Multiple sequence alignment - TraesCS5D01G049800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G049800 chr5D 100.000 2484 0 0 1 2484 47300993 47298510 0.000000e+00 4588.0
1 TraesCS5D01G049800 chr5B 94.555 1708 55 9 23 1710 50278944 50277255 0.000000e+00 2604.0
2 TraesCS5D01G049800 chr5B 94.538 238 5 6 1824 2061 50277256 50277027 6.530000e-96 361.0
3 TraesCS5D01G049800 chr5B 97.521 121 3 0 1708 1828 446529746 446529626 9.000000e-50 207.0
4 TraesCS5D01G049800 chr5B 97.500 120 3 0 1706 1825 711156071 711155952 3.240000e-49 206.0
5 TraesCS5D01G049800 chr7B 81.886 403 66 7 2072 2471 577353757 577353359 1.420000e-87 333.0
6 TraesCS5D01G049800 chr6B 81.146 419 71 8 2070 2484 94314012 94313598 1.840000e-86 329.0
7 TraesCS5D01G049800 chr7D 96.875 128 4 0 1698 1825 629530380 629530507 5.380000e-52 215.0
8 TraesCS5D01G049800 chr6D 99.153 118 1 0 1708 1825 394829743 394829860 1.940000e-51 213.0
9 TraesCS5D01G049800 chr3D 96.154 130 3 2 1709 1838 66262960 66262833 6.960000e-51 211.0
10 TraesCS5D01G049800 chr1B 98.319 119 2 0 1709 1827 413494705 413494587 2.500000e-50 209.0
11 TraesCS5D01G049800 chr1B 92.500 80 4 2 2070 2148 49310113 49310191 2.020000e-21 113.0
12 TraesCS5D01G049800 chr5A 98.305 118 2 0 1709 1826 706438910 706439027 9.000000e-50 207.0
13 TraesCS5D01G049800 chr4B 97.500 120 3 0 1707 1826 660685930 660685811 3.240000e-49 206.0
14 TraesCS5D01G049800 chr4B 96.032 126 4 1 1702 1826 97557013 97557138 1.160000e-48 204.0
15 TraesCS5D01G049800 chr6A 76.442 208 37 12 1853 2057 226066380 226066182 4.370000e-18 102.0
16 TraesCS5D01G049800 chrUn 84.375 64 10 0 1868 1931 327609113 327609050 2.060000e-06 63.9
17 TraesCS5D01G049800 chrUn 84.375 64 10 0 1868 1931 349882530 349882467 2.060000e-06 63.9
18 TraesCS5D01G049800 chrUn 84.375 64 10 0 1868 1931 382294075 382294012 2.060000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G049800 chr5D 47298510 47300993 2483 True 4588.0 4588 100.0000 1 2484 1 chr5D.!!$R1 2483
1 TraesCS5D01G049800 chr5B 50277027 50278944 1917 True 1482.5 2604 94.5465 23 2061 2 chr5B.!!$R3 2038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 609 0.855349 GCTAGCGATCGATGTGTTGG 59.145 55.0 21.57 1.88 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2161 0.031043 TGACAGTACACGTTCGTGGG 59.969 55.0 25.14 15.28 40.16 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.502263 TGAAGCTCGCGAATGGAG 57.498 55.556 11.33 0.00 34.62 3.86
18 19 1.153568 TGAAGCTCGCGAATGGAGG 60.154 57.895 11.33 0.00 32.10 4.30
19 20 2.512515 AAGCTCGCGAATGGAGGC 60.513 61.111 11.33 9.18 32.10 4.70
20 21 3.315142 AAGCTCGCGAATGGAGGCA 62.315 57.895 11.33 0.00 32.10 4.75
21 22 3.267860 GCTCGCGAATGGAGGCAG 61.268 66.667 11.33 0.00 32.10 4.85
34 35 2.111251 GGCAGGCGGGTATCCTTC 59.889 66.667 0.00 0.00 0.00 3.46
251 267 7.308589 GGCATACTAATGTAACAGCTTATTGGG 60.309 40.741 0.00 0.00 35.38 4.12
263 279 2.612721 GCTTATTGGGGCCAACAAAGTG 60.613 50.000 14.99 9.36 38.88 3.16
272 288 2.660189 CCAACAAAGTGGCATCCATC 57.340 50.000 0.00 0.00 35.28 3.51
273 289 1.894466 CCAACAAAGTGGCATCCATCA 59.106 47.619 0.00 0.00 35.28 3.07
274 290 2.498481 CCAACAAAGTGGCATCCATCAT 59.502 45.455 0.00 0.00 35.28 2.45
275 291 3.700539 CCAACAAAGTGGCATCCATCATA 59.299 43.478 0.00 0.00 35.28 2.15
276 292 4.160065 CCAACAAAGTGGCATCCATCATAA 59.840 41.667 0.00 0.00 35.28 1.90
277 293 4.989279 ACAAAGTGGCATCCATCATAAC 57.011 40.909 0.00 0.00 35.28 1.89
344 360 6.985188 TTGCTGTAATTCTGTTGGTAGATC 57.015 37.500 0.00 0.00 0.00 2.75
434 450 7.838696 TCCAGGGTTGTATCAAAATCACATTAT 59.161 33.333 0.00 0.00 0.00 1.28
486 502 6.210078 TGTTTAGTTTTATTTGTCGCCAAGG 58.790 36.000 0.00 0.00 0.00 3.61
499 515 1.679944 CGCCAAGGATGTGAACCTGAT 60.680 52.381 0.00 0.00 37.85 2.90
500 516 2.019984 GCCAAGGATGTGAACCTGATC 58.980 52.381 0.00 0.00 37.85 2.92
504 520 4.194640 CAAGGATGTGAACCTGATCGATT 58.805 43.478 0.00 0.00 37.85 3.34
519 535 8.997323 ACCTGATCGATTTCTGATTTAATGATC 58.003 33.333 0.00 0.00 0.00 2.92
589 608 1.559831 TGCTAGCGATCGATGTGTTG 58.440 50.000 21.57 3.67 0.00 3.33
590 609 0.855349 GCTAGCGATCGATGTGTTGG 59.145 55.000 21.57 1.88 0.00 3.77
690 709 3.055240 ACTCCATGGCTCTTCTTGAAGAG 60.055 47.826 27.04 27.04 46.90 2.85
718 737 7.615365 TCAGGAAATGCATTAGTTAATGTTCCT 59.385 33.333 13.39 19.45 46.50 3.36
806 825 1.673665 GGAGCAACTGGGCACTCAG 60.674 63.158 0.00 0.00 40.40 3.35
846 865 1.499056 GATTGAGCAGTGTGGCACG 59.501 57.895 13.77 0.00 39.64 5.34
856 875 3.331150 CAGTGTGGCACGTATTTAGGAA 58.669 45.455 13.77 0.00 39.64 3.36
942 961 3.692101 AGAGTCAGTCTCCGACATTAGTG 59.308 47.826 0.00 0.00 43.71 2.74
951 970 3.035363 TCCGACATTAGTGGCTTGGATA 58.965 45.455 0.00 0.00 0.00 2.59
996 1015 3.312718 GCCTTGGGCCACATTGCA 61.313 61.111 5.23 0.00 44.06 4.08
1011 1030 2.906691 TTGCAAACATGGTGAAAGGG 57.093 45.000 0.00 0.00 0.00 3.95
1014 1033 0.038343 CAAACATGGTGAAAGGGGCG 60.038 55.000 0.00 0.00 0.00 6.13
1029 1048 1.407712 GGGGCGTCAGGTTTATGCTTA 60.408 52.381 0.00 0.00 0.00 3.09
1125 1144 3.412386 AGAAAACCCATCTTCTGTTCCG 58.588 45.455 0.00 0.00 30.67 4.30
1137 1156 0.173708 CTGTTCCGAGGCTAGTGGTC 59.826 60.000 0.00 0.00 0.00 4.02
1140 1159 1.310933 TTCCGAGGCTAGTGGTCGTC 61.311 60.000 8.91 0.00 31.65 4.20
1168 1187 3.181500 ACTTGAAGAGGTTTGTTTCGTGC 60.181 43.478 0.00 0.00 0.00 5.34
1174 1193 0.380378 GGTTTGTTTCGTGCTGAGCA 59.620 50.000 1.40 1.40 35.60 4.26
1180 1199 0.667453 TTTCGTGCTGAGCAATGCAA 59.333 45.000 9.51 0.00 41.47 4.08
1189 1208 6.857451 CGTGCTGAGCAATGCAAAATATTATA 59.143 34.615 9.51 0.00 41.47 0.98
1255 1274 3.450457 AGCTGGAGGAAGTATTGAGTGAG 59.550 47.826 0.00 0.00 0.00 3.51
1265 1284 3.521126 AGTATTGAGTGAGTGGAAGGCAT 59.479 43.478 0.00 0.00 0.00 4.40
1273 1292 0.904649 AGTGGAAGGCATCGATCACA 59.095 50.000 13.25 0.00 0.00 3.58
1288 1307 3.605916 CGATCACAGCGCTATCTATTGAC 59.394 47.826 10.99 1.30 0.00 3.18
1311 1330 2.079925 GAGTCAAGACATGCCCTTCAC 58.920 52.381 2.72 0.00 0.00 3.18
1314 1333 1.355381 TCAAGACATGCCCTTCACCAT 59.645 47.619 0.00 0.00 0.00 3.55
1342 1361 0.819259 AGTGCTTTGAGCGGCTTGAA 60.819 50.000 2.97 1.25 46.26 2.69
1385 1404 3.537795 ATATGATCCAAGCAGGCCAAT 57.462 42.857 5.01 0.00 37.29 3.16
1386 1405 1.410004 ATGATCCAAGCAGGCCAATG 58.590 50.000 5.01 0.00 37.29 2.82
