Multiple sequence alignment - TraesCS5D01G045900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G045900 chr5D 100.000 3318 0 0 1 3318 45042691 45039374 0.000000e+00 6128.0
1 TraesCS5D01G045900 chr5D 95.918 49 1 1 2378 2425 388860955 388861003 9.870000e-11 78.7
2 TraesCS5D01G045900 chr2D 96.013 953 31 6 2369 3318 31013497 31012549 0.000000e+00 1543.0
3 TraesCS5D01G045900 chr5B 89.975 1197 85 13 1053 2244 45023899 45022733 0.000000e+00 1513.0
4 TraesCS5D01G045900 chr5B 86.439 1202 121 15 1113 2288 45026380 45025195 0.000000e+00 1279.0
5 TraesCS5D01G045900 chr5B 87.014 1055 107 12 1089 2128 44891116 44892155 0.000000e+00 1162.0
6 TraesCS5D01G045900 chr5B 97.426 272 6 1 366 637 271155268 271154998 2.330000e-126 462.0
7 TraesCS5D01G045900 chr5B 91.212 330 27 2 1767 2096 45002606 45002279 6.530000e-122 448.0
8 TraesCS5D01G045900 chr5B 88.199 161 12 5 804 963 45024095 45023941 5.650000e-43 185.0
9 TraesCS5D01G045900 chr5B 81.910 199 18 11 52 241 271155859 271155670 5.730000e-33 152.0
10 TraesCS5D01G045900 chr7D 91.860 946 67 10 2378 3318 147687444 147686504 0.000000e+00 1312.0
11 TraesCS5D01G045900 chr5A 96.159 807 23 2 1 799 439846333 439845527 0.000000e+00 1312.0
12 TraesCS5D01G045900 chr5A 86.535 557 41 9 1045 1580 35734292 35733749 1.720000e-162 582.0
13 TraesCS5D01G045900 chr5A 90.141 426 34 1 1742 2159 35700549 35700124 6.260000e-152 547.0
14 TraesCS5D01G045900 chr5A 85.714 182 15 6 623 795 345757590 345757411 7.310000e-42 182.0
15 TraesCS5D01G045900 chr5A 97.143 70 2 0 1582 1651 35700943 35700874 5.810000e-23 119.0
16 TraesCS5D01G045900 chr2A 95.931 811 24 3 1 803 43669478 43670287 0.000000e+00 1306.0
17 TraesCS5D01G045900 chr2A 91.099 955 53 18 2382 3318 47316062 47317002 0.000000e+00 1264.0
18 TraesCS5D01G045900 chr2A 91.573 178 7 4 626 795 43663208 43663385 4.280000e-59 239.0
19 TraesCS5D01G045900 chr2A 85.185 189 17 7 616 795 762400049 762400235 2.030000e-42 183.0
20 TraesCS5D01G045900 chr1B 95.037 806 30 5 1 798 623270208 623271011 0.000000e+00 1258.0
21 TraesCS5D01G045900 chr1B 90.055 181 10 2 623 795 623242671 623242851 9.260000e-56 228.0
22 TraesCS5D01G045900 chr1B 95.918 49 1 1 2378 2425 481324978 481325026 9.870000e-11 78.7
23 TraesCS5D01G045900 chr1B 92.157 51 2 2 2379 2427 32992227 32992177 1.650000e-08 71.3
24 TraesCS5D01G045900 chr4D 90.093 969 58 24 2378 3318 234705180 234706138 0.000000e+00 1223.0
25 TraesCS5D01G045900 chr6B 95.956 272 11 0 366 637 342808008 342808279 3.040000e-120 442.0
26 TraesCS5D01G045900 chr6B 91.071 56 3 2 2371 2425 162605372 162605318 1.280000e-09 75.0
27 TraesCS5D01G045900 chrUn 81.628 430 65 11 2814 3232 134381839 134382265 8.810000e-91 344.0
28 TraesCS5D01G045900 chr7A 80.886 429 64 12 2814 3232 470919701 470920121 4.130000e-84 322.0
29 TraesCS5D01G045900 chr7A 78.937 508 69 22 2733 3234 598329257 598329732 8.940000e-81 311.0
30 TraesCS5D01G045900 chr4A 78.917 517 74 21 2720 3232 532840228 532840713 5.340000e-83 318.0
31 TraesCS5D01G045900 chr4A 81.991 211 19 12 599 796 690237096 690237300 9.530000e-36 161.0
32 TraesCS5D01G045900 chr1D 78.351 485 77 21 2810 3274 192574202 192573726 4.190000e-74 289.0
33 TraesCS5D01G045900 chr2B 88.947 190 12 4 614 795 439913200 439913388 3.330000e-55 226.0
34 TraesCS5D01G045900 chr2B 89.326 178 10 5 626 795 439894513 439894689 7.210000e-52 215.0
35 TraesCS5D01G045900 chr2B 85.641 195 16 6 610 795 563618831 563618640 9.390000e-46 195.0
36 TraesCS5D01G045900 chr4B 87.179 156 11 5 649 795 86708806 86708961 5.690000e-38 169.0
37 TraesCS5D01G045900 chr3B 81.132 212 24 10 599 798 825991296 825991503 4.430000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G045900 chr5D 45039374 45042691 3317 True 6128.000000 6128 100.000000 1 3318 1 chr5D.!!$R1 3317
1 TraesCS5D01G045900 chr2D 31012549 31013497 948 True 1543.000000 1543 96.013000 2369 3318 1 chr2D.!!$R1 949
2 TraesCS5D01G045900 chr5B 44891116 44892155 1039 False 1162.000000 1162 87.014000 1089 2128 1 chr5B.!!$F1 1039
3 TraesCS5D01G045900 chr5B 45022733 45026380 3647 True 992.333333 1513 88.204333 804 2288 3 chr5B.!!$R2 1484
4 TraesCS5D01G045900 chr5B 271154998 271155859 861 True 307.000000 462 89.668000 52 637 2 chr5B.!!$R3 585
5 TraesCS5D01G045900 chr7D 147686504 147687444 940 True 1312.000000 1312 91.860000 2378 3318 1 chr7D.!!$R1 940
6 TraesCS5D01G045900 chr5A 439845527 439846333 806 True 1312.000000 1312 96.159000 1 799 1 chr5A.!!$R3 798
7 TraesCS5D01G045900 chr5A 35733749 35734292 543 True 582.000000 582 86.535000 1045 1580 1 chr5A.!!$R1 535
8 TraesCS5D01G045900 chr5A 35700124 35700943 819 True 333.000000 547 93.642000 1582 2159 2 chr5A.!!$R4 577
9 TraesCS5D01G045900 chr2A 43669478 43670287 809 False 1306.000000 1306 95.931000 1 803 1 chr2A.!!$F2 802
10 TraesCS5D01G045900 chr2A 47316062 47317002 940 False 1264.000000 1264 91.099000 2382 3318 1 chr2A.!!$F3 936
11 TraesCS5D01G045900 chr1B 623270208 623271011 803 False 1258.000000 1258 95.037000 1 798 1 chr1B.!!$F3 797
12 TraesCS5D01G045900 chr4D 234705180 234706138 958 False 1223.000000 1223 90.093000 2378 3318 1 chr4D.!!$F1 940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 1262 0.102481 CGTATGCCTCCTAACACGCT 59.898 55.0 0.00 0.00 0.00 5.07 F
1019 1312 0.104304 ACCTTCGAAGACGTGCTTGT 59.896 50.0 26.61 9.97 36.83 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 5154 0.253044 AGCATCCACACCGCATTACT 59.747 50.0 0.0 0.0 0.0 2.24 R
2594 5688 0.690762 ACCACCGTACAATGAAGCCT 59.309 50.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 251 2.202349 GTCGCGTTTGCTGCCATC 60.202 61.111 5.77 0.00 39.65 3.51
330 490 2.125753 GCTGTGTCGCCTGAGAGG 60.126 66.667 0.00 0.00 38.80 3.69
726 1011 5.418840 CCCTCATTACAAGGCAGTTACAAAT 59.581 40.000 0.00 0.00 32.15 2.32
727 1012 6.404734 CCCTCATTACAAGGCAGTTACAAATC 60.405 42.308 0.00 0.00 32.15 2.17
729 1014 6.908825 TCATTACAAGGCAGTTACAAATCAC 58.091 36.000 0.00 0.00 0.00 3.06
730 1015 6.714810 TCATTACAAGGCAGTTACAAATCACT 59.285 34.615 0.00 0.00 0.00 3.41
732 1017 4.718961 ACAAGGCAGTTACAAATCACTCT 58.281 39.130 0.00 0.00 0.00 3.24
