>input_sequence_78734
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----------------------------------------------------------ATGGTGAAAGGGGCGTCAGGTT
TATGCTTACTGGTTGGAGGCGCCATCCAGCGCATCATGGAGAGGCAAGAGCCGGGGATGGGCGCTGGGCCGCAAGGAGAT
GTAGAAAACCCATCTTCTGTTCCGAGGCTAGTGGTCGTCAGCTCACTTGAAGAGGTTTGTTTCGTGCTGAGCAATGCAAA
ATATTATATATGTATGACGATCTGTGTGTCATCCTAACTGGTTTGTTTTGCAGCTGGAGGAAGTATTGAGTGAGTGGAAG
GCATCGATCACAGCGCTATCTATTGACGTGAGTCAAGACATGCCCTTCACCATGGCGAACGAGTGCTTTGAGCGGCTTGA
ATTGGATGGCTTGCAAGCTCAGAATATGATCCAAGCAGGCCAATGTATGAAGCTAAAGCGTGCTGAGTACCTGCGTGCCC
AGGCGCAGGAGGATGCTGGGGACATGAGCCACAGCGGAGCACCAGTGGCCCCGGGGTCATGA------------------
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>chr5D_1_TraesCS5D01G049800
TGAAGCTCGCGAATGGAGGCAGGCGGGTATCCTTCGGGCAGATTGGGATGTTTTCTTGGGGGAAATATCCGGTTGGATCC
TAGTGAGTAGTAGTTCTAGGTTTTGGTAGGCATAAGTTGAGCGGTTGAGGTGAAATTTTTTAACACCTCCATGTGCATGG
---------------ATCTTTTTTAATACAGTATATATGATACACATGCTTGTGCGTAATCTAGAAAAAGGTAATTTGCA
GGCATACTAATGTAACAGCTTATTGGGGCCAACAAAGTGGCATCCATCATAACTGGATGATATGTTACTGATTGGCTGTA
TAGAGATTATGTCCTTTTGCTGTAATTCTGTTGGTAGATCTAGTTTGTTAGATGAGCTGTGAATTAGGAGAGATGAGAGT
TTAGCGGCATATATATGTTAAATTCCAGGGTTGTATCAAAATCACATTATATAGTTGATTACTATAACTTTTGAGACTGT
TTAGTTTTATTTGTCGCCAAGGATGTGAACCTGATCGATTTCTGATTTAATGATCGATGATTACAAATAACAGATG---G
AGTGTCAGGTATATTTGTGCTCTAATCTTGCTAGCGATCGATGTGTTGGTTTTTTATTATAGTTGATGCCACTCTGTTCA
TTTGTTGATTAATTTTGTGTAAAGGGTTCTTGAGTTTTGATTTGTAACTCCATGGCTCTTCTTGAAGAGTTCAGGAAATG
CATTAGTTAATGTTCCTCATATTTAGCATTGATGACTGAAGCTCATAAAAAATGTAACTAATTTGATTCAGTTTCACTGA
ATGCAGGGAGCAACTGGGCACTCAGCCTTGCACAAACTGGGGCAAGGATTGAGCAGTGTGGCACGTATTTAGGAACTTGG
GAAGCATATCTGAGGGGCCGCAGTGAATTCTTGTGCCAATTAGCAGATTTCGTGCCTGAGAGTCAGTCTCCGACATTAGT
GGCTTGGATAGCTGGGGCTTGTGGTGGCTTGGGCAAGGCCTTGGGCCACATTGCAAACATGGTGAAAGGGGCGTCAGGTT
TATGCTTACTGGTTGGAGGCGCCATCCAGCGCATCATGGAGAGGCAAGAGCCGGGGATGGGCGCTGGGCCGCAAGGAGAT
GTAGAAAACCCATCTTCTGTTCCGAGGCTAGTGGTCGTCAGCTCACTTGAAGAGGTTTGTTTCGTGCTGAGCAATGCAAA
ATATTATATATGTATGACGATCTGTGTGTCATCCTAACTGGTTTGTTTTGCAGCTGGAGGAAGTATTGAGTGAGTGGAAG
GCATCGATCACAGCGCTATCTATTGACGTGAGTCAAGACATGCCCTTCACCATGGCGAACGAGTGCTTTGAGCGGCTTGA
ATTGGATGGCTTGCAAGCTCAGAATATGATCCAAGCAGGCCAATGTATGAAGCTAAAGCGTGCTGAGTACCTGCGTGCCC
AGGCGCAGGAGGATGCTGGGGACATGAGCCACAGCGGAGCACCAGTGGCCCCGGGGTCATGAGCCCCAGCCCAGCACAGG
TAGCATGACTTGCGACGAAAATAGATAGAGTATAGAAGAGAAGGTAGCACTTTTTAGAGCTAGTAGTATGGATGCTTT--
ATAGGAGTACTGTGTGCGCTAAGTGGGTTTGCTAACTGTTTGACACCTACGAGGCTATGATCTGTGCTATGATCGTGCAC
ACGGATTTTGCTATCTGTGCTCTTAATCCTGCTGTCGACACATAGAAATACTCCCTCCGTCCGGAAATACTTGTCATTGA
AATGGATGTATCTAGATGTATTTTAGTTCTAGATACGTTCATTTTCATCCATTTTGATGACAAGTAATTCCGGACGGAGG
