.892 66.667 0.00 0.00 0.00 6.13
1079 1479 3.857038 TAACGGGGATCAGGCGGC 61.857 66.667 0.00 0.00 0.00 6.53
1161 1561 2.335712 GGCGCTGTGCTTTAGCCTT 61.336 57.895 13.46 0.00 45.43 4.35
1397 1797 2.892373 TGCTGTAATTACACGCAAGC 57.108 45.000 26.48 21.73 45.62 4.01
1409 1809 2.758089 CGCAAGCTGCATCTGGTCC 61.758 63.158 1.02 0.00 45.36 4.46
1502 1902 0.460635 GTTTCGGGTACATGGCGCTA 60.461 55.000 7.64 0.00 0.00 4.26
1728 2134 4.151582 CCCCGTATTGACCGGCGT 62.152 66.667 6.01 0.00 44.13 5.68
1930 2341 3.931578 GCAAGATTCTGCGGGATATACT 58.068 45.455 0.00 0.00 31.50 2.12
1932 2343 4.865365 GCAAGATTCTGCGGGATATACTAC 59.135 45.833 0.00 0.00 31.50 2.73
1933 2344 4.966965 AGATTCTGCGGGATATACTACG 57.033 45.455 0.00 0.00 0.00 3.51
1934 2345 4.586884 AGATTCTGCGGGATATACTACGA 58.413 43.478 0.00 0.00 0.00 3.43
1935 2346 4.395542 AGATTCTGCGGGATATACTACGAC 59.604 45.833 0.00 0.00 0.00 4.34
1994 2405 7.111247 TCATTTTGGTTTTGCTATATCTGGG 57.889 36.000 0.00 0.00 0.00 4.45
1995 2406 5.930837 TTTTGGTTTTGCTATATCTGGGG 57.069 39.130 0.00 0.00 0.00 4.96
2025 2472 3.019564 CGAGAATTTGGGGAGCTTCATT 58.980 45.455 0.00 0.00 0.00 2.57
2027 2474 2.498885 AGAATTTGGGGAGCTTCATTGC 59.501 45.455 0.00 0.00 0.00 3.56
2028 2475 1.941377 ATTTGGGGAGCTTCATTGCA 58.059 45.000 0.00 0.00 34.99 4.08
2029 2476 1.714541 TTTGGGGAGCTTCATTGCAA 58.285 45.000 0.00 0.00 34.99 4.08
2034 2481 4.802307 TGGGGAGCTTCATTGCAATAATA 58.198 39.130 12.53 0.00 34.99 0.98
2086 2533 7.148474 GCTGTAATAAGAAAGGATGAACGTTCA 60.148 37.037 31.41 31.41 42.14 3.18
2096 2543 1.210155 GAACGTTCATGTGGCCAGC 59.790 57.895 23.12 1.20 0.00 4.85
2097 2544 1.514678 GAACGTTCATGTGGCCAGCA 61.515 55.000 23.12 8.26 0.00 4.41
2098 2545 1.518056 AACGTTCATGTGGCCAGCAG 61.518 55.000 5.11 0.00 0.00 4.24
2099 2546 1.968017 CGTTCATGTGGCCAGCAGT 60.968 57.895 5.11 0.00 0.00 4.40
2100 2547 1.878775 GTTCATGTGGCCAGCAGTC 59.121 57.895 5.11 0.00 0.00 3.51
2101 2548 0.607489 GTTCATGTGGCCAGCAGTCT 60.607 55.000 5.11 0.00 0.00 3.24
2102 2549 0.983467 TTCATGTGGCCAGCAGTCTA 59.017 50.000 5.11 0.00 0.00 2.59
2111 2558 1.069227 GCCAGCAGTCTAAAACCAACG 60.069 52.381 0.00 0.00 0.00 4.10
2118 2565 4.124238 CAGTCTAAAACCAACGAGGAACA 58.876 43.478 5.70 0.00 41.22 3.18
2124 2571 0.981183 ACCAACGAGGAACATGCCTA 59.019 50.000 5.70 0.00 41.22 3.93
2182 2629 3.826157 TGGGACATGCCTAACAGAAAAAG 59.174 43.478 0.00 0.00 36.66 2.27
2194 2641 6.420903 CCTAACAGAAAAAGCTAAAACTTGCC 59.579 38.462 0.00 0.00 0.00 4.52
2201 2648 6.918892 AAAAGCTAAAACTTGCCGATTTTT 57.081 29.167 0.00 0.00 30.80 1.94
2214 2661 6.377327 TGCCGATTTTTCCTCTATTTCATC 57.623 37.500 0.00 0.00 0.00 2.92
2231 2678 4.837896 TCATCTAAGATAGACGCCACAG 57.162 45.455 0.00 0.00 37.69 3.66
2235 2682 4.202161 ATCTAAGATAGACGCCACAGTTGG 60.202 45.833 0.00 0.00 41.03 3.77
2237 2684 1.623811 AGATAGACGCCACAGTTGGTT 59.376 47.619 0.00 0.00 45.98 3.67
2238 2685 1.732259 GATAGACGCCACAGTTGGTTG 59.268 52.381 0.00 0.00 45.98 3.77
2250 2697 6.072175 GCCACAGTTGGTTGAGAATTATAACA 60.072 38.462 0.00 0.00 45.98 2.41
2257 2704 7.591006 TGGTTGAGAATTATAACACGAAGAC 57.409 36.000 0.00 0.00 0.00 3.01
2258 2705 7.383687 TGGTTGAGAATTATAACACGAAGACT 58.616 34.615 0.00 0.00 0.00 3.24
2260 2707 9.021863 GGTTGAGAATTATAACACGAAGACTAG 57.978 37.037 0.00 0.00 0.00 2.57
2279 2726 8.068892 AGACTAGATGTTAACAACCTCTAAGG 57.931 38.462 13.23 7.26 37.90 2.69
2282 2729 8.312564 ACTAGATGTTAACAACCTCTAAGGAAC 58.687 37.037 13.23 0.00 37.90 3.62
2286 2733 5.073965 TGTTAACAACCTCTAAGGAACCCAT 59.926 40.000 5.64 0.00 37.67 4.00
2298 2745 4.065214 AGGAACCCATTTTCATCACCAT 57.935 40.909 0.00 0.00 0.00 3.55
2329 2850 4.813027 AGCCTCATAGTTGTGCAAAAATG 58.187 39.130 0.00 0.00 0.00 2.32
2330 2851 3.928375 GCCTCATAGTTGTGCAAAAATGG 59.072 43.478 0.00 0.00 0.00 3.16
2340 2861 0.038343 GCAAAAATGGCGCCTTCTCA 60.038 50.000 29.70 7.00 0.00 3.27
2341 2862 1.986698 CAAAAATGGCGCCTTCTCAG 58.013 50.000 29.70 10.05 0.00 3.35
2343 2864 1.168714 AAAATGGCGCCTTCTCAGAC 58.831 50.000 29.70 0.00 0.00 3.51
2346 2867 1.548357 ATGGCGCCTTCTCAGACTGT 61.548 55.000 29.70 0.00 0.00 3.55
2351 2872 1.738365 CGCCTTCTCAGACTGTCATGG 60.738 57.143 10.88 2.39 0.00 3.66
2356 2877 3.049708 TCTCAGACTGTCATGGCTTTG 57.950 47.619 10.88 0.00 0.00 2.77
2363 2884 2.756760 ACTGTCATGGCTTTGGCAATAG 59.243 45.455 0.00 2.93 42.43 1.73
2366 2887 1.752498 TCATGGCTTTGGCAATAGCTG 59.248 47.619 23.70 18.10 42.43 4.24
2372 2893 2.428171 GCTTTGGCAATAGCTGGATCAA 59.572 45.455 20.02 0.00 41.70 2.57
2382 2903 1.572415 AGCTGGATCAATGACCCCATT 59.428 47.619 6.65 0.00 43.37 3.16
2399 2920 4.352893 CCCATTGAAGGGTTTACTCCAAT 58.647 43.478 0.00 0.00 44.24 3.16
2405 2926 4.352595 TGAAGGGTTTACTCCAATCTTCCA 59.647 41.667 0.00 0.00 0.00 3.53
2423 2944 4.492182 TCCATGAAGGATAGATGGGAGA 57.508 45.455 0.00 0.00 43.07 3.71
2435 2956 3.060866 GGGAGACCGAGTTGCACT 58.939 61.111 0.00 0.00 43.64 4.40
2444 2968 0.173708 CGAGTTGCACTACCTCCTCC 59.826 60.000 0.00 0.00 0.00 4.30
2448 2972 0.970937 TTGCACTACCTCCTCCTCCG 60.971 60.000 0.00 0.00 0.00 4.63
2451 2975 0.970937 CACTACCTCCTCCTCCGCAA 60.971 60.000 0.00 0.00 0.00 4.85
2488 3030 9.605275 TGTTGATTTTCTATCTAACATCTGGAG 57.395 33.333 0.00 0.00 0.00 3.86
2505 3047 2.813908 GGTCGCCAACACTAGCCG 60.814 66.667 0.00 0.00 0.00 5.52
2506 3048 3.488090 GTCGCCAACACTAGCCGC 61.488 66.667 0.00 0.00 0.00 6.53
2516 3058 3.554342 CTAGCCGCCAGGGATGCT 61.554 66.667 7.12 7.12 38.47 3.79
2536 3078 0.319813 GTGTTGGGACTTTGGCATGC 60.320 55.000 9.90 9.90 0.00 4.06
2538 3080 1.152376 TTGGGACTTTGGCATGCCA 60.152 52.632 35.59 35.59 45.63 4.92
2556 3098 3.181451 TGCCAGGTATCAACAGATCATCC 60.181 47.826 0.00 0.00 0.00 3.51
2569 3111 3.041211 AGATCATCCCGGATTGTCTTCA 58.959 45.455 0.73 0.00 0.00 3.02
2570 3112 3.649981 AGATCATCCCGGATTGTCTTCAT 59.350 43.478 0.73 0.00 0.00 2.57
2585 3127 6.753897 TGTCTTCATCGAATGAACATATCG 57.246 37.500 0.00 10.58 43.84 2.92
2620 3162 3.369147 CAGAACGTCGATGCATCTTCTTT 59.631 43.478 23.73 15.10 0.00 2.52
2650 3192 6.934645 ACAACTTATCTCGAATCAAAGAACCA 59.065 34.615 4.14 0.00 0.00 3.67
2669 3211 7.918076 AGAACCATTGTGTAGATTAGAAGGAA 58.082 34.615 0.00 0.00 0.00 3.36
2670 3212 8.552296 AGAACCATTGTGTAGATTAGAAGGAAT 58.448 33.333 0.00 0.00 0.00 3.01
