Multiple sequence alignment - TraesCS5D01G075300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G075300 chr5D 100.000 2521 0 0 1 2521 74468570 74466050 0.000000e+00 4656.0
1 TraesCS5D01G075300 chr5D 87.179 117 13 1 1881 1997 510939471 510939585 5.660000e-27 132.0
2 TraesCS5D01G075300 chr5D 73.333 420 80 24 1595 1995 354521743 354522149 2.630000e-25 126.0
3 TraesCS5D01G075300 chr5B 88.260 2138 136 46 456 2521 77708154 77710248 0.000000e+00 2451.0
4 TraesCS5D01G075300 chr5B 87.079 178 17 5 182 355 77707964 77708139 1.980000e-46 196.0
5 TraesCS5D01G075300 chr5B 84.821 112 13 3 1886 1995 418915983 418916092 2.650000e-20 110.0
6 TraesCS5D01G075300 chr5A 88.942 1257 71 26 201 1410 69868862 69867627 0.000000e+00 1489.0
7 TraesCS5D01G075300 chr5A 94.521 73 4 0 82 154 69869159 69869087 2.050000e-21 113.0
8 TraesCS5D01G075300 chr5A 100.000 30 0 0 1889 1918 229516654 229516683 3.500000e-04 56.5
9 TraesCS5D01G075300 chr1A 97.222 72 2 0 1 72 307486073 307486144 3.410000e-24 122.0
10 TraesCS5D01G075300 chr3A 95.833 72 3 0 1 72 466481404 466481475 1.580000e-22 117.0
11 TraesCS5D01G075300 chr4D 81.818 110 13 5 1891 1997 509432881 509432776 4.470000e-13 86.1
12 TraesCS5D01G075300 chr1B 89.091 55 6 0 1890 1944 512732815 512732761 4.500000e-08 69.4
13 TraesCS5D01G075300 chr7A 94.444 36 2 0 1889 1924 385325963 385325928 3.500000e-04 56.5
14 TraesCS5D01G075300 chr3B 100.000 30 0 0 1889 1918 428134589 428134618 3.500000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G075300 chr5D 74466050 74468570 2520 True 4656.0 4656 100.0000 1 2521 1 chr5D.!!$R1 2520
1 TraesCS5D01G075300 chr5B 77707964 77710248 2284 False 1323.5 2451 87.6695 182 2521 2 chr5B.!!$F2 2339
2 TraesCS5D01G075300 chr5A 69867627 69869159 1532 True 801.0 1489 91.7315 82 1410 2 chr5A.!!$R1 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 617 0.178068 GGGTCCTGCTTTAGCGATCA 59.822 55.0 0.0 0.0 45.83 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2674 0.179156 GTGCCACTTCAATGCGGATG 60.179 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.570930 CCTCCTCCTCAAACACTAGTTTC 58.429 47.826 0.00 0.00 45.80 2.78
23 24 4.284746 CCTCCTCCTCAAACACTAGTTTCT 59.715 45.833 0.00 0.00 45.80 2.52
24 25 5.221742 CCTCCTCCTCAAACACTAGTTTCTT 60.222 44.000 0.00 0.00 45.80 2.52
25 26 5.611374 TCCTCCTCAAACACTAGTTTCTTG 58.389 41.667 0.00 0.00 45.80 3.02
26 27 4.214332 CCTCCTCAAACACTAGTTTCTTGC 59.786 45.833 0.00 0.00 45.80 4.01
27 28 4.134563 TCCTCAAACACTAGTTTCTTGCC 58.865 43.478 0.00 0.00 45.80 4.52
28 29 3.253432 CCTCAAACACTAGTTTCTTGCCC 59.747 47.826 0.00 0.00 45.80 5.36
29 30 3.219281 TCAAACACTAGTTTCTTGCCCC 58.781 45.455 0.00 0.00 45.80 5.80
30 31 3.117663 TCAAACACTAGTTTCTTGCCCCT 60.118 43.478 0.00 0.00 45.80 4.79
31 32 3.595190 AACACTAGTTTCTTGCCCCTT 57.405 42.857 0.00 0.00 33.11 3.95
32 33 2.863809 ACACTAGTTTCTTGCCCCTTG 58.136 47.619 0.00 0.00 0.00 3.61
33 34 2.174854 ACACTAGTTTCTTGCCCCTTGT 59.825 45.455 0.00 0.00 0.00 3.16
34 35 3.393278 ACACTAGTTTCTTGCCCCTTGTA 59.607 43.478 0.00 0.00 0.00 2.41
35 36 4.003648 CACTAGTTTCTTGCCCCTTGTAG 58.996 47.826 0.00 0.00 0.00 2.74
36 37 2.586648 AGTTTCTTGCCCCTTGTAGG 57.413 50.000 0.00 0.00 34.30 3.18
37 38 1.780919 AGTTTCTTGCCCCTTGTAGGT 59.219 47.619 0.00 0.00 31.93 3.08
38 39 2.177016 AGTTTCTTGCCCCTTGTAGGTT 59.823 45.455 0.00 0.00 31.93 3.50
39 40 2.557056 GTTTCTTGCCCCTTGTAGGTTC 59.443 50.000 0.00 0.00 31.93 3.62
40 41 1.742308 TCTTGCCCCTTGTAGGTTCT 58.258 50.000 0.00 0.00 31.93 3.01
41 42 1.351017 TCTTGCCCCTTGTAGGTTCTG 59.649 52.381 0.00 0.00 31.93 3.02
