>input_sequence_58592
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----------------------------------------ATGTTCCGCTTCTCGGCCACGCTCTGTGTTGCCACCATCG
GAAACTGCAACCTTCCGGACAGCACCGTCCAAGGGCTTCACTTCCCCCTGCTTAAGCAGCTCGGACTTGAACTCGTCAGC
ATCTCGGAGTGCTCACTGCACAGCTTGATTGCCAGTTGCCCTGCTGTGGAGTGCTTGCTGATTAGCCATGGATTCGGCTT
TTGCTGCCTCAGGATCAACTCCCTTACCCTTAGAAGCTTTGCTGTCAAGAACTATCGGAAAGGCAATGACCAGTTAAAGG
AACTAGTTGTCGAGAATGCGCCTTGCCTTCAAAGCTTGCTCCATCTTGATTTTGACTATGGTTTGCATATATCAGTGGTC
TCCGCGCCTAAACTGGAGACCCTAGGCTGCCTTTCTGATGGGTTTTACATCTCCAAACCAGATGATCTCTCTAGATTCGT
GTTTGGCTCCACAGTTATTCAGGTACC----TTTGGCCATCCTACTTGTTACCTTCACGCGGCTTCTCAGTTTCATCTCT
GTATGCAGGAAAAATAAAACCATGTGCACTTGTCGTTGGCCTAATTTTGTCTATGATGCTTGATGAAGGGCTTGCGTGTC
GATAGACTGACAACGGTGGTGCACGCAGTGAAGAATTTAGCTGTCAATATGAAGATTCTTAGTTTGGATACAATTATCGA
GTTGATGCGATGCTTTCCATGCTTGGAGAAGATATATATTGAGGTGAAAATTCTTCATTTATAATTCATTGCCTTCAAAT
GCTCATTTGATCTACTTACTGAACTGAAGTGGTTGGTTTCCATTTGTCCATGTTCTTTTTCAGTCAGAGTCAAAGAAGGA
AAAAAATGTGCGCGGTCGCAAACACCGGAATCTTACCAAATGTCCTAACATCCGTCTAAAGACAATAGTATTTGAATGTT
ATGAGGGTATTAAGTCTGACATCGAATTTGCTTCATTCTTTGTACTGAACGCTACAGTGCTGGAGTTAATGAAACTTCAG
ATCAGAGCCAGGGATTATAATGAACAATTCTTGGCAGAACAACGTAGGAAGCTTCAGCTAGTAAACAAGGCTTCACGAGG
TGCTCGGTTTCATTTTACAACTGATAAATGTGCCCGTGGTGTTTGGGATGTGCATCATGTCCGTGACTTGGATTTAACTG
ATCCATTTGTATGTTGA---------------------------------------------------------------
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>chr5D_1_TraesCS5D01G081500
CTCAGAAAAGTGGTAAAAAAACCTTTCTGTAAATTATACGGTCATCATGTAAAACGACTTTTACTAGACGTTTTGAGGGG
AGCTATTGGATTTCCTCTTAGCTCGTCAAGTTTTTTTTTTGGTTAGGCAATCTTACTCTTTTTTTTTTTTTTGAGANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCCCCTCCGCCCACAACCAACAACCGCCGCCCGGAGCGGGCGAGGATGAAGGAAGCGCCGACCGCATC
AGCAACCTCCCCGACACCATCCTCGGCGAGATCGTCTCCCGCCTCCCCACCAACCAAGGCGCTCGCACCCAGATCCTCGC
GCCCCGGTGGCGCCACATCTGGAGCTCCGCGCCTCTTACCATCGACTGCGAAGGCCTCCCCGCCGATAACGAGGTACTCG
CCGGCATCGTCTCGCGTACGGTTTCAACGCATCCGCCCCCCTGCCACCGCTTCTGCGTCCCCTCGTGCTTCCTCGGCGAC
CGAGCGTCTACTGTGGACAAATGGCTCCGAACCTCCGCTCTGGACAACCTCCAGGAGCTGGAGTTCTGGTTCAAGCCATA
CTATCGACCGCAGCCGCTGCAGCATCCGCCACCATCGTCCATGTTCCGCTTCTCGGCCACGCTCTGTGTTGCCACCATCG
GAAACTGCAACCTTCCGGACAGCACCGTCCAAGGGCTTCACTTCCCCCTGCTTAAGCAGCTCGGACTTGAACTCGTCAGC
ATCTCGGAGTGCTCACTGCACAGCTTGATTGCCAGTTGCCCTGCTGTGGAGTGCTTGCTGATTAGCCATGGATTCGGCTT
TTGCTGCCTCAGGATCAACTCCCTTACCCTTAGAAGCTTTGCTGTCAAGAACTATCGGAAAGGCAATGACCAGTTAAAGG
AACTAGTTGTCGAGAATGCGCCTTGCCTTCAAAGCTTGCTCCATCTTGATTTTGACTATGGTTTGCATATATCAGTGGTC
TCCGCGCCTAAACTGGAGACCCTAGGCTGCCTTTCTGATGGGTTTTACATCTCCAAACCAGATGATCTCTCTAGATTCGT
GTTTGGCTCCACAGTTATTCAGGTACC----TTTGGCCATCCTACTTGTTACCTTCACGCGGCTTCTCAGTTTCATCTCT
GTATGCAGGAAAAATAAAACCATGTGCACTTGTCGTTGGCCTAATTTTGTCTATGATGCTTGATGAAGGGCTTGCGTGTC