2672 3214 9.838339 AACCATTGTGTAGATTAGAAGGAATAG 57.162 33.333 0.00 0.00 0.00 1.73
2694 3239 5.735766 AGGTAAAGGAGATTAAGAGTGTGC 58.264 41.667 0.00 0.00 0.00 4.57
2702 3247 5.581085 GGAGATTAAGAGTGTGCGTACATTT 59.419 40.000 10.21 7.79 39.39 2.32
2703 3248 6.408858 AGATTAAGAGTGTGCGTACATTTG 57.591 37.500 10.21 0.00 39.39 2.32
2704 3249 5.932303 AGATTAAGAGTGTGCGTACATTTGT 59.068 36.000 10.21 0.34 39.39 2.83
2705 3250 3.878086 AAGAGTGTGCGTACATTTGTG 57.122 42.857 10.21 0.00 39.39 3.33
2706 3251 1.531149 AGAGTGTGCGTACATTTGTGC 59.469 47.619 10.21 0.00 39.39 4.57
2707 3252 1.262950 GAGTGTGCGTACATTTGTGCA 59.737 47.619 10.21 0.00 39.39 4.57
2708 3253 1.264020 AGTGTGCGTACATTTGTGCAG 59.736 47.619 10.21 0.00 39.39 4.41
2709 3254 0.040514 TGTGCGTACATTTGTGCAGC 60.041 50.000 0.82 4.64 38.14 5.25
2710 3255 0.729140 GTGCGTACATTTGTGCAGCC 60.729 55.000 0.00 0.00 38.14 4.85
2711 3256 0.888736 TGCGTACATTTGTGCAGCCT 60.889 50.000 10.86 0.00 32.75 4.58
2712 3257 0.454957 GCGTACATTTGTGCAGCCTG 60.455 55.000 0.00 0.00 0.00 4.85
2713 3258 1.155889 CGTACATTTGTGCAGCCTGA 58.844 50.000 0.00 0.00 0.00 3.86
2714 3259 1.739466 CGTACATTTGTGCAGCCTGAT 59.261 47.619 0.00 0.00 0.00 2.90
2715 3260 2.935849 CGTACATTTGTGCAGCCTGATA 59.064 45.455 0.00 0.00 0.00 2.15
2716 3261 3.001634 CGTACATTTGTGCAGCCTGATAG 59.998 47.826 0.00 0.00 0.00 2.08
2717 3262 2.372264 ACATTTGTGCAGCCTGATAGG 58.628 47.619 0.00 0.00 38.80 2.57
2718 3263 2.025981 ACATTTGTGCAGCCTGATAGGA 60.026 45.455 0.00 0.00 37.67 2.94
2719 3264 2.877097 TTTGTGCAGCCTGATAGGAA 57.123 45.000 0.00 0.00 37.67 3.36
2720 3265 2.408271 TTGTGCAGCCTGATAGGAAG 57.592 50.000 0.00 0.00 37.67 3.46
2721 3266 1.571955 TGTGCAGCCTGATAGGAAGA 58.428 50.000 0.00 0.00 37.67 2.87
2722 3267 2.121948 TGTGCAGCCTGATAGGAAGAT 58.878 47.619 0.00 0.00 37.67 2.40
2723 3268 3.308401 TGTGCAGCCTGATAGGAAGATA 58.692 45.455 0.00 0.00 37.67 1.98
2724 3269 3.070159 TGTGCAGCCTGATAGGAAGATAC 59.930 47.826 0.00 0.00 37.67 2.24
2725 3270 3.070159 GTGCAGCCTGATAGGAAGATACA 59.930 47.826 0.00 0.00 37.67 2.29
2726 3271 3.711190 TGCAGCCTGATAGGAAGATACAA 59.289 43.478 0.00 0.00 37.67 2.41
2727 3272 4.164030 TGCAGCCTGATAGGAAGATACAAA 59.836 41.667 0.00 0.00 37.67 2.83
2728 3273 5.163163 TGCAGCCTGATAGGAAGATACAAAT 60.163 40.000 0.00 0.00 37.67 2.32
2729 3274 5.411053 GCAGCCTGATAGGAAGATACAAATC 59.589 44.000 0.00 0.00 37.67 2.17
2730 3275 6.743773 GCAGCCTGATAGGAAGATACAAATCT 60.744 42.308 0.00 0.00 38.91 2.40
2731 3276 7.526192 GCAGCCTGATAGGAAGATACAAATCTA 60.526 40.741 0.00 0.00 37.95 1.98
2732 3277 7.816995 CAGCCTGATAGGAAGATACAAATCTAC 59.183 40.741 0.00 0.00 37.95 2.59
2733 3278 7.732593 AGCCTGATAGGAAGATACAAATCTACT 59.267 37.037 0.00 0.00 37.95 2.57
2734 3279 8.032451 GCCTGATAGGAAGATACAAATCTACTC 58.968 40.741 0.00 0.00 37.95 2.59
2735 3280 8.240682 CCTGATAGGAAGATACAAATCTACTCG 58.759 40.741 0.00 0.00 41.81 4.18
2736 3281 8.919777 TGATAGGAAGATACAAATCTACTCGA 57.080 34.615 0.00 0.00 41.81 4.04
2737 3282 8.784994 TGATAGGAAGATACAAATCTACTCGAC 58.215 37.037 0.00 0.00 41.81 4.20
2738 3283 8.927675 ATAGGAAGATACAAATCTACTCGACT 57.072 34.615 0.00 0.00 41.81 4.18
2740 3285 8.156994 AGGAAGATACAAATCTACTCGACTAC 57.843 38.462 0.00 0.00 41.81 2.73
2741 3286 7.774157 AGGAAGATACAAATCTACTCGACTACA 59.226 37.037 0.00 0.00 41.81 2.74
2742 3287 8.404000 GGAAGATACAAATCTACTCGACTACAA 58.596 37.037 0.00 0.00 41.81 2.41
2743 3288 9.953697 GAAGATACAAATCTACTCGACTACAAT 57.046 33.333 0.00 0.00 41.81 2.71
2744 3289 9.953697 AAGATACAAATCTACTCGACTACAATC 57.046 33.333 0.00 0.00 41.81 2.67
2745 3290 8.283992 AGATACAAATCTACTCGACTACAATCG 58.716 37.037 0.00 0.00 40.82 3.34
2746 3291 6.192234 ACAAATCTACTCGACTACAATCGT 57.808 37.500 0.00 0.00 42.80 3.73
2747 3292 6.618811 ACAAATCTACTCGACTACAATCGTT 58.381 36.000 0.00 0.00 42.80 3.85
2748 3293 6.527023 ACAAATCTACTCGACTACAATCGTTG 59.473 38.462 0.00 0.00 42.80 4.10
2749 3294 6.432607 AATCTACTCGACTACAATCGTTGA 57.567 37.500 5.01 0.00 42.80 3.18
2750 3295 5.868043 TCTACTCGACTACAATCGTTGAA 57.132 39.130 5.01 0.00 42.80 2.69
2751 3296 6.245115 TCTACTCGACTACAATCGTTGAAA 57.755 37.500 5.01 0.00 42.80 2.69
2752 3297 6.082338 TCTACTCGACTACAATCGTTGAAAC 58.918 40.000 5.01 0.00 42.80 2.78
2753 3298 4.613944 ACTCGACTACAATCGTTGAAACA 58.386 39.130 5.01 0.00 42.80 2.83
2754 3299 4.680110 ACTCGACTACAATCGTTGAAACAG 59.320 41.667 5.01 0.82 42.80 3.16
2755 3300 4.862350 TCGACTACAATCGTTGAAACAGA 58.138 39.130 5.01 0.00 42.80 3.41
2756 3301 5.283294 TCGACTACAATCGTTGAAACAGAA 58.717 37.500 5.01 0.00 42.80 3.02
2757 3302 5.749588 TCGACTACAATCGTTGAAACAGAAA 59.250 36.000 5.01 0.00 42.80 2.52
2758 3303 6.256104 TCGACTACAATCGTTGAAACAGAAAA 59.744 34.615 5.01 0.00 42.80 2.29
2759 3304 6.353582 CGACTACAATCGTTGAAACAGAAAAC 59.646 38.462 5.01 0.00 37.33 2.43
2760 3305 7.079182 ACTACAATCGTTGAAACAGAAAACA 57.921 32.000 5.01 0.00 0.00 2.83
2761 3306 7.703328 ACTACAATCGTTGAAACAGAAAACAT 58.297 30.769 5.01 0.00 0.00 2.71
2762 3307 8.832521 ACTACAATCGTTGAAACAGAAAACATA 58.167 29.630 5.01 0.00 0.00 2.29
2763 3308 9.825972 CTACAATCGTTGAAACAGAAAACATAT 57.174 29.630 5.01 0.00 0.00 1.78
2768 3313 8.996988 TCGTTGAAACAGAAAACATATAACAC 57.003 30.769 0.00 0.00 0.00 3.32
2769 3314 7.794810 TCGTTGAAACAGAAAACATATAACACG 59.205 33.333 0.00 0.00 0.00 4.49
2770 3315 7.794810 CGTTGAAACAGAAAACATATAACACGA 59.205 33.333 0.00 0.00 0.00 4.35
2771 3316 9.440784 GTTGAAACAGAAAACATATAACACGAA 57.559 29.630 0.00 0.00 0.00 3.85
2784 3329 9.554724 ACATATAACACGAAAATCATGTGAAAC 57.445 29.630 0.00 0.00 37.08 2.78
2797 3342 3.126001 TGTGAAACAGTGAGATGGACC 57.874 47.619 0.00 0.00 45.67 4.46
2798 3343 2.705658 TGTGAAACAGTGAGATGGACCT 59.294 45.455 0.00 0.00 45.67 3.85
2799 3344 3.901222 TGTGAAACAGTGAGATGGACCTA 59.099 43.478 0.00 0.00 45.67 3.08
2800 3345 4.021104 TGTGAAACAGTGAGATGGACCTAG 60.021 45.833 0.00 0.00 45.67 3.02
2801 3346 3.515502 TGAAACAGTGAGATGGACCTAGG 59.484 47.826 7.41 7.41 0.00 3.02
2802 3347 2.166907 ACAGTGAGATGGACCTAGGG 57.833 55.000 14.81 0.00 0.00 3.53
2803 3348 1.343478 ACAGTGAGATGGACCTAGGGG 60.343 57.143 14.81 0.00 38.88 4.79
2817 3362 5.995565 ACCTAGGGGTTAAAGCAAATTTC 57.004 39.130 14.81 0.00 44.73 2.17