42 43 1.073923 CTTGCCCCTTGTAGGTTCTGT 59.926 52.381 0.00 0.00 31.93 3.41
43 44 1.145571 TGCCCCTTGTAGGTTCTGTT 58.854 50.000 0.00 0.00 31.93 3.16
44 45 1.497286 TGCCCCTTGTAGGTTCTGTTT 59.503 47.619 0.00 0.00 31.93 2.83
45 46 1.886542 GCCCCTTGTAGGTTCTGTTTG 59.113 52.381 0.00 0.00 31.93 2.93
46 47 2.514803 CCCCTTGTAGGTTCTGTTTGG 58.485 52.381 0.00 0.00 31.93 3.28
47 48 2.158519 CCCCTTGTAGGTTCTGTTTGGT 60.159 50.000 0.00 0.00 31.93 3.67
48 49 3.146847 CCCTTGTAGGTTCTGTTTGGTC 58.853 50.000 0.00 0.00 31.93 4.02
49 50 3.434453 CCCTTGTAGGTTCTGTTTGGTCA 60.434 47.826 0.00 0.00 31.93 4.02
50 51 3.564225 CCTTGTAGGTTCTGTTTGGTCAC 59.436 47.826 0.00 0.00 0.00 3.67
51 52 3.202829 TGTAGGTTCTGTTTGGTCACC 57.797 47.619 0.00 0.00 0.00 4.02
52 53 2.775384 TGTAGGTTCTGTTTGGTCACCT 59.225 45.455 0.00 0.00 41.00 4.00
53 54 3.968649 TGTAGGTTCTGTTTGGTCACCTA 59.031 43.478 0.00 0.00 38.80 3.08
54 55 3.771577 AGGTTCTGTTTGGTCACCTAG 57.228 47.619 0.00 0.00 36.02 3.02
55 56 3.046374 AGGTTCTGTTTGGTCACCTAGT 58.954 45.455 0.00 0.00 36.02 2.57
56 57 3.139077 GGTTCTGTTTGGTCACCTAGTG 58.861 50.000 0.00 0.00 34.45 2.74
57 58 2.543777 TCTGTTTGGTCACCTAGTGC 57.456 50.000 0.00 0.00 32.98 4.40
58 59 1.765904 TCTGTTTGGTCACCTAGTGCA 59.234 47.619 0.00 0.00 32.98 4.57
59 60 2.171659 TCTGTTTGGTCACCTAGTGCAA 59.828 45.455 0.00 0.00 32.98 4.08
60 61 3.149196 CTGTTTGGTCACCTAGTGCAAT 58.851 45.455 0.00 0.00 32.98 3.56
61 62 3.561143 TGTTTGGTCACCTAGTGCAATT 58.439 40.909 0.00 0.00 32.98 2.32
62 63 3.957497 TGTTTGGTCACCTAGTGCAATTT 59.043 39.130 0.00 0.00 32.98 1.82
63 64 4.404073 TGTTTGGTCACCTAGTGCAATTTT 59.596 37.500 0.00 0.00 32.98 1.82
64 65 4.582701 TTGGTCACCTAGTGCAATTTTG 57.417 40.909 0.00 0.00 32.98 2.44
65 66 3.826524 TGGTCACCTAGTGCAATTTTGA 58.173 40.909 0.00 0.00 32.98 2.69
66 67 3.820467 TGGTCACCTAGTGCAATTTTGAG 59.180 43.478 0.00 0.00 32.98 3.02
67 68 3.366374 GGTCACCTAGTGCAATTTTGAGC 60.366 47.826 0.00 0.00 32.98 4.26
68 69 2.483877 TCACCTAGTGCAATTTTGAGCG 59.516 45.455 0.00 0.00 32.98 5.03
69 70 1.812571 ACCTAGTGCAATTTTGAGCGG 59.187 47.619 0.00 0.00 0.00 5.52
70 71 1.133025 CCTAGTGCAATTTTGAGCGGG 59.867 52.381 0.00 0.00 0.00 6.13
71 72 0.525761 TAGTGCAATTTTGAGCGGGC 59.474 50.000 0.00 0.00 0.00 6.13
72 73 2.088178 GTGCAATTTTGAGCGGGCG 61.088 57.895 0.00 0.00 0.00 6.13
73 74 2.258286 GCAATTTTGAGCGGGCGT 59.742 55.556 0.00 0.00 0.00 5.68
74 75 1.801512 GCAATTTTGAGCGGGCGTC 60.802 57.895 0.00 0.00 0.00 5.19
75 76 1.154035 CAATTTTGAGCGGGCGTCC 60.154 57.895 0.00 0.00 0.00 4.79
76 77 1.303317 AATTTTGAGCGGGCGTCCT 60.303 52.632 3.66 0.00 0.00 3.85
77 78 0.893727 AATTTTGAGCGGGCGTCCTT 60.894 50.000 3.66 0.00 0.00 3.36
78 79 0.893727 ATTTTGAGCGGGCGTCCTTT 60.894 50.000 3.66 0.00 0.00 3.11
79 80 1.512156 TTTTGAGCGGGCGTCCTTTC 61.512 55.000 3.66 1.57 0.00 2.62
80 81 3.894547 TTGAGCGGGCGTCCTTTCC 62.895 63.158 3.66 0.00 0.00 3.13
121 122 3.991773 TGGACACAAAGACACGCTATAAC 59.008 43.478 0.00 0.00 0.00 1.89
124 125 3.671928 ACACAAAGACACGCTATAACGAC 59.328 43.478 1.91 0.00 36.70 4.34
149 150 1.512734 CGATGCGCTTCAAACAGGC 60.513 57.895 21.52 0.00 0.00 4.85
154 155 0.318955 GCGCTTCAAACAGGCAACAT 60.319 50.000 0.00 0.00 41.41 2.71
155 156 1.869342 GCGCTTCAAACAGGCAACATT 60.869 47.619 0.00 0.00 41.41 2.71
156 157 2.606795 GCGCTTCAAACAGGCAACATTA 60.607 45.455 0.00 0.00 41.41 1.90
157 158 3.637432 CGCTTCAAACAGGCAACATTAA 58.363 40.909 0.00 0.00 41.41 1.40
158 159 3.425193 CGCTTCAAACAGGCAACATTAAC 59.575 43.478 0.00 0.00 41.41 2.01
