Multiple sequence alignment - TraesCS5D01G081500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G081500 chr5D 100.000 2601 0 0 573 3173 82080029 82077429 0.000000e+00 4804.0
1 TraesCS5D01G081500 chr5D 100.000 156 0 0 1 156 82080601 82080446 4.000000e-74 289.0
2 TraesCS5D01G081500 chr5D 90.000 80 7 1 2024 2102 44609374 44609295 5.600000e-18 102.0
3 TraesCS5D01G081500 chr5A 93.212 1871 92 9 573 2408 77797666 77795796 0.000000e+00 2719.0
4 TraesCS5D01G081500 chr5A 86.250 400 40 4 2401 2800 77794990 77794606 1.360000e-113 420.0
5 TraesCS5D01G081500 chr5A 80.986 142 21 3 2022 2163 24796721 24796586 1.200000e-19 108.0
6 TraesCS5D01G081500 chr5A 78.710 155 29 4 1951 2102 35035904 35035751 2.010000e-17 100.0
7 TraesCS5D01G081500 chr5A 97.436 39 1 0 1685 1723 235398074 235398112 2.040000e-07 67.6
8 TraesCS5D01G081500 chr7D 91.798 317 17 6 2863 3173 454093262 454092949 1.750000e-117 433.0
9 TraesCS5D01G081500 chr7D 92.157 306 19 3 2873 3173 548049987 548050292 8.130000e-116 427.0
10 TraesCS5D01G081500 chr3D 91.331 323 14 10 2858 3173 374392349 374392664 2.260000e-116 429.0
11 TraesCS5D01G081500 chr3D 91.720 314 19 7 2867 3173 378773580 378773267 2.260000e-116 429.0
12 TraesCS5D01G081500 chr3D 96.875 32 0 1 1439 1470 493225102 493225132 6.000000e-03 52.8
13 TraesCS5D01G081500 chr3B 92.434 304 16 4 2875 3173 225175054 225175355 8.130000e-116 427.0
14 TraesCS5D01G081500 chr1D 92.131 305 18 5 2871 3173 452692937 452692637 2.930000e-115 425.0
15 TraesCS5D01G081500 chr4A 92.105 304 18 5 2875 3173 85588616 85588314 1.050000e-114 424.0
16 TraesCS5D01G081500 chrUn 91.083 314 22 4 2865 3173 10749095 10748783 1.360000e-113 420.0
17 TraesCS5D01G081500 chrUn 91.083 314 22 4 2865 3173 10764723 10764411 1.360000e-113 420.0
18 TraesCS5D01G081500 chrUn 96.875 32 0 1 1439 1470 324274427 324274397 6.000000e-03 52.8
19 TraesCS5D01G081500 chr5B 72.539 579 116 28 1603 2163 26936489 26935936 7.090000e-32 148.0
20 TraesCS5D01G081500 chr2B 97.059 34 1 0 1682 1715 297015046 297015079 1.230000e-04 58.4
21 TraesCS5D01G081500 chr6D 96.875 32 0 1 1439 1470 335546792 335546762 6.000000e-03 52.8
22 TraesCS5D01G081500 chr6A 96.875 32 0 1 1439 1470 56591874 56591844 6.000000e-03 52.8
23 TraesCS5D01G081500 chr4B 96.875 32 0 1 1439 1470 125785445 125785415 6.000000e-03 52.8
24 TraesCS5D01G081500 chr4B 96.875 32 0 1 1439 1470 125817001 125816971 6.000000e-03 52.8
25 TraesCS5D01G081500 chr2D 96.875 32 0 1 1439 1470 261077153 261077123 6.000000e-03 52.8
26 TraesCS5D01G081500 chr1B 96.875 32 0 1 1439 1470 254615698 254615728 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G081500 chr5D 82077429 82080601 3172 True 2546.5 4804 100.000 1 3173 2 chr5D.!!$R2 3172
1 TraesCS5D01G081500 chr5A 77794606 77797666 3060 True 1569.5 2719 89.731 573 2800 2 chr5A.!!$R3 2227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 914 0.322546 GGACAAATGGCTCCGAACCT 60.323 55.0 0.0 0.0 0.0 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2896 3745 0.034337 GCGGGTTAACTCTCACCACA 59.966 55.0 3.52 0.0 34.36 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.851541 AAACCTTTCTGTAAATTATACGGTCA 57.148 30.769 0.00 0.00 0.00 4.02
44 45 9.457436 AAACCTTTCTGTAAATTATACGGTCAT 57.543 29.630 0.00 0.00 0.00 3.06
45 46 8.658499 ACCTTTCTGTAAATTATACGGTCATC 57.342 34.615 0.00 0.00 0.00 2.92
46 47 8.262227 ACCTTTCTGTAAATTATACGGTCATCA 58.738 33.333 0.00 0.00 0.00 3.07
47 48 9.273016 CCTTTCTGTAAATTATACGGTCATCAT 57.727 33.333 0.00 0.00 0.00 2.45
49 50 9.607988 TTTCTGTAAATTATACGGTCATCATGT 57.392 29.630 0.00 0.00 0.00 3.21
56 57 8.651391 AATTATACGGTCATCATGTAAAACGA 57.349 30.769 8.07 0.00 0.00 3.85
57 58 5.961395 ATACGGTCATCATGTAAAACGAC 57.039 39.130 8.07 0.00 0.00 4.34
58 59 3.921677 ACGGTCATCATGTAAAACGACT 58.078 40.909 8.07 0.00 0.00 4.18
59 60 4.312443 ACGGTCATCATGTAAAACGACTT 58.688 39.130 8.07 0.00 0.00 3.01
60 61 4.753107 ACGGTCATCATGTAAAACGACTTT 59.247 37.500 8.07 0.00 0.00 2.66
61 62 5.237779 ACGGTCATCATGTAAAACGACTTTT 59.762 36.000 8.07 0.00 33.92 2.27
62 63 6.424509 ACGGTCATCATGTAAAACGACTTTTA 59.575 34.615 8.07 0.00 31.74 1.52
63 64 6.735063 CGGTCATCATGTAAAACGACTTTTAC 59.265 38.462 12.21 12.21 46.61 2.01
64 65 7.359765 CGGTCATCATGTAAAACGACTTTTACT 60.360 37.037 17.30 5.72 46.58 2.24
65 66 8.928733 GGTCATCATGTAAAACGACTTTTACTA 58.071 33.333 17.30 8.44 46.58 1.82
66 67 9.953825 GTCATCATGTAAAACGACTTTTACTAG 57.046 33.333 17.30 11.87 46.58 2.57
67 68 9.917129 TCATCATGTAAAACGACTTTTACTAGA 57.083 29.630 17.30 15.13 46.58 2.43
68 69 9.953825 CATCATGTAAAACGACTTTTACTAGAC 57.046 33.333 17.30 0.69 46.58 2.59
69 70 8.219436 TCATGTAAAACGACTTTTACTAGACG 57.781 34.615 17.30 0.00 46.58 4.18
70 71 7.862372 TCATGTAAAACGACTTTTACTAGACGT 59.138 33.333 17.30 0.00 46.58 4.34
76 77 6.744550 ACGACTTTTACTAGACGTTTTGAG 57.255 37.500 0.00 0.00 42.20 3.02
77 78 5.689068 ACGACTTTTACTAGACGTTTTGAGG 59.311 40.000 0.00 0.00 42.20 3.86
78 79 5.118203 CGACTTTTACTAGACGTTTTGAGGG 59.882 44.000 0.00 0.00 0.00 4.30
79 80 5.303165 ACTTTTACTAGACGTTTTGAGGGG 58.697 41.667 0.00 0.00 0.00 4.79
80 81 5.070847 ACTTTTACTAGACGTTTTGAGGGGA 59.929 40.000 0.00 0.00 0.00 4.81
81 82 4.796038 TTACTAGACGTTTTGAGGGGAG 57.204 45.455 0.00 0.00 0.00 4.30
82 83 1.275573 ACTAGACGTTTTGAGGGGAGC 59.724 52.381 0.00 0.00 0.00 4.70
83 84 1.550976 CTAGACGTTTTGAGGGGAGCT 59.449 52.381 0.00 0.00 0.00 4.09
84 85 1.640917 AGACGTTTTGAGGGGAGCTA 58.359 50.000 0.00 0.00 0.00 3.32
85 86 2.188817 AGACGTTTTGAGGGGAGCTAT 58.811 47.619 0.00 0.00 0.00 2.97
86 87 2.572104 AGACGTTTTGAGGGGAGCTATT 59.428 45.455 0.00 0.00 0.00 1.73
87 88 2.678336 GACGTTTTGAGGGGAGCTATTG 59.322 50.000 0.00 0.00 0.00 1.90
88 89 2.017049 CGTTTTGAGGGGAGCTATTGG 58.983 52.381 0.00 0.00 0.00 3.16
89 90 2.355716 CGTTTTGAGGGGAGCTATTGGA 60.356 50.000 0.00 0.00 0.00 3.53
90 91 3.685550 CGTTTTGAGGGGAGCTATTGGAT 60.686 47.826 0.00 0.00 0.00 3.41
91 92 4.281657 GTTTTGAGGGGAGCTATTGGATT 58.718 43.478 0.00 0.00 0.00 3.01
92 93 4.608170 TTTGAGGGGAGCTATTGGATTT 57.392 40.909 0.00 0.00 0.00 2.17
93 94 3.864789 TGAGGGGAGCTATTGGATTTC 57.135 47.619 0.00 0.00 0.00 2.17
94 95 2.443255 TGAGGGGAGCTATTGGATTTCC 59.557 50.000 0.00 0.00 0.00 3.13
95 96 2.713708 GAGGGGAGCTATTGGATTTCCT 59.286 50.000 0.00 0.00 36.82 3.36
96 97 2.713708 AGGGGAGCTATTGGATTTCCTC 59.286 50.000 0.00 0.00 36.82 3.71
97 98 2.713708 GGGGAGCTATTGGATTTCCTCT 59.286 50.000 0.00 0.00 36.82 3.69
98 99 3.139211 GGGGAGCTATTGGATTTCCTCTT 59.861 47.826 0.00 0.00 36.82 2.85
99 100 4.351111 GGGGAGCTATTGGATTTCCTCTTA 59.649 45.833 0.00 0.00 36.82 2.10
100 101 5.513962 GGGGAGCTATTGGATTTCCTCTTAG 60.514 48.000 0.00 0.00 36.82 2.18
101 102 5.000591 GGAGCTATTGGATTTCCTCTTAGC 58.999 45.833 13.50 13.50 38.02 3.09
102 103 5.221823 GGAGCTATTGGATTTCCTCTTAGCT 60.222 44.000 19.38 19.38 44.00 3.32
103 104 5.863965 AGCTATTGGATTTCCTCTTAGCTC 58.136 41.667 16.19 0.36 40.91 4.09
104 105 4.688413 GCTATTGGATTTCCTCTTAGCTCG 59.312 45.833 13.84 0.00 36.46 5.03
105 106 4.762289 ATTGGATTTCCTCTTAGCTCGT 57.238 40.909 0.00 0.00 36.82 4.18
106 107 3.802948 TGGATTTCCTCTTAGCTCGTC 57.197 47.619 0.00 0.00 36.82 4.20