2818 3363 5.399113 ACCTAGGGGTTAAAGCAAATTTCA 58.601 37.500 14.81 0.00 44.73 2.69
2819 3364 5.841783 ACCTAGGGGTTAAAGCAAATTTCAA 59.158 36.000 14.81 0.00 44.73 2.69
2820 3365 6.327887 ACCTAGGGGTTAAAGCAAATTTCAAA 59.672 34.615 14.81 0.00 44.73 2.69
2821 3366 7.017155 ACCTAGGGGTTAAAGCAAATTTCAAAT 59.983 33.333 14.81 0.00 44.73 2.32
2822 3367 7.334171 CCTAGGGGTTAAAGCAAATTTCAAATG 59.666 37.037 0.00 0.00 32.01 2.32
2823 3368 6.836242 AGGGGTTAAAGCAAATTTCAAATGA 58.164 32.000 0.00 0.00 32.01 2.57
2824 3369 7.460910 AGGGGTTAAAGCAAATTTCAAATGAT 58.539 30.769 0.00 0.00 32.01 2.45
2825 3370 7.607607 AGGGGTTAAAGCAAATTTCAAATGATC 59.392 33.333 0.00 0.00 32.01 2.92
2826 3371 7.390162 GGGGTTAAAGCAAATTTCAAATGATCA 59.610 33.333 0.00 0.00 32.01 2.92
2827 3372 8.445493 GGGTTAAAGCAAATTTCAAATGATCAG 58.555 33.333 0.09 0.00 32.01 2.90
2828 3373 7.959109 GGTTAAAGCAAATTTCAAATGATCAGC 59.041 33.333 0.09 0.00 32.01 4.26
2829 3374 6.490566 AAAGCAAATTTCAAATGATCAGCC 57.509 33.333 0.09 0.00 0.00 4.85
2830 3375 4.178540 AGCAAATTTCAAATGATCAGCCG 58.821 39.130 0.09 0.00 0.00 5.52
2831 3376 3.928375 GCAAATTTCAAATGATCAGCCGT 59.072 39.130 0.09 0.00 0.00 5.68
2832 3377 4.201647 GCAAATTTCAAATGATCAGCCGTG 60.202 41.667 0.09 0.00 0.00 4.94
2833 3378 4.789012 AATTTCAAATGATCAGCCGTGT 57.211 36.364 0.09 0.00 0.00 4.49
2834 3379 3.557577 TTTCAAATGATCAGCCGTGTG 57.442 42.857 0.09 0.00 0.00 3.82
2835 3380 0.804364 TCAAATGATCAGCCGTGTGC 59.196 50.000 0.09 0.00 41.71 4.57
2836 3381 0.522626 CAAATGATCAGCCGTGTGCA 59.477 50.000 0.09 0.00 44.83 4.57
2837 3382 0.806868 AAATGATCAGCCGTGTGCAG 59.193 50.000 0.09 0.00 44.83 4.41
2838 3383 0.321919 AATGATCAGCCGTGTGCAGT 60.322 50.000 0.09 0.00 44.83 4.40
2839 3384 1.022982 ATGATCAGCCGTGTGCAGTG 61.023 55.000 0.09 0.00 44.83 3.66
2840 3385 1.374631 GATCAGCCGTGTGCAGTGA 60.375 57.895 0.00 0.00 44.83 3.41
2841 3386 0.950555 GATCAGCCGTGTGCAGTGAA 60.951 55.000 0.00 0.00 44.83 3.18
2842 3387 0.321919 ATCAGCCGTGTGCAGTGAAT 60.322 50.000 0.00 0.00 44.83 2.57
2843 3388 0.534877 TCAGCCGTGTGCAGTGAATT 60.535 50.000 0.00 0.00 44.83 2.17
2844 3389 0.311790 CAGCCGTGTGCAGTGAATTT 59.688 50.000 0.00 0.00 44.83 1.82
2845 3390 0.311790 AGCCGTGTGCAGTGAATTTG 59.688 50.000 0.00 0.00 44.83 2.32
2846 3391 1.277495 GCCGTGTGCAGTGAATTTGC 61.277 55.000 0.00 0.00 41.86 3.68
2847 3392 0.664166 CCGTGTGCAGTGAATTTGCC 60.664 55.000 0.00 0.00 40.81 4.52
2848 3393 0.030504 CGTGTGCAGTGAATTTGCCA 59.969 50.000 0.00 0.00 40.81 4.92
2849 3394 1.535649 CGTGTGCAGTGAATTTGCCAA 60.536 47.619 0.00 0.00 40.81 4.52
2850 3395 2.548875 GTGTGCAGTGAATTTGCCAAA 58.451 42.857 0.00 0.00 40.81 3.28
2851 3396 2.935201 GTGTGCAGTGAATTTGCCAAAA 59.065 40.909 0.00 0.00 40.81 2.44
2852 3397 3.560896 GTGTGCAGTGAATTTGCCAAAAT 59.439 39.130 0.00 0.00 40.81 1.82
2853 3398 4.035441 GTGTGCAGTGAATTTGCCAAAATT 59.965 37.500 0.00 0.00 46.37 1.82
2866 3411 9.628746 AATTTGCCAAAATTCATCATAAAAAGC 57.371 25.926 0.00 0.00 41.18 3.51
2867 3412 7.982761 TTGCCAAAATTCATCATAAAAAGCT 57.017 28.000 0.00 0.00 0.00 3.74
2868 3413 7.599630 TGCCAAAATTCATCATAAAAAGCTC 57.400 32.000 0.00 0.00 0.00 4.09
2869 3414 6.594937 TGCCAAAATTCATCATAAAAAGCTCC 59.405 34.615 0.00 0.00 0.00 4.70
2870 3415 6.594937 GCCAAAATTCATCATAAAAAGCTCCA 59.405 34.615 0.00 0.00 0.00 3.86
2871 3416 7.119553 GCCAAAATTCATCATAAAAAGCTCCAA 59.880 33.333 0.00 0.00 0.00 3.53
2872 3417 9.001542 CCAAAATTCATCATAAAAAGCTCCAAA 57.998 29.630 0.00 0.00 0.00 3.28
2873 3418 9.815936 CAAAATTCATCATAAAAAGCTCCAAAC 57.184 29.630 0.00 0.00 0.00 2.93
2874 3419 9.558396 AAAATTCATCATAAAAAGCTCCAAACA 57.442 25.926 0.00 0.00 0.00 2.83
2875 3420 9.729281 AAATTCATCATAAAAAGCTCCAAACAT 57.271 25.926 0.00 0.00 0.00 2.71
2876 3421 8.712285 ATTCATCATAAAAAGCTCCAAACATG 57.288 30.769 0.00 0.00 0.00 3.21
2877 3422 7.465353 TCATCATAAAAAGCTCCAAACATGA 57.535 32.000 0.00 0.00 0.00 3.07
2878 3423 7.894708 TCATCATAAAAAGCTCCAAACATGAA 58.105 30.769 0.00 0.00 0.00 2.57
2879 3424 8.533657 TCATCATAAAAAGCTCCAAACATGAAT 58.466 29.630 0.00 0.00 0.00 2.57
2880 3425 9.806203 CATCATAAAAAGCTCCAAACATGAATA 57.194 29.630 0.00 0.00 0.00 1.75
2881 3426 9.807649 ATCATAAAAAGCTCCAAACATGAATAC 57.192 29.630 0.00 0.00 0.00 1.89
2882 3427 8.801299 TCATAAAAAGCTCCAAACATGAATACA 58.199 29.630 0.00 0.00 0.00 2.29
2883 3428 9.421806 CATAAAAAGCTCCAAACATGAATACAA 57.578 29.630 0.00 0.00 0.00 2.41
2918 3463 8.789881 TTTACACTCAATGAAAATACAAACCG 57.210 30.769 0.00 0.00 0.00 4.44
2919 3464 6.627395 ACACTCAATGAAAATACAAACCGA 57.373 33.333 0.00 0.00 0.00 4.69
2920 3465 7.214467 ACACTCAATGAAAATACAAACCGAT 57.786 32.000 0.00 0.00 0.00 4.18
2921 3466 7.305474 ACACTCAATGAAAATACAAACCGATC 58.695 34.615 0.00 0.00 0.00 3.69
2922 3467 7.040755 ACACTCAATGAAAATACAAACCGATCA 60.041 33.333 0.00 0.00 0.00 2.92
2923 3468 7.271223 CACTCAATGAAAATACAAACCGATCAC 59.729 37.037 0.00 0.00 0.00 3.06
2924 3469 6.616947 TCAATGAAAATACAAACCGATCACC 58.383 36.000 0.00 0.00 0.00 4.02
2925 3470 6.432783 TCAATGAAAATACAAACCGATCACCT 59.567 34.615 0.00 0.00 0.00 4.00
2926 3471 5.621197 TGAAAATACAAACCGATCACCTG 57.379 39.130 0.00 0.00 0.00 4.00
2927 3472 5.309638 TGAAAATACAAACCGATCACCTGA 58.690 37.500 0.00 0.00 0.00 3.86
2928 3473 5.765677 TGAAAATACAAACCGATCACCTGAA 59.234 36.000 0.00 0.00 0.00 3.02
2929 3474 5.622770 AAATACAAACCGATCACCTGAAC 57.377 39.130 0.00 0.00 0.00 3.18
2930 3475 1.508632 ACAAACCGATCACCTGAACG 58.491 50.000 0.00 0.00 39.57 3.95
2936 3481 2.293677 CGATCACCTGAACGGAATGA 57.706 50.000 0.00 0.00 36.81 2.57
2937 3482 2.826428 CGATCACCTGAACGGAATGAT 58.174 47.619 0.00 0.00 36.81 2.45
2938 3483 3.977427 CGATCACCTGAACGGAATGATA 58.023 45.455 0.00 0.00 36.81 2.15
2939 3484 4.368315 CGATCACCTGAACGGAATGATAA 58.632 43.478 0.00 0.00 36.81 1.75
2940 3485 4.209288 CGATCACCTGAACGGAATGATAAC 59.791 45.833 0.00 0.00 36.81 1.89
2941 3486 3.517602 TCACCTGAACGGAATGATAACG 58.482 45.455 0.00 0.00 36.31 3.18
2942 3487 3.056393 TCACCTGAACGGAATGATAACGT 60.056 43.478 0.00 0.00 43.43 3.99
2943 3488 4.158209 TCACCTGAACGGAATGATAACGTA 59.842 41.667 0.00 0.00 40.31 3.57
2944 3489 4.503007 CACCTGAACGGAATGATAACGTAG 59.497 45.833 0.00 0.00 40.31 3.51