1529 1548 6.576021 CATGACTTGCGACGAAAATAGATAG 58.424 40.000 0.00 0.00 0.00 2.08
1598 1619 3.431922 TTATAGGAGTACTGTGTGCGC 57.568 47.619 0.00 0.00 0.00 6.09
1632 1653 3.673809 GCTAACTGTTTGACACCTACGAG 59.326 47.826 6.17 0.00 0.00 4.18
1634 1655 1.270147 ACTGTTTGACACCTACGAGGC 60.270 52.381 0.00 0.00 39.63 4.70
1635 1656 1.000955 CTGTTTGACACCTACGAGGCT 59.999 52.381 0.00 0.00 39.63 4.58
1636 1657 2.230508 CTGTTTGACACCTACGAGGCTA 59.769 50.000 0.00 0.00 39.63 3.93
1637 1658 2.829720 TGTTTGACACCTACGAGGCTAT 59.170 45.455 0.00 0.00 39.63 2.97
1638 1659 3.187700 GTTTGACACCTACGAGGCTATG 58.812 50.000 0.00 0.00 39.63 2.23
1639 1660 2.430248 TGACACCTACGAGGCTATGA 57.570 50.000 0.00 0.00 39.63 2.15
1640 1661 2.945456 TGACACCTACGAGGCTATGAT 58.055 47.619 0.00 0.00 39.63 2.45
1641 1662 2.885266 TGACACCTACGAGGCTATGATC 59.115 50.000 0.00 0.00 39.63 2.92
1692 1713 4.502950 GCTATCTGTGCTCTTAATCCTGCT 60.503 45.833 0.00 0.00 0.00 4.24
1708 1729 3.195610 TCCTGCTGTCGACACATAGAAAT 59.804 43.478 15.76 0.00 0.00 2.17
1709 1730 4.401202 TCCTGCTGTCGACACATAGAAATA 59.599 41.667 15.76 0.00 0.00 1.40
1710 1731 4.504461 CCTGCTGTCGACACATAGAAATAC 59.496 45.833 15.76 0.00 0.00 1.89
1711 1732 5.324784 TGCTGTCGACACATAGAAATACT 57.675 39.130 15.76 0.00 0.00 2.12
1712 1733 5.340803 TGCTGTCGACACATAGAAATACTC 58.659 41.667 15.76 0.00 0.00 2.59
1713 1734 4.740695 GCTGTCGACACATAGAAATACTCC 59.259 45.833 15.76 0.00 0.00 3.85
1714 1735 5.258456 TGTCGACACATAGAAATACTCCC 57.742 43.478 15.76 0.00 0.00 4.30
1715 1736 4.954202 TGTCGACACATAGAAATACTCCCT 59.046 41.667 15.76 0.00 0.00 4.20
1716 1737 5.067413 TGTCGACACATAGAAATACTCCCTC 59.933 44.000 15.76 0.00 0.00 4.30
1717 1738 4.583489 TCGACACATAGAAATACTCCCTCC 59.417 45.833 0.00 0.00 0.00 4.30
1718 1739 4.556898 CGACACATAGAAATACTCCCTCCG 60.557 50.000 0.00 0.00 0.00 4.63
1719 1740 4.287552 ACACATAGAAATACTCCCTCCGT 58.712 43.478 0.00 0.00 0.00 4.69
1720 1741 4.341520 ACACATAGAAATACTCCCTCCGTC 59.658 45.833 0.00 0.00 0.00 4.79
1721 1742 3.896272 ACATAGAAATACTCCCTCCGTCC 59.104 47.826 0.00 0.00 0.00 4.79
1722 1743 1.400737 AGAAATACTCCCTCCGTCCG 58.599 55.000 0.00 0.00 0.00 4.79
1723 1744 0.388294 GAAATACTCCCTCCGTCCGG 59.612 60.000 0.00 0.00 0.00 5.14
1724 1745 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
1725 1746 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
1726 1747 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1727 1748 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1728 1749 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1729 1750 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1730 1751 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1731 1752 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1732 1753 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1733 1754 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1734 1755 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1735 1756 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1736 1757 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1737 1758 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
1738 1759 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
1739 1760 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
1740 1761 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
1741 1762 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
1742 1763 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
1743 1764 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
1744 1765 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
1745 1766 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
1746 1767 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
1747 1768 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
1748 1769 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
1752 1773 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
1754 1775 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
1755 1776 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
1757 1778 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
1758 1779 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
1789 1810 8.649973 AGTTCTAGATACGTTCATTTTCATCC 57.350 34.615 0.00 0.00 0.00 3.51
1790 1811 8.258007 AGTTCTAGATACGTTCATTTTCATCCA 58.742 33.333 0.00 0.00 0.00 3.41
1791 1812 9.046296 GTTCTAGATACGTTCATTTTCATCCAT 57.954 33.333 0.00 0.00 0.00 3.41
1792 1813 9.613428 TTCTAGATACGTTCATTTTCATCCATT 57.387 29.630 0.00 0.00 0.00 3.16
1793 1814 9.613428 TCTAGATACGTTCATTTTCATCCATTT 57.387 29.630 0.00 0.00 0.00 2.32
1795 1816 8.915871 AGATACGTTCATTTTCATCCATTTTG 57.084 30.769 0.00 0.00 0.00 2.44
1796 1817 8.739039 AGATACGTTCATTTTCATCCATTTTGA 58.261 29.630 0.00 0.00 0.00 2.69
1797 1818 9.520204 GATACGTTCATTTTCATCCATTTTGAT 57.480 29.630 0.00 0.00 0.00 2.57
1798 1819 7.585286 ACGTTCATTTTCATCCATTTTGATG 57.415 32.000 0.00 0.00 42.84 3.07
1810 1831 8.469200 TCATCCATTTTGATGACAAGTAATTCC 58.531 33.333 0.00 0.00 44.65 3.01
1811 1832 6.851609 TCCATTTTGATGACAAGTAATTCCG 58.148 36.000 0.00 0.00 37.32 4.30
1812 1833 6.035843 CCATTTTGATGACAAGTAATTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
1813 1834 6.127758 CCATTTTGATGACAAGTAATTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
1814 1835 5.873179 TTTGATGACAAGTAATTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1815 1836 3.517602 TGATGACAAGTAATTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1816 1837 2.373540 TGACAAGTAATTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1817 1838 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1818 1839 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1819 1840 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1820 1841 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1821 1842 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
1822 1843 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1837 1858 3.197333 GGAGGGAGTAGTTTGGAAGGTAC 59.803 52.174 0.00 0.00 0.00 3.34
1978 1999 6.824305 AGCTGCTTTTCTTGTGTTGTATAT 57.176 33.333 0.00 0.00 0.00 0.86
1979 2000 7.921786 AGCTGCTTTTCTTGTGTTGTATATA 57.078 32.000 0.00 0.00 0.00 0.86
1980 2001 8.511604 AGCTGCTTTTCTTGTGTTGTATATAT 57.488 30.769 0.00 0.00 0.00 0.86