159 160 4.367450 GCTTCAAACAGGCAACATTAACA 58.633 39.130 0.00 0.00 41.41 2.41
160 161 4.209080 GCTTCAAACAGGCAACATTAACAC 59.791 41.667 0.00 0.00 41.41 3.32
161 162 4.991153 TCAAACAGGCAACATTAACACA 57.009 36.364 0.00 0.00 41.41 3.72
162 163 4.677584 TCAAACAGGCAACATTAACACAC 58.322 39.130 0.00 0.00 41.41 3.82
167 209 4.081972 ACAGGCAACATTAACACACACAAA 60.082 37.500 0.00 0.00 41.41 2.83
394 577 2.359602 CTGCTCCCTGGTGTGCTG 60.360 66.667 9.51 6.36 0.00 4.41
410 593 3.181515 TGTGCTGATATTGCGGTTTAACG 60.182 43.478 0.00 0.00 0.00 3.18
434 617 0.178068 GGGTCCTGCTTTAGCGATCA 59.822 55.000 0.00 0.00 45.83 2.92
435 618 1.291132 GGTCCTGCTTTAGCGATCAC 58.709 55.000 0.00 0.00 45.83 3.06
457 640 0.460109 TCTGATGTGGATGAACGCGG 60.460 55.000 12.47 0.00 0.00 6.46
486 669 4.420168 GTTCCTTTCAGATCGAGACAGAG 58.580 47.826 6.10 0.00 0.00 3.35
487 670 3.956744 TCCTTTCAGATCGAGACAGAGA 58.043 45.455 6.10 1.11 0.00 3.10
501 685 0.737367 CAGAGAGCCATGCGAACGAA 60.737 55.000 0.00 0.00 0.00 3.85
511 695 4.116961 CCATGCGAACGAAGGTTATCTAA 58.883 43.478 0.00 0.00 36.24 2.10
562 750 6.264518 CCCAAAAAGAAGGCTGAAAACTACTA 59.735 38.462 0.00 0.00 0.00 1.82
563 751 7.139392 CCAAAAAGAAGGCTGAAAACTACTAC 58.861 38.462 0.00 0.00 0.00 2.73
620 815 6.098679 CCGTGATGGCTTTTCAAAAATCATA 58.901 36.000 0.20 0.00 0.00 2.15
621 816 6.757947 CCGTGATGGCTTTTCAAAAATCATAT 59.242 34.615 0.20 0.00 0.00 1.78
622 817 7.278424 CCGTGATGGCTTTTCAAAAATCATATT 59.722 33.333 0.20 0.00 0.00 1.28
623 818 8.658609 CGTGATGGCTTTTCAAAAATCATATTT 58.341 29.630 0.20 0.00 0.00 1.40
670 865 6.105333 CACCAGTTGAAACAAAATCCTCAAA 58.895 36.000 0.00 0.00 30.03 2.69
800 1003 1.296715 GTTCAGGCCTCACATCCGT 59.703 57.895 0.00 0.00 0.00 4.69
807 1010 0.321653 GCCTCACATCCGTTCCAACT 60.322 55.000 0.00 0.00 0.00 3.16
820 1023 1.136147 CCAACTACGACGACCCGAG 59.864 63.158 0.00 0.00 0.00 4.63
843 1046 1.638996 CGCAGCGAAAACGAATCAAAG 59.361 47.619 9.98 0.00 0.00 2.77
845 1048 2.604614 GCAGCGAAAACGAATCAAAGGT 60.605 45.455 0.00 0.00 0.00 3.50
847 1050 2.031157 AGCGAAAACGAATCAAAGGTGG 60.031 45.455 0.00 0.00 0.00 4.61
852 1055 0.179004 ACGAATCAAAGGTGGGCACA 60.179 50.000 0.00 0.00 0.00 4.57
895 1122 0.253044 GTGTGGAGCCAGCATCCTAA 59.747 55.000 8.81 0.00 37.74 2.69
964 1198 3.053095 AGAATCATCCAAGGTGCTCCATT 60.053 43.478 7.70 0.00 35.89 3.16
970 1219 1.134907 CCAAGGTGCTCCATTGCATTC 60.135 52.381 7.70 0.00 45.23 2.67
1024 1273 4.097741 CCCATTTCGTTCCTGCAATCATAA 59.902 41.667 0.00 0.00 0.00 1.90
1037 1286 4.449405 TGCAATCATAACAAGTTCGTTCGA 59.551 37.500 0.00 0.00 0.00 3.71
1049 1298 2.592287 GTTCGACCGGCCCACAAA 60.592 61.111 0.00 0.00 0.00 2.83
1056 1305 1.291906 CCGGCCCACAAATTGGTTC 59.708 57.895 0.00 0.00 45.25 3.62
1095 1344 2.158959 GCCATGTCTTCGACGACGG 61.159 63.158 16.23 13.12 40.21 4.79
1372 1628 2.034687 CTCACCCACCCCTGCTTG 59.965 66.667 0.00 0.00 0.00 4.01
1424 1680 7.867403 ACTACGTTTCTTAATTCCGTTCTTGTA 59.133 33.333 0.00 0.00 33.32 2.41
1426 1682 6.703165 ACGTTTCTTAATTCCGTTCTTGTACT 59.297 34.615 0.00 0.00 0.00 2.73
1431 1687 7.088905 TCTTAATTCCGTTCTTGTACTGAGAC 58.911 38.462 0.00 0.00 0.00 3.36
1440 1697 6.237675 CGTTCTTGTACTGAGACATTATGCAG 60.238 42.308 0.00 0.00 34.65 4.41
1472 1729 6.831353 TGGTTGAACTTTTCTTCATTAGTCCA 59.169 34.615 0.00 0.00 30.19 4.02
1573 1837 8.777865 ACTCCATTGGAACATATATTATCACG 57.222 34.615 6.88 0.00 39.30 4.35
1614 1878 7.426929 ACTGAGAATTCAAGTACACACATTC 57.573 36.000 8.44 0.00 31.69 2.67
1621 1885 6.519353 TTCAAGTACACACATTCAAGTACG 57.481 37.500 0.00 0.00 41.16 3.67
1622 1886 5.593968 TCAAGTACACACATTCAAGTACGT 58.406 37.500 0.00 0.00 41.16 3.57