2945 3490 4.400251 ACCTGAACGGAATGATAACGTAGA 59.600 41.667 0.00 0.00 40.31 2.59
2946 3491 5.068723 ACCTGAACGGAATGATAACGTAGAT 59.931 40.000 0.00 0.00 40.31 1.98
2947 3492 5.402568 CCTGAACGGAATGATAACGTAGATG 59.597 44.000 0.00 0.00 40.31 2.90
2948 3493 5.898174 TGAACGGAATGATAACGTAGATGT 58.102 37.500 0.00 0.00 40.31 3.06
2949 3494 5.746721 TGAACGGAATGATAACGTAGATGTG 59.253 40.000 0.00 0.00 40.31 3.21
2950 3495 4.049186 ACGGAATGATAACGTAGATGTGC 58.951 43.478 0.00 0.00 39.30 4.57
2951 3496 4.048504 CGGAATGATAACGTAGATGTGCA 58.951 43.478 0.00 0.00 0.00 4.57
2952 3497 4.686091 CGGAATGATAACGTAGATGTGCAT 59.314 41.667 0.00 0.00 0.00 3.96
2953 3498 5.164051 CGGAATGATAACGTAGATGTGCATC 60.164 44.000 4.12 4.12 38.09 3.91
2955 3500 6.425114 GGAATGATAACGTAGATGTGCATCTT 59.575 38.462 18.34 4.96 45.31 2.40
2956 3501 7.041780 GGAATGATAACGTAGATGTGCATCTTT 60.042 37.037 18.34 10.40 45.31 2.52
2957 3502 7.792374 ATGATAACGTAGATGTGCATCTTTT 57.208 32.000 18.34 12.16 45.31 2.27
2958 3503 7.609760 TGATAACGTAGATGTGCATCTTTTT 57.390 32.000 18.34 11.87 45.31 1.94
2959 3504 8.710835 TGATAACGTAGATGTGCATCTTTTTA 57.289 30.769 18.34 13.28 45.31 1.52
2960 3505 8.817100 TGATAACGTAGATGTGCATCTTTTTAG 58.183 33.333 18.34 9.24 45.31 1.85
2961 3506 8.718102 ATAACGTAGATGTGCATCTTTTTAGT 57.282 30.769 18.34 9.74 45.31 2.24
2962 3507 6.408858 ACGTAGATGTGCATCTTTTTAGTG 57.591 37.500 18.34 5.59 45.31 2.74
2963 3508 5.932303 ACGTAGATGTGCATCTTTTTAGTGT 59.068 36.000 18.34 6.08 45.31 3.55
2964 3509 7.094631 ACGTAGATGTGCATCTTTTTAGTGTA 58.905 34.615 18.34 0.00 45.31 2.90
2965 3510 7.063074 ACGTAGATGTGCATCTTTTTAGTGTAC 59.937 37.037 18.34 7.65 45.31 2.90
2966 3511 7.062956 CGTAGATGTGCATCTTTTTAGTGTACA 59.937 37.037 18.34 0.00 45.31 2.90
2967 3512 7.744087 AGATGTGCATCTTTTTAGTGTACAA 57.256 32.000 8.74 0.00 45.31 2.41
2968 3513 8.340618 AGATGTGCATCTTTTTAGTGTACAAT 57.659 30.769 8.74 0.00 45.31 2.71
2969 3514 8.796475 AGATGTGCATCTTTTTAGTGTACAATT 58.204 29.630 0.00 0.00 45.31 2.32
2970 3515 9.410556 GATGTGCATCTTTTTAGTGTACAATTT 57.589 29.630 0.00 0.00 40.77 1.82
2985 3530 8.391106 AGTGTACAATTTATCTCGATTTGAAGC 58.609 33.333 0.00 0.00 0.00 3.86
2986 3531 8.175069 GTGTACAATTTATCTCGATTTGAAGCA 58.825 33.333 0.00 0.00 0.00 3.91
2987 3532 8.175069 TGTACAATTTATCTCGATTTGAAGCAC 58.825 33.333 0.00 0.00 0.00 4.40
2988 3533 6.555315 ACAATTTATCTCGATTTGAAGCACC 58.445 36.000 0.00 0.00 0.00 5.01
2989 3534 4.857871 TTTATCTCGATTTGAAGCACCG 57.142 40.909 0.00 0.00 0.00 4.94
2990 3535 2.386661 ATCTCGATTTGAAGCACCGT 57.613 45.000 0.00 0.00 0.00 4.83
2991 3536 2.163818 TCTCGATTTGAAGCACCGTT 57.836 45.000 0.00 0.00 0.00 4.44
2992 3537 1.798223 TCTCGATTTGAAGCACCGTTG 59.202 47.619 0.00 0.00 0.00 4.10
2993 3538 1.531149 CTCGATTTGAAGCACCGTTGT 59.469 47.619 0.00 0.00 0.00 3.32
2994 3539 2.734606 CTCGATTTGAAGCACCGTTGTA 59.265 45.455 0.00 0.00 0.00 2.41
2995 3540 3.331150 TCGATTTGAAGCACCGTTGTAT 58.669 40.909 0.00 0.00 0.00 2.29
2996 3541 4.496360 TCGATTTGAAGCACCGTTGTATA 58.504 39.130 0.00 0.00 0.00 1.47
2997 3542 4.565166 TCGATTTGAAGCACCGTTGTATAG 59.435 41.667 0.00 0.00 0.00 1.31
2998 3543 4.565166 CGATTTGAAGCACCGTTGTATAGA 59.435 41.667 0.00 0.00 0.00 1.98
2999 3544 5.234329 CGATTTGAAGCACCGTTGTATAGAT 59.766 40.000 0.00 0.00 0.00 1.98
3000 3545 6.238103 CGATTTGAAGCACCGTTGTATAGATT 60.238 38.462 0.00 0.00 0.00 2.40
3001 3546 7.042992 CGATTTGAAGCACCGTTGTATAGATTA 60.043 37.037 0.00 0.00 0.00 1.75
3002 3547 7.534085 TTTGAAGCACCGTTGTATAGATTAG 57.466 36.000 0.00 0.00 0.00 1.73
3003 3548 6.459670 TGAAGCACCGTTGTATAGATTAGA 57.540 37.500 0.00 0.00 0.00 2.10
3004 3549 6.869695 TGAAGCACCGTTGTATAGATTAGAA 58.130 36.000 0.00 0.00 0.00 2.10
3005 3550 6.755141 TGAAGCACCGTTGTATAGATTAGAAC 59.245 38.462 0.00 0.00 0.00 3.01
3006 3551 5.279384 AGCACCGTTGTATAGATTAGAACG 58.721 41.667 7.75 7.75 41.75 3.95
3011 3556 5.824429 CGTTGTATAGATTAGAACGGGACA 58.176 41.667 7.03 0.00 39.50 4.02
3012 3557 6.267817 CGTTGTATAGATTAGAACGGGACAA 58.732 40.000 7.03 0.00 39.50 3.18
3013 3558 6.417044 CGTTGTATAGATTAGAACGGGACAAG 59.583 42.308 7.03 0.00 39.50 3.16
3014 3559 7.263496 GTTGTATAGATTAGAACGGGACAAGT 58.737 38.462 0.00 0.00 0.00 3.16
3015 3560 6.802608 TGTATAGATTAGAACGGGACAAGTG 58.197 40.000 0.00 0.00 0.00 3.16
3016 3561 6.604396 TGTATAGATTAGAACGGGACAAGTGA 59.396 38.462 0.00 0.00 0.00 3.41
3017 3562 4.884668 AGATTAGAACGGGACAAGTGAA 57.115 40.909 0.00 0.00 0.00 3.18
3018 3563 4.822026 AGATTAGAACGGGACAAGTGAAG 58.178 43.478 0.00 0.00 0.00 3.02
3019 3564 3.396260 TTAGAACGGGACAAGTGAAGG 57.604 47.619 0.00 0.00 0.00 3.46
3020 3565 1.420430 AGAACGGGACAAGTGAAGGA 58.580 50.000 0.00 0.00 0.00 3.36
3021 3566 1.344763 AGAACGGGACAAGTGAAGGAG 59.655 52.381 0.00 0.00 0.00 3.69
3022 3567 1.343465 GAACGGGACAAGTGAAGGAGA 59.657 52.381 0.00 0.00 0.00 3.71
3023 3568 1.420430 ACGGGACAAGTGAAGGAGAA 58.580 50.000 0.00 0.00 0.00 2.87
3024 3569 1.978580 ACGGGACAAGTGAAGGAGAAT 59.021 47.619 0.00 0.00 0.00 2.40
3025 3570 2.372172 ACGGGACAAGTGAAGGAGAATT 59.628 45.455 0.00 0.00 0.00 2.17
3026 3571 3.581332 ACGGGACAAGTGAAGGAGAATTA 59.419 43.478 0.00 0.00 0.00 1.40
3027 3572 3.933332 CGGGACAAGTGAAGGAGAATTAC 59.067 47.826 0.00 0.00 0.00 1.89
3028 3573 3.933332 GGGACAAGTGAAGGAGAATTACG 59.067 47.826 0.00 0.00 0.00 3.18
3029 3574 3.933332 GGACAAGTGAAGGAGAATTACGG 59.067 47.826 0.00 0.00 0.00 4.02
3030 3575 3.335579 ACAAGTGAAGGAGAATTACGGC 58.664 45.455 0.00 0.00 0.00 5.68
3031 3576 3.244422 ACAAGTGAAGGAGAATTACGGCA 60.244 43.478 0.00 0.00 0.00 5.69
3032 3577 2.973945 AGTGAAGGAGAATTACGGCAC 58.026 47.619 0.00 0.00 0.00 5.01
3033 3578 2.301870 AGTGAAGGAGAATTACGGCACA 59.698 45.455 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.339610 CTTCGCTCTACCAGGATCCTG 59.660 57.143 31.69 31.69 43.26 3.86
1 2 1.698506 CTTCGCTCTACCAGGATCCT 58.301 55.000 9.02 9.02 0.00 3.24
6 7 0.737715 GTGTGCTTCGCTCTACCAGG 60.738 60.000 0.00 0.00 0.00 4.45
30 31 7.764901 GGTCTATGTCTAACAACTTTTAGGGAG 59.235 40.741 0.00 0.00 31.01 4.30
191 200 6.621316 AAATCAAAGCACATGAATTTGCAA 57.379 29.167 0.00 0.00 41.48 4.08
215 224 6.010850 AGATTAGGATGTTATGGCGTCTAGA 58.989 40.000 0.00 0.00 0.00 2.43