1998 2019 1.760192 ATGCCTCTTTGAGTGATGCC 58.240 50.000 0.00 0.00 0.00 4.40
2020 2041 2.771372 ACAGGCCCATTGTCTTGTTTTT 59.229 40.909 0.00 0.00 0.00 1.94
2043 2064 6.949578 TTCTTTTTCTTTTCTTGTGTGCTG 57.050 33.333 0.00 0.00 0.00 4.41
2045 2066 5.184864 TCTTTTTCTTTTCTTGTGTGCTGGA 59.815 36.000 0.00 0.00 0.00 3.86
2046 2067 4.370364 TTTCTTTTCTTGTGTGCTGGAC 57.630 40.909 0.00 0.00 0.00 4.02
2047 2068 2.997980 TCTTTTCTTGTGTGCTGGACA 58.002 42.857 0.00 0.00 0.00 4.02
2048 2069 2.945008 TCTTTTCTTGTGTGCTGGACAG 59.055 45.455 0.98 0.00 34.28 3.51
2049 2070 2.418368 TTTCTTGTGTGCTGGACAGT 57.582 45.000 0.98 0.00 34.28 3.55
2050 2071 1.953559 TTCTTGTGTGCTGGACAGTC 58.046 50.000 0.98 0.00 34.28 3.51
2051 2072 0.829990 TCTTGTGTGCTGGACAGTCA 59.170 50.000 0.98 0.00 34.28 3.41
2052 2073 1.417517 TCTTGTGTGCTGGACAGTCAT 59.582 47.619 0.98 0.00 34.28 3.06
2053 2074 1.534163 CTTGTGTGCTGGACAGTCATG 59.466 52.381 0.98 0.00 34.28 3.07
2054 2075 0.469494 TGTGTGCTGGACAGTCATGT 59.531 50.000 0.98 0.00 44.31 3.21
2055 2076 0.870393 GTGTGCTGGACAGTCATGTG 59.130 55.000 0.98 0.00 40.68 3.21
2057 2078 1.302752 TGCTGGACAGTCATGTGCC 60.303 57.895 2.17 0.00 46.46 5.01
2058 2079 1.302752 GCTGGACAGTCATGTGCCA 60.303 57.895 2.17 0.00 46.46 4.92
2059 2080 0.679002 GCTGGACAGTCATGTGCCAT 60.679 55.000 2.17 0.00 46.46 4.40
2060 2081 1.376543 CTGGACAGTCATGTGCCATC 58.623 55.000 2.17 0.00 46.46 3.51
2061 2082 0.391528 TGGACAGTCATGTGCCATCG 60.392 55.000 2.17 0.00 46.46 3.84
2062 2083 1.709147 GGACAGTCATGTGCCATCGC 61.709 60.000 2.17 0.00 41.60 4.58
2063 2084 2.028766 GACAGTCATGTGCCATCGCG 62.029 60.000 0.00 0.00 40.68 5.87
2064 2085 3.197790 AGTCATGTGCCATCGCGC 61.198 61.111 0.00 0.00 46.11 6.86
2088 2109 3.228017 GAGCTCCTACTCCCCGCC 61.228 72.222 0.87 0.00 0.00 6.13
2089 2110 3.742248 GAGCTCCTACTCCCCGCCT 62.742 68.421 0.87 0.00 0.00 5.52
2090 2111 2.764547 GCTCCTACTCCCCGCCTT 60.765 66.667 0.00 0.00 0.00 4.35
2103 2124 4.540153 GCCTTCAGCGCCATCTAA 57.460 55.556 2.29 0.00 0.00 2.10
2104 2125 3.012560 GCCTTCAGCGCCATCTAAT 57.987 52.632 2.29 0.00 0.00 1.73
2105 2126 0.590195 GCCTTCAGCGCCATCTAATG 59.410 55.000 2.29 0.00 0.00 1.90
2106 2127 1.811558 GCCTTCAGCGCCATCTAATGA 60.812 52.381 2.29 0.00 0.00 2.57
2107 2128 2.564771 CCTTCAGCGCCATCTAATGAA 58.435 47.619 2.29 4.65 0.00 2.57
2108 2129 2.289002 CCTTCAGCGCCATCTAATGAAC 59.711 50.000 2.29 0.00 0.00 3.18
2109 2130 2.988010 TCAGCGCCATCTAATGAACT 57.012 45.000 2.29 0.00 0.00 3.01
2110 2131 2.554142 TCAGCGCCATCTAATGAACTG 58.446 47.619 2.29 0.00 0.00 3.16
2111 2132 1.600957 CAGCGCCATCTAATGAACTGG 59.399 52.381 2.29 0.00 0.00 4.00
2114 2135 0.308993 GCCATCTAATGAACTGGCGC 59.691 55.000 0.00 0.00 44.18 6.53
2115 2136 1.959042 CCATCTAATGAACTGGCGCT 58.041 50.000 7.64 0.00 0.00 5.92
2116 2137 1.869767 CCATCTAATGAACTGGCGCTC 59.130 52.381 7.64 0.00 0.00 5.03
2117 2138 1.524355 CATCTAATGAACTGGCGCTCG 59.476 52.381 7.64 0.30 0.00 5.03
2118 2139 0.530744 TCTAATGAACTGGCGCTCGT 59.469 50.000 7.64 1.06 0.00 4.18
2119 2140 0.924090 CTAATGAACTGGCGCTCGTC 59.076 55.000 7.64 0.29 0.00 4.20
2120 2141 0.800683 TAATGAACTGGCGCTCGTCG 60.801 55.000 7.64 0.00 42.12 5.12
2155 2176 2.341176 GGCCCACGAACGTGTACT 59.659 61.111 22.38 0.00 44.02 2.73
2156 2177 2.025418 GGCCCACGAACGTGTACTG 61.025 63.158 22.38 9.68 44.02 2.74
2157 2178 1.300388 GCCCACGAACGTGTACTGT 60.300 57.895 22.38 0.00 44.02 3.55
2158 2179 1.280206 GCCCACGAACGTGTACTGTC 61.280 60.000 22.38 4.87 44.02 3.51
2159 2180 0.031043 CCCACGAACGTGTACTGTCA 59.969 55.000 22.38 0.00 44.02 3.58
2160 2181 1.405461 CCACGAACGTGTACTGTCAG 58.595 55.000 22.38 0.00 44.02 3.51
2161 2182 0.776451 CACGAACGTGTACTGTCAGC 59.224 55.000 17.44 0.00 40.91 4.26
2162 2183 0.659417 ACGAACGTGTACTGTCAGCG 60.659 55.000 0.00 0.00 0.00 5.18
2163 2184 1.334992 CGAACGTGTACTGTCAGCGG 61.335 60.000 0.00 0.00 0.00 5.52
2164 2185 0.039798 GAACGTGTACTGTCAGCGGA 60.040 55.000 0.00 0.00 0.00 5.54
2165 2186 0.318445 AACGTGTACTGTCAGCGGAC 60.318 55.000 10.32 10.32 44.57 4.79
2194 2215 8.990163 AAATCCTAAAAGAAGTTACAAGACCA 57.010 30.769 0.00 0.00 0.00 4.02
2195 2216 8.622948 AATCCTAAAAGAAGTTACAAGACCAG 57.377 34.615 0.00 0.00 0.00 4.00
2196 2217 6.531021 TCCTAAAAGAAGTTACAAGACCAGG 58.469 40.000 0.00 0.00 0.00 4.45
2197 2218 6.328148 TCCTAAAAGAAGTTACAAGACCAGGA 59.672 38.462 0.00 0.00 0.00 3.86
2198 2219 7.017254 TCCTAAAAGAAGTTACAAGACCAGGAT 59.983 37.037 0.00 0.00 0.00 3.24
2199 2220 7.665974 CCTAAAAGAAGTTACAAGACCAGGATT 59.334 37.037 0.00 0.00 0.00 3.01
2200 2221 9.720769 CTAAAAGAAGTTACAAGACCAGGATTA 57.279 33.333 0.00 0.00 0.00 1.75
2201 2222 8.622948 AAAAGAAGTTACAAGACCAGGATTAG 57.377 34.615 0.00 0.00 0.00 1.73
2202 2223 7.554959 AAGAAGTTACAAGACCAGGATTAGA 57.445 36.000 0.00 0.00 0.00 2.10
2203 2224 7.554959 AGAAGTTACAAGACCAGGATTAGAA 57.445 36.000 0.00 0.00 0.00 2.10
2204 2225 7.387643 AGAAGTTACAAGACCAGGATTAGAAC 58.612 38.462 0.00 0.00 0.00 3.01
2205 2226 6.936968 AGTTACAAGACCAGGATTAGAACT 57.063 37.500 0.00 0.00 0.00 3.01
2206 2227 6.937392 AGTTACAAGACCAGGATTAGAACTC 58.063 40.000 0.00 0.00 0.00 3.01
2207 2228 6.497259 AGTTACAAGACCAGGATTAGAACTCA 59.503 38.462 0.00 0.00 0.00 3.41
2208 2229 5.153950 ACAAGACCAGGATTAGAACTCAC 57.846 43.478 0.00 0.00 0.00 3.51
2209 2230 4.177026 CAAGACCAGGATTAGAACTCACG 58.823 47.826 0.00 0.00 0.00 4.35
2210 2231 2.166664 AGACCAGGATTAGAACTCACGC 59.833 50.000 0.00 0.00 0.00 5.34
2211 2232 1.207329 ACCAGGATTAGAACTCACGCC 59.793 52.381 0.00 0.00 0.00 5.68
2212 2233 1.560923 CAGGATTAGAACTCACGCCG 58.439 55.000 0.00 0.00 0.00 6.46
2213 2234 1.135083 CAGGATTAGAACTCACGCCGT 60.135 52.381 0.00 0.00 0.00 5.68
2214 2235 1.549170 AGGATTAGAACTCACGCCGTT 59.451 47.619 0.00 0.00 0.00 4.44
2215 2236 2.028385 AGGATTAGAACTCACGCCGTTT 60.028 45.455 0.00 0.00 0.00 3.60
2216 2237 2.093783 GGATTAGAACTCACGCCGTTTG 59.906 50.000 0.00 0.00 0.00 2.93
2217 2238 0.863144 TTAGAACTCACGCCGTTTGC 59.137 50.000 0.00 0.00 0.00 3.68
2218 2239 0.032952 TAGAACTCACGCCGTTTGCT 59.967 50.000 0.00 0.00 38.05 3.91
2219 2240 0.814010 AGAACTCACGCCGTTTGCTT 60.814 50.000 0.00 0.00 38.05 3.91
2220 2241 0.384353 GAACTCACGCCGTTTGCTTC 60.384 55.000 0.00 0.00 38.05 3.86
2221 2242 0.814010 AACTCACGCCGTTTGCTTCT 60.814 50.000 0.00 0.00 38.05 2.85
