>input_sequence_62592
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---------------------------------AGGACGCCCAGTCACCGTCGGATGAGCTGAGCTGAGGGTGTTCGGAT
GGCGTCGCCGCGGCGTAACGGGGATCA------GGCGGCGGCGGGGGGACGGAGGAAGGAGTCGAGGCGGCTGGGGACGC
TCCTACTGGTGCTGCGGGTGGCGGCGCTGTGCTTTAGCCTTGCGGCGGCGGTGTTCGCGGCGACGGACGGCGCCGTGCTG
CGGCTGGCGCCGTTCAGGTTCCTGCTGGCGGCGAACGCGATCCTGGCGGTGTACTCGGTGTTCGAGGTCGCCGCGGCGGC
GTGGGAGGTGGCCAAGGGCGCCACGCTGCTCCCGGAGGCCTTGCAGCTCTGGTTCGACTTCGGCCACGACCAGGTAACCA
ATTAACCAGCGCCTACTTGCTGTAATTACACGCAAGCTGCATCTGGTCCATCGACCACACACATGGAGTTAGTTAACTAA
TTCCTGAGTTGTTAATTTGATCGTGTGTGCGTGCGCTCCAGGGTTTCGGGTACATGGCGCTAGCCGCCGCGGCGGCGGCG
GCGCGGGAAGCGGCGTTGTGCGGCGGAGGCCAGGAGCGGAATATCAGCAGCACGGCGTGCCTGCAGAGCGACATCGCCGT
GGGGCTCGGGTTCGCGGCGTTCGCGTTCCTGGCGCTGGCGGCGCTCGCGACGGGGTTCCGGCTCGTCCGCTTCCTCGCCA
CCGGTTCCCGGCTCCCGGCGGGGG------CCTCCTCCCCGTATTGACCGGCGTGCGTGGGGCCATGGAGCATACG-TCC
GTACGTAGTAGCTACTGGTGCGATGAACTGATCGGAGTGCGGCTAGCCAGAGCACTTCGATTTTTCGGTGGTTTTGATCG
ATCGGTGGGGTGATTATTACAGTATGCACTACGCT--ATTAGCTCGACAATATTAGATGGA--TGTGTGTGATGTGTACG
CAAGATTCTGCGGGATATACTACGACTGAAACATAGGCGGTGCATGACGAGTTTGTTTTTTCATTTTGGTTTTGCTATAT
CTGGGG------------------------------------TTTTTTGCCGAGAATTTGGGGAGCTTCATTGCAATAAT
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>chr5D_1_TraesCS5D01G095200
CAGGATCCTGGTAGAGCGAAGCACACTATACTCCCTAAAAGTTGTTAGACATAGACCCTACAATTGTCTTAGGGTATCCC
GTTTTAGGGATTTTTAGGGAGATGCTCTTAGGGCCATATT--T-TTTCCTGT---CTTTGCATGCACCTTCTATCACTTT
AAATATATT-TTTT-GGAAGATCATCTAATGTGTCATGGTTGCAAATTCATGTGCTTTGATTTTCTAGACGCCATAACAT
CCTAATCTTATTTTCTGTTTTCATGTTTATAGAATCATGAATTCTAAAACAGCGCAC---TAGATATTTTTCATGTATTA
CATGCACATTCTCTCTTCTTCTCTCTTCAAGTTCGTGGAGAGGATCCAAAGGAC--TTTTTTTGGCTTCCATAGAAGAAT
CTAGGAAATAATAAT-----------------------------------------------------------------
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-------------------------------------------------------AAGTCCCGTTTAGTTAGTTTTTCCT
AGCTTAATAGTTCATTTTTCACGAAAAAAAAACTT------TATTGAACTGTTAGACAATAAGTGAGCTTAAACGGGATT
TAAACAGGACCCGGTTTACATCCATGAAAGTATCTCAATTTCATGCA---TGTCTTTATTTGTTTGCTTTAGGATACAGC
ATGCTTCTAAGAGTGCTTATCAACAATCTCCATAATTTTACAGCCCAGAAATTTCACGGGATTTCGGCATGAACGTCAGG
CAAACCAGCTCGTTTTGCTATGGAAAGTGAAGAAGAATCCGTGTCCGAAAATGGGACCAGAGGGAATTTGTTGGATCGTT
CGTACGTGTGGCGGTGCTCAAGTGGAAAATTAGATAGCATCACAAGCTCCGAACAGTCCACATTGATGGCGCCATTAATT
CACTCACATGTCCACACCTAACACCTCGCCACACCTGGCCATGGCAGCTCGGCTTTAGACAACCTTTGGCTTATCCGAGC