733 1018 4.757149 ACAAGGCAGTTACAAATCACTCTC 59.243 41.667 0.00 0.00 0.00 3.20
735 1020 4.573900 AGGCAGTTACAAATCACTCTCTG 58.426 43.478 0.00 0.00 0.00 3.35
810 1103 9.603921 AATTCCTAACAATATTGATGCAAAAGG 57.396 29.630 22.16 12.69 0.00 3.11
811 1104 6.572519 TCCTAACAATATTGATGCAAAAGGC 58.427 36.000 22.16 0.00 45.13 4.35
823 1116 3.764885 GCAAAAGGCACACTACTATGG 57.235 47.619 0.00 0.00 43.97 2.74
824 1117 3.343617 GCAAAAGGCACACTACTATGGA 58.656 45.455 0.00 0.00 43.97 3.41
825 1118 3.756434 GCAAAAGGCACACTACTATGGAA 59.244 43.478 0.00 0.00 43.97 3.53
826 1119 4.217550 GCAAAAGGCACACTACTATGGAAA 59.782 41.667 0.00 0.00 43.97 3.13
827 1120 5.278758 GCAAAAGGCACACTACTATGGAAAA 60.279 40.000 0.00 0.00 43.97 2.29
828 1121 5.959618 AAAGGCACACTACTATGGAAAAC 57.040 39.130 0.00 0.00 0.00 2.43
829 1122 4.634012 AGGCACACTACTATGGAAAACA 57.366 40.909 0.00 0.00 0.00 2.83
830 1123 5.179452 AGGCACACTACTATGGAAAACAT 57.821 39.130 0.00 0.00 43.68 2.71
831 1124 4.943705 AGGCACACTACTATGGAAAACATG 59.056 41.667 0.00 0.00 40.82 3.21
832 1125 4.438744 GGCACACTACTATGGAAAACATGC 60.439 45.833 0.00 0.00 40.82 4.06
833 1126 4.396166 GCACACTACTATGGAAAACATGCT 59.604 41.667 0.00 0.00 40.82 3.79
834 1127 5.106157 GCACACTACTATGGAAAACATGCTT 60.106 40.000 0.00 0.00 40.82 3.91
835 1128 6.570378 GCACACTACTATGGAAAACATGCTTT 60.570 38.462 0.00 0.00 40.82 3.51
836 1129 7.370383 CACACTACTATGGAAAACATGCTTTT 58.630 34.615 0.00 1.12 40.82 2.27
837 1130 7.326789 CACACTACTATGGAAAACATGCTTTTG 59.673 37.037 9.70 0.00 40.82 2.44
838 1131 7.230510 ACACTACTATGGAAAACATGCTTTTGA 59.769 33.333 9.70 0.00 40.82 2.69
839 1132 8.081633 CACTACTATGGAAAACATGCTTTTGAA 58.918 33.333 9.70 1.27 40.82 2.69
840 1133 8.637986 ACTACTATGGAAAACATGCTTTTGAAA 58.362 29.630 9.70 0.00 40.82 2.69
841 1134 9.643693 CTACTATGGAAAACATGCTTTTGAAAT 57.356 29.630 9.70 5.00 40.82 2.17
842 1135 8.538409 ACTATGGAAAACATGCTTTTGAAATC 57.462 30.769 9.70 0.00 40.82 2.17
843 1136 6.806388 ATGGAAAACATGCTTTTGAAATCC 57.194 33.333 9.70 6.27 38.70 3.01
844 1137 5.678583 TGGAAAACATGCTTTTGAAATCCA 58.321 33.333 9.70 8.13 0.00 3.41
845 1138 5.526846 TGGAAAACATGCTTTTGAAATCCAC 59.473 36.000 9.70 0.00 0.00 4.02
846 1139 5.759763 GGAAAACATGCTTTTGAAATCCACT 59.240 36.000 9.70 0.00 0.00 4.00
847 1140 6.928492 GGAAAACATGCTTTTGAAATCCACTA 59.072 34.615 9.70 0.00 0.00 2.74
848 1141 7.603784 GGAAAACATGCTTTTGAAATCCACTAT 59.396 33.333 9.70 0.00 0.00 2.12
849 1142 8.538409 AAAACATGCTTTTGAAATCCACTATC 57.462 30.769 0.00 0.00 0.00 2.08
850 1143 7.472334 AACATGCTTTTGAAATCCACTATCT 57.528 32.000 0.00 0.00 0.00 1.98
851 1144 8.579850 AACATGCTTTTGAAATCCACTATCTA 57.420 30.769 0.00 0.00 0.00 1.98
852 1145 8.757982 ACATGCTTTTGAAATCCACTATCTAT 57.242 30.769 0.00 0.00 0.00 1.98
853 1146 8.844244 ACATGCTTTTGAAATCCACTATCTATC 58.156 33.333 0.00 0.00 0.00 2.08
854 1147 7.482654 TGCTTTTGAAATCCACTATCTATCG 57.517 36.000 0.00 0.00 0.00 2.92
855 1148 6.483307 TGCTTTTGAAATCCACTATCTATCGG 59.517 38.462 0.00 0.00 0.00 4.18
856 1149 6.566753 GCTTTTGAAATCCACTATCTATCGGC 60.567 42.308 0.00 0.00 0.00 5.54
857 1150 5.808366 TTGAAATCCACTATCTATCGGCT 57.192 39.130 0.00 0.00 0.00 5.52
858 1151 6.911250 TTGAAATCCACTATCTATCGGCTA 57.089 37.500 0.00 0.00 0.00 3.93
859 1152 6.268825 TGAAATCCACTATCTATCGGCTAC 57.731 41.667 0.00 0.00 0.00 3.58
860 1153 5.185249 TGAAATCCACTATCTATCGGCTACC 59.815 44.000 0.00 0.00 0.00 3.18
861 1154 4.594675 ATCCACTATCTATCGGCTACCT 57.405 45.455 0.00 0.00 0.00 3.08
862 1155 3.687125 TCCACTATCTATCGGCTACCTG 58.313 50.000 0.00 0.00 0.00 4.00
863 1156 2.755655 CCACTATCTATCGGCTACCTGG 59.244 54.545 0.00 0.00 0.00 4.45
864 1157 2.164624 CACTATCTATCGGCTACCTGGC 59.835 54.545 0.00 0.00 37.94 4.85
871 1164 4.301027 GGCTACCTGGCCGGATCG 62.301 72.222 15.09 0.00 42.82 3.69
872 1165 3.537874 GCTACCTGGCCGGATCGT 61.538 66.667 15.09 5.01 36.31 3.73
873 1166 2.198287 GCTACCTGGCCGGATCGTA 61.198 63.158 15.09 6.05 36.31 3.43
874 1167 1.741327 GCTACCTGGCCGGATCGTAA 61.741 60.000 15.09 0.00 36.31 3.18
875 1168 0.748450 CTACCTGGCCGGATCGTAAA 59.252 55.000 15.09 0.00 36.31 2.01
876 1169 1.137479 CTACCTGGCCGGATCGTAAAA 59.863 52.381 15.09 0.00 36.31 1.52
877 1170 0.325602 ACCTGGCCGGATCGTAAAAA 59.674 50.000 15.09 0.00 36.31 1.94
878 1171 0.730840 CCTGGCCGGATCGTAAAAAC 59.269 55.000 15.09 0.00 33.16 2.43
879 1172 1.444836 CTGGCCGGATCGTAAAAACA 58.555 50.000 5.28 0.00 0.00 2.83
880 1173 1.807742 CTGGCCGGATCGTAAAAACAA 59.192 47.619 5.28 0.00 0.00 2.83
881 1174 1.807742 TGGCCGGATCGTAAAAACAAG 59.192 47.619 5.05 0.00 0.00 3.16
882 1175 1.131693 GGCCGGATCGTAAAAACAAGG 59.868 52.381 5.05 0.00 0.00 3.61
883 1176 1.466866 GCCGGATCGTAAAAACAAGGC 60.467 52.381 5.05 0.00 35.00 4.35
884 1177 2.081462 CCGGATCGTAAAAACAAGGCT 58.919 47.619 0.00 0.00 0.00 4.58
885 1178 2.095372 CCGGATCGTAAAAACAAGGCTC 59.905 50.000 0.00 0.00 0.00 4.70
886 1179 3.000727 CGGATCGTAAAAACAAGGCTCT 58.999 45.455 0.00 0.00 0.00 4.09
887 1180 3.181520 CGGATCGTAAAAACAAGGCTCTG 60.182 47.826 0.00 0.00 0.00 3.35
888 1181 3.426292 GGATCGTAAAAACAAGGCTCTGC 60.426 47.826 0.00 0.00 0.00 4.26
889 1182 2.566913 TCGTAAAAACAAGGCTCTGCA 58.433 42.857 0.00 0.00 0.00 4.41
890 1183 2.289547 TCGTAAAAACAAGGCTCTGCAC 59.710 45.455 0.00 0.00 0.00 4.57
891 1184 2.650608 GTAAAAACAAGGCTCTGCACG 58.349 47.619 0.00 0.00 0.00 5.34
892 1185 1.388547 AAAAACAAGGCTCTGCACGA 58.611 45.000 0.00 0.00 0.00 4.35
893 1186 0.663153 AAAACAAGGCTCTGCACGAC 59.337 50.000 0.00 0.00 0.00 4.34
894 1187 0.179045 AAACAAGGCTCTGCACGACT 60.179 50.000 0.00 0.00 0.00 4.18
895 1188 0.601311 AACAAGGCTCTGCACGACTC 60.601 55.000 0.00 0.00 0.00 3.36
896 1189 1.739562 CAAGGCTCTGCACGACTCC 60.740 63.158 0.00 0.00 0.00 3.85
897 1190 3.288308 AAGGCTCTGCACGACTCCG 62.288 63.158 0.00 0.00 42.50 4.63
898 1191 3.749064 GGCTCTGCACGACTCCGA 61.749 66.667 0.00 0.00 39.50 4.55
899 1192 2.492090 GCTCTGCACGACTCCGAT 59.508 61.111 0.00 0.00 39.50 4.18
900 1193 1.587613 GCTCTGCACGACTCCGATC 60.588 63.158 0.00 0.00 39.50 3.69
908 1201 3.078804 CGACTCCGATCGTATGCAG 57.921 57.895 15.09 4.25 37.33 4.41
909 1202 0.586802 CGACTCCGATCGTATGCAGA 59.413 55.000 15.09 1.74 37.33 4.26