1623 1887 5.460748 TCAAGTACACACATTCAAGTACGTG 59.539 40.000 0.00 1.96 43.46 4.49
1624 1888 3.739300 AGTACACACATTCAAGTACGTGC 59.261 43.478 3.67 0.00 41.16 5.34
1625 1889 1.525197 ACACACATTCAAGTACGTGCG 59.475 47.619 3.67 0.00 32.53 5.34
1639 1903 9.085250 TCAAGTACGTGCGTATCAAATTTAATA 57.915 29.630 7.72 0.00 32.82 0.98
1727 1991 7.201679 CCAAATAAAACATGACCAAAGCACAAA 60.202 33.333 0.00 0.00 0.00 2.83
1783 2048 6.655003 TCAACAATATCTTCTTGGAGTGGTTC 59.345 38.462 0.00 0.00 0.00 3.62
1791 2056 5.780282 TCTTCTTGGAGTGGTTCAGATCTTA 59.220 40.000 0.00 0.00 0.00 2.10
1793 2058 5.982356 TCTTGGAGTGGTTCAGATCTTATG 58.018 41.667 0.00 0.00 0.00 1.90
1815 2080 0.530744 TTCTCGATCCTTCGGTGTGG 59.469 55.000 0.00 0.00 45.53 4.17
1816 2081 0.611062 TCTCGATCCTTCGGTGTGGT 60.611 55.000 0.00 0.00 45.53 4.16
1857 2122 5.241403 TGTTCCAACTCTACCATGACATT 57.759 39.130 0.00 0.00 0.00 2.71
1861 2126 7.888021 TGTTCCAACTCTACCATGACATTATTT 59.112 33.333 0.00 0.00 0.00 1.40
1886 2151 2.495809 AACCGCAAGTTTTTCGGGT 58.504 47.368 11.29 3.44 46.78 5.28
1921 2186 4.157105 TCCTTGATGATCATGTTGTGCAAG 59.843 41.667 14.30 17.22 33.26 4.01
1926 2191 7.576861 TGATGATCATGTTGTGCAAGATAAT 57.423 32.000 14.30 0.00 35.87 1.28
1991 2256 1.380246 GCAGGGGCATGGACAATCA 60.380 57.895 0.00 0.00 40.72 2.57
2005 2270 4.704540 TGGACAATCACAAAGTGAAGTGTT 59.295 37.500 16.14 1.15 45.96 3.32
2046 2311 0.387929 GCGTAATCCTCATCCGTCCA 59.612 55.000 0.00 0.00 0.00 4.02
2048 2313 1.599667 CGTAATCCTCATCCGTCCACG 60.600 57.143 0.00 0.00 39.44 4.94
2091 2356 0.179100 TGCTGCTGCTCCTTATCGTC 60.179 55.000 17.00 0.00 40.48 4.20
2093 2358 0.596083 CTGCTGCTCCTTATCGTCCG 60.596 60.000 0.00 0.00 0.00 4.79
2109 2374 1.299468 CCGAGTAGAGCATCACCGC 60.299 63.158 0.00 0.00 37.82 5.68
2128 2393 3.567473 GTCTTGAACGGCAGAGCC 58.433 61.111 0.00 0.00 46.75 4.70
2202 2468 1.422024 TCCTCAGATCCTCCTACCGAG 59.578 57.143 0.00 0.00 38.46 4.63
2222 2495 1.154197 GGAGAACCACTTGTTACGGC 58.846 55.000 0.00 0.00 37.29 5.68
2225 2498 0.237498 GAACCACTTGTTACGGCTGC 59.763 55.000 0.00 0.00 37.29 5.25
2242 2515 0.254462 TGCCGAACTTGCCCATCATA 59.746 50.000 0.00 0.00 0.00 2.15
2266 2539 2.469274 TGAGCAGAAGAAAGCAGAGG 57.531 50.000 0.00 0.00 0.00 3.69
2269 2542 1.202855 AGCAGAAGAAAGCAGAGGCAA 60.203 47.619 0.00 0.00 44.61 4.52
2273 2546 1.239968 AAGAAAGCAGAGGCAAGGCG 61.240 55.000 0.00 0.00 44.61 5.52
2335 2608 3.675467 CGGCCAGACTGCTTAAATAAC 57.325 47.619 2.24 0.00 0.00 1.89
2339 2612 2.943033 CCAGACTGCTTAAATAACCGGG 59.057 50.000 6.32 0.00 0.00 5.73
2341 2614 2.574824 AGACTGCTTAAATAACCGGGGT 59.425 45.455 6.32 0.00 0.00 4.95
2350 2623 2.594365 ATAACCGGGGTAGGCGGACT 62.594 60.000 6.32 0.00 33.69 3.85
2388 2665 1.254954 ACGGTCGAAGTAGGCTTCTT 58.745 50.000 6.04 6.04 46.65 2.52
2393 2670 1.201647 TCGAAGTAGGCTTCTTGGACG 59.798 52.381 11.35 8.81 46.65 4.79
2394 2671 1.360820 GAAGTAGGCTTCTTGGACGC 58.639 55.000 11.35 0.00 45.68 5.19
2395 2672 0.036294 AAGTAGGCTTCTTGGACGCC 60.036 55.000 5.52 6.91 45.63 5.68
2399 2676 3.127533 GCTTCTTGGACGCCGCAT 61.128 61.111 0.00 0.00 0.00 4.73
2400 2677 3.093278 CTTCTTGGACGCCGCATC 58.907 61.111 0.00 0.00 0.00 3.91
2401 2678 2.435938 TTCTTGGACGCCGCATCC 60.436 61.111 0.00 0.00 36.70 3.51
2402 2679 4.812476 TCTTGGACGCCGCATCCG 62.812 66.667 0.21 0.00 39.30 4.18
2407 2684 4.596180 GACGCCGCATCCGCATTG 62.596 66.667 0.00 0.00 38.40 2.82
2409 2686 3.875039 CGCCGCATCCGCATTGAA 61.875 61.111 0.00 0.00 38.40 2.69
2410 2687 2.025156 GCCGCATCCGCATTGAAG 59.975 61.111 0.00 0.00 38.40 3.02
