>input_sequence_77571
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------------------------------------------------ACCCATTTCGTTCCTGCAATCATAACAAGTTC
GTTCGACCGGCCCACAAATTGGTTCAGATCAAGCCCTGCGCCATCGCCATGTCTTCGACGACGGCGGCGGCA---TCCGA
CGTCGCCGGCGTCTGGTTCTTCGGCAAGCTCTCCGCCGCCATCCGTGGGAAGAAGCGGCAGGCCGTGCCGACGGTGAGCC
ACGCCGAGCACCAACACCAGATGGGAGGGGCCGGTCATGGCAAGAAGGCGGCCGCGGCGGCGAAGCCTTCCGTCGTCGAC
CGGAAGGAGGCCGGCGGCGGTGGGATGTCGGACGCGACGGTGTACCTGCTGCTCGACCGCTTCGCACCCAGCTA----GT
GCTCGCTCGTCTCACCCACCCCTGCTTGCTCGTGTACCTCGACTGTATATGTAACTACGTTTCTTAATTCCGTTCTTGTA
CTGAGACA-TTATGCAGAAACTCTGGTTGAACTTTTCTTCATTAGTCCATCCCTTAAAACTTAATTCTCCATACTCT---
----AAAAAAACTTAATTCTCCAA--------------------------------------------------------
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>chr5D_1_TraesCS5D01G075300
CCTCCTCCTCAAACACTAGTTTCTTGCCCCTTGTAGGTTCTGTTTGGTCACCTAGTGCAATTTTGAGCGGGCGTCCTTTC
CTTTTTCTAGTGTGGCAGCTGGACACAAAGACACGCTATAACGACATACGGCGATGCGCTTCAAACAGGCAACATTAACA
CAC-----------------------------------------ACAAAAAAGAGAGAAGTACGCCATTCAAATATTCTA
G-------------------------------------------------------------------------------
----------------------------------------------------------CTATCACGTTCCCGGCGCGGCG
CGTGCTTTCTTTACCGCGTGGTGGGGACGTGGAACTATCATCTATGG----CACCGATCGTGATCACTCGTGGAGACAAC
GTGGCCGTAGGGTCCGCGTCACTGCCACGCGCGTGAACGATAGGAAGAGACGACATACCTAGCATTTGCGTTCGTTTGAC
TGCTCCCTGGTGTGCTGATATTGCGGTTTAACGGGTCGGGTCCTGCTTTAGCGATCACACTCTGATGTGGATGAACGCGG
CAGCTCGTTCCTTTCAGATCGAGACAGAGAGCCATGC-GAACGAAGGTTATCTAACAAAAATCAATAAAGCTCTTTGAAT
CC----CAAAAAGAAGGCTGAAAACTACTACTCCAAGTTAATTA---ACTTAGGTTAGTTTTGGCGCCGTGATGGCTTTT
CAAAAATCA----TATTTTTTTTCTACAATAAAAGGCTGACACCAGTTGAAACAAAATCCTCAAAGATGCGCCATCTCAG
CTGCCTCTATCTTGTCTTCGTGCCCAGACAAATAACCCGGCCGGTCCGTCG-------GTTTTGGTCAGGATCAGTGTGC
CTCCGACTGCGACCCT-GTAGGCGGTTCAGGCCTCACATCCGTTCCAACTACGACGACCCGAGCCCGCAGCGAAAACGAA
TCAAAGGTGGGCACAGCACGCCCACGGTATACTTTGCCGTGTGGAGCCAGC------------------------ATCCT
AACTGGCCACCTTCCCGTCAGCGATGCATGGCG------CCCTATATAAGCGACAGAAT-CATCCAAGGTGCTCCATTG-
--------------CATTCGCAAAGCCCCGTTCGCTGGCATCCAGATCACCCATTTCGTTCCTGCAATCATAACAAGTTC
GTTCGACCGGCCCACAAATTGGTTCAGATCAAGCCCTGCGCCATCGCCATGTCTTCGACGACGGCGGCGGCA---TCCGA
CGTCGCCGGCGTCTGGTTCTTCGGCAAGCTCTCCGCCGCCATCCGTGGGAAGAAGCGGCAGGCCGTGCCGACGGTGAGCC
ACGCCGAGCACCAACACCAGATGGGAGGGGCCGGTCATGGCAAGAAGGCGGCCGCGGCGGCGAAGCCTTCCGTCGTCGAC
CGGAAGGAGGCCGGCGGCGGTGGGATGTCGGACGCGACGGTGTACCTGCTGCTCGACCGCTTCGCACCCAGCTA----GT
GCTCGCTCGTCTCACCCACCCCTGCTTGCTCGTGTACCTCGACTGTATATGTAACTACGTTTCTTAATTCCGTTCTTGTA
CTGAGACA-TTATGCAGAAACTCTGGTTGAACTTTTCTTCATTAGTCCATCCCTTAAAACTTAATTCTCCATACTCT---
----AAAAAAACTTAATTCTCCAAAAAGGAGAATTTTGCCAATTCATCCAAACTCCATTGGAACATATATTATCACGACA
TATTAATTTCAAAACTGAGAATTCAAGTACACACATTCAAGTACGTGCGTATCAAATTTAATATTTTTCAAACTTAGCCA