GAGTAGTTTGGAAGGTACGAGCCAGCTTCTAGATTACTTTGAAGGTGCTGCTAAAACTCAGTCGACTGAGTTTTTAGGAA
GTCTCAGTCGATGTCTTTGACCATTGGATTATATTCAGTTTTGAGATCTGTGAATAGCTGCTTTTCTTGTGTTGTATATA
TGCCTCTTTGAGTGATGCCACAGGCCCATTGTCTTGTTTTTTCTTTTTCTTTTCTTGTGTGCTGGACAGTCATGTGCCAT
CGCGCAGCGGGGAGCTCCTACTCCCCGCCTTCAGCGCCATCTAATGAACTGGCGCTCGTCGCAGCGCCTTGCTGGGCCGG
CCCACGAACGTGTACTGTCAGCGGACAAAAAATCCTAAAAGAAGTTACAAGACCAGGATTAGAACTCACGCCGTTTGCTT
CTAAAACCACTCGGCTAACCACTAGAGCTAACTGCTTATTGTGTTCCGTTGTACCTCGATAGTTATTAACGACGATATGG
CCTGCGCGGTTCCAAAAAATGAAAGTTCACAGATGGAAAAAAAGTTCGCGAATTTTTTTCAAAAAAGAAAAGGCTCACGT
ATTCAAAACAGTTCACAAATAATGAAATTTTTTCACAAAATTTCAAAAATATCACAAATTTAAAACATTTAGTGAGTTTG
AAAAAAGTTCACATATTTGAAAAA
>chr5B_23
----------------------GCGGGTATCCTTAGGGCAGATTGGGATGTTTTCTTGGGGGAAATATCCGGTTGGATCC
TAGTGAGTAGTAGTTCTAGGTTTTGGTAGGCATAAGTTGAGCGGTTGAGGTGAAATTTTTTAACACCTCCATGTGGATGG
ATGTCTTACCCTCTTATCTTTTTTAATACAGTATGTATGATACACATGCTTGTGCGTAATCTAGAAAAAGGTAATTTGCA
GGCATACTAATGTAACAGCTTATTGGAGCCAACAAAGTCGCATCCA-------TGGATGATATGTTACTGATTGGCTGTA
TAGAGATTATGTCCTTTTGCTGTAATTCTGTTGGTAGATTTAGTTTGTTAGATGAGCTGTGAATTAGGAGAGATGAGAGT
TTAGCGGCATATATATGTTAAATTCCAGGGTTGTATCAAAATCACATTACATAGTTGATTACTATAACTTTTGAGACTGT
TTAGTTTTATTTGTCGCCAAGAATGTGAACCTGACAGATGTCTGATTTAATGATTGATGATTACAAATAACAGATGAAGG
AGTGTCAGGTATATTTGTGCTCTAATCTTGCTAGCGATCGATGTGTT--TTTTTTATTATAGTTGATGCCACTCTGTTCA
TTTGTTGATTAATTTTGTGTAAAGGGTTCTTGAGTTTTGATTTGTAACTCCATGGCTCTTCTTGAAGAATTCAGGAAATG
CATTAGTTAATGTTCCCCATATTTAGCATTTCTGACTGAAGCTCATAAAAAATGTAACTAATTTGATTCAGTTTCACTGA
ATGCAGGGAGCAACTGGGCACTCAACCTTGCACAAACTGGGGCAAGGATTGAGCAGTGTGGCACATATTTAGGATCTTGG
GAAGCATATCTGAGGGGCCGCAGTGAATTCTTGTGCCAATTAGCAGATTTCGTGCCTGAGAGTCAGTCTCCGACATTAGT
TGCTTGGATGGCTGGGGCTTGTGGTGGCTTGGGCAAGGCCTTGGGCCACATCGCGAACATGGTGAAAGGCGCATCAGGTT
TATGCTTGCTGGTTGGAGGCGCCATCCAGCGCATCATGGAGAGGCAAGAGCTGGGGATGGGCGCTGGGCCGCAAGGAGAT
GTAGAAAACCCATCTTCTGTTCCAAGGCTAGTGGTTGTGAGCTCACTTGAAGAGGTTTGTTTCGTGTTGAGCGATGCAGA
ATATTATTTATGTATGACGATCTGTGTGTCATCCTAACTGGTTTGTTTTGCAGCTGGAGGAAGTATTGAGTGAATGGAAG
GCAGCGATCACCGCGCTATCTATTGATGTGAGTCCAGACATGCCCTTCAGCACGGCGAACGAGTGCTTTGAGCGGCTTGA
GTTGGATGGCTTGCAAGCGCTGAATATGATTCAAGCAGGCCAACATATGAAGCTAAAGCGTGCTGAGTACCTGCGTGCCC
AGACGCAGCAGGATGCTGGGGACATGAGCCACAGCGGAGCACCAGTGGCCCCGGGGACATGAGCCCCAGACCAGCACCGG
TAGCATGACTTGCGACG-AAATAGATACAGTATAGAAGAGAAGGTAGCACTTTTTAGAGCTAGTAGTATGGATGCTTTAC
ATAGGAGTACTGTGTGCGTTAAGTGGGTTTGCTAACTGTTTGACACCTACGATG--------TGTGCTATGATCGTGCAC
ACGGATTTTGCTATCTGTGCTCTTAATCCTGCCGTCGACACATAGAAA--------------------------------
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---TAGTTTGGAAGGTATGAGCCAGCTTCTAGATTACTTTGAAGGTGCTGCTAAAACTCAGTCGACTGAGTTTTTAGGAA