107 108 3.096852 TGGATTTCCTCTTAGCTCGTCA 58.903 45.455 0.00 0.00 36.82 4.35
108 109 3.513912 TGGATTTCCTCTTAGCTCGTCAA 59.486 43.478 0.00 0.00 36.82 3.18
109 110 4.116238 GGATTTCCTCTTAGCTCGTCAAG 58.884 47.826 0.00 0.00 0.00 3.02
110 111 4.382147 GGATTTCCTCTTAGCTCGTCAAGT 60.382 45.833 0.00 0.00 0.00 3.16
111 112 4.602340 TTTCCTCTTAGCTCGTCAAGTT 57.398 40.909 0.00 0.00 0.00 2.66
112 113 4.602340 TTCCTCTTAGCTCGTCAAGTTT 57.398 40.909 0.00 0.00 0.00 2.66
113 114 4.602340 TCCTCTTAGCTCGTCAAGTTTT 57.398 40.909 0.00 0.00 0.00 2.43
114 115 4.957296 TCCTCTTAGCTCGTCAAGTTTTT 58.043 39.130 0.00 0.00 0.00 1.94
139 140 7.833285 TTTTTGGTTAGGCAATCTTACTCTT 57.167 32.000 0.00 0.00 0.00 2.85
140 141 7.833285 TTTTGGTTAGGCAATCTTACTCTTT 57.167 32.000 0.00 0.00 0.00 2.52
141 142 7.833285 TTTGGTTAGGCAATCTTACTCTTTT 57.167 32.000 0.00 0.00 0.00 2.27
142 143 7.833285 TTGGTTAGGCAATCTTACTCTTTTT 57.167 32.000 0.00 0.00 0.00 1.94
623 624 3.798954 GAGCGGGCGAGGATGAAGG 62.799 68.421 0.00 0.00 0.00 3.46
655 656 1.918293 ATCAGCAACCTCCCCGACA 60.918 57.895 0.00 0.00 0.00 4.35
669 670 2.105128 GACACCATCCTCGGCGAG 59.895 66.667 29.16 29.16 0.00 5.03
702 703 4.974721 CCCACCAACCAAGGCGCT 62.975 66.667 7.64 0.00 0.00 5.92
722 723 4.899239 CACCCAGATCCTCGCGCC 62.899 72.222 0.00 0.00 0.00 6.53
758 759 2.278923 GAGCTCCGCGCCTCTTAC 60.279 66.667 0.87 0.00 40.39 2.34
891 892 3.507009 GGCGACCGAGCGTCTACT 61.507 66.667 0.00 0.00 39.56 2.57
913 914 0.322546 GGACAAATGGCTCCGAACCT 60.323 55.000 0.00 0.00 0.00 3.50
954 955 2.421619 GAGCTGGAGTTCTGGTTCAAG 58.578 52.381 0.00 0.00 0.00 3.02
957 958 0.843309 TGGAGTTCTGGTTCAAGCCA 59.157 50.000 0.00 0.00 36.97 4.75
1113 1114 0.037790 AGCAGCTCGGACTTGAACTC 60.038 55.000 0.00 0.00 0.00 3.01
1165 1166 2.221906 GATTGCCAGTTGCCCTGCTG 62.222 60.000 0.00 0.00 40.06 4.41
1180 1181 1.598962 GCTGTGGAGTGCTTGCTGA 60.599 57.895 0.00 0.00 0.00 4.26
1299 1300 2.599082 GGAACTAGTTGTCGAGAATGCG 59.401 50.000 14.14 0.00 0.00 4.73
1314 1315 2.431430 GCGCCTTGCCTTCAAAGC 60.431 61.111 0.00 0.00 36.53 3.51
1320 1321 1.336609 CCTTGCCTTCAAAGCTTGCTC 60.337 52.381 0.00 0.00 0.00 4.26
1342 1343 6.096001 GCTCCATCTTGATTTTGACTATGGTT 59.904 38.462 0.00 0.00 35.12 3.67
1356 1357 7.967890 TGACTATGGTTTGCATATATCAGTG 57.032 36.000 0.00 0.00 0.00 3.66
1359 1360 6.936900 ACTATGGTTTGCATATATCAGTGGTC 59.063 38.462 0.00 0.00 0.00 4.02
1379 1380 1.810030 CCGCGCCTAAACTGGAGAC 60.810 63.158 0.00 0.00 0.00 3.36
1381 1382 1.449778 GCGCCTAAACTGGAGACCC 60.450 63.158 0.00 0.00 0.00 4.46
1410 1411 4.462483 TGCCTTTCTGATGGGTTTTACATC 59.538 41.667 0.00 0.00 43.82 3.06
1417 1418 5.710099 TCTGATGGGTTTTACATCTCCAAAC 59.290 40.000 6.92 0.00 43.88 2.93
1418 1419 4.770010 TGATGGGTTTTACATCTCCAAACC 59.230 41.667 4.72 4.72 46.03 3.27
1431 1432 4.618635 TCTCCAAACCAGATGATCTCTCT 58.381 43.478 0.00 0.00 29.16 3.10
1435 1436 6.380414 TCCAAACCAGATGATCTCTCTAGAT 58.620 40.000 0.00 0.00 45.46 1.98
1452 1453 1.202758 AGATTCGTGTTTGGCTCCACA 60.203 47.619 0.00 0.00 0.00 4.17
1466 1467 3.532542 GCTCCACAGTTATTCAGGTACC 58.467 50.000 2.73 2.73 0.00 3.34
1486 1491 3.332485 ACCTTTGGCCATCCTACTTGTTA 59.668 43.478 6.09 0.00 0.00 2.41
1493 1498 3.939592 GCCATCCTACTTGTTACCTTCAC 59.060 47.826 0.00 0.00 0.00 3.18
1495 1500 3.308438 TCCTACTTGTTACCTTCACGC 57.692 47.619 0.00 0.00 0.00 5.34
1509 1514 0.944311 TCACGCGGCTTCTCAGTTTC 60.944 55.000 12.47 0.00 0.00 2.78
1518 1523 4.380973 CGGCTTCTCAGTTTCATCTCTGTA 60.381 45.833 0.00 0.00 33.89 2.74
1533 1538 8.806429 TCATCTCTGTATGCAGGAAAAATAAA 57.194 30.769 11.15 0.00 42.78 1.40
1620 1625 2.881266 CTGACAACGGTGGTGCACG 61.881 63.158 11.45 1.16 34.83 5.34
1650 1655 9.671279 TGAAGAATTTAGCTGTCAATATGAAGA 57.329 29.630 0.00 0.00 0.00 2.87
1694 1699 1.739466 GAGTTGATGCGATGCTTTCCA 59.261 47.619 0.00 0.00 0.00 3.53
1780 1785 7.615403 TGCTCATTTGATCTACTTACTGAACT 58.385 34.615 0.00 0.00 0.00 3.01
1827 1832 5.528690 CCATGTTCTTTTTCAGTCAGAGTCA 59.471 40.000 0.00 0.00 0.00 3.41
1938 1943 8.421784 TGTTATGAGGGTATTAAGTCTGACATC 58.578 37.037 10.88 0.00 0.00 3.06
1977 1982 1.986378 GTACTGAACGCTACAGTGCTG 59.014 52.381 16.26 0.00 46.15 4.41
1988 1993 4.253685 GCTACAGTGCTGGAGTTAATGAA 58.746 43.478 12.51 0.00 43.47 2.57
2001 2006 7.679783 TGGAGTTAATGAAACTTCAGATCAGA 58.320 34.615 0.00 0.00 46.83 3.27
2013 2018 3.866816 TCAGATCAGAGCCAGGGATTAT 58.133 45.455 0.00 0.00 0.00 1.28
2020 2025 5.869579 TCAGAGCCAGGGATTATAATGAAC 58.130 41.667 1.78 0.00 0.00 3.18
2071 2076 4.315803 TCAGCTAGTAAACAAGGCTTCAC 58.684 43.478 0.00 0.00 0.00 3.18
2102 2107 7.041030 TGCTCGGTTTCATTTTACAACTGATAA 60.041 33.333 0.00 0.00 35.69 1.75
2169 2174 8.821686 TGGATTTAACTGATCCATTTGTATGT 57.178 30.769 3.63 0.00 46.11 2.29
2170 2175 9.253832 TGGATTTAACTGATCCATTTGTATGTT 57.746 29.630 3.63 0.00 46.11 2.71
2171 2176 9.520204 GGATTTAACTGATCCATTTGTATGTTG 57.480 33.333 0.54 0.00 42.17 3.33
2175 2180 9.906660 TTAACTGATCCATTTGTATGTTGAAAC 57.093 29.630 0.00 0.00 0.00 2.78
2177 2182 8.862325 ACTGATCCATTTGTATGTTGAAACTA 57.138 30.769 0.00 0.00 0.00 2.24
2180 2185 7.392953 TGATCCATTTGTATGTTGAAACTAGCA 59.607 33.333 0.00 0.00 0.00 3.49
2193 2198 7.067615 TGTTGAAACTAGCACTTGTCCATTTTA 59.932 33.333 0.00 0.00 0.00 1.52
2199 2204 9.515226 AACTAGCACTTGTCCATTTTAGAATTA 57.485 29.630 0.00 0.00 0.00 1.40
2222 2227 8.818141 TTATTCTTCAATGTTAGCCTATCTCG 57.182 34.615 0.00 0.00 0.00 4.04
2226 2231 4.693283 TCAATGTTAGCCTATCTCGGTTG 58.307 43.478 0.00 0.00 0.00 3.77
2231 2236 5.839621 TGTTAGCCTATCTCGGTTGTTATC 58.160 41.667 0.00 0.00 0.00 1.75
2235 2240 3.069729 GCCTATCTCGGTTGTTATCCTGT 59.930 47.826 0.00 0.00 0.00 4.00
2267 2272 1.338200 TGCTTTTGGTGTTTGCCGTTT 60.338 42.857 0.00 0.00 0.00 3.60
2273 2278 3.587797 TGGTGTTTGCCGTTTTTGTAA 57.412 38.095 0.00 0.00 0.00 2.41
2303 2326 2.074547 TACGCTAGCTGTTTGTGTCC 57.925 50.000 13.93 0.00 0.00 4.02
2306 2329 2.036733 ACGCTAGCTGTTTGTGTCCTAA 59.963 45.455 13.93 0.00 0.00 2.69
2307 2330 2.412089 CGCTAGCTGTTTGTGTCCTAAC 59.588 50.000 13.93 0.00 0.00 2.34
2310 2333 4.142816 GCTAGCTGTTTGTGTCCTAACATG 60.143 45.833 7.70 0.00 37.81 3.21
2336 2366 4.081309 ACAGCCTTGCAATTTATGAAGCAT 60.081 37.500 0.00 0.00 36.80 3.79
2353 2383 6.291377 TGAAGCATAGGGTAATCTGATTGTC 58.709 40.000 13.01 6.10 0.00 3.18
2364 2394 8.105829 GGGTAATCTGATTGTCATATTGAGGAT 58.894 37.037 13.01 0.00 28.23 3.24
2443 3292 0.321653 GAAATCTGCCCGACCAGTGT 60.322 55.000 2.89 0.00 34.47 3.55
2470 3319 9.919416 TCATAATCTGGAGTAAATGGATTTGAA 57.081 29.630 0.00 0.00 0.00 2.69
2473 3322 8.599624 AATCTGGAGTAAATGGATTTGAATGT 57.400 30.769 0.00 0.00 0.00 2.71
2474 3323 7.395190 TCTGGAGTAAATGGATTTGAATGTG 57.605 36.000 0.00 0.00 0.00 3.21
2485 3334 6.054295 TGGATTTGAATGTGGTTCCTTTTTG 58.946 36.000 0.00 0.00 35.91 2.44
2492 3341 7.662897 TGAATGTGGTTCCTTTTTGTATAACC 58.337 34.615 0.00 0.00 40.03 2.85
2504 3353 8.137437 CCTTTTTGTATAACCTATGGCTGAATG 58.863 37.037 0.00 0.00 0.00 2.67
2540 3389 7.607250 TCAAGTTTTGTGTGGTCATTTAAGTT 58.393 30.769 0.00 0.00 0.00 2.66
2541 3390 7.543868 TCAAGTTTTGTGTGGTCATTTAAGTTG 59.456 33.333 0.00 0.00 0.00 3.16
2550 3399 6.151985 TGTGGTCATTTAAGTTGAAGTTGTGT 59.848 34.615 0.00 0.00 0.00 3.72