2222 2243 0.032952 ACTCACGCCGTTTGCTTCTA 59.967 50.000 0.00 0.00 38.05 2.10
2223 2244 1.144969 CTCACGCCGTTTGCTTCTAA 58.855 50.000 0.00 0.00 38.05 2.10
2224 2245 1.529438 CTCACGCCGTTTGCTTCTAAA 59.471 47.619 0.00 0.00 38.05 1.85
2225 2246 1.941294 TCACGCCGTTTGCTTCTAAAA 59.059 42.857 0.00 0.00 38.05 1.52
2226 2247 2.041244 CACGCCGTTTGCTTCTAAAAC 58.959 47.619 0.00 0.00 38.05 2.43
2227 2248 1.002142 ACGCCGTTTGCTTCTAAAACC 60.002 47.619 0.00 0.00 38.05 3.27
2228 2249 1.002251 CGCCGTTTGCTTCTAAAACCA 60.002 47.619 0.00 0.00 38.05 3.67
2229 2250 2.390938 GCCGTTTGCTTCTAAAACCAC 58.609 47.619 0.00 0.00 34.67 4.16
2230 2251 2.034179 GCCGTTTGCTTCTAAAACCACT 59.966 45.455 0.00 0.00 34.67 4.00
2231 2252 3.852205 GCCGTTTGCTTCTAAAACCACTC 60.852 47.826 0.00 0.00 34.67 3.51
2232 2253 3.541711 CGTTTGCTTCTAAAACCACTCG 58.458 45.455 0.00 0.00 34.67 4.18
2233 2254 3.606153 CGTTTGCTTCTAAAACCACTCGG 60.606 47.826 0.00 0.00 34.67 4.63
2234 2255 1.519408 TGCTTCTAAAACCACTCGGC 58.481 50.000 0.00 0.00 34.57 5.54
2235 2256 1.071699 TGCTTCTAAAACCACTCGGCT 59.928 47.619 0.00 0.00 34.57 5.52
2236 2257 2.300723 TGCTTCTAAAACCACTCGGCTA 59.699 45.455 0.00 0.00 34.57 3.93
2237 2258 3.244284 TGCTTCTAAAACCACTCGGCTAA 60.244 43.478 0.00 0.00 34.57 3.09
2238 2259 3.124806 GCTTCTAAAACCACTCGGCTAAC 59.875 47.826 0.00 0.00 34.57 2.34
2239 2260 3.323751 TCTAAAACCACTCGGCTAACC 57.676 47.619 0.00 0.00 34.57 2.85
2240 2261 2.633967 TCTAAAACCACTCGGCTAACCA 59.366 45.455 0.00 0.00 34.57 3.67
2241 2262 1.601166 AAAACCACTCGGCTAACCAC 58.399 50.000 0.00 0.00 34.57 4.16
2242 2263 0.763035 AAACCACTCGGCTAACCACT 59.237 50.000 0.00 0.00 34.57 4.00
2243 2264 1.636148 AACCACTCGGCTAACCACTA 58.364 50.000 0.00 0.00 34.57 2.74
2244 2265 1.183549 ACCACTCGGCTAACCACTAG 58.816 55.000 0.00 0.00 34.57 2.57
2245 2266 1.272313 ACCACTCGGCTAACCACTAGA 60.272 52.381 0.00 0.00 34.57 2.43
2246 2267 1.405821 CCACTCGGCTAACCACTAGAG 59.594 57.143 0.00 0.00 34.57 2.43
2247 2268 1.104630 ACTCGGCTAACCACTAGAGC 58.895 55.000 0.00 0.00 34.57 4.09
2248 2269 1.341187 ACTCGGCTAACCACTAGAGCT 60.341 52.381 0.00 0.00 36.43 4.09
2249 2270 2.092538 ACTCGGCTAACCACTAGAGCTA 60.093 50.000 0.00 0.00 36.43 3.32
2250 2271 2.950309 CTCGGCTAACCACTAGAGCTAA 59.050 50.000 0.00 0.00 36.43 3.09
2251 2272 2.686915 TCGGCTAACCACTAGAGCTAAC 59.313 50.000 0.00 0.00 36.43 2.34
2252 2273 2.688958 CGGCTAACCACTAGAGCTAACT 59.311 50.000 0.00 0.00 36.43 2.24
2253 2274 3.489398 CGGCTAACCACTAGAGCTAACTG 60.489 52.174 0.00 0.00 36.43 3.16
2254 2275 3.449632 GCTAACCACTAGAGCTAACTGC 58.550 50.000 0.00 0.00 43.29 4.40
2255 2276 5.949422 GGCTAACCACTAGAGCTAACTGCT 61.949 50.000 0.00 0.00 45.94 4.24
2256 2277 7.362053 GGCTAACCACTAGAGCTAACTGCTT 62.362 48.000 0.00 0.00 44.24 3.91
2257 2278 8.078250 GGCTAACCACTAGAGCTAACTGCTTA 62.078 46.154 0.00 0.00 44.24 3.09
2258 2279 9.301448 GGCTAACCACTAGAGCTAACTGCTTAT 62.301 44.444 0.00 0.00 44.24 1.73
2267 2288 4.003519 GCTAACTGCTTATTGTGTTCCG 57.996 45.455 0.00 0.00 38.95 4.30
2268 2289 3.435671 GCTAACTGCTTATTGTGTTCCGT 59.564 43.478 0.00 0.00 38.95 4.69
2269 2290 4.083484 GCTAACTGCTTATTGTGTTCCGTT 60.083 41.667 0.00 0.00 38.95 4.44
2270 2291 3.896648 ACTGCTTATTGTGTTCCGTTG 57.103 42.857 0.00 0.00 0.00 4.10
2271 2292 3.211045 ACTGCTTATTGTGTTCCGTTGT 58.789 40.909 0.00 0.00 0.00 3.32
2272 2293 4.382291 ACTGCTTATTGTGTTCCGTTGTA 58.618 39.130 0.00 0.00 0.00 2.41
2273 2294 4.212636 ACTGCTTATTGTGTTCCGTTGTAC 59.787 41.667 0.00 0.00 0.00 2.90
2274 2295 3.499157 TGCTTATTGTGTTCCGTTGTACC 59.501 43.478 0.00 0.00 0.00 3.34
2275 2296 3.749609 GCTTATTGTGTTCCGTTGTACCT 59.250 43.478 0.00 0.00 0.00 3.08
2276 2297 4.142966 GCTTATTGTGTTCCGTTGTACCTC 60.143 45.833 0.00 0.00 0.00 3.85
2277 2298 1.855513 TTGTGTTCCGTTGTACCTCG 58.144 50.000 0.00 0.00 0.00 4.63
2278 2299 1.031235 TGTGTTCCGTTGTACCTCGA 58.969 50.000 8.08 0.00 0.00 4.04
2279 2300 1.614903 TGTGTTCCGTTGTACCTCGAT 59.385 47.619 8.08 0.00 0.00 3.59
2280 2301 2.819019 TGTGTTCCGTTGTACCTCGATA 59.181 45.455 8.08 0.00 0.00 2.92
2281 2302 3.119743 TGTGTTCCGTTGTACCTCGATAG 60.120 47.826 8.08 0.00 0.00 2.08
2282 2303 3.084039 TGTTCCGTTGTACCTCGATAGT 58.916 45.455 8.08 0.00 37.40 2.12
2283 2304 3.507233 TGTTCCGTTGTACCTCGATAGTT 59.493 43.478 8.08 0.00 37.40 2.24
2284 2305 4.699735 TGTTCCGTTGTACCTCGATAGTTA 59.300 41.667 8.08 0.00 37.40 2.24
2285 2306 5.357878 TGTTCCGTTGTACCTCGATAGTTAT 59.642 40.000 8.08 0.00 37.40 1.89
2286 2307 6.127647 TGTTCCGTTGTACCTCGATAGTTATT 60.128 38.462 8.08 0.00 37.40 1.40
2287 2308 7.066887 TGTTCCGTTGTACCTCGATAGTTATTA 59.933 37.037 8.08 0.00 37.40 0.98
2288 2309 7.566760 TCCGTTGTACCTCGATAGTTATTAA 57.433 36.000 8.08 0.00 37.40 1.40
2289 2310 7.417612 TCCGTTGTACCTCGATAGTTATTAAC 58.582 38.462 8.08 0.00 37.40 2.01
2290 2311 6.358030 CCGTTGTACCTCGATAGTTATTAACG 59.642 42.308 8.08 0.00 36.68 3.18
2291 2312 7.125755 CGTTGTACCTCGATAGTTATTAACGA 58.874 38.462 0.00 0.00 38.47 3.85
2292 2313 7.110765 CGTTGTACCTCGATAGTTATTAACGAC 59.889 40.741 0.00 7.60 38.47 4.34
2293 2314 6.649436 TGTACCTCGATAGTTATTAACGACG 58.351 40.000 12.86 12.86 33.67 5.12
2294 2315 5.991328 ACCTCGATAGTTATTAACGACGA 57.009 39.130 0.00 17.32 33.67 4.20
2295 2316 6.551385 ACCTCGATAGTTATTAACGACGAT 57.449 37.500 18.04 0.00 33.67 3.73
2296 2317 7.658179 ACCTCGATAGTTATTAACGACGATA 57.342 36.000 18.04 0.00 33.67 2.92
2297 2318 8.261492 ACCTCGATAGTTATTAACGACGATAT 57.739 34.615 18.04 11.21 33.67 1.63
2298 2319 8.173775 ACCTCGATAGTTATTAACGACGATATG 58.826 37.037 18.04 14.16 33.67 1.78
2299 2320 7.639072 CCTCGATAGTTATTAACGACGATATGG 59.361 40.741 18.04 14.42 33.67 2.74
2300 2321 6.963242 TCGATAGTTATTAACGACGATATGGC 59.037 38.462 0.00 0.00 32.49 4.40
2301 2322 6.195983 CGATAGTTATTAACGACGATATGGCC 59.804 42.308 0.00 0.00 36.23 5.36
2302 2323 5.464030 AGTTATTAACGACGATATGGCCT 57.536 39.130 3.32 0.00 36.23 5.19
2303 2324 5.227908 AGTTATTAACGACGATATGGCCTG 58.772 41.667 3.32 0.00 36.23 4.85
2304 2325 1.860676 TTAACGACGATATGGCCTGC 58.139 50.000 3.32 0.00 0.00 4.85
2305 2326 0.318360 TAACGACGATATGGCCTGCG 60.318 55.000 3.32 4.87 0.00 5.18
2306 2327 3.406361 CGACGATATGGCCTGCGC 61.406 66.667 3.32 0.00 0.00 6.09
2307 2328 3.406361 GACGATATGGCCTGCGCG 61.406 66.667 3.32 0.00 35.02 6.86