GTCTCAGTCGATGTCTTTGACCATTGGATTATATTCAGTTTTGAGATCTGTGAATAGCTGCTTTTCTTGTGTTGTATAG-
-GCCTCTTTGAGTGATGCGACAGGCCCATTGTCTTGTTTTC---TTTTCTTTTCTTGTGTGCTCGCAG------------
-------------------------------CAGCGCCATC---------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSS------------S---------------------------------------------
---------------------------------------------------------------------------S----
----------------------------------S---------------------------------------------
--------------------------S-----------S-------SSSSSSS---------------------------
---------------------------------------S----------------------------------------
-------------------------------------------------S------------------------------
---------------------S------------SS---S--------------S-------------------------
-----------------------------------------------SS-------------------------------
--------------------------------------------------------------------S-----------
----------------S-------------SS------------------------------------------------
------------------------S---------------------------------------S---------S-----
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S--------S-----------------------------------------S--S--------------S--S-------
-------S-------------------------------------------S----------------------------
-----------------------S-----------S--S---------------------------S-----S-----S-
-------S-----------------------------------------------------------------S------
---S-------S--------------S-------S--------------S--S---------------------------
S-----------------S-S---------S------------SS-----------------------------------
--S-----S-----------------------------------------------S------------S-------S--
-----------------S---------S----------------------------------------------------
------------------S---------------------------------S-SSSSSSSS------------------
--------------------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------S--------------------------------------------------------------
------------------------------------------------------------------------------SS
S-----------------S---------------------SSSS-------------------S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_609
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-----------------------------GCTAGCGATCGATGTGTTGG-------------------------------
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>reverse_2161
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CCCACGAACGTGTACTGTCA------------------------------------------------------------
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