910 1203 1.399087 CGACTCCGATCGTATGCAGAG 60.399 57.143 15.09 13.95 37.33 3.35
911 1204 0.955178 ACTCCGATCGTATGCAGAGG 59.045 55.000 15.09 0.00 0.00 3.69
912 1205 1.239347 CTCCGATCGTATGCAGAGGA 58.761 55.000 15.09 6.15 0.00 3.71
913 1206 1.198867 CTCCGATCGTATGCAGAGGAG 59.801 57.143 15.09 4.65 37.95 3.69
914 1207 0.242286 CCGATCGTATGCAGAGGAGG 59.758 60.000 15.09 2.67 0.00 4.30
915 1208 0.242286 CGATCGTATGCAGAGGAGGG 59.758 60.000 7.03 0.34 0.00 4.30
916 1209 1.621992 GATCGTATGCAGAGGAGGGA 58.378 55.000 9.79 0.00 0.00 4.20
917 1210 2.175202 GATCGTATGCAGAGGAGGGAT 58.825 52.381 9.79 0.00 0.00 3.85
918 1211 2.088104 TCGTATGCAGAGGAGGGATT 57.912 50.000 0.00 0.00 0.00 3.01
919 1212 1.964223 TCGTATGCAGAGGAGGGATTC 59.036 52.381 0.00 0.00 0.00 2.52
920 1213 1.336332 CGTATGCAGAGGAGGGATTCG 60.336 57.143 0.00 0.00 0.00 3.34
921 1214 1.964223 GTATGCAGAGGAGGGATTCGA 59.036 52.381 0.00 0.00 0.00 3.71
922 1215 1.047002 ATGCAGAGGAGGGATTCGAG 58.953 55.000 0.00 0.00 0.00 4.04
923 1216 0.324738 TGCAGAGGAGGGATTCGAGT 60.325 55.000 0.00 0.00 0.00 4.18
924 1217 0.387565 GCAGAGGAGGGATTCGAGTC 59.612 60.000 0.00 0.00 0.00 3.36
925 1218 0.665835 CAGAGGAGGGATTCGAGTCG 59.334 60.000 6.09 6.09 0.00 4.18
926 1219 0.466555 AGAGGAGGGATTCGAGTCGG 60.467 60.000 13.54 0.00 0.00 4.79
927 1220 1.455959 AGGAGGGATTCGAGTCGGG 60.456 63.158 13.54 0.00 0.00 5.14
928 1221 2.499827 GGAGGGATTCGAGTCGGGG 61.500 68.421 13.54 0.00 0.00 5.73
929 1222 1.757340 GAGGGATTCGAGTCGGGGT 60.757 63.158 13.54 0.00 0.00 4.95
930 1223 1.736365 GAGGGATTCGAGTCGGGGTC 61.736 65.000 13.54 8.28 0.00 4.46
931 1224 2.794028 GGGATTCGAGTCGGGGTCC 61.794 68.421 13.54 16.20 0.00 4.46
932 1225 2.056223 GGATTCGAGTCGGGGTCCA 61.056 63.158 13.54 0.00 0.00 4.02
933 1226 1.610554 GGATTCGAGTCGGGGTCCAA 61.611 60.000 13.54 0.00 0.00 3.53
934 1227 0.459759 GATTCGAGTCGGGGTCCAAC 60.460 60.000 13.54 0.00 0.00 3.77
935 1228 1.189524 ATTCGAGTCGGGGTCCAACA 61.190 55.000 13.54 0.00 0.00 3.33
936 1229 2.048503 CGAGTCGGGGTCCAACAC 60.049 66.667 4.10 0.00 0.00 3.32
937 1230 2.048503 GAGTCGGGGTCCAACACG 60.049 66.667 0.00 0.00 0.00 4.49
938 1231 2.841044 AGTCGGGGTCCAACACGT 60.841 61.111 0.00 0.00 0.00 4.49
939 1232 1.526575 GAGTCGGGGTCCAACACGTA 61.527 60.000 0.00 0.00 0.00 3.57
940 1233 1.373371 GTCGGGGTCCAACACGTAC 60.373 63.158 0.00 0.00 0.00 3.67
941 1234 2.431260 CGGGGTCCAACACGTACG 60.431 66.667 15.01 15.01 0.00 3.67
942 1235 2.736531 GGGGTCCAACACGTACGT 59.263 61.111 16.72 16.72 0.00 3.57
943 1236 1.373371 GGGGTCCAACACGTACGTC 60.373 63.158 19.94 5.92 0.00 4.34
944 1237 1.373371 GGGTCCAACACGTACGTCC 60.373 63.158 19.94 15.23 0.00 4.79
945 1238 1.730547 GGTCCAACACGTACGTCCG 60.731 63.158 19.94 11.26 0.00 4.79
946 1239 1.730547 GTCCAACACGTACGTCCGG 60.731 63.158 19.94 18.28 0.00 5.14
947 1240 2.431260 CCAACACGTACGTCCGGG 60.431 66.667 19.94 15.53 37.25 5.73
948 1241 3.107661 CAACACGTACGTCCGGGC 61.108 66.667 19.94 0.00 33.59 6.13
949 1242 3.604667 AACACGTACGTCCGGGCA 61.605 61.111 19.94 0.00 33.59 5.36
950 1243 3.846602 AACACGTACGTCCGGGCAC 62.847 63.158 19.94 0.00 33.59 5.01
965 1258 3.752796 GCACGTATGCCTCCTAACA 57.247 52.632 0.00 0.00 46.97 2.41
966 1259 1.287425 GCACGTATGCCTCCTAACAC 58.713 55.000 0.00 0.00 46.97 3.32
967 1260 1.556564 CACGTATGCCTCCTAACACG 58.443 55.000 0.00 0.00 35.62 4.49
968 1261 0.179119 ACGTATGCCTCCTAACACGC 60.179 55.000 0.00 0.00 32.90 5.34
969 1262 0.102481 CGTATGCCTCCTAACACGCT 59.898 55.000 0.00 0.00 0.00 5.07
970 1263 1.470979 CGTATGCCTCCTAACACGCTT 60.471 52.381 0.00 0.00 0.00 4.68
971 1264 2.223641 CGTATGCCTCCTAACACGCTTA 60.224 50.000 0.00 0.00 0.00 3.09
972 1265 3.552273 CGTATGCCTCCTAACACGCTTAT 60.552 47.826 0.00 0.00 0.00 1.73
973 1266 3.560636 ATGCCTCCTAACACGCTTATT 57.439 42.857 0.00 0.00 0.00 1.40
974 1267 3.343941 TGCCTCCTAACACGCTTATTT 57.656 42.857 0.00 0.00 0.00 1.40
975 1268 4.475051 TGCCTCCTAACACGCTTATTTA 57.525 40.909 0.00 0.00 0.00 1.40
976 1269 4.834534 TGCCTCCTAACACGCTTATTTAA 58.165 39.130 0.00 0.00 0.00 1.52
977 1270 4.873827 TGCCTCCTAACACGCTTATTTAAG 59.126 41.667 0.00 0.00 36.40 1.85
978 1271 5.114081 GCCTCCTAACACGCTTATTTAAGA 58.886 41.667 1.52 0.00 35.33 2.10
979 1272 5.006455 GCCTCCTAACACGCTTATTTAAGAC 59.994 44.000 1.52 0.00 35.33 3.01
980 1273 5.522824 CCTCCTAACACGCTTATTTAAGACC 59.477 44.000 1.52 0.00 35.33 3.85
981 1274 6.040209 TCCTAACACGCTTATTTAAGACCA 57.960 37.500 1.52 0.00 35.33 4.02
982 1275 6.465948 TCCTAACACGCTTATTTAAGACCAA 58.534 36.000 1.52 0.00 35.33 3.67
983 1276 6.935771 TCCTAACACGCTTATTTAAGACCAAA 59.064 34.615 1.52 0.00 35.33 3.28
984 1277 7.444792 TCCTAACACGCTTATTTAAGACCAAAA 59.555 33.333 1.52 0.00 35.33 2.44
985 1278 8.077386 CCTAACACGCTTATTTAAGACCAAAAA 58.923 33.333 1.52 0.00 35.33 1.94
986 1279 7.924103 AACACGCTTATTTAAGACCAAAAAG 57.076 32.000 1.52 0.00 35.33 2.27
987 1280 5.918576 ACACGCTTATTTAAGACCAAAAAGC 59.081 36.000 1.52 0.00 35.33 3.51
988 1281 5.918011 CACGCTTATTTAAGACCAAAAAGCA 59.082 36.000 1.52 0.00 34.63 3.91
989 1282 5.918576 ACGCTTATTTAAGACCAAAAAGCAC 59.081 36.000 1.52 0.00 34.63 4.40
990 1283 5.059221 CGCTTATTTAAGACCAAAAAGCACG 59.941 40.000 1.52 0.00 34.63 5.34
991 1284 5.164090 GCTTATTTAAGACCAAAAAGCACGC 60.164 40.000 1.52 0.00 34.83 5.34
992 1285 3.784701 TTTAAGACCAAAAAGCACGCA 57.215 38.095 0.00 0.00 0.00 5.24
993 1286 2.766970 TAAGACCAAAAAGCACGCAC 57.233 45.000 0.00 0.00 0.00 5.34
994 1287 0.248458 AAGACCAAAAAGCACGCACG 60.248 50.000 0.00 0.00 0.00 5.34
995 1288 2.278531 ACCAAAAAGCACGCACGC 60.279 55.556 0.00 0.00 0.00 5.34
996 1289 2.278466 CCAAAAAGCACGCACGCA 60.278 55.556 0.00 0.00 0.00 5.24
997 1290 2.576002 CCAAAAAGCACGCACGCAC 61.576 57.895 0.00 0.00 0.00 5.34
998 1291 2.650602 AAAAAGCACGCACGCACG 60.651 55.556 0.00 0.00 39.50 5.34
1008 1301 3.334751 CACGCACGCACCTTCGAA 61.335 61.111 0.00 0.00 0.00 3.71
1009 1302 3.036084 ACGCACGCACCTTCGAAG 61.036 61.111 18.51 18.51 0.00 3.79
1010 1303 2.733218 CGCACGCACCTTCGAAGA 60.733 61.111 26.61 0.00 0.00 2.87
1011 1304 2.853914 GCACGCACCTTCGAAGAC 59.146 61.111 26.61 13.77 34.32 3.01
1012 1305 3.000080 GCACGCACCTTCGAAGACG 62.000 63.158 26.61 25.10 34.32 4.18