TTCAAATTTCAAACACAATATAGGTCCAAATGAAATATAAGAATCCAAATAAAACATGACCAAAGCACAAAAATCAAGTG
ATATGAAGTAACCAACGGTGCTCAACAATATCTTCTTGGAGT-GGTTCAGATCTTATGGGTTCTCGATCCTTCGGTGTGG
TTGTATTCTGTTGGAGTGATGTTCCAACTCTACCATGACATTATTTTAGAGGAACCGCAAGTTTTTCGGGTCATCTCTCT
CATCCTTGATGATCATGTTGTGCAAGATAATATATGTTATCATGACCTTCTAGAGGCTCCGAGGCTTCCAATACTCAGCA
GGGGCATGGACAATCACAAAGTGAAGTGTTTTTTACCGCTCGAACTGTCGCGCGTAATCCTCATCCGTCCACGCGGCCTC
TGCGTGGAGGGGCGGCTGCTGCTGCTCCTTATCGTCCGAGTAGAGCATCACCGCCGTCTTGAACGGCAGAGCCGTGGA-C
CCCGACGGGCCTGGGGCCGTGGGTGGCGGCGCCATGATCTGGAGCTCTCCTCAGATCCTCCTACCGAGGGAGAACCACT-
------TGTTACGGCTGCCGAACTTGCCCATCATAGCGATGAGCAGAAGAAAGCAGAGGCAAGGCGAGGCGGCGTTGTGC
AAGGAGAGGAGGTAGGGTTTGCAGGCGCGGCCAGACTGCTTAAATAACCGGGGTAGGCGGACTGGCCCAC----ATGCGG
GCGCAACGGTCGAAGTAGGCTTCTTGGACGCCGCATCCGCATTGAAGTGGCACCGGTCAGCCGTTTGGTCACGTCGGCCT
GAGCGGCATGAATGTGGTAGGTGACCGCCACATGTCCACTCTGGAGCGACATGAATGTGTGGTGAGTATTCTGGAGC
>chr5A_82
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-TTTTTCTAGTGTGGCAGCTGGACACAAAGACACGCTATAATGATATACGGCGATGCGCTTTAAACAGGGAACAAGTGTG
GTGGCGCTCGCTAGCCACGTCCCTTAAATAAAGTGGCAACACTAACAAGAAAAAAAAAGGTACGCGATTCATATATTCTA
GCTATCACGTTCCCGCGAATCAACATGTGGTTGAGATGGTTAGGTGAACAGTGGTATCTCCAACCCATCAGGGTTCAAAT
CCTGATGCTCGCATTATTCCTGAATTTATTTCAACATTACCGGCAATGCTAAAAAAAACTATCACGTTTCGGGCGCGGCG
CGTGCTTTCTTTACCGCGTGGTGGGGACGTGGAACTATCATCTATGG----CACCGATCGTGATCACTCGTGG-------
-TGGCCGTAGGGTCCGCGTCACTGCCACTCGCGTGAACGATAGGAAGAGACGACATACCTAGCATTTGCGTTCGTTTGAC
TGCTCCCTGGTGTGCTCATATTGCGGTTTAACAGGTCGGGTCCTGCTTTAGCGATCTTACTCTGATGTGAATGAACGAGA
CATCTCGTTTCTTTCAGATCGAGACAGAACGCCATGC-GAACGAGGGTTATCTATCAAAAATCAATAAAGCTCTTTGAAT
CC----CAAAAAGAAGGCTGAAAAGTACTCTTCCAAGTTAATTA---ACTTAGGTTAGTTTTGGCGCCGTGATGGCTTTT
CAAAAATCA----T----TTTCTCTAAAATAAAAAATTAGCACCAGTTGAAACAAA-TCCTCAACGATGTACCGTCTCAG
CTGCCCCTATCTTGTCTTCATGCCTAGACAAATAACCCGGCCGGTCCGTCG-------GTTTTGGTCTCCATC----TGC
CTCCGACTGCGACGCGGGTAGGCGGTTCAGGCCTCAGATCCGCTCCAACAAGGACGACCCGAACCCGCAGCGCAAACGAA
TCAAACGCGCGCACGGCACGCCCACGGTATACTTTGCCGTGTGGAGCCAGCCAGTCACACCCCCAACGCC----TATCCT
ACCTGGCCACCTTCCCGTCAGCGATGCATGGCGATGGCGCCTTATATAAGCGACAGCCAGCATCCAAGGTGCTCCATCGG
CCATCGCATATTCGCATTTGCACAGCCCCGTTCGCTGGCATCCAGATCACCCATTTCGTTCCTGCAATCATA-CAAGT--
GTTCGTCCGGCCCACAAGTTGGTTGAGATCAAGCCCTGCGCCATCGCCATGTCTTCGACGACGACGGCGGCA---TCCGA
CGTCGCCGGCGTCTGGTTCTTCGGCGAGCTCTCCGCCGCCCTGCGTGGGAAGAAGCGGCAGGCCGTACCCACGGTGAGCC
ACGCCGAGCACCAGCACCAGATGGGAGGGGCCGCCCATGGCAACAAGGCGGCCGCGGCGGCGGGGCCTTCCGTGGTCGAC
CGGAAGGAGGCCGGCGGCGGCGGGATGTCGGACGCGACGGTGTACCTGCTGCTCGACCGCTTCGCACCCAGTTAGCCGGT
GTTCGCTCGTCTCACCCACCCCTGCTTCCTCGTGTACCTCGACTGTGTATGTAACTACGTTCTT----------------
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>chr5B_182
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--------------------------------------------------------------CGCGATTCAAAGAGGC-A