CTGCCGTGTGGGTCCCATGC-----------CCGCCACGTCGGCGCCTAAGGCTCGCCTCTCCCGTGATCCCAGGCCGTC
TATAAAGCCGGGAGGAGGCTACGTGCCCAGTTCAGGACGCCCAGTCACCGTCGGATGAGCTGAGCTGAGGGTGTTCGGAT
GGCGTCGCCGCGGCGTAACGGGGATCA------GGCGGCGGCGGGGGGACGGAGGAAGGAGTCGAGGCGGCTGGGGACGC
TCCTACTGGTGCTGCGGGTGGCGGCGCTGTGCTTTAGCCTTGCGGCGGCGGTGTTCGCGGCGACGGACGGCGCCGTGCTG
CGGCTGGCGCCGTTCAGGTTCCTGCTGGCGGCGAACGCGATCCTGGCGGTGTACTCGGTGTTCGAGGTCGCCGCGGCGGC
GTGGGAGGTGGCCAAGGGCGCCACGCTGCTCCCGGAGGCCTTGCAGCTCTGGTTCGACTTCGGCCACGACCAGGTAACCA
ATTAACCAGCGCCTACTTGCTGTAATTACACGCAAGCTGCATCTGGTCCATCGACCACACACATGGAGTTAGTTAACTAA
TTCCTGAGTTGTTAATTTGATCGTGTGTGCGTGCGCTCCAGGGTTTCGGGTACATGGCGCTAGCCGCCGCGGCGGCGGCG
GCGCGGGAAGCGGCGTTGTGCGGCGGAGGCCAGGAGCGGAATATCAGCAGCACGGCGTGCCTGCAGAGCGACATCGCCGT
GGGGCTCGGGTTCGCGGCGTTCGCGTTCCTGGCGCTGGCGGCGCTCGCGACGGGGTTCCGGCTCGTCCGCTTCCTCGCCA
CCGGTTCCCGGCTCCCGGCGGGGG------CCTCCTCCCCGTATTGACCGGCGTGCGTGGGGCCATGGAGCATACG-TCC
GTACGTAGTAGCTACTGGTGCGATGAACTGATCGGAGTGCGGCTAGCCAGAGCACTTCGATTTTTCGGTGGTTTTGATCG
ATCGGTGGGGTGATTATTACAGTATGCACTACGCT--ATTAGCTCGACAATATTAGATGGA--TGTGTGTGATGTGTACG
CAAGATTCTGCGGGATATACTACGACTGAAACATAGGCGGTGCATGACGAGTTTGTTTTTTCATTTTGGTTTTGCTATAT
CTGGGG------------------------------------TTTTTTGCCGAGAATTTGGGGAGCTTCATTGCAATAAT
AACATTCGATTGCAATTAGCCCTGAAGCTGTAATAAGAAAGGATGAACGTTCATGTGGCCAGCAGTCTAAAACCAACGAG
GAACATGCCTACTTAGCACAAAGTTCCGCCACACTGTTACCATCCTTGGGACATGCCTAACAGAAAAAGCTAAAACTTGC
CGATTTTTCCTCTATTTCATCTAAGATAGACGCCACAGTTGGTTGAGAATTATAACACGAAGACTAGATGTTAACAACCT
CTAAGGAACCCATTTTCATCACCAT-------------------------------------------------------
-------------------GTGCGAGAAGCCTCATAGTTGTGCAAAAATGGCGCCTTCTCAGACTGTCATGGCTTTGGCA
ATAGCTGGATCAATGACCCCATTGAAGGGTTTACTCCAATCTTCCATGAAGGATAGATGGGAGACCGAGTTGCACTA---
CCTCCTCCTCCGCAACGAGCTTCAATGT------------------TGATTTTCTATCTAACATCTGGAGGTCGCCAACA
CTAGCCGCCAGGGATGCTGTGTTGGGACTTTGGCATGCCAGGTATCAACAGATCATCCCGGATTGTCTTCATCGAATGAA
CATATCGCCTGAATGGAATCAGAACGTCGATGCATCTTCTTTATGTACAACTTATCTCGAATCAAAGAACCATTGTGTAG
ATTAGAAGGAATAGGTAA---AGGAGATTAAGAGTGTGCGTACATTTGTGCAGCCTGATAGGAAGATACAAATCTACTCG
ACTACAATCGTTGAAACAGAAAACATATAACACGAAAATCATGTGAAACAGTGAGATGGACCTAGGGGTTAAAGCAAATT
TCAAATGATCAGCCGTGTGCAGTGAATTTGCCAAAATTCATCATAAAAAGCTCCAAACATGAATACAATATTATACATTT
ACACTCAATGAAAATACAAACCGATCACCTGAACGGAATGATAACGTAGATGTGCATCTTTTTAGTGTACAATTTATCTC
GATTTGAAGCACCGTTGTATAGATTAGAACGGGACAAGTGAAGGAGAATTACGGCACA
>chr5B_3