2411 2688 2.764314 GCCGCATCCGCATTGAAGT 61.764 57.895 0.00 0.00 38.40 3.01
2412 2689 1.063006 CCGCATCCGCATTGAAGTG 59.937 57.895 0.00 0.00 38.40 3.16
2413 2690 1.063006 CGCATCCGCATTGAAGTGG 59.937 57.895 0.00 0.00 40.55 4.00
2414 2691 1.226773 GCATCCGCATTGAAGTGGC 60.227 57.895 0.00 0.00 39.04 5.01
2415 2692 1.936436 GCATCCGCATTGAAGTGGCA 61.936 55.000 0.00 0.00 39.04 4.92
2416 2693 0.179156 CATCCGCATTGAAGTGGCAC 60.179 55.000 10.29 10.29 39.04 5.01
2417 2694 1.315257 ATCCGCATTGAAGTGGCACC 61.315 55.000 15.27 0.00 39.04 5.01
2418 2695 2.176546 CGCATTGAAGTGGCACCG 59.823 61.111 15.27 4.82 0.00 4.94
2419 2696 2.568090 GCATTGAAGTGGCACCGG 59.432 61.111 15.27 0.00 0.00 5.28
2420 2697 2.268076 GCATTGAAGTGGCACCGGT 61.268 57.895 15.27 0.00 0.00 5.28
2421 2698 1.875963 CATTGAAGTGGCACCGGTC 59.124 57.895 15.27 10.17 0.00 4.79
2422 2699 0.888736 CATTGAAGTGGCACCGGTCA 60.889 55.000 15.27 12.77 0.00 4.02
2446 2723 2.709125 TTTGGTCACGTCGGCCTGAG 62.709 60.000 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.284746 AGAAACTAGTGTTTGAGGAGGAGG 59.715 45.833 0.00 0.00 45.36 4.30
1 2 5.476091 AGAAACTAGTGTTTGAGGAGGAG 57.524 43.478 0.00 0.00 45.36 3.69
2 3 5.611374 CAAGAAACTAGTGTTTGAGGAGGA 58.389 41.667 0.00 0.00 45.36 3.71
3 4 4.214332 GCAAGAAACTAGTGTTTGAGGAGG 59.786 45.833 14.84 0.00 45.36 4.30
4 5 4.214332 GGCAAGAAACTAGTGTTTGAGGAG 59.786 45.833 14.84 0.00 45.36 3.69
5 6 4.134563 GGCAAGAAACTAGTGTTTGAGGA 58.865 43.478 14.84 0.00 45.36 3.71
6 7 3.253432 GGGCAAGAAACTAGTGTTTGAGG 59.747 47.826 14.84 0.00 45.36 3.86
7 8 3.253432 GGGGCAAGAAACTAGTGTTTGAG 59.747 47.826 14.84 0.00 45.36 3.02
8 9 3.117663 AGGGGCAAGAAACTAGTGTTTGA 60.118 43.478 14.84 0.00 45.36 2.69
9 10 3.222603 AGGGGCAAGAAACTAGTGTTTG 58.777 45.455 0.00 3.10 45.36 2.93
11 12 3.222603 CAAGGGGCAAGAAACTAGTGTT 58.777 45.455 0.00 0.00 38.16 3.32
12 13 2.174854 ACAAGGGGCAAGAAACTAGTGT 59.825 45.455 0.00 0.00 0.00 3.55
13 14 2.863809 ACAAGGGGCAAGAAACTAGTG 58.136 47.619 0.00 0.00 0.00 2.74
14 15 3.009143 CCTACAAGGGGCAAGAAACTAGT 59.991 47.826 0.00 0.00 0.00 2.57
15 16 3.009143 ACCTACAAGGGGCAAGAAACTAG 59.991 47.826 0.00 0.00 40.58 2.57
16 17 2.983898 ACCTACAAGGGGCAAGAAACTA 59.016 45.455 0.00 0.00 40.58 2.24
17 18 1.780919 ACCTACAAGGGGCAAGAAACT 59.219 47.619 0.00 0.00 40.58 2.66
18 19 2.287977 ACCTACAAGGGGCAAGAAAC 57.712 50.000 0.00 0.00 40.58 2.78
19 20 2.445525 AGAACCTACAAGGGGCAAGAAA 59.554 45.455 0.00 0.00 40.58 2.52
20 21 2.062636 AGAACCTACAAGGGGCAAGAA 58.937 47.619 0.00 0.00 40.58 2.52
21 22 1.351017 CAGAACCTACAAGGGGCAAGA 59.649 52.381 0.00 0.00 40.58 3.02
22 23 1.073923 ACAGAACCTACAAGGGGCAAG 59.926 52.381 0.00 0.00 40.58 4.01
23 24 1.145571 ACAGAACCTACAAGGGGCAA 58.854 50.000 0.00 0.00 40.58 4.52
24 25 1.145571 AACAGAACCTACAAGGGGCA 58.854 50.000 0.00 0.00 40.58 5.36
25 26 1.886542 CAAACAGAACCTACAAGGGGC 59.113 52.381 0.00 0.00 40.58 5.80
26 27 2.158519 ACCAAACAGAACCTACAAGGGG 60.159 50.000 0.00 0.00 40.58 4.79
27 28 3.146847 GACCAAACAGAACCTACAAGGG 58.853 50.000 0.00 0.00 40.58 3.95
28 29 3.564225 GTGACCAAACAGAACCTACAAGG 59.436 47.826 0.00 0.00 42.49 3.61
29 30 3.564225 GGTGACCAAACAGAACCTACAAG 59.436 47.826 0.00 0.00 0.00 3.16
30 31 3.201266 AGGTGACCAAACAGAACCTACAA 59.799 43.478 3.63 0.00 39.48 2.41
31 32 2.775384 AGGTGACCAAACAGAACCTACA 59.225 45.455 3.63 0.00 39.48 2.74
32 33 3.487120 AGGTGACCAAACAGAACCTAC 57.513 47.619 3.63 0.00 39.48 3.18
33 34 4.039973 CACTAGGTGACCAAACAGAACCTA 59.960 45.833 3.63 0.00 41.46 3.08
34 35 3.046374 ACTAGGTGACCAAACAGAACCT 58.954 45.455 3.63 0.00 43.58 3.50