G-------------------------------------------------------------------------------
----------------------------------------------------------CTATCATGTTACCGGCGCGGCG
CGTGCTTTCTTTACGGCATCGTGGAAACGTGGAACCGTCATCTATCGCTCACACGGATCGTGATCACTCGTGGAGACAAC
GTGGCCGTAT-GTCCGCGTCACTGCCACGCGCGTGAATGATCGGAAGAGACG----ACATAGCATTTGCTGTTTA-----
-----------------------------------------------------------------------------CGA
CAGCTCGTTCCTTTCACATCGAGACAAAAGGGCCATGTGAACGATGGTTATCTATCAAAAATCAATAAAGCTCTTTGAAT
CACACACAAAAAAAAGGCTGAAAACTACTCTTCCAAGTTAATTATTAACTTAGGTTAGTCTTGGCGTCGTGATGGCTTTT
CAAAAATCAATTTT----TTTCTACAAAAAAAAAAAAGCTGACCAGTTGAAACAAAATCATCAACGATGCGCCATCTTAG
CTGCCTCTGTCTTGTCTTCGTGCCCAGACAAATTACCCGGCCGGTCCGTCGCCCGTCGGTTTTGGTCAGGATCAGTGTGC
CTCCGACTGCGACCCT-GCAGGCGGTTCAGACCCCAGATCCGCTCCAACAACGACGACCCGAACCCGCACCGAAAACGAG
TCAGACGCGCGCACGGCACGCCCACGGTATACTTTGCCGTGTGGAGCCAGCCAGTCACCCCCAACTGCAATGCATATCCT
ACCTGGCCACCTTCCCGTCAGCGATGCATGGCG------CCCTATATAAGCGACAGCCAGCATCCAAGGTGCTCCATCG-
--------------CATTTGCACATCCCCGTTCGCTGGCATCCAGATCGCCCATTTCGTTCCCGCAATCATA-CAAGTTC
GTTCGTCCGGCCCACAAGTTAGTTGAGATCAAGCC-TGCGCCATCGCCATGTCTTCTACGACGACGACGACCGCGTCCGA
CGTCGCCGGCGTCTGGTTCTTCGGCAAGCTCTCCGCCGCCATCCGTGGGAAGAAGAGGCAGGCCGTGCCGACGGTGAGCC
ACGCCGATCACCAACACCAGATGGGAGGGGCCGCTCATGGCAACAAGGCGGCCGCGGCGGCGAAGCCTTCCGTCGTCGAC
CGGAAGGAGGCCGGCGGCGGTGGGATGTCGGACGCGACGGTGTACCTGCTGCTCGACCGCTTCGCACCCAGCTAGCCGGT
GCTCGCTCGTCTCACCCACCCCCGC-TCCTCGTGTACCTCGACTGTATATGTAACTACGTTTCTTAGTTCAATTCTTGTT
CCGAGATATTTATGCACAAACTCTGGTTGAACTTTTCTTCATTAGTCCTTCCCTTAAAACTTAATTTTCCATACTCTCGA
AATAAAAAGGACTTAATTCTCTAAAAAGGAGAATTTTGCCAATTCATCCAAACTCCATTGGAACATATACTATCACAACA
TATTAATTCGAAAACCGAGAATTCAAGTACACACATTAAAGTACA----TATCAAATTTAATGTTTTTAAAAATTAGCCA
TTCAAATTTCAAACACAATATAGGTCCAAATGAAATATAAGAATCCAAATAAAACATGATCAAAGCACAAGAATCAAGTG
ATATGAAGTAACCAGTGGTGCTCAACAATATCTTCTTGGAGTTGGTTGAGATCTTCT-GGTTCTCGATCCTTCGGTGTGC
CTGTATTCTGTTGGAGTGATGTTCCAACTCTACCATGACATCATTGTAGAGGAACCGCAAGTTTTTCGGGCCATCTCTCT
CATCCTTGATGATCATGTTGTGCAACATAACATGTGTTGTCATGACCTTCTACAGGCTCCGAGGCTTCCAATACTCAGCA
GGGGCATGGACAATCGCAAAGTGAAGTGT-TTTTACCGCTCGAACTGTCGCGTGTACTCCTCATCCGTCCGCTCGGCCTC
TGTGTGGAGGGGCGGCTGTTGTTGCTCCTTATCGTTCAAGTAGAGCATCACCGTCGTCTTGAACGACGGAGGTGTGGACC
CCCGACGAGCCTGGGGCCATGGGCAGCGGCGCCATGATCTGGAACTCTCCTCGGATCCTCCTACCGAAGGAGAGCCACTT
GTTAGTTGTTACGGATGTCGAACTTGCTCATCATGGCGATGAGCAGAGGAAAGGAGAGACAGGGCAAGGCGGCATTGTGC
AAGGAGAGGAGGTAGGGTTTGCAGGCGCGGCCAAACTACTTAAATAATCGGTGCAGGCGGACCGGCCCGCTTCAATGCGG
GCGCAACGGTCGAAGTAGGCTTCTCGGAC------------------------------GCCGTTTGGTCACGTCGGCCT
GACCAGCATGAATGTGGTAGGTGACCGCCACGCATCCACTCTGGAGCGACATGAATGTGTGGTGAGTATTCTGGAGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----------------------------------------S--S----------------S-------S----SSSSSS