--GGATTCTGGTAGAGCGAAGCACACTGTAATTCCTAAAAGTTGTTAGACATTGACCCTAAAATTGTTTTAGGGTCTCCC
ATTTTAGGGATTTTTAGGGAGATGCTCTTAGGGCCATATT--TTTTTCCTGCAGACTTTGCATGCACCTTCTATCACTTT
AAATATACTGTTTT-GGAATATCATCTAATGTGTCACGGCTGCAAATTCATGTGCTTTGGTTTCCTAGATGCCATGCCAT
CCAAATCTTACTTTCCGTTTTCATGTTCATAGAATCATGAATTCTAAAACAGCGCAC---TAGATATTTT-CATGTATTA
CATGCATATTCTCTCTTCTTCCTTCTTCAAGTACGTGGAGAGCATCTAA------TTTTTTTTGGCTTCCATAGAAGAAT
CTAAGAAATAATAATATGTACTAACTCAGCAACAATTAAGAGGGTGTTTGTTTCCAGGGACTTATTGGCTTAGGGACTTA
AAAAAATCTCTATAAGTCCCATCTAAACCAAACAGAAGGACTTATAGGGACTTAAAGTGGGCATTTGGGACTTATGAAAT
AAGACTCTCAAGGAGGGATTTATAGGGACTTATATTTGTAATATGGTCTTATAGGGACTTATAAGTACCAAGAACCAAAC
AGGTAGGGACTTTATAAGGACTTGGGACTTATAAGTTGGGACTAAAAAAAGTCCTAAGACTTATGAACCAAACAGGGCCT
AATATGAATTTGTGGAAGTATCTAGGGATGTAAATGGCAAATAAATGACACCCGAAAGTCCCGTTTAGTTAGTTT-----
-----GATAGTTCATTTTCCTAAAAAGAATATATGTGAATATATTGAACTGTTAGATAATAAGTGGATTTAAGCGGGATT
TAAACTGTACCCGGTTTACAT-------AGAATCTCAATTTCATGCATCTTGTCTTTATTTGTGTGCTTTAGGACAAGGA
-------------TGCTTATCAACAATCTCCGTAATTTTACAGCCT--AAATTTCACGGGATTTCGGCATGAATGTCAGG
CAAACCAGTTCGTTTTGCTATGGAAAGTGAAGAAGAATCCGTGTCCGAAAATGGGACCAGAGGGAATTTGTTGGATCGTT
CGTACGTGTGGCGGTGCTCAAGTGGAAAATTAGATAGCATCACAAGCTCCGAACAGTCCACATTGATGGCGCCATTAATT
CACTCACATGTCCACACCTAACGCCTCGCCACACCTGGCCATGGCAGCTCGGCTTTACACAACCTTTGGCTCATCCGAGC
CTGCCGTGTGGGTCCCATGCG----------CCGCCACGTAGGCGCCCAAGACTCGCCTCTCCCGTGATCCCAGGCTGTC
TATAAAGCCGGGAGGAGGCTACGTGCGAAGCTCAGGACACCCAGTCACCGTTGGATGAGCTGAGCTTTGGGTGGTCGGAT
GGCGTCGCCGCTGCGTAACGGGGCTCA------G------GCGGGGGGTCGGAGGAAGGAGTCGAGGCGGCTGGGGGCGC
TCCTGCTGGTGCTGCGTGTGGCGGCGCTGTGCTTTAGCCTCGCGGCGGCGGTGCTCGCGGCGACGGACGGCGCCGTGCTG
CGGCTGGCGCCGTTCAGGTTCCTGCTGGCGGCGAACGCGATCGTGGCGGTATACTCGGTGTTCGAGGTCGCCGCGGCGGC
GTGGGAGGTGGCCAAGGGCGCCACGCTGCTCCCGGAGGCCTTGCAGCTCTGGTTCGACTTCGGCCACGACCAGGTAACTA
ATTAACCAGCGCCTACTTGCTGTAATTACACGCAAGTTGCATCTGGTCGATCGACCACACACAAGGAGTTAGTTACCTAA
TTCCGGAGTTGTTAATTTGATCGTGTGTGCGTGCGCTGCAGGGTTTCGGGTACATGGCGCTGGCCGCGGCGGCGGCGGCG
GCGCGGGAAGCGGCGTTGTGCGGCGGAGGCCAGGAGCGGAATATCAGCAGCACGGCGTGCCTGCAGGGCGACATCGCCGT
GGGGCTCGGGTTCGCGGCGTTCGCGTTCCTGGCGCTGGCGGCGCTCGCGACGGGGTTCCGGCTCGTCCGCTTCCTCGCCA
CCGGTTCCCGGCTCCCGGCGGGGACCTCCTCCTCCTCCCCGTATTGACCGGCGCGCGTGGGGCCATGGGGCATACG-TCC
GTACGTAGTAGCTACTCGTGCGATGAACTGATCGGGGTGCGGCTAGCCAGAGCACTTCGATTTTTCGGTGGTTTTGATCG
ATCGGTGGGGTGATTATTACAGTATGCACTACGCT-GATTAGCTCGACACTATTAGATGGATGTGTGTGTGATGTGTACG