35 36 3.139077 CACTAGGTGACCAAACAGAACC 58.861 50.000 3.63 0.00 35.23 3.62
36 37 2.548480 GCACTAGGTGACCAAACAGAAC 59.452 50.000 3.63 0.00 35.23 3.01
37 38 2.171659 TGCACTAGGTGACCAAACAGAA 59.828 45.455 3.63 0.00 35.23 3.02
38 39 1.765904 TGCACTAGGTGACCAAACAGA 59.234 47.619 3.63 0.00 35.23 3.41
39 40 2.254546 TGCACTAGGTGACCAAACAG 57.745 50.000 3.63 0.00 35.23 3.16
40 41 2.719531 TTGCACTAGGTGACCAAACA 57.280 45.000 3.63 0.00 35.23 2.83
41 42 4.584327 AAATTGCACTAGGTGACCAAAC 57.416 40.909 3.63 0.00 35.23 2.93
42 43 4.646945 TCAAAATTGCACTAGGTGACCAAA 59.353 37.500 3.63 0.00 35.23 3.28
43 44 4.211125 TCAAAATTGCACTAGGTGACCAA 58.789 39.130 3.63 0.00 35.23 3.67
44 45 3.820467 CTCAAAATTGCACTAGGTGACCA 59.180 43.478 3.63 0.00 35.23 4.02
45 46 3.366374 GCTCAAAATTGCACTAGGTGACC 60.366 47.826 0.00 0.00 35.23 4.02
46 47 3.667960 CGCTCAAAATTGCACTAGGTGAC 60.668 47.826 1.57 0.00 35.23 3.67
47 48 2.483877 CGCTCAAAATTGCACTAGGTGA 59.516 45.455 1.57 0.00 35.23 4.02
48 49 2.414559 CCGCTCAAAATTGCACTAGGTG 60.415 50.000 0.00 0.00 36.51 4.00
49 50 1.812571 CCGCTCAAAATTGCACTAGGT 59.187 47.619 0.00 0.00 0.00 3.08
50 51 1.133025 CCCGCTCAAAATTGCACTAGG 59.867 52.381 0.00 0.00 0.00 3.02
51 52 1.468054 GCCCGCTCAAAATTGCACTAG 60.468 52.381 0.00 0.00 0.00 2.57
52 53 0.525761 GCCCGCTCAAAATTGCACTA 59.474 50.000 0.00 0.00 0.00 2.74
53 54 1.290009 GCCCGCTCAAAATTGCACT 59.710 52.632 0.00 0.00 0.00 4.40
54 55 2.088178 CGCCCGCTCAAAATTGCAC 61.088 57.895 0.00 0.00 0.00 4.57
55 56 2.257980 CGCCCGCTCAAAATTGCA 59.742 55.556 0.00 0.00 0.00 4.08
56 57 1.801512 GACGCCCGCTCAAAATTGC 60.802 57.895 0.00 0.00 0.00 3.56
57 58 1.154035 GGACGCCCGCTCAAAATTG 60.154 57.895 0.00 0.00 0.00 2.32
58 59 0.893727 AAGGACGCCCGCTCAAAATT 60.894 50.000 0.00 0.00 37.58 1.82
59 60 0.893727 AAAGGACGCCCGCTCAAAAT 60.894 50.000 0.00 0.00 37.58 1.82
60 61 1.512156 GAAAGGACGCCCGCTCAAAA 61.512 55.000 0.00 0.00 37.58 2.44
61 62 1.964373 GAAAGGACGCCCGCTCAAA 60.964 57.895 0.00 0.00 37.58 2.69
62 63 2.358247 GAAAGGACGCCCGCTCAA 60.358 61.111 0.00 0.00 37.58 3.02
63 64 4.388499 GGAAAGGACGCCCGCTCA 62.388 66.667 0.00 0.00 37.58 4.26
64 65 3.607370 AAGGAAAGGACGCCCGCTC 62.607 63.158 0.00 0.00 37.58 5.03
65 66 2.692273 AAAAGGAAAGGACGCCCGCT 62.692 55.000 0.00 0.00 37.58 5.52
66 67 1.802337 AAAAAGGAAAGGACGCCCGC 61.802 55.000 0.00 0.00 37.58 6.13
67 68 0.240145 GAAAAAGGAAAGGACGCCCG 59.760 55.000 0.00 0.00 37.58 6.13
68 69 1.617322 AGAAAAAGGAAAGGACGCCC 58.383 50.000 0.00 0.00 0.00 6.13
69 70 3.188667 CACTAGAAAAAGGAAAGGACGCC 59.811 47.826 0.00 0.00 0.00 5.68
70 71 3.813724 ACACTAGAAAAAGGAAAGGACGC 59.186 43.478 0.00 0.00 0.00 5.19
71 72 4.213482 CCACACTAGAAAAAGGAAAGGACG 59.787 45.833 0.00 0.00 0.00 4.79
72 73 4.023107 GCCACACTAGAAAAAGGAAAGGAC 60.023 45.833 0.00 0.00 0.00 3.85
73 74 4.142038 GCCACACTAGAAAAAGGAAAGGA 58.858 43.478 0.00 0.00 0.00 3.36
74 75 3.888930 TGCCACACTAGAAAAAGGAAAGG 59.111 43.478 0.00 0.00 0.00 3.11
75 76 4.557496 GCTGCCACACTAGAAAAAGGAAAG 60.557 45.833 0.00 0.00 0.00 2.62
76 77 3.317993 GCTGCCACACTAGAAAAAGGAAA 59.682 43.478 0.00 0.00 0.00 3.13
77 78 2.884639 GCTGCCACACTAGAAAAAGGAA 59.115 45.455 0.00 0.00 0.00 3.36
78 79 2.106511 AGCTGCCACACTAGAAAAAGGA 59.893 45.455 0.00 0.00 0.00 3.36
79 80 2.227388 CAGCTGCCACACTAGAAAAAGG 59.773 50.000 0.00 0.00 0.00 3.11
80 81 2.227388 CCAGCTGCCACACTAGAAAAAG 59.773 50.000 8.66 0.00 0.00 2.27
141 142 4.267452 GTGTGTGTTAATGTTGCCTGTTTG 59.733 41.667 0.00 0.00 0.00 2.93
167 209 4.894784 TGAATGGCGTACTTCTCTCTTTT 58.105 39.130 0.00 0.00 0.00 2.27