2565 3414 7.406553 TGAAGTTGTGTTTCGAGTCTAATTTG 58.593 34.615 0.00 0.00 0.00 2.32
2570 3419 8.492748 GTTGTGTTTCGAGTCTAATTTGTCATA 58.507 33.333 0.00 0.00 0.00 2.15
2640 3489 3.999663 CTGTGTTGTTTTGGCAAGGAAAA 59.000 39.130 0.00 0.00 0.00 2.29
2641 3490 4.583871 TGTGTTGTTTTGGCAAGGAAAAT 58.416 34.783 0.00 0.00 0.00 1.82
2643 3492 5.582665 TGTGTTGTTTTGGCAAGGAAAATAC 59.417 36.000 0.00 4.57 0.00 1.89
2665 3514 2.718563 TGTCCATCAGTACTAGCGTGA 58.281 47.619 0.00 0.00 0.00 4.35
2685 3534 7.928706 AGCGTGATATACTTTTGCTTCTAAGAT 59.071 33.333 0.00 0.00 0.00 2.40
2686 3535 8.552034 GCGTGATATACTTTTGCTTCTAAGATT 58.448 33.333 0.00 0.00 0.00 2.40
2729 3578 2.489938 TCTTAGCATTGACCGCCTTT 57.510 45.000 0.00 0.00 0.00 3.11
2790 3639 5.460646 CGACCAGCATAGTGTTTTCATTTT 58.539 37.500 0.00 0.00 0.00 1.82
2792 3641 6.160576 ACCAGCATAGTGTTTTCATTTTGT 57.839 33.333 0.00 0.00 0.00 2.83
2823 3672 8.833231 TTCAAGACTTGACTAAATTTCGATCT 57.167 30.769 17.52 0.00 39.87 2.75
2824 3673 8.833231 TCAAGACTTGACTAAATTTCGATCTT 57.167 30.769 13.99 0.00 34.08 2.40
2825 3674 8.712363 TCAAGACTTGACTAAATTTCGATCTTG 58.288 33.333 13.99 9.26 40.28 3.02
2826 3675 8.499162 CAAGACTTGACTAAATTTCGATCTTGT 58.501 33.333 9.76 0.00 36.29 3.16
2827 3676 8.608844 AGACTTGACTAAATTTCGATCTTGTT 57.391 30.769 0.00 0.00 0.00 2.83
2828 3677 9.057089 AGACTTGACTAAATTTCGATCTTGTTT 57.943 29.630 0.00 0.00 0.00 2.83
2829 3678 9.107367 GACTTGACTAAATTTCGATCTTGTTTG 57.893 33.333 0.00 0.00 0.00 2.93
2830 3679 7.591426 ACTTGACTAAATTTCGATCTTGTTTGC 59.409 33.333 0.00 0.00 0.00 3.68
2831 3680 6.378582 TGACTAAATTTCGATCTTGTTTGCC 58.621 36.000 0.00 0.00 0.00 4.52
2832 3681 6.016693 TGACTAAATTTCGATCTTGTTTGCCA 60.017 34.615 0.00 0.00 0.00 4.92
2833 3682 6.744112 ACTAAATTTCGATCTTGTTTGCCAA 58.256 32.000 0.00 0.00 0.00 4.52
2834 3683 7.206687 ACTAAATTTCGATCTTGTTTGCCAAA 58.793 30.769 0.00 0.00 31.20 3.28
2835 3684 6.917217 AAATTTCGATCTTGTTTGCCAAAA 57.083 29.167 0.00 0.00 31.20 2.44
2836 3685 7.495135 AAATTTCGATCTTGTTTGCCAAAAT 57.505 28.000 0.00 0.00 31.20 1.82
2837 3686 7.495135 AATTTCGATCTTGTTTGCCAAAATT 57.505 28.000 0.00 0.00 31.20 1.82
2838 3687 6.917217 TTTCGATCTTGTTTGCCAAAATTT 57.083 29.167 0.00 0.00 31.20 1.82
2839 3688 5.903764 TCGATCTTGTTTGCCAAAATTTG 57.096 34.783 0.00 0.00 31.20 2.32
2852 3701 5.059404 CCAAAATTTGGCGTACATCTTCT 57.941 39.130 12.23 0.00 45.17 2.85
2853 3702 5.469479 CCAAAATTTGGCGTACATCTTCTT 58.531 37.500 12.23 0.00 45.17 2.52
2854 3703 5.572896 CCAAAATTTGGCGTACATCTTCTTC 59.427 40.000 12.23 0.00 45.17 2.87
2855 3704 4.600012 AATTTGGCGTACATCTTCTTCG 57.400 40.909 0.00 0.00 0.00 3.79
2856 3705 2.736144 TTGGCGTACATCTTCTTCGT 57.264 45.000 0.00 0.00 0.00 3.85
2857 3706 1.990799 TGGCGTACATCTTCTTCGTG 58.009 50.000 0.00 0.00 0.00 4.35
2858 3707 1.278238 GGCGTACATCTTCTTCGTGG 58.722 55.000 0.00 0.00 0.00 4.94
2859 3708 1.135199 GGCGTACATCTTCTTCGTGGA 60.135 52.381 0.00 0.00 0.00 4.02
2860 3709 2.186076 GCGTACATCTTCTTCGTGGAG 58.814 52.381 0.00 0.00 0.00 3.86
2861 3710 2.415625 GCGTACATCTTCTTCGTGGAGT 60.416 50.000 0.00 0.00 0.00 3.85
2862 3711 3.181503 GCGTACATCTTCTTCGTGGAGTA 60.182 47.826 0.00 0.00 0.00 2.59
2863 3712 4.497674 GCGTACATCTTCTTCGTGGAGTAT 60.498 45.833 0.00 0.00 0.00 2.12
2864 3713 5.277683 GCGTACATCTTCTTCGTGGAGTATA 60.278 44.000 0.00 0.00 0.00 1.47
2865 3714 6.568081 GCGTACATCTTCTTCGTGGAGTATAT 60.568 42.308 0.00 0.00 0.00 0.86
2866 3715 7.361127 CGTACATCTTCTTCGTGGAGTATATT 58.639 38.462 0.00 0.00 0.00 1.28
2867 3716 7.861372 CGTACATCTTCTTCGTGGAGTATATTT 59.139 37.037 0.00 0.00 0.00 1.40
2882 3731 8.995220 TGGAGTATATTTAATTATGGACAACGC 58.005 33.333 1.02 0.00 0.00 4.84
2883 3732 9.216117 GGAGTATATTTAATTATGGACAACGCT 57.784 33.333 1.02 0.00 0.00 5.07
2888 3737 3.668596 AATTATGGACAACGCTAACGC 57.331 42.857 0.00 0.00 45.53 4.84
2889 3738 1.361793 TTATGGACAACGCTAACGCC 58.638 50.000 0.00 0.00 45.53 5.68
2890 3739 0.460635 TATGGACAACGCTAACGCCC 60.461 55.000 0.00 0.00 45.53 6.13
2891 3740 2.357760 GGACAACGCTAACGCCCA 60.358 61.111 0.00 0.00 45.53 5.36
2892 3741 1.743995 GGACAACGCTAACGCCCAT 60.744 57.895 0.00 0.00 45.53 4.00
2893 3742 0.460635 GGACAACGCTAACGCCCATA 60.461 55.000 0.00 0.00 45.53 2.74
2894 3743 0.648958 GACAACGCTAACGCCCATAC 59.351 55.000 0.00 0.00 45.53 2.39
2895 3744 1.079875 ACAACGCTAACGCCCATACG 61.080 55.000 0.00 0.00 45.53 3.06
2902 3751 2.047655 ACGCCCATACGTGTGGTG 60.048 61.111 27.08 21.19 46.28 4.17
2903 3752 2.263227 CGCCCATACGTGTGGTGA 59.737 61.111 27.08 0.00 37.57 4.02
2904 3753 1.809619 CGCCCATACGTGTGGTGAG 60.810 63.158 27.08 17.08 37.57 3.51
2905 3754 1.594833 GCCCATACGTGTGGTGAGA 59.405 57.895 27.08 0.00 37.57 3.27
2906 3755 0.460284 GCCCATACGTGTGGTGAGAG 60.460 60.000 27.08 14.11 37.57 3.20
2907 3756 0.895530 CCCATACGTGTGGTGAGAGT 59.104 55.000 27.08 0.00 37.57 3.24
2908 3757 1.275291 CCCATACGTGTGGTGAGAGTT 59.725 52.381 27.08 0.00 37.57 3.01
2909 3758 2.494471 CCCATACGTGTGGTGAGAGTTA 59.506 50.000 27.08 0.00 37.57 2.24
2910 3759 3.056393 CCCATACGTGTGGTGAGAGTTAA 60.056 47.826 27.08 0.00 37.57 2.01
2911 3760 3.924686 CCATACGTGTGGTGAGAGTTAAC 59.075 47.826 22.17 0.00 34.46 2.01
2912 3761 2.521105 ACGTGTGGTGAGAGTTAACC 57.479 50.000 0.88 0.00 36.96 2.85
2913 3762 1.069668 ACGTGTGGTGAGAGTTAACCC 59.930 52.381 0.88 0.00 35.44 4.11
2914 3763 1.792006 GTGTGGTGAGAGTTAACCCG 58.208 55.000 0.88 0.00 35.44 5.28
2915 3764 0.034337 TGTGGTGAGAGTTAACCCGC 59.966 55.000 0.88 3.32 35.44 6.13
2916 3765 0.672711 GTGGTGAGAGTTAACCCGCC 60.673 60.000 0.88 8.68 35.44 6.13
2917 3766 1.078637 GGTGAGAGTTAACCCGCCC 60.079 63.158 0.88 0.00 0.00 6.13
2918 3767 1.675219 GTGAGAGTTAACCCGCCCA 59.325 57.895 0.88 0.00 0.00 5.36
2919 3768 0.672711 GTGAGAGTTAACCCGCCCAC 60.673 60.000 0.88 0.75 0.00 4.61
2920 3769 1.122632 TGAGAGTTAACCCGCCCACA 61.123 55.000 0.88 0.00 0.00 4.17
2921 3770 0.672711 GAGAGTTAACCCGCCCACAC 60.673 60.000 0.88 0.00 0.00 3.82
2922 3771 2.030958 GAGTTAACCCGCCCACACG 61.031 63.158 0.88 0.00 0.00 4.49
2923 3772 3.729698 GTTAACCCGCCCACACGC 61.730 66.667 0.00 0.00 0.00 5.34
2929 3778 3.542676 CCGCCCACACGCCCTATA 61.543 66.667 0.00 0.00 0.00 1.31
2930 3779 2.502093 CGCCCACACGCCCTATAA 59.498 61.111 0.00 0.00 0.00 0.98
2931 3780 1.885850 CGCCCACACGCCCTATAAC 60.886 63.158 0.00 0.00 0.00 1.89
2932 3781 1.222387 GCCCACACGCCCTATAACA 59.778 57.895 0.00 0.00 0.00 2.41
2933 3782 1.093496 GCCCACACGCCCTATAACAC 61.093 60.000 0.00 0.00 0.00 3.32
2934 3783 0.250793 CCCACACGCCCTATAACACA 59.749 55.000 0.00 0.00 0.00 3.72
2935 3784 1.365699 CCACACGCCCTATAACACAC 58.634 55.000 0.00 0.00 0.00 3.82
2936 3785 0.996462 CACACGCCCTATAACACACG 59.004 55.000 0.00 0.00 0.00 4.49
2937 3786 0.108520 ACACGCCCTATAACACACGG 60.109 55.000 0.00 0.00 0.00 4.94
2938 3787 0.173935 CACGCCCTATAACACACGGA 59.826 55.000 0.00 0.00 0.00 4.69
2939 3788 0.174162 ACGCCCTATAACACACGGAC 59.826 55.000 0.00 0.00 0.00 4.79
2940 3789 0.458669 CGCCCTATAACACACGGACT 59.541 55.000 0.00 0.00 0.00 3.85
2941 3790 1.677576 CGCCCTATAACACACGGACTA 59.322 52.381 0.00 0.00 0.00 2.59
2942 3791 2.542411 CGCCCTATAACACACGGACTAC 60.542 54.545 0.00 0.00 0.00 2.73
2952 3801 4.088421 CGGACTACGCCATGTCAC 57.912 61.111 0.00 0.00 35.11 3.67