CAAGATTCTGCGGGATATACCAG---TGAAACATAGGCGGTGCATGACGAGTTTGTTTTTTCATTTTGGGTTTGCTATAT
CTG-----------------------------------------------------------------------------
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>chr5A_3
--GGATTCTGGTAGAGCGAAGCACACTATAATCCCTAAAAGTTGTTAGACGTTGACCCTACAATTGTTTTAGGGTATCCC
GTTTTAGGGATTTTCAGAGAGATGCTCTTAGGGCCATATTATTTTTTCCTGT---CTTTGCATGCACCTTCTA-------
-AATATATT-TTTGGGGAAGATCATCTAATGTGTCATGGCTGCAAATTCATGTGCTTTGATTTCCAGGACGCCATGACAT
CCAAATCTTTTTTTTCATTTTCATGTTTATAGAATCATGAATTCTCAAACATCGCACTAGTAGATATTTG-CATGTATTA
CATGCACATTCTCTCTTCTTCTCTCCTCAAGTACGTGGAGAGCATCGAAAGGTTTTTTTTTTTGGCTCCTGTAGAAGAAT
CTAGGAAATAATAACACGTACTAACTCAGCGACAATTAG-----------------------------------------
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--TATGAATCGGTGGAAGTATCTAGTGATTTAAAGGGCAAATAAACGGCACCCGCAACTTTCATTTAGTTAGTTTTTGCT
AACTTGATAGTTCATTTTTCACAGAGAATAAACTTT--ATATATTGAACTGCTAGACA-TAAGTGAGCTTAAACGGGATT
TAAACAGGACCCGGTTTACATCCCTGAAAGTATCTCAATTTCATGCATGTTGTCTTTATTTGTGTGCTTTAGGATACAAC
ATGCTTCTAAGAGTGCTTATCAACAATCTCCATAATTTTACAGCCCAGAAGTTTCACGGGATTTCGGCATGAACGTCAGG
CAAACCAGCTCGTTTTGCTATGGAAAGTGAAGAAGAATCTGT--------------------------------------
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>chr5A_692
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---------------------------------AGAATCCGTGTCCGAAAATGGGACCAGAGGGAATTTGTTGGATCGTT
CGTACGTGTGGCGGTGCTCAAGTGGAAAATTAGATAGCATCACAAGCTCCGAACAGGCCACATTGATGGCGCCATTAATT
CACTCACATGTCCACACCTAACACCTCGCCACACCTGGCCATGGCAGCTCGGCTTTACACAACCTTTGGCTCATCCGAGC
CTGCCGTGTGGGTCCGACGCTCCGCCACGCTCCGCCACGTCGGCGCCTAAGGCTCGCCTCTCCCGTGATCACAGGCCGTC
TATAAAGCCGGGAGGAGGCTACGTGCCCAGCTCAGGACGCCCAGTCACCGTCGGATGAGCTGAGCTGAGGGTGTTCGGAT
GGCGTCGCCGCTGCGTAACGGGGATCAGGCGGCG------GCGGGGGGACGGAGGAAGGAGTCGAGGCGGCTGGGGACGC
TCCTCCTGGTGCTGCGGGTGGCGGCGCTGTGCTTTAGCCTCGCGGCGGCGGTGTTCGCGGCGACGGACGGCGCCGTGCTG
CGGCTGGCGCCGTTCAGGTTCCTGCTGGCGGCGAACGCGATCGTGGCGGTATACTCGGTGTTCGAGGTCGCCGCGGCGGC
GTGGGAGGTGGCCAAGGGCGCCACGCTGCTCCCGGAGGCCTTGCAGCTCTGGTTCGACTTCGGCCACGACCAGGTAACCA
ATTAACCAGCGCCTACTTGCTGTAATTACACGCAAGTTGCATCTGGTCGATCGATCACACACATGGAGTTGGTTAACTAA
TTTCGGAGTTGTTCATTCGATCGTGTGTGCGTGCGCTGCAGGGTTTCGGGTACATGGCGCTGGCAGCGGCGGCGGCGGCG
GCGCGGGAAGCGGCGTTGTGCGGCGGAGGCCAGGAGCGGAATATCAGCAGCACGGCGTGCCTGCAGGGCGACATCGCCGT
GGGGCTCGGGTTCGCGGCGTTCGCTTTCCTGGCGCTGGCGGCGCTCGCGACGGGGTTCCGGCTCGTCCGCTTCCTCGCCA
CCGGTTCCCGGCTCCCGGCGGGGG------CCTCCTCCCCGTATTGACCGGCGCGCGTGGGGCCATGGAGCATACTTTCC