424 798 8.879759 TCGTGAAAAATGAACTATTAAGCTAGG 58.120 33.333 0.00 0.00 0.00 3.02
524 904 8.692710 ACATGCATGAAATTGAGATACTTTCAT 58.307 29.630 32.75 0.22 45.65 2.57
875 1258 2.678336 CTCGGATAAGCCAAAGGTTGTC 59.322 50.000 0.00 0.00 39.93 3.18
889 1272 2.758327 ACACGGCAGGCTCGGATA 60.758 61.111 0.55 0.00 0.00 2.59
997 1391 2.741092 GTGACTGGGCGTCCTGAA 59.259 61.111 20.75 4.46 42.13 3.02
1058 1452 2.108362 CCTGATCCCCGTTACGCC 59.892 66.667 0.00 0.00 0.00 5.68
1243 1643 2.126071 CACCGAGTACACCGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
1397 1797 2.983433 GTCGATGGACCAGATGCAG 58.017 57.895 0.00 0.00 37.19 4.41
1409 1809 1.338105 ACTCCATGTGTGTGGTCGATG 60.338 52.381 0.00 0.00 40.27 3.84
1445 1845 6.426327 CACACACGATCAAATTAACAACTCA 58.574 36.000 0.00 0.00 0.00 3.41
1478 1878 0.393808 CCATGTACCCGAAACCCTGG 60.394 60.000 0.00 0.00 0.00 4.45
1770 2177 0.179111 TCCGATCAGTTCATCGCACC 60.179 55.000 0.00 0.00 43.66 5.01
1930 2341 1.820519 ACCGCCTATGTTTCAGTCGTA 59.179 47.619 0.00 0.00 0.00 3.43
1932 2343 0.999406 CACCGCCTATGTTTCAGTCG 59.001 55.000 0.00 0.00 0.00 4.18
1933 2344 0.727398 GCACCGCCTATGTTTCAGTC 59.273 55.000 0.00 0.00 0.00 3.51
1934 2345 0.036164 TGCACCGCCTATGTTTCAGT 59.964 50.000 0.00 0.00 0.00 3.41
1935 2346 1.064505 CATGCACCGCCTATGTTTCAG 59.935 52.381 0.00 0.00 0.00 3.02
2028 2475 9.410556 GGCTAATTGCAATCGAATGTTATTATT 57.589 29.630 13.38 0.00 45.15 1.40
2029 2476 8.028938 GGGCTAATTGCAATCGAATGTTATTAT 58.971 33.333 13.38 0.00 45.15 1.28
2034 2481 3.701040 AGGGCTAATTGCAATCGAATGTT 59.299 39.130 13.38 0.00 45.15 2.71
2045 2492 1.467920 ACAGCTTCAGGGCTAATTGC 58.532 50.000 0.00 0.00 41.00 3.56
2086 2533 2.162681 GTTTTAGACTGCTGGCCACAT 58.837 47.619 0.00 0.00 0.00 3.21
2096 2543 4.124238 TGTTCCTCGTTGGTTTTAGACTG 58.876 43.478 0.00 0.00 37.07 3.51
2097 2544 4.411256 TGTTCCTCGTTGGTTTTAGACT 57.589 40.909 0.00 0.00 37.07 3.24
2098 2545 4.612939 GCATGTTCCTCGTTGGTTTTAGAC 60.613 45.833 0.00 0.00 37.07 2.59
2099 2546 3.500680 GCATGTTCCTCGTTGGTTTTAGA 59.499 43.478 0.00 0.00 37.07 2.10
2100 2547 3.365969 GGCATGTTCCTCGTTGGTTTTAG 60.366 47.826 0.00 0.00 37.07 1.85
2101 2548 2.554893 GGCATGTTCCTCGTTGGTTTTA 59.445 45.455 0.00 0.00 37.07 1.52
2102 2549 1.339929 GGCATGTTCCTCGTTGGTTTT 59.660 47.619 0.00 0.00 37.07 2.43
2111 2558 3.198872 GTGCTAAGTAGGCATGTTCCTC 58.801 50.000 0.00 0.00 41.86 3.71
2118 2565 4.010349 GGAACTTTGTGCTAAGTAGGCAT 58.990 43.478 0.02 0.00 41.86 4.40
2124 2571 1.235724 GGCGGAACTTTGTGCTAAGT 58.764 50.000 0.00 0.00 39.97 2.24
2169 2616 6.420903 GGCAAGTTTTAGCTTTTTCTGTTAGG 59.579 38.462 0.00 0.00 0.00 2.69
2182 2629 4.556233 AGGAAAAATCGGCAAGTTTTAGC 58.444 39.130 0.00 0.00 35.43 3.09
2201 2648 7.121463 GGCGTCTATCTTAGATGAAATAGAGGA 59.879 40.741 12.87 0.00 43.02 3.71
2214 2661 3.448686 CCAACTGTGGCGTCTATCTTAG 58.551 50.000 0.00 0.00 38.35 2.18
2231 2678 7.955864 GTCTTCGTGTTATAATTCTCAACCAAC 59.044 37.037 0.00 0.00 0.00 3.77
2235 2682 9.784680 TCTAGTCTTCGTGTTATAATTCTCAAC 57.215 33.333 0.00 0.00 0.00 3.18
2237 2684 9.952188 CATCTAGTCTTCGTGTTATAATTCTCA 57.048 33.333 0.00 0.00 0.00 3.27
2238 2685 9.953697 ACATCTAGTCTTCGTGTTATAATTCTC 57.046 33.333 0.00 0.00 0.00 2.87
2250 2697 6.342338 AGGTTGTTAACATCTAGTCTTCGT 57.658 37.500 9.56 0.00 0.00 3.85
2260 2707 5.646793 GGGTTCCTTAGAGGTTGTTAACATC 59.353 44.000 9.56 8.65 42.19 3.06
2262 2709 4.412858 TGGGTTCCTTAGAGGTTGTTAACA 59.587 41.667 3.59 3.59 36.53 2.41
2279 2726 4.497300 CACATGGTGATGAAAATGGGTTC 58.503 43.478 0.00 0.00 35.23 3.62
2282 2729 2.736081 CGCACATGGTGATGAAAATGGG 60.736 50.000 0.00 0.00 35.23 4.00
2286 2733 2.777094 TCTCGCACATGGTGATGAAAA 58.223 42.857 0.00 0.00 35.23 2.29
2298 2745 1.186200 ACTATGAGGCTTCTCGCACA 58.814 50.000 0.00 0.00 40.31 4.57
2329 2850 1.446966 GACAGTCTGAGAAGGCGCC 60.447 63.158 21.89 21.89 0.00 6.53
2330 2851 0.108424 ATGACAGTCTGAGAAGGCGC 60.108 55.000 6.91 0.00 0.00 6.53
2340 2861 0.111061 TGCCAAAGCCATGACAGTCT 59.889 50.000 1.31 0.00 38.69 3.24
2341 2862 0.961019 TTGCCAAAGCCATGACAGTC 59.039 50.000 0.00 0.00 38.69 3.51
2343 2864 2.480759 GCTATTGCCAAAGCCATGACAG 60.481 50.000 0.00 0.00 38.69 3.51
2346 2867 1.752498 CAGCTATTGCCAAAGCCATGA 59.248 47.619 0.00 0.00 39.64 3.07
2351 2872 2.026641 TGATCCAGCTATTGCCAAAGC 58.973 47.619 0.00 4.18 40.80 3.51
2356 2877 2.555757 GGTCATTGATCCAGCTATTGCC 59.444 50.000 0.00 0.00 40.80 4.52
2363 2884 2.077687 AATGGGGTCATTGATCCAGC 57.922 50.000 17.65 1.98 41.62 4.85
2382 2903 4.352595 TGGAAGATTGGAGTAAACCCTTCA 59.647 41.667 0.00 0.00 0.00 3.02
2405 2926 3.169099 CGGTCTCCCATCTATCCTTCAT 58.831 50.000 0.00 0.00 0.00 2.57
2435 2956 2.050350 CGTTGCGGAGGAGGAGGTA 61.050 63.158 0.00 0.00 0.00 3.08
2448 2972 2.686558 TCAACATTGAAGCTCGTTGC 57.313 45.000 0.00 0.00 38.85 4.17
2451 2975 5.695851 AGAAAATCAACATTGAAGCTCGT 57.304 34.783 0.00 0.00 41.13 4.18
2484 3026 1.972198 CTAGTGTTGGCGACCTCCA 59.028 57.895 1.61 0.00 0.00 3.86
2486 3028 1.448013 GGCTAGTGTTGGCGACCTC 60.448 63.158 1.61 0.00 0.00 3.85
2505 3047 2.345760 CCAACACAGCATCCCTGGC 61.346 63.158 0.00 0.00 46.14 4.85
2506 3048 1.679977 CCCAACACAGCATCCCTGG 60.680 63.158 0.00 0.00 46.14 4.45
2516 3058 1.039068 CATGCCAAAGTCCCAACACA 58.961 50.000 0.00 0.00 0.00 3.72
2518 3060 1.470996 GGCATGCCAAAGTCCCAACA 61.471 55.000 32.08 0.00 35.81 3.33
2536 3078 3.555795 CGGGATGATCTGTTGATACCTGG 60.556 52.174 0.00 0.00 32.19 4.45
2538 3080 2.634940 CCGGGATGATCTGTTGATACCT 59.365 50.000 0.00 0.00 32.19 3.08
2539 3081 2.632996 TCCGGGATGATCTGTTGATACC 59.367 50.000 0.00 0.00 32.19 2.73
2556 3098 3.457234 TCATTCGATGAAGACAATCCGG 58.543 45.455 0.00 0.00 36.11 5.14
2569 3111 4.257267 TCAGGCGATATGTTCATTCGAT 57.743 40.909 15.56 6.03 34.92 3.59
2570 3112 3.726291 TCAGGCGATATGTTCATTCGA 57.274 42.857 15.56 0.00 34.92 3.71
2585 3127 2.352960 GACGTTCTGATTCCATTCAGGC 59.647 50.000 0.00 0.00 42.78 4.85
2604 3146 6.828502 TGTACATAAAGAAGATGCATCGAC 57.171 37.500 20.67 17.44 0.00 4.20
2606 3148 7.239166 AGTTGTACATAAAGAAGATGCATCG 57.761 36.000 20.67 6.72 0.00 3.84
2646 3188 9.838339 CTATTCCTTCTAATCTACACAATGGTT 57.162 33.333 0.00 0.00 0.00 3.67
2669 3211 7.501844 GCACACTCTTAATCTCCTTTACCTAT 58.498 38.462 0.00 0.00 0.00 2.57