1013 1306 1.660575 CACGCACCTTCGAAGACGT 60.661 57.895 26.61 25.70 40.69 4.34
1014 1307 1.660575 ACGCACCTTCGAAGACGTG 60.661 57.895 27.94 25.42 39.31 4.49
1016 1309 4.655527 CACCTTCGAAGACGTGCT 57.344 55.556 26.61 0.00 40.69 4.40
1017 1310 2.900528 CACCTTCGAAGACGTGCTT 58.099 52.632 26.61 0.00 40.25 3.91
1018 1311 0.508641 CACCTTCGAAGACGTGCTTG 59.491 55.000 26.61 9.32 36.83 4.01
1019 1312 0.104304 ACCTTCGAAGACGTGCTTGT 59.896 50.000 26.61 9.97 36.83 3.16
1020 1313 1.217882 CCTTCGAAGACGTGCTTGTT 58.782 50.000 26.61 0.00 36.83 2.83
1021 1314 2.223876 ACCTTCGAAGACGTGCTTGTTA 60.224 45.455 26.61 0.00 36.83 2.41
1022 1315 2.798283 CCTTCGAAGACGTGCTTGTTAA 59.202 45.455 26.61 0.00 36.83 2.01
1023 1316 3.362693 CCTTCGAAGACGTGCTTGTTAAC 60.363 47.826 26.61 0.00 36.83 2.01
1024 1317 3.088194 TCGAAGACGTGCTTGTTAACT 57.912 42.857 7.22 0.00 36.83 2.24
1025 1318 3.047796 TCGAAGACGTGCTTGTTAACTC 58.952 45.455 7.22 0.00 36.83 3.01
1026 1319 2.160143 CGAAGACGTGCTTGTTAACTCG 60.160 50.000 7.22 6.65 36.83 4.18
1027 1320 2.503920 AGACGTGCTTGTTAACTCGT 57.496 45.000 7.22 9.49 0.00 4.18
1028 1321 2.124903 AGACGTGCTTGTTAACTCGTG 58.875 47.619 7.22 0.00 0.00 4.35
1029 1322 0.580104 ACGTGCTTGTTAACTCGTGC 59.420 50.000 7.22 6.48 0.00 5.34
1030 1323 0.579630 CGTGCTTGTTAACTCGTGCA 59.420 50.000 7.22 8.84 0.00 4.57
1031 1324 1.397190 CGTGCTTGTTAACTCGTGCAG 60.397 52.381 7.22 3.53 0.00 4.41
1032 1325 1.864711 GTGCTTGTTAACTCGTGCAGA 59.135 47.619 7.22 0.00 0.00 4.26
1041 1334 4.695560 TCGTGCAGAGTCGAGAGA 57.304 55.556 0.00 0.00 38.16 3.10
1042 1335 2.928416 TCGTGCAGAGTCGAGAGAA 58.072 52.632 0.00 0.00 45.01 2.87
1043 1336 0.799393 TCGTGCAGAGTCGAGAGAAG 59.201 55.000 0.00 0.00 45.01 2.85
1062 1355 2.823821 CGATCGATCGCAACGACG 59.176 61.111 32.34 9.59 43.84 5.12
1064 1357 1.831624 GATCGATCGCAACGACGAC 59.168 57.895 11.09 7.36 46.28 4.34
1068 1361 0.861866 CGATCGCAACGACGACATCT 60.862 55.000 0.26 0.00 46.28 2.90
1070 1363 1.774085 GATCGCAACGACGACATCTAC 59.226 52.381 0.00 0.00 46.28 2.59
1084 1377 0.467474 ATCTACAGGATCGACCGGCA 60.467 55.000 0.00 0.00 44.74 5.69
1098 1391 3.053291 GGCAACGCCGACATGGAA 61.053 61.111 0.00 0.00 39.62 3.53
1148 1441 2.875485 CCTCGTCATCGACCACGT 59.125 61.111 15.47 0.00 41.35 4.49
1180 1473 1.078143 GAGCCCTGCACAACCCTAG 60.078 63.158 0.00 0.00 0.00 3.02
1226 1522 4.656117 ACACCACGCATGCGACGA 62.656 61.111 43.72 0.00 42.83 4.20
1234 1530 3.770040 CATGCGACGACCCTGGGA 61.770 66.667 22.23 0.00 0.00 4.37
1235 1531 3.461773 ATGCGACGACCCTGGGAG 61.462 66.667 22.23 15.27 0.00 4.30
1278 4112 3.697747 CCGCACGGGTGGGTTCTA 61.698 66.667 10.18 0.00 41.16 2.10
1319 4153 3.488423 CACCTTCCTGTGGAGCCT 58.512 61.111 0.00 0.00 31.21 4.58
1329 4163 0.471780 TGTGGAGCCTTCAGACCTCA 60.472 55.000 0.00 0.00 0.00 3.86
1376 4210 0.605589 CCGGAGCAGGAGATACCATC 59.394 60.000 0.00 0.00 42.04 3.51
1417 4254 4.338710 GCAAGCCCACCACCGGTA 62.339 66.667 6.87 0.00 32.11 4.02
1418 4255 2.432563 CAAGCCCACCACCGGTAA 59.567 61.111 6.87 0.00 32.11 2.85
1737 4583 4.101448 ACCACCTCCATGGCGCTC 62.101 66.667 6.96 0.00 44.33 5.03
1740 4820 3.474570 ACCTCCATGGCGCTCTCC 61.475 66.667 6.96 0.00 40.22 3.71
1773 4853 2.496817 GGCGAGCTCTACCTGGTG 59.503 66.667 12.85 0.00 0.00 4.17
1797 4877 2.076863 GCCTTCTTGCACTACGACATT 58.923 47.619 0.00 0.00 0.00 2.71
1843 4923 2.257371 GCGTGTACGAGCTGGACA 59.743 61.111 8.82 0.00 43.02 4.02
1870 4950 2.456287 GAAGAGGTGGCGCAAGGTCT 62.456 60.000 10.83 0.00 38.28 3.85
2005 5085 1.004440 AACCTGCTGCGAGTCTTCC 60.004 57.895 0.00 0.00 0.00 3.46
2006 5086 2.125350 CCTGCTGCGAGTCTTCCC 60.125 66.667 0.00 0.00 0.00 3.97
2061 5144 4.753610 CACGATCCATGCAAAGATATCACT 59.246 41.667 5.32 0.00 0.00 3.41
2071 5154 4.584325 GCAAAGATATCACTGGGCCAAATA 59.416 41.667 8.04 6.54 0.00 1.40
2109 5192 5.735285 TGCTTCCTAGTGATGATCCATAG 57.265 43.478 0.00 0.00 0.00 2.23
2159 5250 4.961438 ACTGAAGGAATTGGTTGCAATT 57.039 36.364 0.59 0.00 37.47 2.32
2161 5252 5.683681 ACTGAAGGAATTGGTTGCAATTTT 58.316 33.333 0.59 0.00 35.18 1.82
2162 5253 5.759763 ACTGAAGGAATTGGTTGCAATTTTC 59.240 36.000 0.59 3.92 35.18 2.29
2167 5258 7.967890 AGGAATTGGTTGCAATTTTCTTTAG 57.032 32.000 0.59 0.00 35.18 1.85
2168 5259 7.508687 AGGAATTGGTTGCAATTTTCTTTAGT 58.491 30.769 0.59 0.00 35.18 2.24
2171 5262 7.951530 ATTGGTTGCAATTTTCTTTAGTGAG 57.048 32.000 0.59 0.00 0.00 3.51
2173 5264 5.362430 TGGTTGCAATTTTCTTTAGTGAGGT 59.638 36.000 0.59 0.00 0.00 3.85
2176 5267 7.279981 GGTTGCAATTTTCTTTAGTGAGGTTTT 59.720 33.333 0.59 0.00 0.00 2.43
2194 5285 6.924111 AGGTTTTGATTGTATGGACATGAAC 58.076 36.000 0.00 0.00 34.86 3.18
2195 5286 6.721208 AGGTTTTGATTGTATGGACATGAACT 59.279 34.615 0.00 0.00 34.86 3.01
2196 5287 7.888021 AGGTTTTGATTGTATGGACATGAACTA 59.112 33.333 0.00 0.00 34.86 2.24
2281 5373 9.788889 ATATTTGCAAGATATTCTGTGATGAGA 57.211 29.630 0.00 0.00 0.00 3.27
2282 5374 8.693120 ATTTGCAAGATATTCTGTGATGAGAT 57.307 30.769 0.00 0.00 0.00 2.75
2283 5375 7.725818 TTGCAAGATATTCTGTGATGAGATC 57.274 36.000 0.00 0.00 0.00 2.75
2284 5376 6.823497 TGCAAGATATTCTGTGATGAGATCA 58.177 36.000 0.00 0.00 36.84 2.92
2285 5377 7.277396 TGCAAGATATTCTGTGATGAGATCAA 58.723 34.615 0.00 0.00 41.69 2.57
2286 5378 7.937394 TGCAAGATATTCTGTGATGAGATCAAT 59.063 33.333 0.00 0.00 41.69 2.57
2287 5379 9.433153 GCAAGATATTCTGTGATGAGATCAATA 57.567 33.333 0.00 0.00 41.69 1.90
2313 5405 9.793259 ATAATAGTCAGACTTGAACCTTGAAAA 57.207 29.630 8.80 0.00 34.49 2.29
2314 5406 8.697507 AATAGTCAGACTTGAACCTTGAAAAT 57.302 30.769 8.80 0.00 34.49 1.82
2315 5407 9.793259 AATAGTCAGACTTGAACCTTGAAAATA 57.207 29.630 8.80 0.00 34.49 1.40
2316 5408 9.793259 ATAGTCAGACTTGAACCTTGAAAATAA 57.207 29.630 8.80 0.00 34.49 1.40
2317 5409 8.519799 AGTCAGACTTGAACCTTGAAAATAAA 57.480 30.769 0.00 0.00 34.49 1.40
2318 5410 8.406297 AGTCAGACTTGAACCTTGAAAATAAAC 58.594 33.333 0.00 0.00 34.49 2.01
2319 5411 8.188139 GTCAGACTTGAACCTTGAAAATAAACA 58.812 33.333 0.00 0.00 34.49 2.83
2320 5412 8.405531 TCAGACTTGAACCTTGAAAATAAACAG 58.594 33.333 0.00 0.00 0.00 3.16
2321 5413 8.405531 CAGACTTGAACCTTGAAAATAAACAGA 58.594 33.333 0.00 0.00 0.00 3.41
2322 5414 8.966868 AGACTTGAACCTTGAAAATAAACAGAA 58.033 29.630 0.00 0.00 0.00 3.02