2953 3802 1.518572 CGGACTACGCCATGTCACC 60.519 63.158 0.00 0.00 35.11 4.02
2954 3803 1.518572 GGACTACGCCATGTCACCG 60.519 63.158 0.00 0.00 35.11 4.94
2955 3804 2.125673 ACTACGCCATGTCACCGC 60.126 61.111 0.00 0.00 0.00 5.68
2956 3805 2.125713 CTACGCCATGTCACCGCA 60.126 61.111 0.00 0.00 0.00 5.69
2957 3806 1.521457 CTACGCCATGTCACCGCAT 60.521 57.895 0.00 0.00 0.00 4.73
2958 3807 1.765161 CTACGCCATGTCACCGCATG 61.765 60.000 0.00 0.00 44.18 4.06
2959 3808 4.541482 CGCCATGTCACCGCATGC 62.541 66.667 7.91 7.91 43.46 4.06
2960 3809 3.442167 GCCATGTCACCGCATGCA 61.442 61.111 19.57 0.00 43.46 3.96
2961 3810 2.777972 GCCATGTCACCGCATGCAT 61.778 57.895 19.57 1.32 43.46 3.96
2962 3811 1.811195 CCATGTCACCGCATGCATT 59.189 52.632 19.57 0.00 43.46 3.56
2963 3812 0.173935 CCATGTCACCGCATGCATTT 59.826 50.000 19.57 0.00 43.46 2.32
2964 3813 1.273688 CATGTCACCGCATGCATTTG 58.726 50.000 19.57 11.01 39.59 2.32
2965 3814 0.173935 ATGTCACCGCATGCATTTGG 59.826 50.000 19.57 13.13 0.00 3.28
2966 3815 0.892814 TGTCACCGCATGCATTTGGA 60.893 50.000 19.57 4.48 0.00 3.53
2967 3816 0.243365 GTCACCGCATGCATTTGGAA 59.757 50.000 19.57 2.14 0.00 3.53
2968 3817 0.964700 TCACCGCATGCATTTGGAAA 59.035 45.000 19.57 1.79 0.00 3.13
2969 3818 1.549620 TCACCGCATGCATTTGGAAAT 59.450 42.857 19.57 0.00 0.00 2.17
2970 3819 1.928503 CACCGCATGCATTTGGAAATC 59.071 47.619 19.57 0.00 0.00 2.17
2971 3820 1.826720 ACCGCATGCATTTGGAAATCT 59.173 42.857 19.57 0.00 0.00 2.40
2972 3821 2.234414 ACCGCATGCATTTGGAAATCTT 59.766 40.909 19.57 0.00 0.00 2.40
2973 3822 3.264104 CCGCATGCATTTGGAAATCTTT 58.736 40.909 19.57 0.00 0.00 2.52
2974 3823 3.685756 CCGCATGCATTTGGAAATCTTTT 59.314 39.130 19.57 0.00 0.00 2.27
2975 3824 4.154556 CCGCATGCATTTGGAAATCTTTTT 59.845 37.500 19.57 0.00 0.00 1.94
2976 3825 5.083389 CGCATGCATTTGGAAATCTTTTTG 58.917 37.500 19.57 0.00 0.00 2.44
2977 3826 5.395642 GCATGCATTTGGAAATCTTTTTGG 58.604 37.500 14.21 0.00 0.00 3.28
2978 3827 5.181622 GCATGCATTTGGAAATCTTTTTGGA 59.818 36.000 14.21 0.00 0.00 3.53
2979 3828 6.127842 GCATGCATTTGGAAATCTTTTTGGAT 60.128 34.615 14.21 0.00 0.00 3.41
2980 3829 7.576098 GCATGCATTTGGAAATCTTTTTGGATT 60.576 33.333 14.21 0.00 37.51 3.01
2981 3830 7.820578 TGCATTTGGAAATCTTTTTGGATTT 57.179 28.000 2.65 2.65 45.19 2.17
2982 3831 8.235359 TGCATTTGGAAATCTTTTTGGATTTT 57.765 26.923 4.34 0.00 43.36 1.82
2983 3832 8.351461 TGCATTTGGAAATCTTTTTGGATTTTC 58.649 29.630 4.34 3.32 43.36 2.29
2984 3833 8.351461 GCATTTGGAAATCTTTTTGGATTTTCA 58.649 29.630 6.78 6.78 44.61 2.69
2985 3834 9.887406 CATTTGGAAATCTTTTTGGATTTTCAG 57.113 29.630 9.79 0.00 45.90 3.02
2986 3835 9.631257 ATTTGGAAATCTTTTTGGATTTTCAGT 57.369 25.926 9.79 3.24 45.90 3.41
2987 3836 9.460019 TTTGGAAATCTTTTTGGATTTTCAGTT 57.540 25.926 9.79 0.00 45.90 3.16
2988 3837 9.460019 TTGGAAATCTTTTTGGATTTTCAGTTT 57.540 25.926 9.79 0.00 45.90 2.66
2989 3838 9.460019 TGGAAATCTTTTTGGATTTTCAGTTTT 57.540 25.926 6.78 0.00 42.72 2.43
3032 3881 9.801873 TTAAATGAAAAATCCGATTGAAGATCC 57.198 29.630 0.00 0.00 0.00 3.36
3033 3882 7.408756 AATGAAAAATCCGATTGAAGATCCA 57.591 32.000 0.00 0.00 0.00 3.41
3034 3883 7.592885 ATGAAAAATCCGATTGAAGATCCAT 57.407 32.000 0.00 0.00 0.00 3.41
3035 3884 7.408756 TGAAAAATCCGATTGAAGATCCATT 57.591 32.000 0.00 0.00 0.00 3.16
3036 3885 7.839907 TGAAAAATCCGATTGAAGATCCATTT 58.160 30.769 0.00 0.00 0.00 2.32
3037 3886 8.313292 TGAAAAATCCGATTGAAGATCCATTTT 58.687 29.630 0.00 0.00 0.00 1.82
3038 3887 8.707938 AAAAATCCGATTGAAGATCCATTTTC 57.292 30.769 0.00 0.00 0.00 2.29
3039 3888 7.408756 AAATCCGATTGAAGATCCATTTTCA 57.591 32.000 0.00 0.00 0.00 2.69
3040 3889 5.818136 TCCGATTGAAGATCCATTTTCAC 57.182 39.130 0.00 0.00 33.36 3.18
3041 3890 4.640201 TCCGATTGAAGATCCATTTTCACC 59.360 41.667 0.00 0.00 33.36 4.02
3042 3891 4.398988 CCGATTGAAGATCCATTTTCACCA 59.601 41.667 0.00 0.00 33.36 4.17
3043 3892 5.068198 CCGATTGAAGATCCATTTTCACCAT 59.932 40.000 0.00 0.00 33.36 3.55
3044 3893 6.406177 CCGATTGAAGATCCATTTTCACCATT 60.406 38.462 0.00 0.00 33.36 3.16
3045 3894 7.201812 CCGATTGAAGATCCATTTTCACCATTA 60.202 37.037 0.00 0.00 33.36 1.90
3046 3895 8.190122 CGATTGAAGATCCATTTTCACCATTAA 58.810 33.333 0.00 0.00 33.36 1.40
3047 3896 9.874205 GATTGAAGATCCATTTTCACCATTAAA 57.126 29.630 0.00 0.00 33.36 1.52
3050 3899 9.874205 TGAAGATCCATTTTCACCATTAAATTC 57.126 29.630 0.00 0.00 0.00 2.17
3051 3900 9.317936 GAAGATCCATTTTCACCATTAAATTCC 57.682 33.333 0.00 0.00 0.00 3.01
3052 3901 8.613922 AGATCCATTTTCACCATTAAATTCCT 57.386 30.769 0.00 0.00 0.00 3.36
3053 3902 8.699130 AGATCCATTTTCACCATTAAATTCCTC 58.301 33.333 0.00 0.00 0.00 3.71
3054 3903 7.789202 TCCATTTTCACCATTAAATTCCTCA 57.211 32.000 0.00 0.00 0.00 3.86
3055 3904 8.378115 TCCATTTTCACCATTAAATTCCTCAT 57.622 30.769 0.00 0.00 0.00 2.90
3056 3905 8.259411 TCCATTTTCACCATTAAATTCCTCATG 58.741 33.333 0.00 0.00 0.00 3.07
3057 3906 8.259411 CCATTTTCACCATTAAATTCCTCATGA 58.741 33.333 0.00 0.00 0.00 3.07
3058 3907 9.090692 CATTTTCACCATTAAATTCCTCATGAC 57.909 33.333 0.00 0.00 0.00 3.06
3059 3908 6.435430 TTCACCATTAAATTCCTCATGACG 57.565 37.500 0.00 0.00 0.00 4.35
3060 3909 5.739959 TCACCATTAAATTCCTCATGACGA 58.260 37.500 0.00 0.00 0.00 4.20
3061 3910 5.817296 TCACCATTAAATTCCTCATGACGAG 59.183 40.000 0.00 0.00 41.89 4.18
3062 3911 5.817296 CACCATTAAATTCCTCATGACGAGA 59.183 40.000 0.00 0.00 45.45 4.04
3063 3912 6.484643 CACCATTAAATTCCTCATGACGAGAT 59.515 38.462 0.00 0.00 45.45 2.75
3064 3913 6.708054 ACCATTAAATTCCTCATGACGAGATC 59.292 38.462 0.00 0.00 45.45 2.75
3065 3914 6.933521 CCATTAAATTCCTCATGACGAGATCT 59.066 38.462 0.00 0.00 45.45 2.75
3066 3915 7.443575 CCATTAAATTCCTCATGACGAGATCTT 59.556 37.037 0.00 0.00 45.45 2.40
3067 3916 8.494347 CATTAAATTCCTCATGACGAGATCTTC 58.506 37.037 0.00 0.00 45.45 2.87
3112 3961 9.730420 AATATATTTCGACGATTTTCTTTTGGG 57.270 29.630 0.00 0.00 0.00 4.12
3113 3962 4.904253 TTTCGACGATTTTCTTTTGGGT 57.096 36.364 0.00 0.00 0.00 4.51
3114 3963 4.904253 TTCGACGATTTTCTTTTGGGTT 57.096 36.364 0.00 0.00 0.00 4.11
3115 3964 6.374565 TTTCGACGATTTTCTTTTGGGTTA 57.625 33.333 0.00 0.00 0.00 2.85
3116 3965 6.374565 TTCGACGATTTTCTTTTGGGTTAA 57.625 33.333 0.00 0.00 0.00 2.01
3117 3966 6.374565 TCGACGATTTTCTTTTGGGTTAAA 57.625 33.333 0.00 0.00 0.00 1.52
3118 3967 6.793349 TCGACGATTTTCTTTTGGGTTAAAA 58.207 32.000 0.00 0.00 36.82 1.52
3126 3975 3.787785 CTTTTGGGTTAAAAGTTGCCGT 58.212 40.909 0.00 0.00 46.52 5.68
3127 3976 2.873133 TTGGGTTAAAAGTTGCCGTG 57.127 45.000 0.00 0.00 0.00 4.94
3128 3977 1.765230 TGGGTTAAAAGTTGCCGTGT 58.235 45.000 0.00 0.00 0.00 4.49
3129 3978 1.677052 TGGGTTAAAAGTTGCCGTGTC 59.323 47.619 0.00 0.00 0.00 3.67
3130 3979 1.951602 GGGTTAAAAGTTGCCGTGTCT 59.048 47.619 0.00 0.00 0.00 3.41
3131 3980 3.140623 GGGTTAAAAGTTGCCGTGTCTA 58.859 45.455 0.00 0.00 0.00 2.59
3132 3981 3.754850 GGGTTAAAAGTTGCCGTGTCTAT 59.245 43.478 0.00 0.00 0.00 1.98
3133 3982 4.216902 GGGTTAAAAGTTGCCGTGTCTATT 59.783 41.667 0.00 0.00 0.00 1.73
3134 3983 5.412286 GGGTTAAAAGTTGCCGTGTCTATTA 59.588 40.000 0.00 0.00 0.00 0.98
3135 3984 6.309436 GGTTAAAAGTTGCCGTGTCTATTAC 58.691 40.000 0.00 0.00 0.00 1.89
3136 3985 6.073112 GGTTAAAAGTTGCCGTGTCTATTACA 60.073 38.462 0.00 0.00 35.06 2.41