2670 3212 6.405508 CGCACACTCTTAATCTCCTTTACCTA 60.406 42.308 0.00 0.00 0.00 3.08
2672 3214 4.567159 CGCACACTCTTAATCTCCTTTACC 59.433 45.833 0.00 0.00 0.00 2.85
2694 3239 1.155889 TCAGGCTGCACAAATGTACG 58.844 50.000 10.34 0.00 0.00 3.67
2702 3247 1.571955 TCTTCCTATCAGGCTGCACA 58.428 50.000 10.34 0.00 34.61 4.57
2703 3248 2.926778 ATCTTCCTATCAGGCTGCAC 57.073 50.000 10.34 0.00 34.61 4.57
2704 3249 3.308401 TGTATCTTCCTATCAGGCTGCA 58.692 45.455 10.34 0.00 34.61 4.41
2705 3250 4.342862 TTGTATCTTCCTATCAGGCTGC 57.657 45.455 10.34 0.00 34.61 5.25
2706 3251 6.767456 AGATTTGTATCTTCCTATCAGGCTG 58.233 40.000 8.58 8.58 37.90 4.85
2707 3252 7.732593 AGTAGATTTGTATCTTCCTATCAGGCT 59.267 37.037 0.00 0.00 41.38 4.58
2708 3253 7.902087 AGTAGATTTGTATCTTCCTATCAGGC 58.098 38.462 0.00 0.00 41.38 4.85
2709 3254 8.240682 CGAGTAGATTTGTATCTTCCTATCAGG 58.759 40.741 0.00 0.00 41.38 3.86
2710 3255 9.004717 TCGAGTAGATTTGTATCTTCCTATCAG 57.995 37.037 0.00 0.00 41.38 2.90
2711 3256 8.784994 GTCGAGTAGATTTGTATCTTCCTATCA 58.215 37.037 0.00 0.00 41.38 2.15
2712 3257 9.005777 AGTCGAGTAGATTTGTATCTTCCTATC 57.994 37.037 0.00 0.00 41.38 2.08
2713 3258 8.927675 AGTCGAGTAGATTTGTATCTTCCTAT 57.072 34.615 0.00 0.00 41.38 2.57
2714 3259 9.270640 GTAGTCGAGTAGATTTGTATCTTCCTA 57.729 37.037 0.00 0.00 41.38 2.94
2715 3260 7.774157 TGTAGTCGAGTAGATTTGTATCTTCCT 59.226 37.037 0.00 0.00 41.38 3.36
2716 3261 7.928103 TGTAGTCGAGTAGATTTGTATCTTCC 58.072 38.462 0.00 0.00 41.38 3.46
2717 3262 9.953697 ATTGTAGTCGAGTAGATTTGTATCTTC 57.046 33.333 0.00 0.00 41.38 2.87
2718 3263 9.953697 GATTGTAGTCGAGTAGATTTGTATCTT 57.046 33.333 0.00 0.00 41.38 2.40
2719 3264 8.283992 CGATTGTAGTCGAGTAGATTTGTATCT 58.716 37.037 0.00 0.00 44.06 1.98
2720 3265 8.068977 ACGATTGTAGTCGAGTAGATTTGTATC 58.931 37.037 0.00 0.00 44.06 2.24
2721 3266 7.928103 ACGATTGTAGTCGAGTAGATTTGTAT 58.072 34.615 0.00 0.00 44.06 2.29
2722 3267 7.312657 ACGATTGTAGTCGAGTAGATTTGTA 57.687 36.000 0.00 0.00 44.06 2.41
2723 3268 6.192234 ACGATTGTAGTCGAGTAGATTTGT 57.808 37.500 0.00 3.56 44.06 2.83
2724 3269 6.745907 TCAACGATTGTAGTCGAGTAGATTTG 59.254 38.462 0.00 2.95 44.06 2.32
2725 3270 6.849502 TCAACGATTGTAGTCGAGTAGATTT 58.150 36.000 0.00 0.00 44.06 2.17
2726 3271 6.432607 TCAACGATTGTAGTCGAGTAGATT 57.567 37.500 0.00 0.00 44.06 2.40
2727 3272 6.432607 TTCAACGATTGTAGTCGAGTAGAT 57.567 37.500 0.00 0.00 44.06 1.98
2728 3273 5.868043 TTCAACGATTGTAGTCGAGTAGA 57.132 39.130 0.00 0.00 44.06 2.59
2729 3274 5.854866 TGTTTCAACGATTGTAGTCGAGTAG 59.145 40.000 0.00 0.00 44.06 2.57
2730 3275 5.761003 TGTTTCAACGATTGTAGTCGAGTA 58.239 37.500 3.77 0.00 44.06 2.59
2731 3276 4.613944 TGTTTCAACGATTGTAGTCGAGT 58.386 39.130 3.77 0.00 44.06 4.18
2732 3277 4.915667 TCTGTTTCAACGATTGTAGTCGAG 59.084 41.667 3.77 0.00 44.06 4.04
2733 3278 4.862350 TCTGTTTCAACGATTGTAGTCGA 58.138 39.130 3.77 0.00 44.06 4.20
2734 3279 5.570262 TTCTGTTTCAACGATTGTAGTCG 57.430 39.130 0.00 0.00 46.56 4.18
2735 3280 7.184106 TGTTTTCTGTTTCAACGATTGTAGTC 58.816 34.615 0.00 0.00 0.00 2.59
2736 3281 7.079182 TGTTTTCTGTTTCAACGATTGTAGT 57.921 32.000 0.00 0.00 0.00 2.73
2737 3282 9.825972 ATATGTTTTCTGTTTCAACGATTGTAG 57.174 29.630 0.00 0.00 0.00 2.74
2742 3287 9.607285 GTGTTATATGTTTTCTGTTTCAACGAT 57.393 29.630 0.00 0.00 0.00 3.73
2743 3288 7.794810 CGTGTTATATGTTTTCTGTTTCAACGA 59.205 33.333 0.00 0.00 0.00 3.85
2744 3289 7.794810 TCGTGTTATATGTTTTCTGTTTCAACG 59.205 33.333 0.00 0.00 0.00 4.10
2745 3290 8.996988 TCGTGTTATATGTTTTCTGTTTCAAC 57.003 30.769 0.00 0.00 0.00 3.18
2758 3303 9.554724 GTTTCACATGATTTTCGTGTTATATGT 57.445 29.630 0.00 0.00 43.56 2.29
2759 3304 9.553418 TGTTTCACATGATTTTCGTGTTATATG 57.447 29.630 0.00 0.00 43.56 1.78
2760 3305 9.773328 CTGTTTCACATGATTTTCGTGTTATAT 57.227 29.630 0.00 0.00 43.56 0.86
2761 3306 8.779303 ACTGTTTCACATGATTTTCGTGTTATA 58.221 29.630 0.00 0.00 43.56 0.98
2762 3307 7.591057 CACTGTTTCACATGATTTTCGTGTTAT 59.409 33.333 0.00 0.00 43.56 1.89
2763 3308 6.909895 CACTGTTTCACATGATTTTCGTGTTA 59.090 34.615 0.00 0.00 43.56 2.41
2764 3309 5.743398 CACTGTTTCACATGATTTTCGTGTT 59.257 36.000 0.00 0.00 43.56 3.32
2765 3310 5.065859 TCACTGTTTCACATGATTTTCGTGT 59.934 36.000 0.00 0.00 46.70 4.49
2766 3311 5.509771 TCACTGTTTCACATGATTTTCGTG 58.490 37.500 0.00 0.00 39.24 4.35
2767 3312 5.527214 TCTCACTGTTTCACATGATTTTCGT 59.473 36.000 0.00 0.00 0.00 3.85
2768 3313 5.989249 TCTCACTGTTTCACATGATTTTCG 58.011 37.500 0.00 0.00 0.00 3.46
2769 3314 6.805271 CCATCTCACTGTTTCACATGATTTTC 59.195 38.462 0.00 0.00 0.00 2.29
2770 3315 6.491062 TCCATCTCACTGTTTCACATGATTTT 59.509 34.615 0.00 0.00 0.00 1.82
2771 3316 6.005823 TCCATCTCACTGTTTCACATGATTT 58.994 36.000 0.00 0.00 0.00 2.17
2772 3317 5.413833 GTCCATCTCACTGTTTCACATGATT 59.586 40.000 0.00 0.00 0.00 2.57
2773 3318 4.940046 GTCCATCTCACTGTTTCACATGAT 59.060 41.667 0.00 0.00 0.00 2.45
2774 3319 4.318332 GTCCATCTCACTGTTTCACATGA 58.682 43.478 0.00 0.00 0.00 3.07
2775 3320 3.438087 GGTCCATCTCACTGTTTCACATG 59.562 47.826 0.00 0.00 0.00 3.21
2776 3321 3.328931 AGGTCCATCTCACTGTTTCACAT 59.671 43.478 0.00 0.00 0.00 3.21
2777 3322 2.705658 AGGTCCATCTCACTGTTTCACA 59.294 45.455 0.00 0.00 0.00 3.58
2778 3323 3.409026 AGGTCCATCTCACTGTTTCAC 57.591 47.619 0.00 0.00 0.00 3.18
2779 3324 3.515502 CCTAGGTCCATCTCACTGTTTCA 59.484 47.826 0.00 0.00 0.00 2.69
2780 3325 3.118592 CCCTAGGTCCATCTCACTGTTTC 60.119 52.174 8.29 0.00 0.00 2.78
2781 3326 2.840651 CCCTAGGTCCATCTCACTGTTT 59.159 50.000 8.29 0.00 0.00 2.83
2782 3327 2.472029 CCCTAGGTCCATCTCACTGTT 58.528 52.381 8.29 0.00 0.00 3.16
2783 3328 1.343478 CCCCTAGGTCCATCTCACTGT 60.343 57.143 8.29 0.00 0.00 3.55
2784 3329 1.343478 ACCCCTAGGTCCATCTCACTG 60.343 57.143 8.29 0.00 46.45 3.66
2785 3330 1.019650 ACCCCTAGGTCCATCTCACT 58.980 55.000 8.29 0.00 46.45 3.41
2786 3331 3.637065 ACCCCTAGGTCCATCTCAC 57.363 57.895 8.29 0.00 46.45 3.51
2796 3341 5.993748 TGAAATTTGCTTTAACCCCTAGG 57.006 39.130 0.06 0.06 40.04 3.02
2797 3342 8.093927 TCATTTGAAATTTGCTTTAACCCCTAG 58.906 33.333 0.00 0.00 0.00 3.02
2798 3343 7.967908 TCATTTGAAATTTGCTTTAACCCCTA 58.032 30.769 0.00 0.00 0.00 3.53
2799 3344 6.836242 TCATTTGAAATTTGCTTTAACCCCT 58.164 32.000 0.00 0.00 0.00 4.79