2308 2329 4.969196 ACGATATGGCCTGCGCGG 62.969 66.667 9.96 9.96 35.02 6.46
2309 2330 4.969196 CGATATGGCCTGCGCGGT 62.969 66.667 16.49 0.00 35.02 5.68
2310 2331 2.591715 GATATGGCCTGCGCGGTT 60.592 61.111 16.49 5.76 35.02 4.44
2311 2332 2.591715 ATATGGCCTGCGCGGTTC 60.592 61.111 16.49 7.29 35.02 3.62
2312 2333 4.849310 TATGGCCTGCGCGGTTCC 62.849 66.667 16.49 15.94 35.02 3.62
2316 2337 3.972276 GCCTGCGCGGTTCCAAAA 61.972 61.111 16.49 0.00 34.25 2.44
2317 2338 2.725008 CCTGCGCGGTTCCAAAAA 59.275 55.556 16.49 0.00 0.00 1.94
2340 2361 9.447157 AAAAATGAAAGTTCACAGATGGAAAAA 57.553 25.926 0.00 0.00 40.49 1.94
2384 2405 6.385649 AAAAAGAAAAGGCTCACGTATTCA 57.614 33.333 0.00 0.00 0.00 2.57
2385 2406 6.385649 AAAAGAAAAGGCTCACGTATTCAA 57.614 33.333 0.00 0.00 0.00 2.69
2386 2407 6.385649 AAAGAAAAGGCTCACGTATTCAAA 57.614 33.333 0.00 0.00 0.00 2.69
2387 2408 6.385649 AAGAAAAGGCTCACGTATTCAAAA 57.614 33.333 0.00 0.00 0.00 2.44
2388 2409 5.758924 AGAAAAGGCTCACGTATTCAAAAC 58.241 37.500 0.00 0.00 0.00 2.43
2389 2410 5.298276 AGAAAAGGCTCACGTATTCAAAACA 59.702 36.000 0.00 0.00 0.00 2.83
2390 2411 4.749245 AAGGCTCACGTATTCAAAACAG 57.251 40.909 0.00 0.00 0.00 3.16
2391 2412 3.740115 AGGCTCACGTATTCAAAACAGT 58.260 40.909 0.00 0.00 0.00 3.55
2392 2413 4.134563 AGGCTCACGTATTCAAAACAGTT 58.865 39.130 0.00 0.00 0.00 3.16
2393 2414 4.213482 AGGCTCACGTATTCAAAACAGTTC 59.787 41.667 0.00 0.00 0.00 3.01
2394 2415 4.024387 GGCTCACGTATTCAAAACAGTTCA 60.024 41.667 0.00 0.00 0.00 3.18
2395 2416 4.904154 GCTCACGTATTCAAAACAGTTCAC 59.096 41.667 0.00 0.00 0.00 3.18
2396 2417 5.503357 GCTCACGTATTCAAAACAGTTCACA 60.503 40.000 0.00 0.00 0.00 3.58
2397 2418 6.424176 TCACGTATTCAAAACAGTTCACAA 57.576 33.333 0.00 0.00 0.00 3.33
2398 2419 6.843208 TCACGTATTCAAAACAGTTCACAAA 58.157 32.000 0.00 0.00 0.00 2.83
2399 2420 7.476667 TCACGTATTCAAAACAGTTCACAAAT 58.523 30.769 0.00 0.00 0.00 2.32
2400 2421 8.613482 TCACGTATTCAAAACAGTTCACAAATA 58.387 29.630 0.00 0.00 0.00 1.40
2401 2422 9.227490 CACGTATTCAAAACAGTTCACAAATAA 57.773 29.630 0.00 0.00 0.00 1.40
2402 2423 9.959749 ACGTATTCAAAACAGTTCACAAATAAT 57.040 25.926 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.153568 CCTCCATTCGCGAGCTTCA 60.154 57.895 9.59 0.00 0.00 3.02
1 2 2.529619 GCCTCCATTCGCGAGCTTC 61.530 63.158 9.59 0.00 0.00 3.86
2 3 2.512515 GCCTCCATTCGCGAGCTT 60.513 61.111 9.59 0.00 0.00 3.74
3 4 3.729965 CTGCCTCCATTCGCGAGCT 62.730 63.158 9.59 0.00 0.00 4.09
4 5 3.267860 CTGCCTCCATTCGCGAGC 61.268 66.667 9.59 9.04 0.00 5.03
5 6 2.587194 CCTGCCTCCATTCGCGAG 60.587 66.667 9.59 0.00 0.00 5.03
6 7 4.838152 GCCTGCCTCCATTCGCGA 62.838 66.667 3.71 3.71 0.00 5.87
10 11 2.056906 ATACCCGCCTGCCTCCATTC 62.057 60.000 0.00 0.00 0.00 2.67
11 12 2.056906 GATACCCGCCTGCCTCCATT 62.057 60.000 0.00 0.00 0.00 3.16
12 13 2.448542 ATACCCGCCTGCCTCCAT 60.449 61.111 0.00 0.00 0.00 3.41
13 14 3.161450 GATACCCGCCTGCCTCCA 61.161 66.667 0.00 0.00 0.00 3.86
14 15 3.942439 GGATACCCGCCTGCCTCC 61.942 72.222 0.00 0.00 0.00 4.30
15 16 2.384653 GAAGGATACCCGCCTGCCTC 62.385 65.000 0.00 0.00 35.50 4.70
16 17 2.366972 AAGGATACCCGCCTGCCT 60.367 61.111 0.00 0.00 35.50 4.75
17 18 2.111251 GAAGGATACCCGCCTGCC 59.889 66.667 0.00 0.00 35.50 4.85
18 19 2.280186 CGAAGGATACCCGCCTGC 60.280 66.667 0.00 0.00 35.50 4.85
34 35 1.134946 GAAAACATCCCAATCTGCCCG 59.865 52.381 0.00 0.00 0.00 6.13
273 289 9.730705 CCAATCAGTAACATATCATCCAGTTAT 57.269 33.333 0.00 0.00 0.00 1.89
274 290 7.661437 GCCAATCAGTAACATATCATCCAGTTA 59.339 37.037 0.00 0.00 0.00 2.24
275 291 6.488006 GCCAATCAGTAACATATCATCCAGTT 59.512 38.462 0.00 0.00 0.00 3.16
276 292 6.000219 GCCAATCAGTAACATATCATCCAGT 59.000 40.000 0.00 0.00 0.00 4.00
277 293 6.148976 CAGCCAATCAGTAACATATCATCCAG 59.851 42.308 0.00 0.00 0.00 3.86
344 360 7.840342 ATTCACAGCTCATCTAACAAACTAG 57.160 36.000 0.00 0.00 0.00 2.57
486 502 5.111989 TCAGAAATCGATCAGGTTCACATC 58.888 41.667 0.00 0.00 0.00 3.06
499 515 8.816640 TCATCGATCATTAAATCAGAAATCGA 57.183 30.769 0.00 6.96 44.96 3.59
519 535 8.278408 CACTCCATCTGTTATTTGTAATCATCG 58.722 37.037 0.00 0.00 0.00 3.84
690 709 8.986477 AACATTAACTAATGCATTTCCTGAAC 57.014 30.769 18.75 0.00 45.24 3.18
718 737 7.718314 AGCTTCAGTCATCAATGCTAAATATGA 59.282 33.333 0.00 0.00 0.00 2.15
806 825 2.736531 CCCCAGTTTGTGCAAGGC 59.263 61.111 0.00 0.00 0.00 4.35
846 865 7.939588 AGATATGCTTCCCAAGTTCCTAAATAC 59.060 37.037 0.00 0.00 0.00 1.89
856 875 2.441001 CCCTCAGATATGCTTCCCAAGT 59.559 50.000 0.00 0.00 0.00 3.16
993 1012 1.047002 CCCCTTTCACCATGTTTGCA 58.953 50.000 0.00 0.00 0.00 4.08
996 1015 0.469144 ACGCCCCTTTCACCATGTTT 60.469 50.000 0.00 0.00 0.00 2.83
1011 1030 2.351726 CAGTAAGCATAAACCTGACGCC 59.648 50.000 0.00 0.00 0.00 5.68
1014 1033 4.156008 CCAACCAGTAAGCATAAACCTGAC 59.844 45.833 0.00 0.00 0.00 3.51
1125 1144 1.139947 GCTGACGACCACTAGCCTC 59.860 63.158 0.00 0.00 0.00 4.70
1137 1156 1.000283 ACCTCTTCAAGTGAGCTGACG 60.000 52.381 0.00 0.00 0.00 4.35
1140 1159 3.209410 ACAAACCTCTTCAAGTGAGCTG 58.791 45.455 0.00 0.00 0.00 4.24
1189 1208 6.391227 TGACACACAGATCGTCATACATAT 57.609 37.500 0.00 0.00 34.83 1.78
1255 1274 1.293924 CTGTGATCGATGCCTTCCAC 58.706 55.000 0.54 4.02 0.00 4.02
1265 1284 3.502211 TCAATAGATAGCGCTGTGATCGA 59.498 43.478 22.90 12.09 0.00 3.59
1273 1292 2.619177 ACTCACGTCAATAGATAGCGCT 59.381 45.455 17.26 17.26 0.00 5.92
1288 1307 0.036952 AGGGCATGTCTTGACTCACG 60.037 55.000 0.00 0.00 32.03 4.35
1296 1315 1.617804 CCATGGTGAAGGGCATGTCTT 60.618 52.381 2.57 0.00 0.00 3.01
1311 1330 1.577328 AAAGCACTCGTTCGCCATGG 61.577 55.000 7.63 7.63 0.00 3.66
1314 1333 1.221466 CTCAAAGCACTCGTTCGCCA 61.221 55.000 0.00 0.00 0.00 5.69
1360 1379 3.497405 GGCCTGCTTGGATCATATTCTGA 60.497 47.826 0.00 0.00 38.35 3.27
1362 1381 2.444388 TGGCCTGCTTGGATCATATTCT 59.556 45.455 3.32 0.00 38.35 2.40
1372 1391 1.766494 TCATACATTGGCCTGCTTGG 58.234 50.000 3.32 0.00 39.35 3.61
1385 1404 2.672874 CAGCACGCTTTAGCTTCATACA 59.327 45.455 0.00 0.00 39.50 2.29
1386 1405 2.930040 TCAGCACGCTTTAGCTTCATAC 59.070 45.455 0.00 0.00 39.50 2.39
1430 1449 0.108207 CTCATGTCCCCAGCATCCTC 59.892 60.000 0.00 0.00 0.00 3.71
1491 1510 0.745845 GTCATGCTACCTGTGCTGGG 60.746 60.000 0.00 0.00 0.00 4.45
1529 1548 7.576861 AAGTGCTACCTTCTCTTCTATACTC 57.423 40.000 0.00 0.00 0.00 2.59