GTACGTAGTAGCTACTCGTGCGATGAACTGATCGGAGTGCGGCTAGCCAGAGCACTTCGATTCTTCGGTGGTTTTGATCG
ATCGGTGGGGTGATTATTACAGTATGCACTACGCTTGATTAGCTCGACAATATTAGATGGA--TGTGTGTGATGTGTACG
CAAGATTCTGCGGGATATACCAG---TGAAACATAGGAGGTGCATGACGAGTGTGTTTTTTCATTTTGGGTTTGCTATAT
CTGGCCGGTGGGACTCACCCTCGTTCTTTTTTTTCTGGGGATTTTTTTGCCGAGAATTTGGGGAGCTTCATCGG--TAAT
TACATTCGATTACAATTAGCCCTGAAGCTGTAATAAGAAAGGATGAACGTTCGTGTGGCCAGG------AAACCAACAAG
GAACGTGCCTGCTTAGCACAAAGTTCCGCCACACTGTTACCATCCTTGGGACATGTCTAACAGAAAAA-CTAAAACTTGC
TGATTTTCCCTCTATTTCATATAAGATAGATGCCACAATTGATCAAGAATTATAACGCGAAGATCAAAGGTTAACAACCT
CTAAGCAATCCACTTTCATCACCACGTGCGAGAAGCCTCATAGTTGTGCAAAAATAACGCCTTTTCGAAGTGCCATGACT
TTGGCAATAACTAGATCACGTGCGAGAAGCCTCATAGTTGTGCAAAAATAACGCCTTCTCCAAGTGCCATGACTTTAGCA
ATAACTAGATCAGTGACCCCATCGAAGGGTTTACTCCAAGCTTCCGTGAAGGATAGATGGGA--CCGAGTTGCACCAACT
CCTCCTCTTCCACACCGAGCTTCAATGTTGATTGCGCCGACGATGTTGATTTTCTATCTAACATCCGAACGTCGCCAACA
CTAGCCATCAGGGATGCCGAGTTGGGACTTTGGCATGTCGAGTATCAACAGATCATCGCGGATTGTCTTCGCCGAATGAA
CATATCACCTGAATGGAATCAGAACAT-GATGCATCTTCTTCATGTACAACTTATCTCGAATCAAAGGACCGTTGTGTAG
ATTAGAAGGACAAAGTAAATGAGGAGATTAAGAGTGTGAGTACATT----------------------------------
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>SNPs
SS----S-----------------------S---------------------S--------------S------------
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---------------------------------------S-----------------------S-----------S----
--S------------S------------------------------------------------------S---------
--------------------------------S---------S---S-----SS--------------------------
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-----------------------------------------------------------------------------S--
-S---S----------------S---------------------------------------------------------
-----------------------S---------------------------------------S----------------
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---------------------------------------------------------S-------------S--------
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------------------------------S-------------------------------------------------
-----------S----------------------SSSSSS----------------------------------------
----S-----------------------------------S---------------------------------------