2800 3345 7.390162 TGATCATTTGAAATTTGCTTTAACCCC 59.610 33.333 0.00 0.00 0.00 4.95
2801 3346 8.321650 TGATCATTTGAAATTTGCTTTAACCC 57.678 30.769 0.00 0.00 0.00 4.11
2802 3347 7.959109 GCTGATCATTTGAAATTTGCTTTAACC 59.041 33.333 0.00 0.00 0.00 2.85
2803 3348 7.959109 GGCTGATCATTTGAAATTTGCTTTAAC 59.041 33.333 0.00 0.00 0.00 2.01
2804 3349 7.148606 CGGCTGATCATTTGAAATTTGCTTTAA 60.149 33.333 0.00 0.00 0.00 1.52
2805 3350 6.310956 CGGCTGATCATTTGAAATTTGCTTTA 59.689 34.615 0.00 0.00 0.00 1.85
2806 3351 5.121142 CGGCTGATCATTTGAAATTTGCTTT 59.879 36.000 0.00 0.00 0.00 3.51
2807 3352 4.628333 CGGCTGATCATTTGAAATTTGCTT 59.372 37.500 0.00 0.00 0.00 3.91
2808 3353 4.178540 CGGCTGATCATTTGAAATTTGCT 58.821 39.130 0.00 0.00 0.00 3.91
2809 3354 3.928375 ACGGCTGATCATTTGAAATTTGC 59.072 39.130 0.00 0.00 0.00 3.68
2810 3355 4.925054 ACACGGCTGATCATTTGAAATTTG 59.075 37.500 0.00 0.00 0.00 2.32
2811 3356 4.925054 CACACGGCTGATCATTTGAAATTT 59.075 37.500 0.00 0.00 0.00 1.82
2812 3357 4.487948 CACACGGCTGATCATTTGAAATT 58.512 39.130 0.00 0.00 0.00 1.82
2813 3358 3.674138 GCACACGGCTGATCATTTGAAAT 60.674 43.478 0.00 0.00 40.25 2.17
2814 3359 2.351641 GCACACGGCTGATCATTTGAAA 60.352 45.455 0.00 0.00 40.25 2.69
2815 3360 1.199789 GCACACGGCTGATCATTTGAA 59.800 47.619 0.00 0.00 40.25 2.69
2816 3361 0.804364 GCACACGGCTGATCATTTGA 59.196 50.000 0.00 0.00 40.25 2.69
2817 3362 0.522626 TGCACACGGCTGATCATTTG 59.477 50.000 0.00 0.00 45.15 2.32
2818 3363 0.806868 CTGCACACGGCTGATCATTT 59.193 50.000 0.00 0.00 43.53 2.32
2819 3364 0.321919 ACTGCACACGGCTGATCATT 60.322 50.000 0.00 0.00 43.53 2.57
2820 3365 1.022982 CACTGCACACGGCTGATCAT 61.023 55.000 0.00 0.00 43.53 2.45
2821 3366 1.668793 CACTGCACACGGCTGATCA 60.669 57.895 0.00 0.00 43.53 2.92
2822 3367 0.950555 TTCACTGCACACGGCTGATC 60.951 55.000 0.00 0.00 43.53 2.92
2823 3368 0.321919 ATTCACTGCACACGGCTGAT 60.322 50.000 0.00 0.00 43.53 2.90
2824 3369 0.534877 AATTCACTGCACACGGCTGA 60.535 50.000 0.00 0.00 43.53 4.26
2825 3370 0.311790 AAATTCACTGCACACGGCTG 59.688 50.000 0.00 0.00 45.15 4.85
2826 3371 0.311790 CAAATTCACTGCACACGGCT 59.688 50.000 0.00 0.00 45.15 5.52
2827 3372 1.277495 GCAAATTCACTGCACACGGC 61.277 55.000 0.00 0.00 45.13 5.68
2828 3373 0.664166 GGCAAATTCACTGCACACGG 60.664 55.000 3.19 0.00 41.78 4.94
2829 3374 0.030504 TGGCAAATTCACTGCACACG 59.969 50.000 3.19 0.00 41.78 4.49
2830 3375 2.222007 TTGGCAAATTCACTGCACAC 57.778 45.000 0.00 0.00 41.78 3.82
2831 3376 2.975732 TTTGGCAAATTCACTGCACA 57.024 40.000 8.93 0.00 41.78 4.57
2832 3377 4.816786 AATTTTGGCAAATTCACTGCAC 57.183 36.364 14.29 0.00 38.02 4.57
2840 3385 9.628746 GCTTTTTATGATGAATTTTGGCAAATT 57.371 25.926 14.29 7.55 43.97 1.82
2841 3386 9.016438 AGCTTTTTATGATGAATTTTGGCAAAT 57.984 25.926 14.29 0.00 33.72 2.32
2842 3387 8.393671 AGCTTTTTATGATGAATTTTGGCAAA 57.606 26.923 8.93 8.93 0.00 3.68
2843 3388 7.119553 GGAGCTTTTTATGATGAATTTTGGCAA 59.880 33.333 0.00 0.00 0.00 4.52
2844 3389 6.594937 GGAGCTTTTTATGATGAATTTTGGCA 59.405 34.615 0.00 0.00 0.00 4.92
2845 3390 6.594937 TGGAGCTTTTTATGATGAATTTTGGC 59.405 34.615 0.00 0.00 0.00 4.52
2846 3391 8.550710 TTGGAGCTTTTTATGATGAATTTTGG 57.449 30.769 0.00 0.00 0.00 3.28
2847 3392 9.815936 GTTTGGAGCTTTTTATGATGAATTTTG 57.184 29.630 0.00 0.00 0.00 2.44
2848 3393 9.558396 TGTTTGGAGCTTTTTATGATGAATTTT 57.442 25.926 0.00 0.00 0.00 1.82
2849 3394 9.729281 ATGTTTGGAGCTTTTTATGATGAATTT 57.271 25.926 0.00 0.00 0.00 1.82
2850 3395 9.158233 CATGTTTGGAGCTTTTTATGATGAATT 57.842 29.630 0.00 0.00 0.00 2.17
2851 3396 8.533657 TCATGTTTGGAGCTTTTTATGATGAAT 58.466 29.630 0.00 0.00 0.00 2.57
2852 3397 7.894708 TCATGTTTGGAGCTTTTTATGATGAA 58.105 30.769 0.00 0.00 0.00 2.57
2853 3398 7.465353 TCATGTTTGGAGCTTTTTATGATGA 57.535 32.000 0.00 0.00 0.00 2.92
2854 3399 8.712285 ATTCATGTTTGGAGCTTTTTATGATG 57.288 30.769 0.00 0.00 0.00 3.07
2855 3400 9.807649 GTATTCATGTTTGGAGCTTTTTATGAT 57.192 29.630 0.00 0.00 0.00 2.45
2856 3401 8.801299 TGTATTCATGTTTGGAGCTTTTTATGA 58.199 29.630 0.00 0.00 0.00 2.15
2857 3402 8.984891 TGTATTCATGTTTGGAGCTTTTTATG 57.015 30.769 0.00 0.00 0.00 1.90
2892 3437 9.405587 CGGTTTGTATTTTCATTGAGTGTAAAT 57.594 29.630 0.00 0.00 39.91 1.40
2893 3438 8.622157 TCGGTTTGTATTTTCATTGAGTGTAAA 58.378 29.630 0.00 0.00 32.65 2.01
2894 3439 8.155821 TCGGTTTGTATTTTCATTGAGTGTAA 57.844 30.769 0.00 0.00 0.00 2.41
2895 3440 7.731882 TCGGTTTGTATTTTCATTGAGTGTA 57.268 32.000 0.00 0.00 0.00 2.90
2896 3441 6.627395 TCGGTTTGTATTTTCATTGAGTGT 57.373 33.333 0.00 0.00 0.00 3.55
2897 3442 7.271223 GTGATCGGTTTGTATTTTCATTGAGTG 59.729 37.037 0.00 0.00 0.00 3.51
2898 3443 7.305474 GTGATCGGTTTGTATTTTCATTGAGT 58.695 34.615 0.00 0.00 0.00 3.41
2899 3444 6.747280 GGTGATCGGTTTGTATTTTCATTGAG 59.253 38.462 0.00 0.00 0.00 3.02
2900 3445 6.432783 AGGTGATCGGTTTGTATTTTCATTGA 59.567 34.615 0.00 0.00 0.00 2.57
2901 3446 6.527722 CAGGTGATCGGTTTGTATTTTCATTG 59.472 38.462 0.00 0.00 0.00 2.82
2902 3447 6.432783 TCAGGTGATCGGTTTGTATTTTCATT 59.567 34.615 0.00 0.00 0.00 2.57
2903 3448 5.943416 TCAGGTGATCGGTTTGTATTTTCAT 59.057 36.000 0.00 0.00 0.00 2.57
2904 3449 5.309638 TCAGGTGATCGGTTTGTATTTTCA 58.690 37.500 0.00 0.00 0.00 2.69
2905 3450 5.873179 TCAGGTGATCGGTTTGTATTTTC 57.127 39.130 0.00 0.00 0.00 2.29
2906 3451 5.334569 CGTTCAGGTGATCGGTTTGTATTTT 60.335 40.000 3.04 0.00 34.61 1.82
2907 3452 4.153475 CGTTCAGGTGATCGGTTTGTATTT 59.847 41.667 3.04 0.00 34.61 1.40
2908 3453 3.682858 CGTTCAGGTGATCGGTTTGTATT 59.317 43.478 3.04 0.00 34.61 1.89
2909 3454 3.259064 CGTTCAGGTGATCGGTTTGTAT 58.741 45.455 3.04 0.00 34.61 2.29
2910 3455 2.610976 CCGTTCAGGTGATCGGTTTGTA 60.611 50.000 17.68 0.00 46.66 2.41
2911 3456 1.508632 CGTTCAGGTGATCGGTTTGT 58.491 50.000 3.04 0.00 34.61 2.83
2912 3457 0.796312 CCGTTCAGGTGATCGGTTTG 59.204 55.000 17.68 0.00 46.66 2.93
2913 3458 3.226884 CCGTTCAGGTGATCGGTTT 57.773 52.632 17.68 0.00 46.66 3.27
2917 3462 2.293677 TCATTCCGTTCAGGTGATCG 57.706 50.000 3.88 3.88 41.99 3.69
2918 3463 4.209288 CGTTATCATTCCGTTCAGGTGATC 59.791 45.833 0.00 0.00 37.10 2.92
2919 3464 4.119862 CGTTATCATTCCGTTCAGGTGAT 58.880 43.478 0.00 0.00 38.69 3.06