1598 1619 5.298276 TCAAACAGTTAGCAAACCCACTTAG 59.702 40.000 0.00 0.00 36.15 2.18
1632 1653 4.111198 CGATCATAGCACAGATCATAGCC 58.889 47.826 11.25 0.00 40.45 3.93
1634 1655 4.562000 GCACGATCATAGCACAGATCATAG 59.438 45.833 11.25 3.59 40.45 2.23
1635 1656 4.022068 TGCACGATCATAGCACAGATCATA 60.022 41.667 11.25 0.00 40.45 2.15
1636 1657 3.243975 TGCACGATCATAGCACAGATCAT 60.244 43.478 11.25 0.00 40.45 2.45
1637 1658 2.101249 TGCACGATCATAGCACAGATCA 59.899 45.455 11.25 0.00 40.45 2.92
1638 1659 2.747436 TGCACGATCATAGCACAGATC 58.253 47.619 0.00 0.00 37.79 2.75
1639 1660 2.896745 TGCACGATCATAGCACAGAT 57.103 45.000 0.00 0.00 32.55 2.90
1692 1713 4.954202 AGGGAGTATTTCTATGTGTCGACA 59.046 41.667 15.76 15.76 36.22 4.35
1708 1729 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1709 1730 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1710 1731 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1711 1732 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1712 1733 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1713 1734 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1714 1735 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1715 1736 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1716 1737 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1717 1738 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
1718 1739 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
1719 1740 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
1720 1741 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
1721 1742 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
1722 1743 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
1726 1747 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
1728 1749 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
1729 1750 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
1731 1752 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
1732 1753 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
1763 1784 9.745880 GGATGAAAATGAACGTATCTAGAACTA 57.254 33.333 0.00 0.00 0.00 2.24
1764 1785 8.258007 TGGATGAAAATGAACGTATCTAGAACT 58.742 33.333 0.00 0.00 0.00 3.01
1765 1786 8.420374 TGGATGAAAATGAACGTATCTAGAAC 57.580 34.615 0.00 0.00 0.00 3.01
1766 1787 9.613428 AATGGATGAAAATGAACGTATCTAGAA 57.387 29.630 0.00 0.00 0.00 2.10
1767 1788 9.613428 AAATGGATGAAAATGAACGTATCTAGA 57.387 29.630 0.00 0.00 0.00 2.43
1770 1791 8.739039 TCAAAATGGATGAAAATGAACGTATCT 58.261 29.630 0.00 0.00 0.00 1.98
1771 1792 8.909708 TCAAAATGGATGAAAATGAACGTATC 57.090 30.769 0.00 0.00 0.00 2.24
1772 1793 9.304731 CATCAAAATGGATGAAAATGAACGTAT 57.695 29.630 0.00 0.00 46.00 3.06
1773 1794 8.686397 CATCAAAATGGATGAAAATGAACGTA 57.314 30.769 0.00 0.00 46.00 3.57
1774 1795 7.585286 CATCAAAATGGATGAAAATGAACGT 57.415 32.000 0.00 0.00 46.00 3.99
1785 1806 7.433131 CGGAATTACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
1786 1807 7.416664 CCGGAATTACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
1787 1808 6.127758 CCGGAATTACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
1788 1809 6.035843 CCGGAATTACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
1789 1810 6.747280 GTCCGGAATTACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1790 1811 6.403200 CGTCCGGAATTACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1791 1812 5.106869 CGTCCGGAATTACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1792 1813 4.390603 CGTCCGGAATTACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1793 1814 3.930229 CGTCCGGAATTACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1794 1815 3.517602 CGTCCGGAATTACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1795 1816 2.864343 CCGTCCGGAATTACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1796 1817 2.498481 TCCGTCCGGAATTACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1797 1818 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1798 1819 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1799 1820 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1800 1821 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1801 1822 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
1802 1823 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
1803 1824 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
1804 1825 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
1805 1826 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
1806 1827 0.467659 CTACTCCCTCCGTCCGGAAT 60.468 60.000 5.23 0.00 44.66 3.01
1807 1828 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
1808 1829 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
1809 1830 0.969409 AAACTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
1810 1831 0.172803 CAAACTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
1811 1832 0.535797 CCAAACTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.00 4.79
1812 1833 1.553706 TCCAAACTACTCCCTCCGTC 58.446 55.000 0.00 0.00 0.00 4.79
1813 1834 1.900486 CTTCCAAACTACTCCCTCCGT 59.100 52.381 0.00 0.00 0.00 4.69
1814 1835 1.207329 CCTTCCAAACTACTCCCTCCG 59.793 57.143 0.00 0.00 0.00 4.63
1815 1836 2.267192 ACCTTCCAAACTACTCCCTCC 58.733 52.381 0.00 0.00 0.00 4.30
1816 1837 3.119209 CGTACCTTCCAAACTACTCCCTC 60.119 52.174 0.00 0.00 0.00 4.30
1817 1838 2.830321 CGTACCTTCCAAACTACTCCCT 59.170 50.000 0.00 0.00 0.00 4.20
1818 1839 2.827921 TCGTACCTTCCAAACTACTCCC 59.172 50.000 0.00 0.00 0.00 4.30
1819 1840 3.675502 GCTCGTACCTTCCAAACTACTCC 60.676 52.174 0.00 0.00 0.00 3.85
1820 1841 3.509740 GCTCGTACCTTCCAAACTACTC 58.490 50.000 0.00 0.00 0.00 2.59
1821 1842 2.233186 GGCTCGTACCTTCCAAACTACT 59.767 50.000 0.00 0.00 0.00 2.57
1822 1843 2.028748 TGGCTCGTACCTTCCAAACTAC 60.029 50.000 0.00 0.00 0.00 2.73
1837 1858 4.314740 AAGTAATCTAGAAGCTGGCTCG 57.685 45.455 0.00 0.00 0.00 5.03
1978 1999 2.239402 TGGCATCACTCAAAGAGGCATA 59.761 45.455 2.28 0.00 43.96 3.14
1979 2000 1.005097 TGGCATCACTCAAAGAGGCAT 59.995 47.619 2.28 0.00 43.96 4.40
1980 2001 0.401356 TGGCATCACTCAAAGAGGCA 59.599 50.000 2.28 0.00 43.96 4.75
1998 2019 1.331214 AACAAGACAATGGGCCTGTG 58.669 50.000 4.53 5.17 0.00 3.66
2020 2041 5.868801 CCAGCACACAAGAAAAGAAAAAGAA 59.131 36.000 0.00 0.00 0.00 2.52