171 213 7.439655 AGAATATTTGAATGGCGTACTTCTCTC 59.560 37.037 0.00 0.00 0.00 3.20
173 215 7.484035 AGAATATTTGAATGGCGTACTTCTC 57.516 36.000 0.00 0.00 0.00 2.87
175 217 7.171678 AGCTAGAATATTTGAATGGCGTACTTC 59.828 37.037 0.00 0.00 0.00 3.01
177 219 6.525629 AGCTAGAATATTTGAATGGCGTACT 58.474 36.000 0.00 0.00 0.00 2.73
394 577 2.033492 CGACCCGTTAAACCGCAATATC 60.033 50.000 0.00 0.00 0.00 1.63
410 593 1.221021 CTAAAGCAGGACCCGACCC 59.779 63.158 0.00 0.00 0.00 4.46
434 617 2.932622 GCGTTCATCCACATCAGAGTGT 60.933 50.000 0.00 0.00 37.82 3.55
435 618 1.662629 GCGTTCATCCACATCAGAGTG 59.337 52.381 0.00 0.00 39.21 3.51
447 630 3.918220 CGAGCTGCCGCGTTCATC 61.918 66.667 4.92 0.00 42.32 2.92
457 640 1.663135 GATCTGAAAGGAACGAGCTGC 59.337 52.381 0.00 0.00 0.00 5.25
486 669 1.298859 AACCTTCGTTCGCATGGCTC 61.299 55.000 0.00 0.00 0.00 4.70
487 670 0.036765 TAACCTTCGTTCGCATGGCT 60.037 50.000 0.00 0.00 33.17 4.75
627 822 5.626142 TGGTGTCAGCCTTTTATTGTAGAA 58.374 37.500 0.00 0.00 0.00 2.10
632 827 4.278170 TCAACTGGTGTCAGCCTTTTATTG 59.722 41.667 0.00 0.00 44.59 1.90
640 835 1.388547 TGTTTCAACTGGTGTCAGCC 58.611 50.000 0.00 0.00 44.59 4.85
641 836 3.502191 TTTGTTTCAACTGGTGTCAGC 57.498 42.857 0.00 0.00 44.59 4.26
642 837 5.043248 GGATTTTGTTTCAACTGGTGTCAG 58.957 41.667 0.00 0.00 46.10 3.51
644 839 5.163561 TGAGGATTTTGTTTCAACTGGTGTC 60.164 40.000 0.00 0.00 0.00 3.67
645 840 4.709397 TGAGGATTTTGTTTCAACTGGTGT 59.291 37.500 0.00 0.00 0.00 4.16
794 997 1.135603 TCGTCGTAGTTGGAACGGATG 60.136 52.381 0.00 0.00 40.68 3.51
800 1003 0.888736 TCGGGTCGTCGTAGTTGGAA 60.889 55.000 0.00 0.00 0.00 3.53
820 1023 3.322706 ATTCGTTTTCGCTGCGGGC 62.323 57.895 23.03 8.84 43.73 6.13
852 1055 1.610554 AAGTATACCGTGGGCGTGCT 61.611 55.000 0.00 0.00 36.15 4.40
895 1122 3.637273 GACGGGAAGGTGGCCAGT 61.637 66.667 5.11 0.00 36.52 4.00
944 1177 3.028850 CAATGGAGCACCTTGGATGATT 58.971 45.455 0.71 0.00 37.04 2.57
945 1178 2.662866 CAATGGAGCACCTTGGATGAT 58.337 47.619 0.71 0.00 37.04 2.45
946 1179 1.956636 GCAATGGAGCACCTTGGATGA 60.957 52.381 0.71 0.00 37.04 2.92
1024 1273 1.952635 GCCGGTCGAACGAACTTGT 60.953 57.895 27.26 0.00 35.47 3.16
1049 1298 2.731572 CAGGGCTTGATCTGAACCAAT 58.268 47.619 0.00 0.00 33.11 3.16
1056 1305 3.207669 GGCGCAGGGCTTGATCTG 61.208 66.667 10.83 0.00 42.94 2.90
1222 1474 3.056313 GCCGCCTTCTTGCCATGAC 62.056 63.158 0.00 0.00 0.00 3.06
1411 1667 4.866508 TGTCTCAGTACAAGAACGGAAT 57.133 40.909 0.00 0.00 0.00 3.01
1415 1671 5.576774 TGCATAATGTCTCAGTACAAGAACG 59.423 40.000 0.00 0.00 32.02 3.95
1416 1672 6.813649 TCTGCATAATGTCTCAGTACAAGAAC 59.186 38.462 0.00 0.00 32.02 3.01
1424 1680 5.873712 CAGAGTTTCTGCATAATGTCTCAGT 59.126 40.000 11.57 0.00 37.72 3.41
1426 1682 5.181009 CCAGAGTTTCTGCATAATGTCTCA 58.819 41.667 0.54 0.00 42.98 3.27
1431 1687 5.885230 TCAACCAGAGTTTCTGCATAATG 57.115 39.130 0.54 0.00 42.98 1.90
1440 1697 6.852664 TGAAGAAAAGTTCAACCAGAGTTTC 58.147 36.000 0.00 0.00 33.41 2.78
1518 1782 7.261829 TGAATTGGCAAAATTCTCCTTTTTG 57.738 32.000 19.15 4.88 43.60 2.44
1585 1849 7.335673 TGTGTGTACTTGAATTCTCAGTTTTGA 59.664 33.333 13.91 0.00 31.69 2.69
1586 1850 7.471721 TGTGTGTACTTGAATTCTCAGTTTTG 58.528 34.615 13.91 0.00 31.69 2.44
1592 1856 7.498900 ACTTGAATGTGTGTACTTGAATTCTCA 59.501 33.333 7.05 0.00 0.00 3.27
1614 1878 9.858247 ATATTAAATTTGATACGCACGTACTTG 57.142 29.630 4.84 0.00 33.01 3.16
1645 1909 8.610896 TGTTTGAAATTTGAATGGCTAAGTTTG 58.389 29.630 0.00 0.00 0.00 2.93
1649 1913 7.712264 TGTGTTTGAAATTTGAATGGCTAAG 57.288 32.000 0.00 0.00 0.00 2.18
1716 1980 7.599621 TCATATCACTTGATTTTTGTGCTTTGG 59.400 33.333 0.00 0.00 36.05 3.28