2920 3465 3.056393 ACGTTATCATTCCGTTCAGGTGA 60.056 43.478 0.00 0.00 41.99 4.02
2921 3466 3.259064 ACGTTATCATTCCGTTCAGGTG 58.741 45.455 0.00 0.00 41.99 4.00
2922 3467 3.604875 ACGTTATCATTCCGTTCAGGT 57.395 42.857 0.00 0.00 41.99 4.00
2923 3468 4.928601 TCTACGTTATCATTCCGTTCAGG 58.071 43.478 0.00 0.00 42.97 3.86
2924 3469 5.977725 ACATCTACGTTATCATTCCGTTCAG 59.022 40.000 0.00 0.00 36.12 3.02
2925 3470 5.746721 CACATCTACGTTATCATTCCGTTCA 59.253 40.000 0.00 0.00 36.12 3.18
2926 3471 5.332355 GCACATCTACGTTATCATTCCGTTC 60.332 44.000 0.00 0.00 36.12 3.95
2927 3472 4.506654 GCACATCTACGTTATCATTCCGTT 59.493 41.667 0.00 0.00 36.12 4.44
2928 3473 4.049186 GCACATCTACGTTATCATTCCGT 58.951 43.478 0.00 0.00 38.53 4.69
2929 3474 4.048504 TGCACATCTACGTTATCATTCCG 58.951 43.478 0.00 0.00 0.00 4.30
2930 3475 5.928839 AGATGCACATCTACGTTATCATTCC 59.071 40.000 11.40 0.00 45.69 3.01
2931 3476 7.413475 AAGATGCACATCTACGTTATCATTC 57.587 36.000 13.32 0.00 46.75 2.67
2932 3477 7.792374 AAAGATGCACATCTACGTTATCATT 57.208 32.000 13.32 0.00 46.75 2.57
2933 3478 7.792374 AAAAGATGCACATCTACGTTATCAT 57.208 32.000 13.32 0.00 46.75 2.45
2934 3479 7.609760 AAAAAGATGCACATCTACGTTATCA 57.390 32.000 13.32 0.00 46.75 2.15
2935 3480 8.818057 ACTAAAAAGATGCACATCTACGTTATC 58.182 33.333 13.32 0.00 46.75 1.75
2936 3481 8.604035 CACTAAAAAGATGCACATCTACGTTAT 58.396 33.333 13.32 0.00 46.75 1.89
2937 3482 7.601130 ACACTAAAAAGATGCACATCTACGTTA 59.399 33.333 13.32 10.56 46.75 3.18
2938 3483 6.426937 ACACTAAAAAGATGCACATCTACGTT 59.573 34.615 13.32 10.06 46.75 3.99
2939 3484 5.932303 ACACTAAAAAGATGCACATCTACGT 59.068 36.000 13.32 0.00 46.75 3.57
2940 3485 6.408858 ACACTAAAAAGATGCACATCTACG 57.591 37.500 13.32 3.98 46.75 3.51
2941 3486 8.251750 TGTACACTAAAAAGATGCACATCTAC 57.748 34.615 13.32 5.69 46.75 2.59
2942 3487 8.840833 TTGTACACTAAAAAGATGCACATCTA 57.159 30.769 13.32 0.00 46.75 1.98
2944 3489 8.970691 AATTGTACACTAAAAAGATGCACATC 57.029 30.769 0.00 2.28 38.09 3.06
2959 3504 8.391106 GCTTCAAATCGAGATAAATTGTACACT 58.609 33.333 0.00 0.00 0.00 3.55
2960 3505 8.175069 TGCTTCAAATCGAGATAAATTGTACAC 58.825 33.333 0.00 0.00 0.00 2.90
2961 3506 8.175069 GTGCTTCAAATCGAGATAAATTGTACA 58.825 33.333 0.00 0.00 0.00 2.90
2962 3507 7.640240 GGTGCTTCAAATCGAGATAAATTGTAC 59.360 37.037 0.00 0.00 0.00 2.90
2963 3508 7.465379 CGGTGCTTCAAATCGAGATAAATTGTA 60.465 37.037 0.00 0.00 0.00 2.41
2964 3509 6.555315 GGTGCTTCAAATCGAGATAAATTGT 58.445 36.000 0.00 0.00 0.00 2.71
2965 3510 5.678483 CGGTGCTTCAAATCGAGATAAATTG 59.322 40.000 0.00 0.00 0.00 2.32
2966 3511 5.354234 ACGGTGCTTCAAATCGAGATAAATT 59.646 36.000 0.00 0.00 0.00 1.82
2967 3512 4.876107 ACGGTGCTTCAAATCGAGATAAAT 59.124 37.500 0.00 0.00 0.00 1.40
2968 3513 4.250464 ACGGTGCTTCAAATCGAGATAAA 58.750 39.130 0.00 0.00 0.00 1.40
2969 3514 3.857052 ACGGTGCTTCAAATCGAGATAA 58.143 40.909 0.00 0.00 0.00 1.75
2970 3515 3.520290 ACGGTGCTTCAAATCGAGATA 57.480 42.857 0.00 0.00 0.00 1.98
2971 3516 2.386661 ACGGTGCTTCAAATCGAGAT 57.613 45.000 0.00 0.00 0.00 2.75
2972 3517 1.798223 CAACGGTGCTTCAAATCGAGA 59.202 47.619 0.00 0.00 0.00 4.04
2973 3518 1.531149 ACAACGGTGCTTCAAATCGAG 59.469 47.619 0.00 0.00 0.00 4.04
2974 3519 1.588674 ACAACGGTGCTTCAAATCGA 58.411 45.000 0.00 0.00 0.00 3.59
2975 3520 3.740044 ATACAACGGTGCTTCAAATCG 57.260 42.857 0.00 0.00 0.00 3.34
2976 3521 6.604735 ATCTATACAACGGTGCTTCAAATC 57.395 37.500 0.00 0.00 0.00 2.17
2977 3522 7.985184 TCTAATCTATACAACGGTGCTTCAAAT 59.015 33.333 0.00 0.00 0.00 2.32
2978 3523 7.324935 TCTAATCTATACAACGGTGCTTCAAA 58.675 34.615 0.00 0.00 0.00 2.69
2979 3524 6.869695 TCTAATCTATACAACGGTGCTTCAA 58.130 36.000 0.00 0.00 0.00 2.69
2980 3525 6.459670 TCTAATCTATACAACGGTGCTTCA 57.540 37.500 0.00 0.00 0.00 3.02
2981 3526 6.074994 CGTTCTAATCTATACAACGGTGCTTC 60.075 42.308 0.00 0.00 36.93 3.86
2982 3527 5.747197 CGTTCTAATCTATACAACGGTGCTT 59.253 40.000 0.00 0.00 36.93 3.91
2983 3528 5.279384 CGTTCTAATCTATACAACGGTGCT 58.721 41.667 0.00 0.00 36.93 4.40
2984 3529 5.556690 CGTTCTAATCTATACAACGGTGC 57.443 43.478 0.00 0.00 36.93 5.01
2988 3533 5.824429 TGTCCCGTTCTAATCTATACAACG 58.176 41.667 0.00 0.00 39.59 4.10
2989 3534 7.222224 CACTTGTCCCGTTCTAATCTATACAAC 59.778 40.741 0.00 0.00 0.00 3.32
2990 3535 7.123098 TCACTTGTCCCGTTCTAATCTATACAA 59.877 37.037 0.00 0.00 0.00 2.41
2991 3536 6.604396 TCACTTGTCCCGTTCTAATCTATACA 59.396 38.462 0.00 0.00 0.00 2.29
2992 3537 7.035840 TCACTTGTCCCGTTCTAATCTATAC 57.964 40.000 0.00 0.00 0.00 1.47
2993 3538 7.201884 CCTTCACTTGTCCCGTTCTAATCTATA 60.202 40.741 0.00 0.00 0.00 1.31
2994 3539 6.407074 CCTTCACTTGTCCCGTTCTAATCTAT 60.407 42.308 0.00 0.00 0.00 1.98
2995 3540 5.105473 CCTTCACTTGTCCCGTTCTAATCTA 60.105 44.000 0.00 0.00 0.00 1.98
2996 3541 4.322801 CCTTCACTTGTCCCGTTCTAATCT 60.323 45.833 0.00 0.00 0.00 2.40
2997 3542 3.933332 CCTTCACTTGTCCCGTTCTAATC 59.067 47.826 0.00 0.00 0.00 1.75
2998 3543 3.581332 TCCTTCACTTGTCCCGTTCTAAT 59.419 43.478 0.00 0.00 0.00 1.73
2999 3544 2.967201 TCCTTCACTTGTCCCGTTCTAA 59.033 45.455 0.00 0.00 0.00 2.10
3000 3545 2.561419 CTCCTTCACTTGTCCCGTTCTA 59.439 50.000 0.00 0.00 0.00 2.10
3001 3546 1.344763 CTCCTTCACTTGTCCCGTTCT 59.655 52.381 0.00 0.00 0.00 3.01
3002 3547 1.343465 TCTCCTTCACTTGTCCCGTTC 59.657 52.381 0.00 0.00 0.00 3.95
3003 3548 1.420430 TCTCCTTCACTTGTCCCGTT 58.580 50.000 0.00 0.00 0.00 4.44
3004 3549 1.420430 TTCTCCTTCACTTGTCCCGT 58.580 50.000 0.00 0.00 0.00 5.28
3005 3550 2.770164 ATTCTCCTTCACTTGTCCCG 57.230 50.000 0.00 0.00 0.00 5.14
3006 3551 3.933332 CGTAATTCTCCTTCACTTGTCCC 59.067 47.826 0.00 0.00 0.00 4.46
3007 3552 3.933332 CCGTAATTCTCCTTCACTTGTCC 59.067 47.826 0.00 0.00 0.00 4.02
3008 3553 3.371285 GCCGTAATTCTCCTTCACTTGTC 59.629 47.826 0.00 0.00 0.00 3.18
3009 3554 3.244422 TGCCGTAATTCTCCTTCACTTGT 60.244 43.478 0.00 0.00 0.00 3.16
3010 3555 3.125316 GTGCCGTAATTCTCCTTCACTTG 59.875 47.826 0.00 0.00 0.00 3.16
3011 3556 3.244422 TGTGCCGTAATTCTCCTTCACTT 60.244 43.478 0.00 0.00 0.00 3.16
3012 3557 2.301870 TGTGCCGTAATTCTCCTTCACT 59.698 45.455 0.00 0.00 0.00 3.41
3013 3558 2.695359 TGTGCCGTAATTCTCCTTCAC 58.305 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.