2021 2042 5.184864 TCCAGCACACAAGAAAAGAAAAAGA 59.815 36.000 0.00 0.00 0.00 2.52
2022 2043 5.289434 GTCCAGCACACAAGAAAAGAAAAAG 59.711 40.000 0.00 0.00 0.00 2.27
2023 2044 5.167845 GTCCAGCACACAAGAAAAGAAAAA 58.832 37.500 0.00 0.00 0.00 1.94
2071 2092 3.228017 GGCGGGGAGTAGGAGCTC 61.228 72.222 4.71 4.71 34.89 4.09
2072 2093 3.318922 AAGGCGGGGAGTAGGAGCT 62.319 63.158 0.00 0.00 0.00 4.09
2073 2094 2.764547 AAGGCGGGGAGTAGGAGC 60.765 66.667 0.00 0.00 0.00 4.70
2074 2095 1.381327 TGAAGGCGGGGAGTAGGAG 60.381 63.158 0.00 0.00 0.00 3.69
2075 2096 1.381327 CTGAAGGCGGGGAGTAGGA 60.381 63.158 0.00 0.00 0.00 2.94
2076 2097 3.095347 GCTGAAGGCGGGGAGTAGG 62.095 68.421 0.00 0.00 0.00 3.18
2077 2098 2.501610 GCTGAAGGCGGGGAGTAG 59.498 66.667 0.00 0.00 0.00 2.57
2086 2107 0.590195 CATTAGATGGCGCTGAAGGC 59.410 55.000 7.64 0.00 37.64 4.35
2087 2108 2.245159 TCATTAGATGGCGCTGAAGG 57.755 50.000 7.64 0.00 0.00 3.46
2088 2109 3.002042 CAGTTCATTAGATGGCGCTGAAG 59.998 47.826 7.64 0.00 0.00 3.02
2089 2110 2.938451 CAGTTCATTAGATGGCGCTGAA 59.062 45.455 7.64 4.42 0.00 3.02
2090 2111 2.554142 CAGTTCATTAGATGGCGCTGA 58.446 47.619 7.64 0.00 0.00 4.26
2101 2122 0.800683 CGACGAGCGCCAGTTCATTA 60.801 55.000 2.29 0.00 0.00 1.90
2102 2123 2.094659 CGACGAGCGCCAGTTCATT 61.095 57.895 2.29 0.00 0.00 2.57
2103 2124 2.507102 CGACGAGCGCCAGTTCAT 60.507 61.111 2.29 0.00 0.00 2.57
2136 2157 4.360964 TACACGTTCGTGGGCCGG 62.361 66.667 25.14 0.00 40.16 6.13
2137 2158 3.107661 GTACACGTTCGTGGGCCG 61.108 66.667 25.14 4.50 40.16 6.13
2138 2159 2.025418 CAGTACACGTTCGTGGGCC 61.025 63.158 25.14 14.10 40.16 5.80
2139 2160 1.280206 GACAGTACACGTTCGTGGGC 61.280 60.000 25.14 17.70 40.16 5.36
2140 2161 0.031043 TGACAGTACACGTTCGTGGG 59.969 55.000 25.14 15.28 40.16 4.61
2141 2162 1.405461 CTGACAGTACACGTTCGTGG 58.595 55.000 25.14 12.42 40.16 4.94
2142 2163 0.776451 GCTGACAGTACACGTTCGTG 59.224 55.000 21.13 21.13 41.47 4.35
2143 2164 0.659417 CGCTGACAGTACACGTTCGT 60.659 55.000 3.99 0.00 0.00 3.85
2144 2165 1.334992 CCGCTGACAGTACACGTTCG 61.335 60.000 3.99 0.00 0.00 3.95
2145 2166 0.039798 TCCGCTGACAGTACACGTTC 60.040 55.000 3.99 0.00 0.00 3.95
2146 2167 0.318445 GTCCGCTGACAGTACACGTT 60.318 55.000 3.99 0.00 41.37 3.99
2147 2168 1.285023 GTCCGCTGACAGTACACGT 59.715 57.895 3.99 0.00 41.37 4.49
2148 2169 1.284715 TGTCCGCTGACAGTACACG 59.715 57.895 6.89 0.00 46.40 4.49
2168 2189 9.416284 TGGTCTTGTAACTTCTTTTAGGATTTT 57.584 29.630 0.00 0.00 0.00 1.82
2169 2190 8.990163 TGGTCTTGTAACTTCTTTTAGGATTT 57.010 30.769 0.00 0.00 0.00 2.17
2170 2191 7.665974 CCTGGTCTTGTAACTTCTTTTAGGATT 59.334 37.037 0.00 0.00 0.00 3.01
2171 2192 7.017254 TCCTGGTCTTGTAACTTCTTTTAGGAT 59.983 37.037 0.00 0.00 0.00 3.24
2172 2193 6.328148 TCCTGGTCTTGTAACTTCTTTTAGGA 59.672 38.462 0.00 0.00 0.00 2.94
2173 2194 6.531021 TCCTGGTCTTGTAACTTCTTTTAGG 58.469 40.000 0.00 0.00 0.00 2.69
2174 2195 8.622948 AATCCTGGTCTTGTAACTTCTTTTAG 57.377 34.615 0.00 0.00 0.00 1.85
2175 2196 9.720769 CTAATCCTGGTCTTGTAACTTCTTTTA 57.279 33.333 0.00 0.00 0.00 1.52
2176 2197 8.437575 TCTAATCCTGGTCTTGTAACTTCTTTT 58.562 33.333 0.00 0.00 0.00 2.27
2177 2198 7.974504 TCTAATCCTGGTCTTGTAACTTCTTT 58.025 34.615 0.00 0.00 0.00 2.52
2178 2199 7.554959 TCTAATCCTGGTCTTGTAACTTCTT 57.445 36.000 0.00 0.00 0.00 2.52
2179 2200 7.235812 AGTTCTAATCCTGGTCTTGTAACTTCT 59.764 37.037 0.00 0.00 0.00 2.85
2180 2201 7.387643 AGTTCTAATCCTGGTCTTGTAACTTC 58.612 38.462 0.00 0.00 0.00 3.01
2181 2202 7.016268 TGAGTTCTAATCCTGGTCTTGTAACTT 59.984 37.037 0.00 0.00 0.00 2.66
2182 2203 6.497259 TGAGTTCTAATCCTGGTCTTGTAACT 59.503 38.462 0.00 4.05 0.00 2.24
2183 2204 6.590677 GTGAGTTCTAATCCTGGTCTTGTAAC 59.409 42.308 0.00 0.00 0.00 2.50
2184 2205 6.571731 CGTGAGTTCTAATCCTGGTCTTGTAA 60.572 42.308 0.00 0.00 0.00 2.41
2185 2206 5.105877 CGTGAGTTCTAATCCTGGTCTTGTA 60.106 44.000 0.00 0.00 0.00 2.41
2186 2207 4.322049 CGTGAGTTCTAATCCTGGTCTTGT 60.322 45.833 0.00 0.00 0.00 3.16
2187 2208 4.177026 CGTGAGTTCTAATCCTGGTCTTG 58.823 47.826 0.00 0.00 0.00 3.02
2188 2209 3.368531 GCGTGAGTTCTAATCCTGGTCTT 60.369 47.826 0.00 0.00 0.00 3.01
2189 2210 2.166664 GCGTGAGTTCTAATCCTGGTCT 59.833 50.000 0.00 0.00 0.00 3.85
2190 2211 2.541556 GCGTGAGTTCTAATCCTGGTC 58.458 52.381 0.00 0.00 0.00 4.02
2191 2212 1.207329 GGCGTGAGTTCTAATCCTGGT 59.793 52.381 0.00 0.00 0.00 4.00
2192 2213 1.802880 CGGCGTGAGTTCTAATCCTGG 60.803 57.143 0.00 0.00 0.00 4.45
2193 2214 1.135083 ACGGCGTGAGTTCTAATCCTG 60.135 52.381 13.76 0.00 0.00 3.86
2194 2215 1.183549 ACGGCGTGAGTTCTAATCCT 58.816 50.000 13.76 0.00 0.00 3.24
2195 2216 2.005971 AACGGCGTGAGTTCTAATCC 57.994 50.000 15.70 0.00 0.00 3.01
2196 2217 2.474032 GCAAACGGCGTGAGTTCTAATC 60.474 50.000 15.70 0.00 0.00 1.75
2197 2218 1.463444 GCAAACGGCGTGAGTTCTAAT 59.537 47.619 15.70 0.00 0.00 1.73
2198 2219 0.863144 GCAAACGGCGTGAGTTCTAA 59.137 50.000 15.70 0.00 0.00 2.10
2199 2220 2.524300 GCAAACGGCGTGAGTTCTA 58.476 52.632 15.70 0.00 0.00 2.10
2200 2221 3.330275 GCAAACGGCGTGAGTTCT 58.670 55.556 15.70 0.00 0.00 3.01
2209 2230 2.034179 AGTGGTTTTAGAAGCAAACGGC 59.966 45.455 0.00 0.00 44.11 5.68
2210 2231 3.606153 CGAGTGGTTTTAGAAGCAAACGG 60.606 47.826 13.39 0.00 44.11 4.44
2211 2232 3.541711 CGAGTGGTTTTAGAAGCAAACG 58.458 45.455 0.00 5.41 44.11 3.60
2212 2233 3.852205 GCCGAGTGGTTTTAGAAGCAAAC 60.852 47.826 0.00 0.00 44.11 2.93
2213 2234 2.292292 GCCGAGTGGTTTTAGAAGCAAA 59.708 45.455 0.00 0.00 44.11 3.68
2214 2235 1.877443 GCCGAGTGGTTTTAGAAGCAA 59.123 47.619 0.00 0.00 44.11 3.91
2215 2236 1.071699 AGCCGAGTGGTTTTAGAAGCA 59.928 47.619 0.00 0.00 40.69 3.91
2216 2237 1.809684 AGCCGAGTGGTTTTAGAAGC 58.190 50.000 0.00 0.00 37.67 3.86
2217 2238 3.683340 GGTTAGCCGAGTGGTTTTAGAAG 59.317 47.826 0.00 0.00 37.67 2.85
2218 2239 3.071312 TGGTTAGCCGAGTGGTTTTAGAA 59.929 43.478 0.00 0.00 37.67 2.10
2219 2240 2.633967 TGGTTAGCCGAGTGGTTTTAGA 59.366 45.455 0.00 0.00 37.67 2.10
2220 2241 2.740447 GTGGTTAGCCGAGTGGTTTTAG 59.260 50.000 0.00 0.00 37.67 1.85
2221 2242 2.369532 AGTGGTTAGCCGAGTGGTTTTA 59.630 45.455 0.00 0.00 37.67 1.52
2222 2243 1.142262 AGTGGTTAGCCGAGTGGTTTT 59.858 47.619 0.00 0.00 37.67 2.43
2223 2244 0.763035 AGTGGTTAGCCGAGTGGTTT 59.237 50.000 0.00 0.00 37.67 3.27