2323 5415 9.750125 GACTTGAACCTTGAAAATAAACAGAAT 57.250 29.630 0.00 0.00 0.00 2.40
2328 5420 9.543018 GAACCTTGAAAATAAACAGAATACTCG 57.457 33.333 0.00 0.00 0.00 4.18
2329 5421 8.842358 ACCTTGAAAATAAACAGAATACTCGA 57.158 30.769 0.00 0.00 0.00 4.04
2330 5422 9.280174 ACCTTGAAAATAAACAGAATACTCGAA 57.720 29.630 0.00 0.00 0.00 3.71
2338 5430 6.555812 AAACAGAATACTCGAAAAAGGACC 57.444 37.500 0.00 0.00 0.00 4.46
2339 5431 5.223449 ACAGAATACTCGAAAAAGGACCA 57.777 39.130 0.00 0.00 0.00 4.02
2340 5432 5.617252 ACAGAATACTCGAAAAAGGACCAA 58.383 37.500 0.00 0.00 0.00 3.67
2341 5433 5.469084 ACAGAATACTCGAAAAAGGACCAAC 59.531 40.000 0.00 0.00 0.00 3.77
2342 5434 5.468746 CAGAATACTCGAAAAAGGACCAACA 59.531 40.000 0.00 0.00 0.00 3.33
2343 5435 5.701290 AGAATACTCGAAAAAGGACCAACAG 59.299 40.000 0.00 0.00 0.00 3.16
2344 5436 3.553828 ACTCGAAAAAGGACCAACAGA 57.446 42.857 0.00 0.00 0.00 3.41
2345 5437 3.881220 ACTCGAAAAAGGACCAACAGAA 58.119 40.909 0.00 0.00 0.00 3.02
2346 5438 4.461198 ACTCGAAAAAGGACCAACAGAAT 58.539 39.130 0.00 0.00 0.00 2.40
2347 5439 4.515567 ACTCGAAAAAGGACCAACAGAATC 59.484 41.667 0.00 0.00 0.00 2.52
2348 5440 4.456535 TCGAAAAAGGACCAACAGAATCA 58.543 39.130 0.00 0.00 0.00 2.57
2349 5441 4.884744 TCGAAAAAGGACCAACAGAATCAA 59.115 37.500 0.00 0.00 0.00 2.57
2350 5442 5.358442 TCGAAAAAGGACCAACAGAATCAAA 59.642 36.000 0.00 0.00 0.00 2.69
2351 5443 6.039616 CGAAAAAGGACCAACAGAATCAAAA 58.960 36.000 0.00 0.00 0.00 2.44
2352 5444 6.701400 CGAAAAAGGACCAACAGAATCAAAAT 59.299 34.615 0.00 0.00 0.00 1.82
2353 5445 7.865385 CGAAAAAGGACCAACAGAATCAAAATA 59.135 33.333 0.00 0.00 0.00 1.40
2354 5446 9.196552 GAAAAAGGACCAACAGAATCAAAATAG 57.803 33.333 0.00 0.00 0.00 1.73
2355 5447 5.904362 AGGACCAACAGAATCAAAATAGC 57.096 39.130 0.00 0.00 0.00 2.97
2356 5448 5.574188 AGGACCAACAGAATCAAAATAGCT 58.426 37.500 0.00 0.00 0.00 3.32
2357 5449 5.416952 AGGACCAACAGAATCAAAATAGCTG 59.583 40.000 0.00 0.00 0.00 4.24
2358 5450 5.415701 GGACCAACAGAATCAAAATAGCTGA 59.584 40.000 0.00 0.00 0.00 4.26
2359 5451 6.071952 GGACCAACAGAATCAAAATAGCTGAA 60.072 38.462 0.00 0.00 0.00 3.02
2360 5452 6.917533 ACCAACAGAATCAAAATAGCTGAAG 58.082 36.000 0.00 0.00 0.00 3.02
2361 5453 6.716628 ACCAACAGAATCAAAATAGCTGAAGA 59.283 34.615 0.00 0.00 0.00 2.87
2362 5454 7.231317 ACCAACAGAATCAAAATAGCTGAAGAA 59.769 33.333 0.00 0.00 0.00 2.52
2363 5455 7.540055 CCAACAGAATCAAAATAGCTGAAGAAC 59.460 37.037 0.00 0.00 0.00 3.01
2364 5456 7.150783 ACAGAATCAAAATAGCTGAAGAACC 57.849 36.000 0.00 0.00 0.00 3.62
2365 5457 6.716628 ACAGAATCAAAATAGCTGAAGAACCA 59.283 34.615 0.00 0.00 0.00 3.67
2366 5458 7.025963 CAGAATCAAAATAGCTGAAGAACCAC 58.974 38.462 0.00 0.00 0.00 4.16
2367 5459 6.716628 AGAATCAAAATAGCTGAAGAACCACA 59.283 34.615 0.00 0.00 0.00 4.17
2368 5460 6.899393 ATCAAAATAGCTGAAGAACCACAA 57.101 33.333 0.00 0.00 0.00 3.33
2369 5461 6.707440 TCAAAATAGCTGAAGAACCACAAA 57.293 33.333 0.00 0.00 0.00 2.83
2370 5462 7.288810 TCAAAATAGCTGAAGAACCACAAAT 57.711 32.000 0.00 0.00 0.00 2.32
2371 5463 8.402798 TCAAAATAGCTGAAGAACCACAAATA 57.597 30.769 0.00 0.00 0.00 1.40
2372 5464 9.023962 TCAAAATAGCTGAAGAACCACAAATAT 57.976 29.630 0.00 0.00 0.00 1.28
2593 5687 4.789095 TTCGTCTGTTTGTCTTAGTTGC 57.211 40.909 0.00 0.00 0.00 4.17
2594 5688 3.787785 TCGTCTGTTTGTCTTAGTTGCA 58.212 40.909 0.00 0.00 0.00 4.08
2725 5835 7.100458 ACAAAATTCATTTCCCTATCCTTCG 57.900 36.000 0.00 0.00 0.00 3.79
2797 5907 7.513371 TTTTCCGCTCCTATTTTTCTTTGTA 57.487 32.000 0.00 0.00 0.00 2.41
3011 6123 4.253685 GTCTACTTATTGGTCTGCTTGCA 58.746 43.478 0.00 0.00 0.00 4.08
3041 6153 6.853872 CGTCTTTTATTGGAACATTTTCACGA 59.146 34.615 0.00 0.00 39.30 4.35
3047 6159 1.577221 GAACATTTTCACGACGCGAC 58.423 50.000 15.93 5.54 0.00 5.19
3301 6436 5.482175 GGAGGGCTACATGTCTATGTATTCT 59.518 44.000 0.00 0.68 45.90 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
268 350 3.642778 TTACTCCCAGCAGCGCGTC 62.643 63.158 8.43 0.00 0.00 5.19
330 490 1.520787 CAACCACCGGCCGAGTATC 60.521 63.158 30.73 0.00 0.00 2.24
726 1011 1.607801 CGGTGGCCATCAGAGAGTGA 61.608 60.000 18.15 0.00 40.38 3.41
727 1012 1.153489 CGGTGGCCATCAGAGAGTG 60.153 63.158 18.15 0.00 0.00 3.51
729 1014 1.142748 GTCGGTGGCCATCAGAGAG 59.857 63.158 18.15 0.00 0.00 3.20
730 1015 0.977627 ATGTCGGTGGCCATCAGAGA 60.978 55.000 18.15 13.07 0.00 3.10
732 1017 0.752658 CTATGTCGGTGGCCATCAGA 59.247 55.000 18.15 11.61 0.00 3.27
733 1018 0.882042 GCTATGTCGGTGGCCATCAG 60.882 60.000 18.15 9.21 0.00 2.90
735 1020 0.250467 ATGCTATGTCGGTGGCCATC 60.250 55.000 9.72 7.61 0.00 3.51
803 1096 3.343617 TCCATAGTAGTGTGCCTTTTGC 58.656 45.455 0.00 0.00 41.77 3.68
804 1097 5.957842 TTTCCATAGTAGTGTGCCTTTTG 57.042 39.130 0.00 0.00 0.00 2.44
805 1098 5.830991 TGTTTTCCATAGTAGTGTGCCTTTT 59.169 36.000 0.00 0.00 0.00 2.27
806 1099 5.381757 TGTTTTCCATAGTAGTGTGCCTTT 58.618 37.500 0.00 0.00 0.00 3.11
807 1100 4.980573 TGTTTTCCATAGTAGTGTGCCTT 58.019 39.130 0.00 0.00 0.00 4.35
808 1101 4.634012 TGTTTTCCATAGTAGTGTGCCT 57.366 40.909 0.00 0.00 0.00 4.75
809 1102 4.438744 GCATGTTTTCCATAGTAGTGTGCC 60.439 45.833 0.00 0.00 30.71 5.01
810 1103 4.396166 AGCATGTTTTCCATAGTAGTGTGC 59.604 41.667 0.00 0.00 30.71 4.57
811 1104 6.500684 AAGCATGTTTTCCATAGTAGTGTG 57.499 37.500 0.00 0.00 30.71 3.82
812 1105 7.230510 TCAAAAGCATGTTTTCCATAGTAGTGT 59.769 33.333 8.06 0.00 30.71 3.55
813 1106 7.592938 TCAAAAGCATGTTTTCCATAGTAGTG 58.407 34.615 8.06 0.25 30.71 2.74
814 1107 7.759489 TCAAAAGCATGTTTTCCATAGTAGT 57.241 32.000 8.06 0.00 30.71 2.73
815 1108 9.643693 ATTTCAAAAGCATGTTTTCCATAGTAG 57.356 29.630 8.06 0.00 30.71 2.57
816 1109 9.638239 GATTTCAAAAGCATGTTTTCCATAGTA 57.362 29.630 8.06 0.00 30.71 1.82
817 1110 7.603784 GGATTTCAAAAGCATGTTTTCCATAGT 59.396 33.333 8.06 0.00 30.71 2.12
818 1111 7.603404 TGGATTTCAAAAGCATGTTTTCCATAG 59.397 33.333 8.06 0.00 30.71 2.23
819 1112 7.387397 GTGGATTTCAAAAGCATGTTTTCCATA 59.613 33.333 12.47 0.18 30.71 2.74
820 1113 6.205270 GTGGATTTCAAAAGCATGTTTTCCAT 59.795 34.615 12.47 2.47 0.00 3.41
821 1114 5.526846 GTGGATTTCAAAAGCATGTTTTCCA 59.473 36.000 8.06 7.43 0.00 3.53