3163 4012 7.742556 TGAATTGTCATGATGTTTACACTGA 57.257 32.000 0.00 0.00 0.00 3.41
3164 4013 8.164058 TGAATTGTCATGATGTTTACACTGAA 57.836 30.769 0.00 0.00 0.00 3.02
3165 4014 8.291740 TGAATTGTCATGATGTTTACACTGAAG 58.708 33.333 0.00 0.00 0.00 3.02
3166 4015 7.750229 ATTGTCATGATGTTTACACTGAAGT 57.250 32.000 0.00 0.00 0.00 3.01
3167 4016 7.566760 TTGTCATGATGTTTACACTGAAGTT 57.433 32.000 0.00 0.00 0.00 2.66
3168 4017 6.958255 TGTCATGATGTTTACACTGAAGTTG 58.042 36.000 0.00 0.00 0.00 3.16
3169 4018 5.853282 GTCATGATGTTTACACTGAAGTTGC 59.147 40.000 0.00 0.00 0.00 4.17
3170 4019 4.829064 TGATGTTTACACTGAAGTTGCC 57.171 40.909 0.00 0.00 0.00 4.52
3171 4020 4.203226 TGATGTTTACACTGAAGTTGCCA 58.797 39.130 0.00 0.00 0.00 4.92
3172 4021 4.826733 TGATGTTTACACTGAAGTTGCCAT 59.173 37.500 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.287373 TGACCGTATAATTTACAGAAAGGTTTT 57.713 29.630 0.00 0.00 0.00 2.43
18 19 8.851541 TGACCGTATAATTTACAGAAAGGTTT 57.148 30.769 0.00 0.00 0.00 3.27
19 20 9.106070 GATGACCGTATAATTTACAGAAAGGTT 57.894 33.333 0.00 0.00 0.00 3.50
20 21 8.262227 TGATGACCGTATAATTTACAGAAAGGT 58.738 33.333 0.00 0.00 0.00 3.50
21 22 8.657074 TGATGACCGTATAATTTACAGAAAGG 57.343 34.615 0.00 0.00 0.00 3.11
23 24 9.607988 ACATGATGACCGTATAATTTACAGAAA 57.392 29.630 0.00 0.00 0.00 2.52
30 31 9.100554 TCGTTTTACATGATGACCGTATAATTT 57.899 29.630 0.00 0.00 0.00 1.82
31 32 8.545420 GTCGTTTTACATGATGACCGTATAATT 58.455 33.333 0.00 0.00 0.00 1.40
32 33 7.924412 AGTCGTTTTACATGATGACCGTATAAT 59.076 33.333 0.00 0.00 33.32 1.28
33 34 7.259882 AGTCGTTTTACATGATGACCGTATAA 58.740 34.615 0.00 0.00 33.32 0.98
34 35 6.798482 AGTCGTTTTACATGATGACCGTATA 58.202 36.000 0.00 0.00 33.32 1.47
35 36 5.657474 AGTCGTTTTACATGATGACCGTAT 58.343 37.500 0.00 0.00 33.32 3.06
36 37 5.063180 AGTCGTTTTACATGATGACCGTA 57.937 39.130 0.00 0.00 33.32 4.02
37 38 3.921677 AGTCGTTTTACATGATGACCGT 58.078 40.909 0.00 0.00 33.32 4.83
38 39 4.921470 AAGTCGTTTTACATGATGACCG 57.079 40.909 0.00 0.00 33.32 4.79
53 54 5.689068 CCTCAAAACGTCTAGTAAAAGTCGT 59.311 40.000 0.00 0.00 41.78 4.34
54 55 5.118203 CCCTCAAAACGTCTAGTAAAAGTCG 59.882 44.000 0.00 0.00 34.78 4.18
55 56 5.407691 CCCCTCAAAACGTCTAGTAAAAGTC 59.592 44.000 0.00 0.00 0.00 3.01
56 57 5.070847 TCCCCTCAAAACGTCTAGTAAAAGT 59.929 40.000 0.00 0.00 0.00 2.66
57 58 5.544650 TCCCCTCAAAACGTCTAGTAAAAG 58.455 41.667 0.00 0.00 0.00 2.27
58 59 5.544650 CTCCCCTCAAAACGTCTAGTAAAA 58.455 41.667 0.00 0.00 0.00 1.52
59 60 4.562143 GCTCCCCTCAAAACGTCTAGTAAA 60.562 45.833 0.00 0.00 0.00 2.01
60 61 3.056322 GCTCCCCTCAAAACGTCTAGTAA 60.056 47.826 0.00 0.00 0.00 2.24
61 62 2.494870 GCTCCCCTCAAAACGTCTAGTA 59.505 50.000 0.00 0.00 0.00 1.82
62 63 1.275573 GCTCCCCTCAAAACGTCTAGT 59.724 52.381 0.00 0.00 0.00 2.57
63 64 1.550976 AGCTCCCCTCAAAACGTCTAG 59.449 52.381 0.00 0.00 0.00 2.43
64 65 1.640917 AGCTCCCCTCAAAACGTCTA 58.359 50.000 0.00 0.00 0.00 2.59
65 66 1.640917 TAGCTCCCCTCAAAACGTCT 58.359 50.000 0.00 0.00 0.00 4.18
66 67 2.678336 CAATAGCTCCCCTCAAAACGTC 59.322 50.000 0.00 0.00 0.00 4.34
67 68 2.618045 CCAATAGCTCCCCTCAAAACGT 60.618 50.000 0.00 0.00 0.00 3.99
68 69 2.017049 CCAATAGCTCCCCTCAAAACG 58.983 52.381 0.00 0.00 0.00 3.60
69 70 3.366052 TCCAATAGCTCCCCTCAAAAC 57.634 47.619 0.00 0.00 0.00 2.43
70 71 4.608170 AATCCAATAGCTCCCCTCAAAA 57.392 40.909 0.00 0.00 0.00 2.44
71 72 4.536765 GAAATCCAATAGCTCCCCTCAAA 58.463 43.478 0.00 0.00 0.00 2.69
72 73 3.117512 GGAAATCCAATAGCTCCCCTCAA 60.118 47.826 0.00 0.00 35.64 3.02
73 74 2.443255 GGAAATCCAATAGCTCCCCTCA 59.557 50.000 0.00 0.00 35.64 3.86
74 75 2.713708 AGGAAATCCAATAGCTCCCCTC 59.286 50.000 1.67 0.00 38.89 4.30
75 76 2.713708 GAGGAAATCCAATAGCTCCCCT 59.286 50.000 1.67 0.00 38.89 4.79
76 77 2.713708 AGAGGAAATCCAATAGCTCCCC 59.286 50.000 1.67 0.00 38.89 4.81
77 78 4.445557 AAGAGGAAATCCAATAGCTCCC 57.554 45.455 1.67 0.00 38.89 4.30
78 79 5.000591 GCTAAGAGGAAATCCAATAGCTCC 58.999 45.833 17.08 0.00 39.00 4.70
79 80 5.863965 AGCTAAGAGGAAATCCAATAGCTC 58.136 41.667 19.49 3.07 43.84 4.09
80 81 5.510520 CGAGCTAAGAGGAAATCCAATAGCT 60.511 44.000 22.70 22.70 46.75 3.32
81 82 4.688413 CGAGCTAAGAGGAAATCCAATAGC 59.312 45.833 16.83 16.83 40.69 2.97
82 83 5.848406 ACGAGCTAAGAGGAAATCCAATAG 58.152 41.667 1.67 2.65 38.89 1.73
83 84 5.362717 TGACGAGCTAAGAGGAAATCCAATA 59.637 40.000 1.67 0.00 38.89 1.90
84 85 4.162320 TGACGAGCTAAGAGGAAATCCAAT 59.838 41.667 1.67 0.00 38.89 3.16
85 86 3.513912 TGACGAGCTAAGAGGAAATCCAA 59.486 43.478 1.67 0.00 38.89 3.53
86 87 3.096852 TGACGAGCTAAGAGGAAATCCA 58.903 45.455 1.67 0.00 38.89 3.41
87 88 3.802948 TGACGAGCTAAGAGGAAATCC 57.197 47.619 0.00 0.00 0.00 3.01
88 89 4.749976 ACTTGACGAGCTAAGAGGAAATC 58.250 43.478 0.96 0.00 0.00 2.17
89 90 4.810191 ACTTGACGAGCTAAGAGGAAAT 57.190 40.909 0.96 0.00 0.00 2.17
90 91 4.602340 AACTTGACGAGCTAAGAGGAAA 57.398 40.909 0.96 0.00 0.00 3.13
91 92 4.602340 AAACTTGACGAGCTAAGAGGAA 57.398 40.909 0.96 0.00 0.00 3.36
92 93 4.602340 AAAACTTGACGAGCTAAGAGGA 57.398 40.909 0.96 0.00 0.00 3.71
115 116 7.833285 AAGAGTAAGATTGCCTAACCAAAAA 57.167 32.000 0.00 0.00 0.00 1.94
116 117 7.833285 AAAGAGTAAGATTGCCTAACCAAAA 57.167 32.000 0.00 0.00 0.00 2.44
117 118 7.833285 AAAAGAGTAAGATTGCCTAACCAAA 57.167 32.000 0.00 0.00 0.00 3.28
118 119 7.833285 AAAAAGAGTAAGATTGCCTAACCAA 57.167 32.000 0.00 0.00 0.00 3.67
655 656 2.556459 CGATCTCGCCGAGGATGGT 61.556 63.158 15.08 0.00 0.00 3.55
702 703 3.838271 GCGAGGATCTGGGTGCGA 61.838 66.667 0.00 0.00 0.00 5.10
816 817 1.628447 GCGGATGCGTTGAAACCGTA 61.628 55.000 8.84 0.00 44.48 4.02
885 886 3.003480 GAGCCATTTGTCCACAGTAGAC 58.997 50.000 0.00 0.00 34.72 2.59
888 889 1.338674 CGGAGCCATTTGTCCACAGTA 60.339 52.381 0.00 0.00 32.55 2.74
891 892 0.109532 TTCGGAGCCATTTGTCCACA 59.890 50.000 0.00 0.00 32.55 4.17
913 914 2.283529 GGAGGTTGTCCAGAGCGGA 61.284 63.158 0.00 0.00 46.10 5.54
954 955 1.009389 GCTGCGGTCGATAGTATGGC 61.009 60.000 0.00 0.00 37.40 4.40
957 958 1.579932 CGGCTGCGGTCGATAGTAT 59.420 57.895 16.09 0.00 44.06 2.12
984 985 3.080765 ATGGACGATGGTGGCGGA 61.081 61.111 0.00 0.00 0.00 5.54
1113 1114 1.875813 GCACTCCGAGATGCTGACG 60.876 63.158 1.33 0.00 38.84 4.35
1201 1202 0.251354 GAGTTGATCCTGAGGCAGCA 59.749 55.000 0.00 0.00 0.00 4.41
1284 1285 0.320771 AAGGCGCATTCTCGACAACT 60.321 50.000 10.83 0.00 40.62 3.16
1285 1286 0.179215 CAAGGCGCATTCTCGACAAC 60.179 55.000 10.83 0.00 40.62 3.32
1314 1315 5.640189 AGTCAAAATCAAGATGGAGCAAG 57.360 39.130 0.00 0.00 0.00 4.01
1320 1321 6.532657 GCAAACCATAGTCAAAATCAAGATGG 59.467 38.462 0.00 0.00 38.65 3.51
1342 1343 3.554960 GCGGAGACCACTGATATATGCAA 60.555 47.826 0.00 0.00 0.00 4.08
1353 1354 2.280552 TTTAGGCGCGGAGACCACT 61.281 57.895 8.83 0.00 0.00 4.00
1356 1357 1.810030 CAGTTTAGGCGCGGAGACC 60.810 63.158 8.83 0.00 0.00 3.85
1359 1360 1.519455 CTCCAGTTTAGGCGCGGAG 60.519 63.158 8.83 10.26 37.52 4.63
1379 1380 0.842635 ATCAGAAAGGCAGCCTAGGG 59.157 55.000 16.56 5.13 31.13 3.53
1381 1382 1.476471 CCCATCAGAAAGGCAGCCTAG 60.476 57.143 16.56 5.55 31.13 3.02
1410 1411 5.832595 TCTAGAGAGATCATCTGGTTTGGAG 59.167 44.000 9.98 0.00 38.84 3.86