2224 2245 1.549170 CTAGTGGTTAGCCGAGTGGTT 59.451 52.381 0.00 0.00 37.67 3.67
2225 2246 1.183549 CTAGTGGTTAGCCGAGTGGT 58.816 55.000 0.00 0.00 37.67 4.16
2226 2247 1.405821 CTCTAGTGGTTAGCCGAGTGG 59.594 57.143 0.00 0.00 37.67 4.00
2227 2248 1.202313 GCTCTAGTGGTTAGCCGAGTG 60.202 57.143 0.00 0.00 37.67 3.51
2228 2249 1.104630 GCTCTAGTGGTTAGCCGAGT 58.895 55.000 0.00 0.00 37.67 4.18
2229 2250 1.394618 AGCTCTAGTGGTTAGCCGAG 58.605 55.000 0.00 0.00 36.92 4.63
2230 2251 2.686915 GTTAGCTCTAGTGGTTAGCCGA 59.313 50.000 1.33 0.00 36.92 5.54
2231 2252 2.688958 AGTTAGCTCTAGTGGTTAGCCG 59.311 50.000 1.33 0.00 36.92 5.52
2232 2253 3.738590 GCAGTTAGCTCTAGTGGTTAGCC 60.739 52.174 1.33 0.00 41.15 3.93
2233 2254 3.449632 GCAGTTAGCTCTAGTGGTTAGC 58.550 50.000 1.33 0.00 41.15 3.09
2246 2267 3.435671 ACGGAACACAATAAGCAGTTAGC 59.564 43.478 0.00 0.00 46.19 3.09
2247 2268 5.049680 ACAACGGAACACAATAAGCAGTTAG 60.050 40.000 0.00 0.00 0.00 2.34
2248 2269 4.817464 ACAACGGAACACAATAAGCAGTTA 59.183 37.500 0.00 0.00 0.00 2.24
2249 2270 3.630312 ACAACGGAACACAATAAGCAGTT 59.370 39.130 0.00 0.00 0.00 3.16
2250 2271 3.211045 ACAACGGAACACAATAAGCAGT 58.789 40.909 0.00 0.00 0.00 4.40
2251 2272 3.896648 ACAACGGAACACAATAAGCAG 57.103 42.857 0.00 0.00 0.00 4.24
2252 2273 3.499157 GGTACAACGGAACACAATAAGCA 59.501 43.478 0.00 0.00 0.00 3.91
2253 2274 3.749609 AGGTACAACGGAACACAATAAGC 59.250 43.478 0.00 0.00 0.00 3.09
2254 2275 4.090930 CGAGGTACAACGGAACACAATAAG 59.909 45.833 0.00 0.00 0.00 1.73
2255 2276 3.989167 CGAGGTACAACGGAACACAATAA 59.011 43.478 0.00 0.00 0.00 1.40
2256 2277 3.255395 TCGAGGTACAACGGAACACAATA 59.745 43.478 10.15 0.00 0.00 1.90
2257 2278 2.036217 TCGAGGTACAACGGAACACAAT 59.964 45.455 10.15 0.00 0.00 2.71
2258 2279 1.408340 TCGAGGTACAACGGAACACAA 59.592 47.619 10.15 0.00 0.00 3.33
2259 2280 1.031235 TCGAGGTACAACGGAACACA 58.969 50.000 10.15 0.00 0.00 3.72
2260 2281 2.358939 ATCGAGGTACAACGGAACAC 57.641 50.000 10.15 0.00 0.00 3.32
2261 2282 3.084039 ACTATCGAGGTACAACGGAACA 58.916 45.455 10.15 0.00 0.00 3.18
2262 2283 3.772060 ACTATCGAGGTACAACGGAAC 57.228 47.619 10.15 0.00 0.00 3.62
2263 2284 6.455360 AATAACTATCGAGGTACAACGGAA 57.545 37.500 10.15 0.59 0.00 4.30
2264 2285 7.417612 GTTAATAACTATCGAGGTACAACGGA 58.582 38.462 10.15 0.00 0.00 4.69
2265 2286 6.358030 CGTTAATAACTATCGAGGTACAACGG 59.642 42.308 10.15 0.00 40.07 4.44
2266 2287 7.110765 GTCGTTAATAACTATCGAGGTACAACG 59.889 40.741 10.04 10.04 42.51 4.10
2267 2288 7.110765 CGTCGTTAATAACTATCGAGGTACAAC 59.889 40.741 1.42 0.00 34.87 3.32
2268 2289 7.011016 TCGTCGTTAATAACTATCGAGGTACAA 59.989 37.037 1.42 0.00 38.16 2.41
2269 2290 6.478673 TCGTCGTTAATAACTATCGAGGTACA 59.521 38.462 1.42 0.00 38.16 2.90
2270 2291 6.877855 TCGTCGTTAATAACTATCGAGGTAC 58.122 40.000 1.42 0.00 38.16 3.34
2271 2292 7.658179 ATCGTCGTTAATAACTATCGAGGTA 57.342 36.000 14.78 0.00 38.16 3.08
2272 2293 5.991328 TCGTCGTTAATAACTATCGAGGT 57.009 39.130 1.42 0.00 38.16 3.85
2273 2294 7.639072 CCATATCGTCGTTAATAACTATCGAGG 59.361 40.741 14.78 8.02 38.25 4.63
2274 2295 7.163845 GCCATATCGTCGTTAATAACTATCGAG 59.836 40.741 14.78 6.97 33.48 4.04
2275 2296 6.963242 GCCATATCGTCGTTAATAACTATCGA 59.037 38.462 13.00 13.00 33.17 3.59
2276 2297 6.195983 GGCCATATCGTCGTTAATAACTATCG 59.804 42.308 0.00 3.94 0.00 2.92
2277 2298 7.220300 CAGGCCATATCGTCGTTAATAACTATC 59.780 40.741 5.01 0.00 0.00 2.08
2278 2299 7.033791 CAGGCCATATCGTCGTTAATAACTAT 58.966 38.462 5.01 0.00 0.00 2.12
2279 2300 6.384224 CAGGCCATATCGTCGTTAATAACTA 58.616 40.000 5.01 0.00 0.00 2.24
2280 2301 5.227908 CAGGCCATATCGTCGTTAATAACT 58.772 41.667 5.01 0.00 0.00 2.24
2281 2302 4.143179 GCAGGCCATATCGTCGTTAATAAC 60.143 45.833 5.01 0.00 0.00 1.89
2282 2303 3.991773 GCAGGCCATATCGTCGTTAATAA 59.008 43.478 5.01 0.00 0.00 1.40
2283 2304 3.581755 GCAGGCCATATCGTCGTTAATA 58.418 45.455 5.01 0.00 0.00 0.98
2284 2305 2.413837 GCAGGCCATATCGTCGTTAAT 58.586 47.619 5.01 0.00 0.00 1.40
2285 2306 1.860676 GCAGGCCATATCGTCGTTAA 58.139 50.000 5.01 0.00 0.00 2.01
2286 2307 0.318360 CGCAGGCCATATCGTCGTTA 60.318 55.000 5.01 0.00 0.00 3.18
2287 2308 1.591594 CGCAGGCCATATCGTCGTT 60.592 57.895 5.01 0.00 0.00 3.85
2288 2309 2.027605 CGCAGGCCATATCGTCGT 59.972 61.111 5.01 0.00 0.00 4.34
2289 2310 3.406361 GCGCAGGCCATATCGTCG 61.406 66.667 5.01 0.00 0.00 5.12
2290 2311 3.406361 CGCGCAGGCCATATCGTC 61.406 66.667 8.75 0.00 35.02 4.20
2291 2312 4.969196 CCGCGCAGGCCATATCGT 62.969 66.667 8.75 0.00 35.02 3.73
2292 2313 4.969196 ACCGCGCAGGCCATATCG 62.969 66.667 16.48 3.29 46.52 2.92
2293 2314 2.591715 AACCGCGCAGGCCATATC 60.592 61.111 16.48 0.00 46.52 1.63
2294 2315 2.591715 GAACCGCGCAGGCCATAT 60.592 61.111 16.48 0.79 46.52 1.78
2295 2316 4.849310 GGAACCGCGCAGGCCATA 62.849 66.667 16.48 0.00 46.52 2.74
2299 2320 3.492311 TTTTTGGAACCGCGCAGGC 62.492 57.895 16.48 3.38 46.52 4.85
2314 2335 9.447157 TTTTTCCATCTGTGAACTTTCATTTTT 57.553 25.926 0.00 0.00 39.73 1.94
2361 2382 6.385649 TGAATACGTGAGCCTTTTCTTTTT 57.614 33.333 0.00 0.00 0.00 1.94
2362 2383 6.385649 TTGAATACGTGAGCCTTTTCTTTT 57.614 33.333 0.00 0.00 0.00 2.27
2363 2384 6.385649 TTTGAATACGTGAGCCTTTTCTTT 57.614 33.333 0.00 0.00 0.00 2.52
2364 2385 6.183360 TGTTTTGAATACGTGAGCCTTTTCTT 60.183 34.615 0.00 0.00 0.00 2.52
2365 2386 5.298276 TGTTTTGAATACGTGAGCCTTTTCT 59.702 36.000 0.00 0.00 0.00 2.52
2366 2387 5.516090 TGTTTTGAATACGTGAGCCTTTTC 58.484 37.500 0.00 0.00 0.00 2.29
2367 2388 5.067283 ACTGTTTTGAATACGTGAGCCTTTT 59.933 36.000 0.00 0.00 0.00 2.27
2368 2389 4.578928 ACTGTTTTGAATACGTGAGCCTTT 59.421 37.500 0.00 0.00 0.00 3.11
2369 2390 4.134563 ACTGTTTTGAATACGTGAGCCTT 58.865 39.130 0.00 0.00 0.00 4.35
2370 2391 3.740115 ACTGTTTTGAATACGTGAGCCT 58.260 40.909 0.00 0.00 0.00 4.58
2371 2392 4.024387 TGAACTGTTTTGAATACGTGAGCC 60.024 41.667 0.00 0.00 0.00 4.70
2372 2393 4.904154 GTGAACTGTTTTGAATACGTGAGC 59.096 41.667 0.00 0.00 0.00 4.26
2373 2394 6.043327 TGTGAACTGTTTTGAATACGTGAG 57.957 37.500 0.00 0.00 0.00 3.51
2374 2395 6.424176 TTGTGAACTGTTTTGAATACGTGA 57.576 33.333 0.00 0.00 0.00 4.35
2375 2396 7.678194 ATTTGTGAACTGTTTTGAATACGTG 57.322 32.000 0.00 0.00 0.00 4.49
2376 2397 9.959749 ATTATTTGTGAACTGTTTTGAATACGT 57.040 25.926 0.00 0.00 0.00 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.