GATAGACTGACAACGGTGGTGCACGCAGTGAAGAATTTAGCTGTCAATATGAAGATTCTTAGTTTGGATACAATTATCGA
GTTGATGCGATGCTTTCCATGCTTGGAGAAGATATATATTGAGGTGAAAATTCTTCATTTATAATTCATTGCCTTCAAAT
GCTCATTTGATCTACTTACTGAACTGAAGTGGTTGGTTTCCATTTGTCCATGTTCTTTTTCAGTCAGAGTCAAAGAAGGA
AAAAAATGTGCGCGGTCGCAAACACCGGAATCTTACCAAATGTCCTAACATCCGTCTAAAGACAATAGTATTTGAATGTT
ATGAGGGTATTAAGTCTGACATCGAATTTGCTTCATTCTTTGTACTGAACGCTACAGTGCTGGAGTTAATGAAACTTCAG
ATCAGAGCCAGGGATTATAATGAACAATTCTTGGCAGAACAACGTAGGAAGCTTCAGCTAGTAAACAAGGCTTCACGAGG
TGCTCGGTTTCATTTTACAACTGATAAATGTGCCCGTGGTGTTTGGGATGTGCATCATGTCCGTGACTTGGATTTAACTG
ATCCATTTGTATGTTGAAACTAGCACTTGTCCATTTTAGAATTATTCTTCAATGTTAGCCTATCTCGGTTGTTATCCTGT
CAAAACTTGATTGCTTTTGGTGTTTGCCGTTTTTGTAAGTTTATATT------------------TTACGCTAGCTGTTT
GTGTCCTAACATGTAA-------CAGCCTTGCAATTTATGAAGCATAGGGTAATCTGATTGTCATATTGAGGATTAATTA
ACAATTGTATGGTAGCTACATTTGATTTC---------------------------------------------------
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------------------------------------------------TGGTGAAACACCACCAACATATGGGAAATCTG
CCCGACCAGTGTTCATAATCTGGAGTAAATGGATTTGAATGTGGTTCCTTTTTGTATAACCTATGGCTGAATGTTGTTAT
AATTCAAGTTTTGTGTGGTCATTTAAGTTGAAGTTGTGTTTCGAGTCTAATTTGTCATATTTTCCAATAAAAAAAGGAAC
ATTGCATGGATGCATATATGCATGTCCTGTGTTGTTTTGGCAAGGAAAATACTTGTCCATCAGTACTAGCGTGATATACT
TTTGCTTCTAAGATTTTTTCATGAAATCAATTTGCTAATCTTAGCATTGACCGCCTTTTTTGGTTGGGTATCATAAGTGA
AAATTCACGTTTGAGCGACCAGCATAGTGTTTTCATTTTGTAGTATTTCAAGACTTGACTAAATTTCGATCTTGTTTGCC
AAAATTTGGCGTACATCTTCTTCGTGGAGTATATTTAATTATGGACAACGCTAACGCCCATACGTGTGGTGAGAGTTAAC
CCGCCCACACGCCCTATAACACACGGACTACGCCATGTCACCGCATGCATTTGGAAATCTTTTTGGATTTTCAGTTTTTA
AAATGTTTTATCTCTTAAATGAAAAATCCGATTGAAGATCCATTTTCACCATTAAATTCCTCATGACGAGATCTTCGAAA
CTAGATCTCATATCAATATATTTCGACGATTTTCTTTTGGGTTAAAAGTTGCCGTGTCTATTACACATGAATTGTCATGA
TGTTTACACTGAAGTTGCCAT
>chr5A_573
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------------CCCCCTCCGCCCACAACCAACAACCGCCGCCCGGAGCGGGCGAGGATGAAGAAAGCGCCGACCGCATC
AGCAACCTCCCCGACGCCATCCTCGGCGAAATCGTCTCCCGCCTCCCCACCAACCAAGGCGCCCGCACCCAGATCCTCGC
GCACCGGTGGCGCCACATCTGGAGCTCCGCGCCTCTTAGCATCGACTGCGAGGGCCTCCCCGCCGATAACGAGGTACTCG
CCGGCATCGTCTCGCGCACGGTTTCAACGCATCCGCCCCCCTGCCGCCGCTTCTGCGTCCCCTCGTGCTTCCTCGGCGAC
CGAGCCTCCACGGTGGACAAATGGCTCCGAACCCCCGCCCTGGACAACCTCCAGGAGCTGGAGTTCTGGTTCAAACCGTA
CTATCGACCGCAGCCGCTGCAGCAGCCGCCACCATCGTCCATGTTCCGCTTCTCGGCCACGCTCTGTGTTGCCACCATCG
GAAACTGCAACCTTCCGGACAGCACCGTCCAAGGGCTTCACTTCCCCCTGCTTAAGCAGCTCGGACTTGAACTTGTCAGC
ATCTCGGAGTGCTCACTGCACAGCTTGATTGCCAGTTGCCCTGCTTTGGAGTGCTTGCTGGTTAGCCATGGATTCGGCTT
TCGCTGCCTCAGGATCAACTCCCTTACCCTTAGAAGCTTTGCTGTCAAGAACTATCGGAAAGGCAATGACCAGTTAAAGG
AACTCATTGTCGAGAATGCACCTTGCCTTCAAAGGTTGCTGCATCTTGATTTTGACTATGGTCTGCATATATCGGTAGTG