1417 1418 5.473162 ACACGAATCTAGAGAGATCATCTGG 59.527 44.000 9.98 7.61 41.87 3.86
1418 1419 6.558771 ACACGAATCTAGAGAGATCATCTG 57.441 41.667 9.98 2.38 41.87 2.90
1419 1420 7.424803 CAAACACGAATCTAGAGAGATCATCT 58.575 38.462 0.00 5.85 41.87 2.90
1431 1432 2.037902 TGTGGAGCCAAACACGAATCTA 59.962 45.455 0.00 0.00 40.39 1.98
1435 1436 0.107410 ACTGTGGAGCCAAACACGAA 60.107 50.000 0.00 0.00 40.39 3.85
1452 1453 3.332485 TGGCCAAAGGTACCTGAATAACT 59.668 43.478 17.14 0.00 0.00 2.24
1466 1467 3.694566 GGTAACAAGTAGGATGGCCAAAG 59.305 47.826 10.96 0.00 36.29 2.77
1486 1491 2.048127 GAGAAGCCGCGTGAAGGT 60.048 61.111 4.92 0.00 0.00 3.50
1493 1498 0.371645 GATGAAACTGAGAAGCCGCG 59.628 55.000 0.00 0.00 0.00 6.46
1495 1500 2.928757 CAGAGATGAAACTGAGAAGCCG 59.071 50.000 0.00 0.00 36.38 5.52
1518 1523 5.412286 GCACATGGTTTTATTTTTCCTGCAT 59.588 36.000 0.00 0.00 0.00 3.96
1533 1538 1.065401 CAACGACAAGTGCACATGGTT 59.935 47.619 24.49 16.65 0.00 3.67
1620 1625 5.362556 TTGACAGCTAAATTCTTCACTGC 57.637 39.130 0.00 0.00 0.00 4.40
1694 1699 9.055689 ACCTCAATATATATCTTCTCCAAGCAT 57.944 33.333 0.00 0.00 0.00 3.79
1773 1778 3.366052 AACCAACCACTTCAGTTCAGT 57.634 42.857 0.00 0.00 0.00 3.41
1780 1785 3.772025 ACAAATGGAAACCAACCACTTCA 59.228 39.130 0.00 0.00 40.36 3.02
1856 1861 4.403734 ACATTTGGTAAGATTCCGGTGTT 58.596 39.130 0.00 0.00 0.00 3.32
1938 1943 7.077605 TCAGTACAAAGAATGAAGCAAATTCG 58.922 34.615 0.00 0.00 41.14 3.34
1977 1982 7.201600 GCTCTGATCTGAAGTTTCATTAACTCC 60.202 40.741 3.72 0.00 46.34 3.85
1988 1993 1.558756 CCCTGGCTCTGATCTGAAGTT 59.441 52.381 3.72 0.00 0.00 2.66
1999 2004 5.912149 TGTTCATTATAATCCCTGGCTCT 57.088 39.130 0.00 0.00 0.00 4.09
2001 2006 7.300658 AGAATTGTTCATTATAATCCCTGGCT 58.699 34.615 0.00 0.00 0.00 4.75
2013 2018 6.647334 TGTTCTGCCAAGAATTGTTCATTA 57.353 33.333 0.00 0.00 46.99 1.90
2057 2062 2.489971 CACCTCGTGAAGCCTTGTTTA 58.510 47.619 0.00 0.00 35.23 2.01
2102 2107 1.739049 CAAACACCACGGGCACATT 59.261 52.632 0.00 0.00 0.00 2.71
2169 2174 6.463995 AAAATGGACAAGTGCTAGTTTCAA 57.536 33.333 0.00 0.00 0.00 2.69
2170 2175 6.995686 TCTAAAATGGACAAGTGCTAGTTTCA 59.004 34.615 0.00 0.00 0.00 2.69
2171 2176 7.435068 TCTAAAATGGACAAGTGCTAGTTTC 57.565 36.000 0.00 0.00 0.00 2.78
2177 2182 9.247861 AGAATAATTCTAAAATGGACAAGTGCT 57.752 29.630 0.00 0.00 38.49 4.40
2199 2204 6.183361 ACCGAGATAGGCTAACATTGAAGAAT 60.183 38.462 0.00 0.00 33.69 2.40
2213 2218 3.069729 ACAGGATAACAACCGAGATAGGC 59.930 47.826 0.00 0.00 33.69 3.93
2222 2227 6.385649 TCAAGTTTTGACAGGATAACAACC 57.614 37.500 0.00 0.00 34.08 3.77
2226 2231 6.681777 AGCAATCAAGTTTTGACAGGATAAC 58.318 36.000 0.00 0.00 43.48 1.89
2231 2236 5.006941 CCAAAAGCAATCAAGTTTTGACAGG 59.993 40.000 8.06 0.00 43.48 4.00
2235 2240 5.486526 ACACCAAAAGCAATCAAGTTTTGA 58.513 33.333 8.06 0.00 41.62 2.69
2273 2278 8.943002 ACAAACAGCTAGCGTAAAATATAAACT 58.057 29.630 9.55 0.00 0.00 2.66
2286 2309 2.363788 TAGGACACAAACAGCTAGCG 57.636 50.000 9.55 7.05 0.00 4.26
2287 2310 3.399330 TGTTAGGACACAAACAGCTAGC 58.601 45.455 6.62 6.62 32.11 3.42
2303 2326 4.764679 TTGCAAGGCTGTTACATGTTAG 57.235 40.909 2.30 1.71 0.00 2.34
2306 2329 4.605640 AAATTGCAAGGCTGTTACATGT 57.394 36.364 4.94 2.69 0.00 3.21
2307 2330 6.331845 TCATAAATTGCAAGGCTGTTACATG 58.668 36.000 4.94 0.00 0.00 3.21
2310 2333 5.289434 GCTTCATAAATTGCAAGGCTGTTAC 59.711 40.000 4.94 0.00 0.00 2.50
2336 2366 8.597167 CCTCAATATGACAATCAGATTACCCTA 58.403 37.037 0.00 0.00 36.29 3.53
2376 2406 7.498900 CCAGAAATCAAATGTAGCTACCATACA 59.501 37.037 21.01 4.97 37.53 2.29
2380 2410 5.647658 CACCAGAAATCAAATGTAGCTACCA 59.352 40.000 21.01 9.66 0.00 3.25
2418 3267 1.073923 GGTCGGGCAGATTTCCCATAT 59.926 52.381 0.00 0.00 44.11 1.78
2443 3292 9.919416 TCAAATCCATTTACTCCAGATTATGAA 57.081 29.630 0.00 0.00 0.00 2.57
2461 3310 5.885449 AAAAGGAACCACATTCAAATCCA 57.115 34.783 0.00 0.00 39.30 3.41
2470 3319 8.966868 CATAGGTTATACAAAAAGGAACCACAT 58.033 33.333 5.01 0.00 41.71 3.21
2473 3322 6.378848 GCCATAGGTTATACAAAAAGGAACCA 59.621 38.462 5.01 0.00 41.71 3.67
2474 3323 6.605995 AGCCATAGGTTATACAAAAAGGAACC 59.394 38.462 0.00 0.00 39.93 3.62
2485 3334 7.568199 AACAACATTCAGCCATAGGTTATAC 57.432 36.000 0.00 0.00 0.00 1.47
2504 3353 9.308318 ACCACACAAAACTTGAATTATAACAAC 57.692 29.630 0.00 0.00 0.00 3.32
2540 3389 7.065324 ACAAATTAGACTCGAAACACAACTTCA 59.935 33.333 0.00 0.00 0.00 3.02
2541 3390 7.407337 ACAAATTAGACTCGAAACACAACTTC 58.593 34.615 0.00 0.00 0.00 3.01
2604 3453 6.381481 AACAACACAGGACATGCATATATG 57.619 37.500 8.45 8.45 0.00 1.78
2605 3454 7.259882 CAAAACAACACAGGACATGCATATAT 58.740 34.615 0.00 0.00 0.00 0.86
2606 3455 6.350027 CCAAAACAACACAGGACATGCATATA 60.350 38.462 0.00 0.00 0.00 0.86
2616 3465 1.480137 CCTTGCCAAAACAACACAGGA 59.520 47.619 0.00 0.00 0.00 3.86
2640 3489 4.888239 ACGCTAGTACTGATGGACAAGTAT 59.112 41.667 5.39 0.00 0.00 2.12
2641 3490 4.095932 CACGCTAGTACTGATGGACAAGTA 59.904 45.833 5.39 0.00 0.00 2.24
2643 3492 3.128764 TCACGCTAGTACTGATGGACAAG 59.871 47.826 5.39 0.00 0.00 3.16
2729 3578 7.841282 TTTCACTTATGATACCCAACCAAAA 57.159 32.000 0.00 0.00 33.85 2.44
2732 3581 7.671819 TGAATTTTCACTTATGATACCCAACCA 59.328 33.333 0.00 0.00 33.85 3.67
2759 3608 0.647410 CTATGCTGGTCGCTCAAACG 59.353 55.000 0.00 0.00 40.11 3.60
2761 3610 1.001974 ACACTATGCTGGTCGCTCAAA 59.998 47.619 0.00 0.00 40.11 2.69
2765 3614 2.076863 GAAAACACTATGCTGGTCGCT 58.923 47.619 0.00 0.00 40.11 4.93
2767 3616 4.685169 AATGAAAACACTATGCTGGTCG 57.315 40.909 0.00 0.00 0.00 4.79
2800 3649 8.499162 ACAAGATCGAAATTTAGTCAAGTCTTG 58.501 33.333 6.21 6.21 42.54 3.02
2801 3650 8.608844 ACAAGATCGAAATTTAGTCAAGTCTT 57.391 30.769 0.00 0.00 0.00 3.01
2802 3651 8.608844 AACAAGATCGAAATTTAGTCAAGTCT 57.391 30.769 0.00 0.00 0.00 3.24
2803 3652 9.107367 CAAACAAGATCGAAATTTAGTCAAGTC 57.893 33.333 0.00 0.00 0.00 3.01
2804 3653 7.591426 GCAAACAAGATCGAAATTTAGTCAAGT 59.409 33.333 0.00 0.00 0.00 3.16
2805 3654 7.061094 GGCAAACAAGATCGAAATTTAGTCAAG 59.939 37.037 0.00 0.00 0.00 3.02
2806 3655 6.861055 GGCAAACAAGATCGAAATTTAGTCAA 59.139 34.615 0.00 0.00 0.00 3.18
2807 3656 6.016693 TGGCAAACAAGATCGAAATTTAGTCA 60.017 34.615 0.00 0.00 0.00 3.41
2808 3657 6.378582 TGGCAAACAAGATCGAAATTTAGTC 58.621 36.000 0.00 0.00 0.00 2.59
2809 3658 6.325919 TGGCAAACAAGATCGAAATTTAGT 57.674 33.333 0.00 0.00 0.00 2.24
2810 3659 7.636259 TTTGGCAAACAAGATCGAAATTTAG 57.364 32.000 8.93 0.00 40.82 1.85
2811 3660 8.600449 ATTTTGGCAAACAAGATCGAAATTTA 57.400 26.923 13.10 0.00 40.82 1.40
2812 3661 6.917217 TTTTGGCAAACAAGATCGAAATTT 57.083 29.167 13.10 0.00 40.82 1.82
2813 3662 7.495135 AATTTTGGCAAACAAGATCGAAATT 57.505 28.000 13.10 2.91 40.82 1.82
2814 3663 7.354257 CAAATTTTGGCAAACAAGATCGAAAT 58.646 30.769 13.10 0.00 40.82 2.17
2815 3664 6.238320 CCAAATTTTGGCAAACAAGATCGAAA 60.238 34.615 13.10 0.00 45.17 3.46
2816 3665 5.236047 CCAAATTTTGGCAAACAAGATCGAA 59.764 36.000 13.10 0.00 45.17 3.71
2817 3666 4.749099 CCAAATTTTGGCAAACAAGATCGA 59.251 37.500 13.10 0.00 45.17 3.59
2818 3667 5.021120 CCAAATTTTGGCAAACAAGATCG 57.979 39.130 13.10 0.00 45.17 3.69
2831 3680 5.283717 CGAAGAAGATGTACGCCAAATTTTG 59.716 40.000 1.99 1.99 0.00 2.44
2832 3681 5.048991 ACGAAGAAGATGTACGCCAAATTTT 60.049 36.000 0.00 0.00 0.00 1.82