822 1115 5.759763 AGTGGATTTCAAAAGCATGTTTTCC 59.240 36.000 8.06 4.90 0.00 3.13
823 1116 6.849588 AGTGGATTTCAAAAGCATGTTTTC 57.150 33.333 8.06 0.00 0.00 2.29
824 1117 8.370182 AGATAGTGGATTTCAAAAGCATGTTTT 58.630 29.630 1.14 1.14 0.00 2.43
825 1118 7.899973 AGATAGTGGATTTCAAAAGCATGTTT 58.100 30.769 0.00 0.00 0.00 2.83
826 1119 7.472334 AGATAGTGGATTTCAAAAGCATGTT 57.528 32.000 0.00 0.00 0.00 2.71
827 1120 8.757982 ATAGATAGTGGATTTCAAAAGCATGT 57.242 30.769 0.00 0.00 0.00 3.21
828 1121 8.013947 CGATAGATAGTGGATTTCAAAAGCATG 58.986 37.037 0.00 0.00 39.76 4.06
829 1122 7.173907 CCGATAGATAGTGGATTTCAAAAGCAT 59.826 37.037 0.00 0.00 39.76 3.79
830 1123 6.483307 CCGATAGATAGTGGATTTCAAAAGCA 59.517 38.462 0.00 0.00 39.76 3.91
831 1124 6.566753 GCCGATAGATAGTGGATTTCAAAAGC 60.567 42.308 0.00 0.00 39.76 3.51
832 1125 6.708054 AGCCGATAGATAGTGGATTTCAAAAG 59.292 38.462 0.00 0.00 39.76 2.27
833 1126 6.591935 AGCCGATAGATAGTGGATTTCAAAA 58.408 36.000 0.00 0.00 39.76 2.44
834 1127 6.174720 AGCCGATAGATAGTGGATTTCAAA 57.825 37.500 0.00 0.00 39.76 2.69
835 1128 5.808366 AGCCGATAGATAGTGGATTTCAA 57.192 39.130 0.00 0.00 39.76 2.69
836 1129 5.185249 GGTAGCCGATAGATAGTGGATTTCA 59.815 44.000 0.00 0.00 39.76 2.69
837 1130 5.419471 AGGTAGCCGATAGATAGTGGATTTC 59.581 44.000 0.00 0.00 39.76 2.17
838 1131 5.186021 CAGGTAGCCGATAGATAGTGGATTT 59.814 44.000 0.00 0.00 39.76 2.17
839 1132 4.707448 CAGGTAGCCGATAGATAGTGGATT 59.293 45.833 0.00 0.00 39.76 3.01
840 1133 4.274147 CAGGTAGCCGATAGATAGTGGAT 58.726 47.826 0.00 0.00 39.76 3.41
841 1134 3.561528 CCAGGTAGCCGATAGATAGTGGA 60.562 52.174 0.00 0.00 39.76 4.02
842 1135 2.755655 CCAGGTAGCCGATAGATAGTGG 59.244 54.545 0.00 0.00 39.76 4.00
843 1136 2.164624 GCCAGGTAGCCGATAGATAGTG 59.835 54.545 0.00 0.00 39.76 2.74
844 1137 2.448453 GCCAGGTAGCCGATAGATAGT 58.552 52.381 0.00 0.00 39.76 2.12
845 1138 1.751924 GGCCAGGTAGCCGATAGATAG 59.248 57.143 0.00 0.00 44.57 2.08
846 1139 1.848652 GGCCAGGTAGCCGATAGATA 58.151 55.000 0.00 0.00 44.57 1.98
847 1140 2.672414 GGCCAGGTAGCCGATAGAT 58.328 57.895 0.00 0.00 44.57 1.98
848 1141 4.192950 GGCCAGGTAGCCGATAGA 57.807 61.111 0.00 0.00 44.57 1.98
855 1148 1.741327 TTACGATCCGGCCAGGTAGC 61.741 60.000 2.24 0.00 41.99 3.58
856 1149 0.748450 TTTACGATCCGGCCAGGTAG 59.252 55.000 2.24 0.00 41.99 3.18
857 1150 1.193323 TTTTACGATCCGGCCAGGTA 58.807 50.000 2.24 0.00 41.99 3.08
858 1151 0.325602 TTTTTACGATCCGGCCAGGT 59.674 50.000 2.24 0.00 41.99 4.00
859 1152 0.730840 GTTTTTACGATCCGGCCAGG 59.269 55.000 2.24 5.27 42.97 4.45
860 1153 1.444836 TGTTTTTACGATCCGGCCAG 58.555 50.000 2.24 0.00 0.00 4.85
861 1154 1.807742 CTTGTTTTTACGATCCGGCCA 59.192 47.619 2.24 0.00 0.00 5.36
862 1155 1.131693 CCTTGTTTTTACGATCCGGCC 59.868 52.381 0.00 0.00 0.00 6.13
863 1156 1.466866 GCCTTGTTTTTACGATCCGGC 60.467 52.381 0.00 0.00 0.00 6.13
864 1157 2.081462 AGCCTTGTTTTTACGATCCGG 58.919 47.619 0.00 0.00 0.00 5.14
865 1158 3.000727 AGAGCCTTGTTTTTACGATCCG 58.999 45.455 0.00 0.00 0.00 4.18
866 1159 3.426292 GCAGAGCCTTGTTTTTACGATCC 60.426 47.826 0.00 0.00 0.00 3.36
867 1160 3.188460 TGCAGAGCCTTGTTTTTACGATC 59.812 43.478 0.00 0.00 0.00 3.69
868 1161 3.058224 GTGCAGAGCCTTGTTTTTACGAT 60.058 43.478 0.00 0.00 0.00 3.73
869 1162 2.289547 GTGCAGAGCCTTGTTTTTACGA 59.710 45.455 0.00 0.00 0.00 3.43
870 1163 2.650608 GTGCAGAGCCTTGTTTTTACG 58.349 47.619 0.00 0.00 0.00 3.18
871 1164 2.289547 TCGTGCAGAGCCTTGTTTTTAC 59.710 45.455 0.00 0.00 0.00 2.01
872 1165 2.289547 GTCGTGCAGAGCCTTGTTTTTA 59.710 45.455 0.00 0.00 0.00 1.52
873 1166 1.065551 GTCGTGCAGAGCCTTGTTTTT 59.934 47.619 0.00 0.00 0.00 1.94
874 1167 0.663153 GTCGTGCAGAGCCTTGTTTT 59.337 50.000 0.00 0.00 0.00 2.43
875 1168 0.179045 AGTCGTGCAGAGCCTTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
876 1169 0.601311 GAGTCGTGCAGAGCCTTGTT 60.601 55.000 0.00 0.00 0.00 2.83
877 1170 1.005630 GAGTCGTGCAGAGCCTTGT 60.006 57.895 0.00 0.00 0.00 3.16
878 1171 1.739562 GGAGTCGTGCAGAGCCTTG 60.740 63.158 0.00 0.00 0.00 3.61
879 1172 2.659610 GGAGTCGTGCAGAGCCTT 59.340 61.111 0.00 0.00 0.00 4.35
880 1173 3.753434 CGGAGTCGTGCAGAGCCT 61.753 66.667 0.00 0.00 0.00 4.58
881 1174 2.945398 GATCGGAGTCGTGCAGAGCC 62.945 65.000 0.00 0.00 37.69 4.70
882 1175 1.587613 GATCGGAGTCGTGCAGAGC 60.588 63.158 0.00 0.00 37.69 4.09
883 1176 1.297967 CGATCGGAGTCGTGCAGAG 60.298 63.158 7.38 0.00 36.88 3.35
884 1177 2.791927 CGATCGGAGTCGTGCAGA 59.208 61.111 7.38 0.00 36.88 4.26
890 1183 0.586802 TCTGCATACGATCGGAGTCG 59.413 55.000 20.98 4.90 46.56 4.18
891 1184 1.068885 CCTCTGCATACGATCGGAGTC 60.069 57.143 20.98 7.37 34.67 3.36
892 1185 0.955178 CCTCTGCATACGATCGGAGT 59.045 55.000 20.98 0.30 34.67 3.85
893 1186 1.198867 CTCCTCTGCATACGATCGGAG 59.801 57.143 20.98 14.13 35.90 4.63
894 1187 1.239347 CTCCTCTGCATACGATCGGA 58.761 55.000 20.98 12.40 0.00 4.55
895 1188 0.242286 CCTCCTCTGCATACGATCGG 59.758 60.000 20.98 2.45 0.00 4.18
896 1189 0.242286 CCCTCCTCTGCATACGATCG 59.758 60.000 14.88 14.88 0.00 3.69
897 1190 1.621992 TCCCTCCTCTGCATACGATC 58.378 55.000 0.00 0.00 0.00 3.69
898 1191 2.317371 ATCCCTCCTCTGCATACGAT 57.683 50.000 0.00 0.00 0.00 3.73
899 1192 1.964223 GAATCCCTCCTCTGCATACGA 59.036 52.381 0.00 0.00 0.00 3.43
900 1193 1.336332 CGAATCCCTCCTCTGCATACG 60.336 57.143 0.00 0.00 0.00 3.06
901 1194 1.964223 TCGAATCCCTCCTCTGCATAC 59.036 52.381 0.00 0.00 0.00 2.39
902 1195 2.242926 CTCGAATCCCTCCTCTGCATA 58.757 52.381 0.00 0.00 0.00 3.14
903 1196 1.047002 CTCGAATCCCTCCTCTGCAT 58.953 55.000 0.00 0.00 0.00 3.96
904 1197 0.324738 ACTCGAATCCCTCCTCTGCA 60.325 55.000 0.00 0.00 0.00 4.41
905 1198 0.387565 GACTCGAATCCCTCCTCTGC 59.612 60.000 0.00 0.00 0.00 4.26
906 1199 0.665835 CGACTCGAATCCCTCCTCTG 59.334 60.000 0.00 0.00 0.00 3.35
907 1200 0.466555 CCGACTCGAATCCCTCCTCT 60.467 60.000 0.00 0.00 0.00 3.69
908 1201 1.457009 CCCGACTCGAATCCCTCCTC 61.457 65.000 0.00 0.00 0.00 3.71
909 1202 1.455959 CCCGACTCGAATCCCTCCT 60.456 63.158 0.00 0.00 0.00 3.69
910 1203 2.499827 CCCCGACTCGAATCCCTCC 61.500 68.421 0.00 0.00 0.00 4.30
911 1204 1.736365 GACCCCGACTCGAATCCCTC 61.736 65.000 0.00 0.00 0.00 4.30
912 1205 1.757340 GACCCCGACTCGAATCCCT 60.757 63.158 0.00 0.00 0.00 4.20