TCCGCGCCTAAACTGGAGAGCATAGGCTGCCTTTCTGATGGGTTTTACATTTCCAAAGAGGATGATCTCTCCAGACTCGT
GTTTGGCTCCACGGTTATTCAGGTACTCGTGTTTGGCCATCCTACTTGTTGCCTTCATGAGGCTTCTCAGTTTTATCTCT
GTCTGCAGGAAAAATAACACCATGTGCACTTGTCGTTGGCCTAATTTTGTCTATGATGCTTGATGAAGGGCTTGCGTGTC
GATAGACTGACAACGGTGGTGCACACAGTGAAGAATTTAGCTGTCAATATGAAGCTTCTTAGTTTGGATACAATTATCGA
GTTGATGCGATGCTTTCCGTGCTTGGAGAAGATGTACATTGAGGTGAAAGTTCTTCATTTATAATTCTTTGCCTTCAAAT
GCTCATTTGATCTACTTGCTGAACCGAAGTGGTTGGTTTCCATTTGTCCATGTTCTTTTTCAGTCAGAGTCGAAGAAGGA
AAAAAGTGTGCGCGGTCGCAGACACCGGAATCTTACCAAATGTCCTAACATCCGTCTAAAGACAATAGTATTTGAATGTT
ATGAGGGTATTAAGTCTGACATTGAATTTGCTTCATTCTTTGTACTGAACGCTACAGTGCTTGAGTTAATGACACTTCAG
ATCGGGGCCAGGGATTACAATGAAAAATTCTTGGCAGAACAACGTAGGAAGCTTCAGCTAGAAAACAAGGCTTCAAGAGG
TGCTCGGTTTCATTTTACAACTGATAGATGTGCCCGTGGTGTTTGGGATGTGCATCATGTCCGTGACTTGGATTTAACTG
ATCCATTTGTATGAGTAAAGTGGCTCTTGTCCATTTTGGAATTGTTCTTCAATGTTAACCTATCTCAGTTATTATTCTGG
CAAAACTTGATTGCTTTTGGTGTTTGCCGTTGTTGTATGTTTATATTATCTGAAACCTCAAACATTTAAACTAGCTGTTT
GTGTCTTATGATATAACATGTGGCAGCCTTGCAATTTATGAAGCACAGGGTAATCTGATTGTAATATTGAGGACTAATTA
AGAATGGTAGGGTAGCTACAACTTATTTTGATTTCTGGTGAAAGGAATAGGAAGTTAGAGTTATGGAGACAAACCTTGGA
ATCGAAAGGGTTTAGGCTTAGTAGAACTAAAATCGAGTACATGATGTGCGGTTTCAGTACTACTAGCTGTGAGGAGGAGG
AGGTTAGCCTTGATGGCCAGGTGGTACCTCGGAAGGACACCTTTCGGTATTTGGGGTCAATGTTGCAGGAGGATGGGGGT
ATTGATGAAGATGTGAACCATCGAATCAAAGCCGGATGGATGAAGTGGCGCCAAGCTTCTGGCATTCTCTGTGACAAGAG
AGTGCCACAAAAGGTAAAAGGCAAGTTCTACAGGACGGCGGTTCGACCCGCAATGTTGTATGGCGCGGAGTGTTGGCCGA
CTAAAAGACGACATGTTCAACAGTTATGTGTGGCGGAGATGCGTATGTTGAGATGGATGTGTGGCCACACGAGGAAGGAT
CGAGTCCAGAATGATGATATACGAGATAGAGTTGGGGTAGCACCAATTGAGGAGAAGCTTGTCCAACATCGTTTGAGATG
GTTTGGGCATATTCAGCGCAGGCCTCCGGAAGCTCCAGTGCATAGCGGATGGCTAAAGCGTGCGGAGAATGTCAAGAGAG
GGCGGGGTCGACCGATTTTGACATGGGAGGAGTCCGTTAAGAGAGACCTGAAGGATTGGAGTATCGACAAAAAGCTAGCT
ATGAACAGGGGTGCGTGGAAGCTTGCTATCCATGTGCCAGAGTCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCT
AGCCTACCCCAACTTGCTTGGGACTAAAGGCTTTGTTGTTGTTGGTGGTGGTGAAACACCACCAACGTATGGGAAATCTG
CCCGACCAGTGCTCATAATCTGGAGTAAAAGGATTTGATTGCAGTTCCTTTTTATATAACATATGGCTGAATATTGTTAT
AATTCAAGTTTTGTGTGGTCATTTAAGTCAAAGTTGTGCTTCGAGTCTAATTTATCATGTTTTCTAATCGAAAGAGGAAC
---------------ATATGCATGCCCTGTGTTGTTTTGGCAAGGAAATCAATTGTCCATCAGTACTAGCGTGCTATACT
TTTGCTTCTAAGAAATTTTCTTTAAATTTATTTGCTAATCTTAGCATTGACGGCCTTGTTCGGTTGGGCATCATGACTGA
AAATTCATGATTGTGTGACCAGCATAGTGTTTTCATTTCGGAGTATTT--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---------------------------------------------------S----------------
---------------S-------------S--------------------------------S-----------------
--S-----------------------------------S------------S----------------------------
----------------S----------------------------S----------------------------------