SSS---------------------------------------------S---S-S-S-S------S--------------
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----------------S---------------S-----------------------SS-----------S---------S
----------------------------SS--------------S---------S-------------------------
-----------------------------SS-------------------------------------------------
--------------SSSS---S----S-------SSS-SS------------------------S---------------
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------------------------------------S-----S------S------------S-----------------
-----S-S-S----S-----------------------------------------------------------------
-S------------------------------------------------------SSS------------------S--
------------------S---S-------------------------------------------------S-------
-----S-----------S------S--------------------------------------S----------------
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---------------------------------S---------S------------------------------------
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---------------------------S--------------------------------------S---SS-------S
-S----S---------S-------------------------------S-----------------S-------------
--------SS-----------S-----------------------------------------------S------S---
--------SS-----S---------------------S------SSSSS-------------S-----S---S-------
-----------------------------------------------------------S----------S---------
--------------SS-------------------------------S-------S-S---------------------S
S----------------------------------------S---S------------------------S---------
-------------------------S----S--S----S-------------S---------------------------
---------------S-------------S----------------------S---S-------------S-S-------
--S---------------S--S-------------S-S---------------S-----------S-S---SS-------
-------S----------S----SS------------------S--------S--------------S-----S------
--------------S--S---------S------S------------S-----S----S--S---S-------S------
---------------------------------S---S---------S---S-S--------S-----S-----------
------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
--S-S--------------------------SSS-------------------------------------------
>forward_617
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-------------------------------------GGGTCCTGCTTTAGCGATCA-----------------------
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>reverse_2674
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---------------------------------CATCCGCATTGAAGTGGCAC---------------------------
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