913 1206 2.794028 GGACCCCGACTCGAATCCC 61.794 68.421 0.00 0.00 0.00 3.85
914 1207 1.610554 TTGGACCCCGACTCGAATCC 61.611 60.000 0.00 4.53 0.00 3.01
915 1208 0.459759 GTTGGACCCCGACTCGAATC 60.460 60.000 0.00 0.00 35.15 2.52
916 1209 1.189524 TGTTGGACCCCGACTCGAAT 61.190 55.000 0.00 0.00 38.66 3.34
917 1210 1.833492 TGTTGGACCCCGACTCGAA 60.833 57.895 0.00 0.00 38.66 3.71
918 1211 2.203523 TGTTGGACCCCGACTCGA 60.204 61.111 0.00 0.00 38.66 4.04
919 1212 2.048503 GTGTTGGACCCCGACTCG 60.049 66.667 5.11 0.00 38.66 4.18
920 1213 1.526575 TACGTGTTGGACCCCGACTC 61.527 60.000 0.00 1.01 38.66 3.36
921 1214 1.531365 TACGTGTTGGACCCCGACT 60.531 57.895 0.00 0.00 38.66 4.18
922 1215 1.373371 GTACGTGTTGGACCCCGAC 60.373 63.158 0.00 0.00 38.36 4.79
923 1216 2.918345 CGTACGTGTTGGACCCCGA 61.918 63.158 7.22 0.00 0.00 5.14
924 1217 2.431260 CGTACGTGTTGGACCCCG 60.431 66.667 7.22 0.00 0.00 5.73
925 1218 1.373371 GACGTACGTGTTGGACCCC 60.373 63.158 28.16 3.68 0.00 4.95
926 1219 1.373371 GGACGTACGTGTTGGACCC 60.373 63.158 28.16 14.95 0.00 4.46
927 1220 1.730547 CGGACGTACGTGTTGGACC 60.731 63.158 28.16 18.01 0.00 4.46
928 1221 1.730547 CCGGACGTACGTGTTGGAC 60.731 63.158 28.16 9.95 0.00 4.02
929 1222 2.644418 CCGGACGTACGTGTTGGA 59.356 61.111 28.16 0.00 0.00 3.53
930 1223 2.431260 CCCGGACGTACGTGTTGG 60.431 66.667 28.16 22.20 0.00 3.77
931 1224 3.107661 GCCCGGACGTACGTGTTG 61.108 66.667 28.16 14.46 0.00 3.33
932 1225 3.604667 TGCCCGGACGTACGTGTT 61.605 61.111 28.16 0.00 0.00 3.32
933 1226 4.347453 GTGCCCGGACGTACGTGT 62.347 66.667 28.16 0.55 0.00 4.49
948 1241 1.556564 CGTGTTAGGAGGCATACGTG 58.443 55.000 0.00 0.00 0.00 4.49
949 1242 0.179119 GCGTGTTAGGAGGCATACGT 60.179 55.000 0.00 0.00 34.37 3.57
950 1243 0.102481 AGCGTGTTAGGAGGCATACG 59.898 55.000 0.00 0.00 34.93 3.06
951 1244 2.311124 AAGCGTGTTAGGAGGCATAC 57.689 50.000 0.00 0.00 0.00 2.39
952 1245 4.682778 AATAAGCGTGTTAGGAGGCATA 57.317 40.909 0.00 0.00 0.00 3.14
953 1246 3.560636 AATAAGCGTGTTAGGAGGCAT 57.439 42.857 0.00 0.00 0.00 4.40
954 1247 3.343941 AAATAAGCGTGTTAGGAGGCA 57.656 42.857 0.00 0.00 0.00 4.75
955 1248 5.006455 GTCTTAAATAAGCGTGTTAGGAGGC 59.994 44.000 0.00 0.00 33.40 4.70
956 1249 5.522824 GGTCTTAAATAAGCGTGTTAGGAGG 59.477 44.000 0.00 0.00 33.40 4.30
957 1250 6.103997 TGGTCTTAAATAAGCGTGTTAGGAG 58.896 40.000 0.00 0.00 33.40 3.69
958 1251 6.040209 TGGTCTTAAATAAGCGTGTTAGGA 57.960 37.500 0.00 0.00 33.40 2.94
959 1252 6.730960 TTGGTCTTAAATAAGCGTGTTAGG 57.269 37.500 0.00 0.00 33.40 2.69
960 1253 9.113876 CTTTTTGGTCTTAAATAAGCGTGTTAG 57.886 33.333 0.00 0.00 33.40 2.34
961 1254 7.592164 GCTTTTTGGTCTTAAATAAGCGTGTTA 59.408 33.333 0.00 0.00 33.40 2.41
962 1255 6.419710 GCTTTTTGGTCTTAAATAAGCGTGTT 59.580 34.615 0.00 0.00 33.40 3.32
963 1256 5.918576 GCTTTTTGGTCTTAAATAAGCGTGT 59.081 36.000 0.00 0.00 33.40 4.49
964 1257 5.918011 TGCTTTTTGGTCTTAAATAAGCGTG 59.082 36.000 0.00 0.00 36.98 5.34
965 1258 5.918576 GTGCTTTTTGGTCTTAAATAAGCGT 59.081 36.000 0.00 0.00 36.98 5.07
966 1259 5.059221 CGTGCTTTTTGGTCTTAAATAAGCG 59.941 40.000 0.00 0.00 36.98 4.68
967 1260 5.164090 GCGTGCTTTTTGGTCTTAAATAAGC 60.164 40.000 0.00 0.00 36.00 3.09
968 1261 5.918011 TGCGTGCTTTTTGGTCTTAAATAAG 59.082 36.000 0.00 0.00 34.65 1.73
969 1262 5.688176 GTGCGTGCTTTTTGGTCTTAAATAA 59.312 36.000 0.00 0.00 0.00 1.40
970 1263 5.216648 GTGCGTGCTTTTTGGTCTTAAATA 58.783 37.500 0.00 0.00 0.00 1.40
971 1264 4.048504 GTGCGTGCTTTTTGGTCTTAAAT 58.951 39.130 0.00 0.00 0.00 1.40
972 1265 3.440228 GTGCGTGCTTTTTGGTCTTAAA 58.560 40.909 0.00 0.00 0.00 1.52
973 1266 2.539953 CGTGCGTGCTTTTTGGTCTTAA 60.540 45.455 0.00 0.00 0.00 1.85
974 1267 1.003331 CGTGCGTGCTTTTTGGTCTTA 60.003 47.619 0.00 0.00 0.00 2.10
975 1268 0.248458 CGTGCGTGCTTTTTGGTCTT 60.248 50.000 0.00 0.00 0.00 3.01
976 1269 1.355210 CGTGCGTGCTTTTTGGTCT 59.645 52.632 0.00 0.00 0.00 3.85
977 1270 2.292916 GCGTGCGTGCTTTTTGGTC 61.293 57.895 0.00 0.00 0.00 4.02
978 1271 2.278531 GCGTGCGTGCTTTTTGGT 60.279 55.556 0.00 0.00 0.00 3.67
979 1272 2.278466 TGCGTGCGTGCTTTTTGG 60.278 55.556 1.52 0.00 35.36 3.28
980 1273 2.904549 CGTGCGTGCGTGCTTTTTG 61.905 57.895 1.52 0.00 35.36 2.44
981 1274 2.650602 CGTGCGTGCGTGCTTTTT 60.651 55.556 1.52 0.00 35.36 1.94
991 1284 3.281751 CTTCGAAGGTGCGTGCGTG 62.282 63.158 17.70 0.00 0.00 5.34
992 1285 3.036084 CTTCGAAGGTGCGTGCGT 61.036 61.111 17.70 0.00 0.00 5.24
993 1286 2.733218 TCTTCGAAGGTGCGTGCG 60.733 61.111 24.37 0.00 0.00 5.34
994 1287 2.853914 GTCTTCGAAGGTGCGTGC 59.146 61.111 24.37 3.80 0.00 5.34
995 1288 1.660575 ACGTCTTCGAAGGTGCGTG 60.661 57.895 28.24 15.45 40.62 5.34
996 1289 1.660575 CACGTCTTCGAAGGTGCGT 60.661 57.895 24.37 25.10 40.62 5.24
997 1290 3.000080 GCACGTCTTCGAAGGTGCG 62.000 63.158 30.48 27.49 46.91 5.34
999 1292 0.508641 CAAGCACGTCTTCGAAGGTG 59.491 55.000 24.37 23.41 40.62 4.00
1000 1293 0.104304 ACAAGCACGTCTTCGAAGGT 59.896 50.000 24.37 12.84 40.62 3.50
1001 1294 1.217882 AACAAGCACGTCTTCGAAGG 58.782 50.000 24.37 12.18 40.62 3.46
1002 1295 3.489785 AGTTAACAAGCACGTCTTCGAAG 59.510 43.478 19.35 19.35 40.62 3.79
1003 1296 3.450578 AGTTAACAAGCACGTCTTCGAA 58.549 40.909 8.61 0.00 40.62 3.71
1004 1297 3.047796 GAGTTAACAAGCACGTCTTCGA 58.952 45.455 8.61 0.00 40.62 3.71
1005 1298 2.160143 CGAGTTAACAAGCACGTCTTCG 60.160 50.000 8.61 0.39 43.34 3.79
1006 1299 2.793232 ACGAGTTAACAAGCACGTCTTC 59.207 45.455 8.61 0.00 31.27 2.87
1007 1300 2.538449 CACGAGTTAACAAGCACGTCTT 59.462 45.455 8.61 0.00 34.78 3.01
1008 1301 2.124903 CACGAGTTAACAAGCACGTCT 58.875 47.619 8.61 0.00 31.82 4.18
1009 1302 1.396815 GCACGAGTTAACAAGCACGTC 60.397 52.381 8.61 0.00 31.82 4.34
1010 1303 0.580104 GCACGAGTTAACAAGCACGT 59.420 50.000 8.61 8.37 34.40 4.49
1011 1304 0.579630 TGCACGAGTTAACAAGCACG 59.420 50.000 8.61 7.78 0.00 5.34
1012 1305 1.864711 TCTGCACGAGTTAACAAGCAC 59.135 47.619 8.61 0.00 0.00 4.40
1013 1306 2.135139 CTCTGCACGAGTTAACAAGCA 58.865 47.619 8.61 10.59 34.95 3.91
1014 1307 2.863658 CTCTGCACGAGTTAACAAGC 57.136 50.000 8.61 6.52 34.95 4.01
1024 1317 0.799393 CTTCTCTCGACTCTGCACGA 59.201 55.000 0.00 0.00 37.03 4.35