1727 1991 8.450964 CGTTGGTTACTTCATATCACTTGATTT 58.549 33.333 0.00 0.00 36.05 2.17
1751 2015 4.207891 AGAAGATATTGTTGAGCACCGT 57.792 40.909 0.00 0.00 0.00 4.83
1752 2016 4.201851 CCAAGAAGATATTGTTGAGCACCG 60.202 45.833 11.22 0.00 0.00 4.94
1783 2048 4.526262 AGGATCGAGAACCCATAAGATCTG 59.474 45.833 0.00 0.00 35.94 2.90
1815 2080 6.348540 GGAACATCACTCCAACAGAATACAAC 60.349 42.308 0.00 0.00 32.77 3.32
1816 2081 5.705441 GGAACATCACTCCAACAGAATACAA 59.295 40.000 0.00 0.00 32.77 2.41
1857 2122 6.887626 AAAACTTGCGGTTCCTCTAAAATA 57.112 33.333 0.00 0.00 37.12 1.40
1861 2126 3.249080 CGAAAAACTTGCGGTTCCTCTAA 59.751 43.478 0.00 0.00 37.12 2.10
1948 2213 1.977293 ATTGGAAGCCTCGGAGCCTC 61.977 60.000 0.00 0.00 0.00 4.70
2028 2293 1.599667 CGTGGACGGATGAGGATTACG 60.600 57.143 0.00 0.00 35.37 3.18
2032 2297 2.815308 GCGTGGACGGATGAGGAT 59.185 61.111 0.71 0.00 40.23 3.24
2074 2339 0.596083 CGGACGATAAGGAGCAGCAG 60.596 60.000 0.00 0.00 0.00 4.24
2077 2342 1.025812 ACTCGGACGATAAGGAGCAG 58.974 55.000 0.00 0.00 0.00 4.24
2091 2356 1.299468 GCGGTGATGCTCTACTCGG 60.299 63.158 0.00 0.00 0.00 4.63
2093 2358 1.299468 CGGCGGTGATGCTCTACTC 60.299 63.158 0.00 0.00 34.52 2.59
2178 2444 2.514803 GTAGGAGGATCTGAGGAGAGC 58.485 57.143 0.00 0.00 33.54 4.09
2202 2468 1.804601 CCGTAACAAGTGGTTCTCCC 58.195 55.000 0.00 0.00 40.96 4.30
2208 2474 1.599797 GGCAGCCGTAACAAGTGGT 60.600 57.895 0.00 0.00 0.00 4.16
2222 2495 1.033746 ATGATGGGCAAGTTCGGCAG 61.034 55.000 0.00 0.00 0.00 4.85
2225 2498 0.947244 GCTATGATGGGCAAGTTCGG 59.053 55.000 0.00 0.00 0.00 4.30
2242 2515 1.338484 TGCTTTCTTCTGCTCATCGCT 60.338 47.619 0.00 0.00 40.11 4.93
2255 2528 1.673665 CGCCTTGCCTCTGCTTTCT 60.674 57.895 0.00 0.00 38.71 2.52
2273 2546 4.389576 CTTGCACAACGCCGCCTC 62.390 66.667 0.00 0.00 41.33 4.70
2281 2554 0.398318 ACCTCCTCTCCTTGCACAAC 59.602 55.000 0.00 0.00 0.00 3.32
2321 2594 2.995283 ACCCCGGTTATTTAAGCAGTC 58.005 47.619 0.00 0.00 33.54 3.51
2325 2598 2.224606 GCCTACCCCGGTTATTTAAGC 58.775 52.381 0.00 0.00 0.00 3.09
2396 2673 1.226773 GCCACTTCAATGCGGATGC 60.227 57.895 0.00 0.00 43.20 3.91
2397 2674 0.179156 GTGCCACTTCAATGCGGATG 60.179 55.000 0.00 0.00 0.00 3.51
2398 2675 1.315257 GGTGCCACTTCAATGCGGAT 61.315 55.000 0.00 0.00 0.00 4.18
2399 2676 1.971167 GGTGCCACTTCAATGCGGA 60.971 57.895 0.00 0.00 0.00 5.54
2400 2677 2.568090 GGTGCCACTTCAATGCGG 59.432 61.111 0.00 0.00 0.00 5.69
2401 2678 2.176546 CGGTGCCACTTCAATGCG 59.823 61.111 0.00 0.00 0.00 4.73
2402 2679 2.200170 GACCGGTGCCACTTCAATGC 62.200 60.000 14.63 0.00 0.00 3.56
2403 2680 0.888736 TGACCGGTGCCACTTCAATG 60.889 55.000 14.63 0.00 0.00 2.82
2404 2681 0.606401 CTGACCGGTGCCACTTCAAT 60.606 55.000 14.63 0.00 0.00 2.57
2405 2682 1.227823 CTGACCGGTGCCACTTCAA 60.228 57.895 14.63 0.00 0.00 2.69
2406 2683 2.425592 CTGACCGGTGCCACTTCA 59.574 61.111 14.63 0.00 0.00 3.02
2407 2684 3.050275 GCTGACCGGTGCCACTTC 61.050 66.667 14.63 0.00 0.00 3.01
2418 2695 2.604174 CGTGACCAAACGGCTGACC 61.604 63.158 0.00 0.00 39.89 4.02
2419 2696 2.935955 CGTGACCAAACGGCTGAC 59.064 61.111 0.00 0.00 39.89 3.51
2446 2723 0.748005 ACCTACCACATTCATGCCGC 60.748 55.000 0.00 0.00 0.00 6.53
2448 2725 2.017049 GTCACCTACCACATTCATGCC 58.983 52.381 0.00 0.00 0.00 4.40
2475 2752 0.900182 TGTCGCTCCAGAGTGGACAT 60.900 55.000 15.24 0.00 42.67 3.06
2476 2753 0.900182 ATGTCGCTCCAGAGTGGACA 60.900 55.000 19.07 19.07 42.67 4.02
2477 2754 0.459237 CATGTCGCTCCAGAGTGGAC 60.459 60.000 8.29 10.24 42.67 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.