------------------------------------------S-------S-----------------------------
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------------------------------------S-----------S-------------------------------
----S--------------------------------S-----------------------S-----S------------
------------------------------------------------------------------S-------------
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-----------------------------------------------------S--------------------------
----------------S---------------------------------------------------------------
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--------------------S-SSSS-------------------------------------------S----------
----SS-----------------------------------------------------------------S-SSS----
S----------S----------------------------------------S---------SSSSSSS--------S--
----S-----S--------------------------------------------S------------S-----------
S------S------------S---------S------S---S-SS-----------S------SS-S-S-----------
-----S--S---S-----------S-------------------------------------------------------
-------------------------------------------------SS---------SS-S--S----S----S---
---S--S-----S---------S----------------S-----S----------------SS-----------S----
-------S---S--S--------------------------------------------------S-S-S----------
------SS---------S-S-----------------S-SS----------------S------------SS--------
------S------------------S-S-------------S-------------------------S---S--------
----------SS-S------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_904
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----CAGGACCCGGTTTACATCCA--------------------------------------------------------
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>reverse_2345
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------------------------ACTGAAACATAGGCGGTGCA------------------------------------
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>forward_1902
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------------------------------------------GTTTCGGGTACATGGCGCTA------------------
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>reverse_3374
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-------------CGTGTGCAGTGAATTTGCCA-----------------------------------------------
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