-----S--S--S---------------------S----S-----------------------------------S--S--
------------------------S-------------------------------------------------------
-------------------------------------------------------------------------S------
---------------------------------------------S--------------S-------------------
-S------------------------------------------------------------------------------
----SS-------------S--------------S-----S---------------------S----------S--S--S
-------------------S-S----------------------------S------SSS-----------S---S----
------------S-------------S-----------------------S------S-S-------------S------
--S--------------S--------------------------------------------------------------
------------------------S-----------------------------S-------------------------
------------------S--------------S--S------------S-----------------S------------
-----------------S------S----------------------------------------------S--------
-----S--------------S-----------------------------------------------------------
----------------------S--------------------------------------S----------S-------
---S-S-----------S------S------------------------------------S-------------S----
--------------------------S-----------------------------------------------------
-------------SSS---S-S--S------------S-----S-------------S--------S---S----S---S
-------------------------------S-----S------------------------------SS----------
-----S--SS--S--------------------------------S----------------S----------S------
-S---S---S----------SS-S----S---------------------------------------------------
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------------------------------------------------------------------S-------------
-----------S-----------------S--------S--SS----------S------S-----------S-------
----------------------------SS--------S--------------S----S-----S---SS---S------
SSSSSSSSSSSSSSS---------S-----------------------SS-S---------------------S------
-------------SS-----S-S----SS----------------------S-----S--S-------S-----S-S---
-------S-S---S-S----------------------S-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_914
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--------------GGACAAATGGCTCCGAACCT----------------------------------------------
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>reverse_3745
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----------------------------------------------------------------TGTGGTGAGAGTTAAC
CCGC----------------------------------------------------------------------------
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