2833 3682 4.454504 ACGAAGAAGATGTACGCCAAATTT 59.545 37.500 0.00 0.00 0.00 1.82
2834 3683 4.000988 ACGAAGAAGATGTACGCCAAATT 58.999 39.130 0.00 0.00 0.00 1.82
2835 3684 3.370978 CACGAAGAAGATGTACGCCAAAT 59.629 43.478 0.00 0.00 0.00 2.32
2836 3685 2.734606 CACGAAGAAGATGTACGCCAAA 59.265 45.455 0.00 0.00 0.00 3.28
2837 3686 2.333926 CACGAAGAAGATGTACGCCAA 58.666 47.619 0.00 0.00 0.00 4.52
2838 3687 1.403647 CCACGAAGAAGATGTACGCCA 60.404 52.381 0.00 0.00 0.00 5.69
2839 3688 1.135199 TCCACGAAGAAGATGTACGCC 60.135 52.381 0.00 0.00 0.00 5.68
2840 3689 2.186076 CTCCACGAAGAAGATGTACGC 58.814 52.381 0.00 0.00 0.00 4.42
2841 3690 3.489180 ACTCCACGAAGAAGATGTACG 57.511 47.619 0.00 0.00 0.00 3.67
2856 3705 8.995220 GCGTTGTCCATAATTAAATATACTCCA 58.005 33.333 0.00 0.00 0.00 3.86
2857 3706 9.216117 AGCGTTGTCCATAATTAAATATACTCC 57.784 33.333 0.00 0.00 0.00 3.85
2862 3711 8.013378 GCGTTAGCGTTGTCCATAATTAAATAT 58.987 33.333 0.00 0.00 40.81 1.28
2863 3712 7.346695 GCGTTAGCGTTGTCCATAATTAAATA 58.653 34.615 0.00 0.00 40.81 1.40
2864 3713 6.196571 GCGTTAGCGTTGTCCATAATTAAAT 58.803 36.000 0.00 0.00 40.81 1.40
2865 3714 5.447548 GGCGTTAGCGTTGTCCATAATTAAA 60.448 40.000 0.00 0.00 46.35 1.52
2866 3715 4.034279 GGCGTTAGCGTTGTCCATAATTAA 59.966 41.667 0.00 0.00 46.35 1.40
2867 3716 3.556775 GGCGTTAGCGTTGTCCATAATTA 59.443 43.478 0.00 0.00 46.35 1.40
2868 3717 2.353579 GGCGTTAGCGTTGTCCATAATT 59.646 45.455 0.00 0.00 46.35 1.40
2869 3718 1.937899 GGCGTTAGCGTTGTCCATAAT 59.062 47.619 0.00 0.00 46.35 1.28
2870 3719 1.361793 GGCGTTAGCGTTGTCCATAA 58.638 50.000 0.00 0.00 46.35 1.90
2871 3720 0.460635 GGGCGTTAGCGTTGTCCATA 60.461 55.000 0.00 0.00 46.35 2.74
2872 3721 1.743995 GGGCGTTAGCGTTGTCCAT 60.744 57.895 0.00 0.00 46.35 3.41
2873 3722 2.357760 GGGCGTTAGCGTTGTCCA 60.358 61.111 0.00 0.00 46.35 4.02
2874 3723 0.460635 TATGGGCGTTAGCGTTGTCC 60.461 55.000 0.00 0.00 46.35 4.02
2875 3724 0.648958 GTATGGGCGTTAGCGTTGTC 59.351 55.000 0.00 0.00 46.35 3.18
2876 3725 1.079875 CGTATGGGCGTTAGCGTTGT 61.080 55.000 0.00 0.00 46.35 3.32
2877 3726 1.079875 ACGTATGGGCGTTAGCGTTG 61.080 55.000 0.00 0.00 43.04 4.10
2878 3727 1.079875 CACGTATGGGCGTTAGCGTT 61.080 55.000 0.00 0.00 43.83 4.84
2879 3728 1.517694 CACGTATGGGCGTTAGCGT 60.518 57.895 0.00 0.00 43.83 5.07
2880 3729 1.517694 ACACGTATGGGCGTTAGCG 60.518 57.895 0.00 0.00 43.83 4.26
2881 3730 1.426041 CCACACGTATGGGCGTTAGC 61.426 60.000 4.49 0.00 43.83 3.09
2882 3731 0.108520 ACCACACGTATGGGCGTTAG 60.109 55.000 18.83 0.00 44.81 2.34
2883 3732 0.390078 CACCACACGTATGGGCGTTA 60.390 55.000 18.83 0.00 44.81 3.18
2884 3733 1.669760 CACCACACGTATGGGCGTT 60.670 57.895 18.83 0.00 44.81 4.84
2885 3734 2.047655 CACCACACGTATGGGCGT 60.048 61.111 18.83 0.00 44.81 5.68
2886 3735 1.809619 CTCACCACACGTATGGGCG 60.810 63.158 18.83 8.06 44.81 6.13
2887 3736 0.460284 CTCTCACCACACGTATGGGC 60.460 60.000 18.83 0.00 44.81 5.36
2888 3737 0.895530 ACTCTCACCACACGTATGGG 59.104 55.000 18.83 6.41 44.81 4.00
2889 3738 2.743636 AACTCTCACCACACGTATGG 57.256 50.000 12.34 12.34 46.10 2.74
2890 3739 3.924686 GGTTAACTCTCACCACACGTATG 59.075 47.826 5.42 0.00 32.74 2.39
2891 3740 3.056322 GGGTTAACTCTCACCACACGTAT 60.056 47.826 5.42 0.00 34.36 3.06
2892 3741 2.297033 GGGTTAACTCTCACCACACGTA 59.703 50.000 5.42 0.00 34.36 3.57
2893 3742 1.069668 GGGTTAACTCTCACCACACGT 59.930 52.381 5.42 0.00 34.36 4.49
2894 3743 1.792006 GGGTTAACTCTCACCACACG 58.208 55.000 5.42 0.00 34.36 4.49
2895 3744 1.792006 CGGGTTAACTCTCACCACAC 58.208 55.000 3.52 0.00 34.36 3.82
2896 3745 0.034337 GCGGGTTAACTCTCACCACA 59.966 55.000 3.52 0.00 34.36 4.17
2897 3746 0.672711 GGCGGGTTAACTCTCACCAC 60.673 60.000 3.52 0.00 34.36 4.16
2898 3747 1.675219 GGCGGGTTAACTCTCACCA 59.325 57.895 3.52 0.00 34.36 4.17
2899 3748 1.078637 GGGCGGGTTAACTCTCACC 60.079 63.158 3.52 2.33 0.00 4.02
2900 3749 0.672711 GTGGGCGGGTTAACTCTCAC 60.673 60.000 3.52 7.05 0.00 3.51
2901 3750 1.122632 TGTGGGCGGGTTAACTCTCA 61.123 55.000 3.52 0.00 0.00 3.27
2902 3751 0.672711 GTGTGGGCGGGTTAACTCTC 60.673 60.000 3.52 0.00 0.00 3.20
2903 3752 1.373812 GTGTGGGCGGGTTAACTCT 59.626 57.895 3.52 0.00 0.00 3.24
2904 3753 2.030958 CGTGTGGGCGGGTTAACTC 61.031 63.158 5.42 0.00 0.00 3.01
2905 3754 2.031465 CGTGTGGGCGGGTTAACT 59.969 61.111 5.42 0.00 0.00 2.24
2906 3755 3.729698 GCGTGTGGGCGGGTTAAC 61.730 66.667 0.00 0.00 0.00 2.01
2912 3761 3.096633 TTATAGGGCGTGTGGGCGG 62.097 63.158 0.00 0.00 43.46 6.13
2913 3762 1.885850 GTTATAGGGCGTGTGGGCG 60.886 63.158 0.00 0.00 43.46 6.13
2914 3763 1.093496 GTGTTATAGGGCGTGTGGGC 61.093 60.000 0.00 0.00 41.35 5.36
2915 3764 0.250793 TGTGTTATAGGGCGTGTGGG 59.749 55.000 0.00 0.00 0.00 4.61
2916 3765 1.365699 GTGTGTTATAGGGCGTGTGG 58.634 55.000 0.00 0.00 0.00 4.17
2917 3766 0.996462 CGTGTGTTATAGGGCGTGTG 59.004 55.000 0.00 0.00 0.00 3.82
2918 3767 0.108520 CCGTGTGTTATAGGGCGTGT 60.109 55.000 0.00 0.00 0.00 4.49
2919 3768 0.173935 TCCGTGTGTTATAGGGCGTG 59.826 55.000 0.00 0.00 0.00 5.34
2920 3769 0.174162 GTCCGTGTGTTATAGGGCGT 59.826 55.000 0.00 0.00 0.00 5.68
2921 3770 0.458669 AGTCCGTGTGTTATAGGGCG 59.541 55.000 0.00 0.00 32.82 6.13
2922 3771 2.542411 CGTAGTCCGTGTGTTATAGGGC 60.542 54.545 0.00 0.00 0.00 5.19
2923 3772 2.542411 GCGTAGTCCGTGTGTTATAGGG 60.542 54.545 0.00 0.00 39.32 3.53
2924 3773 2.542411 GGCGTAGTCCGTGTGTTATAGG 60.542 54.545 0.00 0.00 39.32 2.57
2925 3774 2.097954 TGGCGTAGTCCGTGTGTTATAG 59.902 50.000 0.00 0.00 39.32 1.31
2926 3775 2.090760 TGGCGTAGTCCGTGTGTTATA 58.909 47.619 0.00 0.00 39.32 0.98
2927 3776 0.889994 TGGCGTAGTCCGTGTGTTAT 59.110 50.000 0.00 0.00 39.32 1.89
2928 3777 0.889994 ATGGCGTAGTCCGTGTGTTA 59.110 50.000 0.00 0.00 39.32 2.41
2929 3778 0.669318 CATGGCGTAGTCCGTGTGTT 60.669 55.000 0.00 0.00 36.46 3.32
2930 3779 1.080093 CATGGCGTAGTCCGTGTGT 60.080 57.895 0.00 0.00 36.46 3.72
2931 3780 1.080093 ACATGGCGTAGTCCGTGTG 60.080 57.895 6.84 0.00 46.46 3.82
2932 3781 3.373226 ACATGGCGTAGTCCGTGT 58.627 55.556 0.00 2.06 44.64 4.49
2933 3782 1.076533 GTGACATGGCGTAGTCCGTG 61.077 60.000 0.00 0.80 43.12 4.94
2934 3783 1.214589 GTGACATGGCGTAGTCCGT 59.785 57.895 0.00 0.00 39.32 4.69
2935 3784 1.518572 GGTGACATGGCGTAGTCCG 60.519 63.158 0.00 0.00 40.40 4.79
2936 3785 1.518572 CGGTGACATGGCGTAGTCC 60.519 63.158 0.00 0.00 33.89 3.85
2937 3786 2.165301 GCGGTGACATGGCGTAGTC 61.165 63.158 0.00 0.00 35.37 2.59
2938 3787 2.125673 GCGGTGACATGGCGTAGT 60.126 61.111 0.00 0.00 0.00 2.73
2939 3788 1.521457 ATGCGGTGACATGGCGTAG 60.521 57.895 0.00 0.00 0.00 3.51
2940 3789 1.813337 CATGCGGTGACATGGCGTA 60.813 57.895 0.00 0.00 43.05 4.42
2941 3790 3.126879 CATGCGGTGACATGGCGT 61.127 61.111 0.00 0.00 43.05 5.68
2942 3791 4.541482 GCATGCGGTGACATGGCG 62.541 66.667 0.00 0.00 46.14 5.69
2943 3792 2.287457 AATGCATGCGGTGACATGGC 62.287 55.000 14.09 0.00 46.14 4.40
2944 3793 0.173935 AAATGCATGCGGTGACATGG 59.826 50.000 14.09 0.00 46.14 3.66
2946 3795 0.173935 CCAAATGCATGCGGTGACAT 59.826 50.000 14.09 0.00 0.00 3.06
2947 3796 0.892814 TCCAAATGCATGCGGTGACA 60.893 50.000 14.09 0.00 0.00 3.58
2948 3797 0.243365 TTCCAAATGCATGCGGTGAC 59.757 50.000 14.09 0.00 0.00 3.67
2949 3798 0.964700 TTTCCAAATGCATGCGGTGA 59.035 45.000 14.09 2.14 0.00 4.02
2950 3799 1.928503 GATTTCCAAATGCATGCGGTG 59.071 47.619 14.09 10.46 0.00 4.94
2951 3800 1.826720 AGATTTCCAAATGCATGCGGT 59.173 42.857 14.09 0.67 0.00 5.68
2952 3801 2.589798 AGATTTCCAAATGCATGCGG 57.410 45.000 14.09 8.17 0.00 5.69
2953 3802 4.932268 AAAAGATTTCCAAATGCATGCG 57.068 36.364 14.09 0.00 0.00 4.73
2954 3803 5.181622 TCCAAAAAGATTTCCAAATGCATGC 59.818 36.000 11.82 11.82 0.00 4.06
2955 3804 6.804770 TCCAAAAAGATTTCCAAATGCATG 57.195 33.333 0.00 0.00 0.00 4.06
2956 3805 8.411991 AAATCCAAAAAGATTTCCAAATGCAT 57.588 26.923 0.00 0.00 41.54 3.96
2957 3806 7.820578 AAATCCAAAAAGATTTCCAAATGCA 57.179 28.000 0.00 0.00 41.54 3.96
2958 3807 8.351461 TGAAAATCCAAAAAGATTTCCAAATGC 58.649 29.630 0.36 0.00 43.90 3.56
2959 3808 9.887406 CTGAAAATCCAAAAAGATTTCCAAATG 57.113 29.630 0.36 0.00 43.90 2.32
2960 3809 9.631257 ACTGAAAATCCAAAAAGATTTCCAAAT 57.369 25.926 0.36 0.00 43.90 2.32
2961 3810 9.460019 AACTGAAAATCCAAAAAGATTTCCAAA 57.540 25.926 0.36 0.00 43.90 3.28
2962 3811 9.460019 AAACTGAAAATCCAAAAAGATTTCCAA 57.540 25.926 0.36 0.00 43.90 3.53
2963 3812 9.460019 AAAACTGAAAATCCAAAAAGATTTCCA 57.540 25.926 0.36 0.00 43.90 3.53
3006 3855 9.801873 GGATCTTCAATCGGATTTTTCATTTAA 57.198 29.630 0.00 0.00 0.00 1.52
3007 3856 8.965819 TGGATCTTCAATCGGATTTTTCATTTA 58.034 29.630 0.00 0.00 0.00 1.40
3008 3857 7.839907 TGGATCTTCAATCGGATTTTTCATTT 58.160 30.769 0.00 0.00 0.00 2.32
3009 3858 7.408756 TGGATCTTCAATCGGATTTTTCATT 57.591 32.000 0.00 0.00 0.00 2.57
3010 3859 7.592885 ATGGATCTTCAATCGGATTTTTCAT 57.407 32.000 0.00 0.00 0.00 2.57
3011 3860 7.408756 AATGGATCTTCAATCGGATTTTTCA 57.591 32.000 0.00 0.00 0.00 2.69
3012 3861 8.707938 AAAATGGATCTTCAATCGGATTTTTC 57.292 30.769 0.00 0.00 0.00 2.29
3013 3862 8.313292 TGAAAATGGATCTTCAATCGGATTTTT 58.687 29.630 0.00 0.00 0.00 1.94
3014 3863 7.761249 GTGAAAATGGATCTTCAATCGGATTTT 59.239 33.333 0.00 0.00 33.52 1.82
3015 3864 7.260603 GTGAAAATGGATCTTCAATCGGATTT 58.739 34.615 0.00 0.00 33.52 2.17
3016 3865 6.183360 GGTGAAAATGGATCTTCAATCGGATT 60.183 38.462 0.00 0.00 33.52 3.01
3017 3866 5.300286 GGTGAAAATGGATCTTCAATCGGAT 59.700 40.000 0.00 0.00 33.52 4.18
3018 3867 4.640201 GGTGAAAATGGATCTTCAATCGGA 59.360 41.667 0.00 0.00 33.52 4.55
3019 3868 4.398988 TGGTGAAAATGGATCTTCAATCGG 59.601 41.667 0.00 0.00 33.52 4.18
3020 3869 5.565592 TGGTGAAAATGGATCTTCAATCG 57.434 39.130 0.00 0.00 33.52 3.34
3021 3870 9.874205 TTTAATGGTGAAAATGGATCTTCAATC 57.126 29.630 0.00 0.00 33.52 2.67
3024 3873 9.874205 GAATTTAATGGTGAAAATGGATCTTCA 57.126 29.630 0.00 0.00 0.00 3.02
3025 3874 9.317936 GGAATTTAATGGTGAAAATGGATCTTC 57.682 33.333 0.00 0.00 0.00 2.87
3026 3875 9.050154 AGGAATTTAATGGTGAAAATGGATCTT 57.950 29.630 0.00 0.00 0.00 2.40
3027 3876 8.613922 AGGAATTTAATGGTGAAAATGGATCT 57.386 30.769 0.00 0.00 0.00 2.75
3028 3877 8.477256 TGAGGAATTTAATGGTGAAAATGGATC 58.523 33.333 0.00 0.00 0.00 3.36
3029 3878 8.378115 TGAGGAATTTAATGGTGAAAATGGAT 57.622 30.769 0.00 0.00 0.00 3.41
3030 3879 7.789202 TGAGGAATTTAATGGTGAAAATGGA 57.211 32.000 0.00 0.00 0.00 3.41
3031 3880 8.259411 TCATGAGGAATTTAATGGTGAAAATGG 58.741 33.333 0.00 0.00 0.00 3.16
3032 3881 9.090692 GTCATGAGGAATTTAATGGTGAAAATG 57.909 33.333 0.00 0.00 0.00 2.32
3033 3882 7.975616 CGTCATGAGGAATTTAATGGTGAAAAT 59.024 33.333 9.87 0.00 0.00 1.82
3034 3883 7.175816 TCGTCATGAGGAATTTAATGGTGAAAA 59.824 33.333 15.47 0.00 0.00 2.29
3035 3884 6.657117 TCGTCATGAGGAATTTAATGGTGAAA 59.343 34.615 15.47 0.00 0.00 2.69
3036 3885 6.176896 TCGTCATGAGGAATTTAATGGTGAA 58.823 36.000 15.47 0.00 0.00 3.18
3037 3886 5.739959 TCGTCATGAGGAATTTAATGGTGA 58.260 37.500 15.47 0.00 0.00 4.02
3038 3887 5.817296 TCTCGTCATGAGGAATTTAATGGTG 59.183 40.000 18.08 4.05 45.32 4.17
3039 3888 5.989477 TCTCGTCATGAGGAATTTAATGGT 58.011 37.500 18.08 0.00 45.32 3.55
3040 3889 6.933521 AGATCTCGTCATGAGGAATTTAATGG 59.066 38.462 18.08 5.34 45.32 3.16
3041 3890 7.959689 AGATCTCGTCATGAGGAATTTAATG 57.040 36.000 18.08 6.00 45.32 1.90
3042 3891 7.383572 CGAAGATCTCGTCATGAGGAATTTAAT 59.616 37.037 18.08 7.75 45.32 1.40
3043 3892 6.697455 CGAAGATCTCGTCATGAGGAATTTAA 59.303 38.462 18.08 3.72 45.32 1.52
3044 3893 6.209361 CGAAGATCTCGTCATGAGGAATTTA 58.791 40.000 18.08 5.88 45.32 1.40
3045 3894 5.046529 CGAAGATCTCGTCATGAGGAATTT 58.953 41.667 18.08 10.23 45.32 1.82
3046 3895 4.615949 CGAAGATCTCGTCATGAGGAATT 58.384 43.478 18.08 10.84 45.32 2.17
3047 3896 4.235939 CGAAGATCTCGTCATGAGGAAT 57.764 45.455 18.08 13.87 45.32 3.01
3048 3897 3.699779 CGAAGATCTCGTCATGAGGAA 57.300 47.619 18.08 10.24 45.32 3.36
3086 3935 9.730420 CCCAAAAGAAAATCGTCGAAATATATT 57.270 29.630 0.00 0.00 0.00 1.28
3087 3936 8.899771 ACCCAAAAGAAAATCGTCGAAATATAT 58.100 29.630 0.00 0.00 0.00 0.86
3088 3937 8.271312 ACCCAAAAGAAAATCGTCGAAATATA 57.729 30.769 0.00 0.00 0.00 0.86
3089 3938 7.153217 ACCCAAAAGAAAATCGTCGAAATAT 57.847 32.000 0.00 0.00 0.00 1.28
3090 3939 6.563222 ACCCAAAAGAAAATCGTCGAAATA 57.437 33.333 0.00 0.00 0.00 1.40
3091 3940 5.447624 ACCCAAAAGAAAATCGTCGAAAT 57.552 34.783 0.00 0.00 0.00 2.17
3092 3941 4.904253 ACCCAAAAGAAAATCGTCGAAA 57.096 36.364 0.00 0.00 0.00 3.46
3093 3942 4.904253 AACCCAAAAGAAAATCGTCGAA 57.096 36.364 0.00 0.00 0.00 3.71
3094 3943 6.374565 TTTAACCCAAAAGAAAATCGTCGA 57.625 33.333 0.00 0.00 0.00 4.20
3106 3955 3.056035 ACACGGCAACTTTTAACCCAAAA 60.056 39.130 0.00 0.00 34.89 2.44
3107 3956 2.496470 ACACGGCAACTTTTAACCCAAA 59.504 40.909 0.00 0.00 0.00 3.28
3108 3957 2.099427 GACACGGCAACTTTTAACCCAA 59.901 45.455 0.00 0.00 0.00 4.12
3109 3958 1.677052 GACACGGCAACTTTTAACCCA 59.323 47.619 0.00 0.00 0.00 4.51
3110 3959 1.951602 AGACACGGCAACTTTTAACCC 59.048 47.619 0.00 0.00 0.00 4.11
3111 3960 5.366829 AATAGACACGGCAACTTTTAACC 57.633 39.130 0.00 0.00 0.00 2.85
3112 3961 6.890558 TGTAATAGACACGGCAACTTTTAAC 58.109 36.000 0.00 0.00 31.20 2.01
3123 3972 7.011389 ATGACAATTCATGTGTAATAGACACGG 59.989 37.037 0.00 0.00 46.77 4.94
3124 3973 7.909267 ATGACAATTCATGTGTAATAGACACG 58.091 34.615 0.00 0.00 46.77 4.49
3138 3987 8.339344 TCAGTGTAAACATCATGACAATTCAT 57.661 30.769 0.00 0.00 43.80 2.57
3139 3988 7.742556 TCAGTGTAAACATCATGACAATTCA 57.257 32.000 0.00 0.00 35.73 2.57
3140 3989 8.292448 ACTTCAGTGTAAACATCATGACAATTC 58.708 33.333 0.00 0.00 0.00 2.17
3141 3990 8.169977 ACTTCAGTGTAAACATCATGACAATT 57.830 30.769 0.00 0.00 0.00 2.32
3142 3991 7.750229 ACTTCAGTGTAAACATCATGACAAT 57.250 32.000 0.00 0.00 0.00 2.71
3143 3992 7.416817 CAACTTCAGTGTAAACATCATGACAA 58.583 34.615 0.00 0.00 0.00 3.18
3144 3993 6.513230 GCAACTTCAGTGTAAACATCATGACA 60.513 38.462 0.00 0.00 0.00 3.58
3145 3994 5.853282 GCAACTTCAGTGTAAACATCATGAC 59.147 40.000 0.00 0.00 0.00 3.06
3146 3995 5.048782 GGCAACTTCAGTGTAAACATCATGA 60.049 40.000 0.00 0.00 0.00 3.07
3147 3996 5.156355 GGCAACTTCAGTGTAAACATCATG 58.844 41.667 0.00 0.00 0.00 3.07
3148 3997 4.826733 TGGCAACTTCAGTGTAAACATCAT 59.173 37.500 0.00 0.00 37.61 2.45
3149 3998 4.203226 TGGCAACTTCAGTGTAAACATCA 58.797 39.130 0.00 0.00 37.61 3.07
3150 3999 4.829064 TGGCAACTTCAGTGTAAACATC 57.171 40.909 0.00 0.00 37.61 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.