1025 1318 0.519519 ACTTCTCTCGACTCTGCACG 59.480 55.000 0.00 0.00 0.00 5.34
1026 1319 1.465020 CGACTTCTCTCGACTCTGCAC 60.465 57.143 0.00 0.00 35.58 4.57
1027 1320 0.799393 CGACTTCTCTCGACTCTGCA 59.201 55.000 0.00 0.00 35.58 4.41
1028 1321 1.080298 TCGACTTCTCTCGACTCTGC 58.920 55.000 0.00 0.00 37.76 4.26
1029 1322 2.034086 CGATCGACTTCTCTCGACTCTG 60.034 54.545 10.26 0.00 45.14 3.35
1030 1323 2.159212 TCGATCGACTTCTCTCGACTCT 60.159 50.000 15.15 0.00 45.14 3.24
1031 1324 2.195096 TCGATCGACTTCTCTCGACTC 58.805 52.381 15.15 0.00 45.14 3.36
1032 1325 2.296831 TCGATCGACTTCTCTCGACT 57.703 50.000 15.15 0.00 45.14 4.18
1033 1326 3.163642 GATCGATCGACTTCTCTCGAC 57.836 52.381 22.06 1.01 45.14 4.20
1049 1342 0.861866 AGATGTCGTCGTTGCGATCG 60.862 55.000 11.69 11.69 43.07 3.69
1051 1344 1.131693 TGTAGATGTCGTCGTTGCGAT 59.868 47.619 0.00 0.00 43.07 4.58
1056 1349 2.031807 CGATCCTGTAGATGTCGTCGTT 59.968 50.000 0.00 0.00 34.42 3.85
1062 1355 1.267261 CCGGTCGATCCTGTAGATGTC 59.733 57.143 0.00 0.00 34.42 3.06
1064 1357 0.039074 GCCGGTCGATCCTGTAGATG 60.039 60.000 1.90 0.00 34.42 2.90
1068 1361 1.514087 GTTGCCGGTCGATCCTGTA 59.486 57.895 1.90 0.00 0.00 2.74
1070 1363 2.885644 CGTTGCCGGTCGATCCTG 60.886 66.667 1.90 0.00 0.00 3.86
1084 1377 1.369625 GAGAATTCCATGTCGGCGTT 58.630 50.000 6.85 0.00 33.14 4.84
1161 1454 1.538876 TAGGGTTGTGCAGGGCTCT 60.539 57.895 0.00 0.00 0.00 4.09
1180 1473 0.902531 TCCCCTTTGGAGATGTCGAC 59.097 55.000 9.11 9.11 38.61 4.20
1203 1499 1.643868 CGCATGCGTGGTGTTGGTAT 61.644 55.000 31.33 0.00 34.35 2.73
1229 1525 4.785453 GGAACCGCCTGCTCCCAG 62.785 72.222 0.00 0.00 38.85 4.45
1233 1529 4.821589 CTCCGGAACCGCCTGCTC 62.822 72.222 5.23 0.00 38.24 4.26
1235 1531 4.162690 ATCTCCGGAACCGCCTGC 62.163 66.667 5.23 0.00 38.24 4.85
1278 4112 3.388841 GTGGAGGTGTCCCACGAT 58.611 61.111 0.00 0.00 43.80 3.73
1319 4153 3.692101 GTCGATCTTCTCTGAGGTCTGAA 59.308 47.826 4.59 0.00 0.00 3.02
1329 4163 2.010582 GCGGCAGGTCGATCTTCTCT 62.011 60.000 0.00 0.00 0.00 3.10
1552 4395 2.117156 GCATGCTCCTGCCGTTGAT 61.117 57.895 11.37 0.00 38.71 2.57
1713 4559 1.079127 CATGGAGGTGGTCGTGGTC 60.079 63.158 0.00 0.00 0.00 4.02
1714 4560 2.592993 CCATGGAGGTGGTCGTGGT 61.593 63.158 5.56 0.00 34.46 4.16
1715 4561 2.268920 CCATGGAGGTGGTCGTGG 59.731 66.667 5.56 0.00 34.46 4.94
1716 4562 2.436646 GCCATGGAGGTGGTCGTG 60.437 66.667 18.40 0.00 41.47 4.35
1717 4563 4.082523 CGCCATGGAGGTGGTCGT 62.083 66.667 18.40 0.00 44.45 4.34
1737 4583 2.405594 CCGAGCTCGACGAAGGAG 59.594 66.667 36.59 13.86 43.02 3.69
1773 4853 1.352156 CGTAGTGCAAGAAGGCGGTC 61.352 60.000 0.00 0.00 36.28 4.79
1834 4914 4.864334 CCCCGCCATGTCCAGCTC 62.864 72.222 0.00 0.00 0.00 4.09
1843 4923 3.411517 CCACCTCTTCCCCGCCAT 61.412 66.667 0.00 0.00 0.00 4.40
2006 5086 1.069765 CCCTCATTCCCGTCGATGG 59.930 63.158 17.27 17.27 0.00 3.51
2046 5126 2.091720 TGGCCCAGTGATATCTTTGCAT 60.092 45.455 0.00 0.00 0.00 3.96
2061 5144 1.064314 ACCGCATTACTATTTGGCCCA 60.064 47.619 0.00 0.00 0.00 5.36
2071 5154 0.253044 AGCATCCACACCGCATTACT 59.747 50.000 0.00 0.00 0.00 2.24
2109 5192 8.668510 ACATTGATAGTAGTTCATTCCATGTC 57.331 34.615 0.00 0.00 0.00 3.06
2161 5252 8.160765 TCCATACAATCAAAACCTCACTAAAGA 58.839 33.333 0.00 0.00 0.00 2.52
2162 5253 8.237267 GTCCATACAATCAAAACCTCACTAAAG 58.763 37.037 0.00 0.00 0.00 1.85
2167 5258 5.957842 TGTCCATACAATCAAAACCTCAC 57.042 39.130 0.00 0.00 30.91 3.51
2168 5259 6.244654 TCATGTCCATACAATCAAAACCTCA 58.755 36.000 0.00 0.00 39.58 3.86
2171 5262 6.924111 AGTTCATGTCCATACAATCAAAACC 58.076 36.000 0.00 0.00 39.58 3.27
2255 5347 9.788889 TCTCATCACAGAATATCTTGCAAATAT 57.211 29.630 0.00 4.65 0.00 1.28
2256 5348 9.788889 ATCTCATCACAGAATATCTTGCAAATA 57.211 29.630 0.00 2.37 0.00 1.40
2257 5349 8.693120 ATCTCATCACAGAATATCTTGCAAAT 57.307 30.769 0.00 0.00 0.00 2.32
2258 5350 7.771826 TGATCTCATCACAGAATATCTTGCAAA 59.228 33.333 0.00 0.00 33.59 3.68
2259 5351 7.277396 TGATCTCATCACAGAATATCTTGCAA 58.723 34.615 0.00 0.00 33.59 4.08
2260 5352 6.823497 TGATCTCATCACAGAATATCTTGCA 58.177 36.000 0.00 0.00 33.59 4.08
2261 5353 7.725818 TTGATCTCATCACAGAATATCTTGC 57.274 36.000 0.00 0.00 39.39 4.01
2287 5379 9.793259 TTTTCAAGGTTCAAGTCTGACTATTAT 57.207 29.630 11.30 0.00 0.00 1.28
2288 5380 9.793259 ATTTTCAAGGTTCAAGTCTGACTATTA 57.207 29.630 11.30 0.00 0.00 0.98
2289 5381 8.697507 ATTTTCAAGGTTCAAGTCTGACTATT 57.302 30.769 11.30 0.00 0.00 1.73
2290 5382 9.793259 TTATTTTCAAGGTTCAAGTCTGACTAT 57.207 29.630 11.30 0.00 0.00 2.12
2291 5383 9.621629 TTTATTTTCAAGGTTCAAGTCTGACTA 57.378 29.630 11.30 0.00 0.00 2.59
2292 5384 8.406297 GTTTATTTTCAAGGTTCAAGTCTGACT 58.594 33.333 4.06 4.06 0.00 3.41
2293 5385 8.188139 TGTTTATTTTCAAGGTTCAAGTCTGAC 58.812 33.333 0.00 0.00 0.00 3.51
2294 5386 8.287439 TGTTTATTTTCAAGGTTCAAGTCTGA 57.713 30.769 0.00 0.00 0.00 3.27
2295 5387 8.405531 TCTGTTTATTTTCAAGGTTCAAGTCTG 58.594 33.333 0.00 0.00 0.00 3.51
2296 5388 8.519799 TCTGTTTATTTTCAAGGTTCAAGTCT 57.480 30.769 0.00 0.00 0.00 3.24
2297 5389 9.750125 ATTCTGTTTATTTTCAAGGTTCAAGTC 57.250 29.630 0.00 0.00 0.00 3.01
2302 5394 9.543018 CGAGTATTCTGTTTATTTTCAAGGTTC 57.457 33.333 0.00 0.00 0.00 3.62
2303 5395 9.280174 TCGAGTATTCTGTTTATTTTCAAGGTT 57.720 29.630 0.00 0.00 0.00 3.50
2304 5396 8.842358 TCGAGTATTCTGTTTATTTTCAAGGT 57.158 30.769 0.00 0.00 0.00 3.50
2312 5404 8.727910 GGTCCTTTTTCGAGTATTCTGTTTATT 58.272 33.333 0.00 0.00 0.00 1.40
2313 5405 7.881232 TGGTCCTTTTTCGAGTATTCTGTTTAT 59.119 33.333 0.00 0.00 0.00 1.40
2314 5406 7.218614 TGGTCCTTTTTCGAGTATTCTGTTTA 58.781 34.615 0.00 0.00 0.00 2.01
2315 5407 6.059484 TGGTCCTTTTTCGAGTATTCTGTTT 58.941 36.000 0.00 0.00 0.00 2.83
2316 5408 5.617252 TGGTCCTTTTTCGAGTATTCTGTT 58.383 37.500 0.00 0.00 0.00 3.16
2317 5409 5.223449 TGGTCCTTTTTCGAGTATTCTGT 57.777 39.130 0.00 0.00 0.00 3.41
2318 5410 5.468746 TGTTGGTCCTTTTTCGAGTATTCTG 59.531 40.000 0.00 0.00 0.00 3.02
2319 5411 5.617252 TGTTGGTCCTTTTTCGAGTATTCT 58.383 37.500 0.00 0.00 0.00 2.40
2320 5412 5.699458 TCTGTTGGTCCTTTTTCGAGTATTC 59.301 40.000 0.00 0.00 0.00 1.75
2321 5413 5.617252 TCTGTTGGTCCTTTTTCGAGTATT 58.383 37.500 0.00 0.00 0.00 1.89
2322 5414 5.223449 TCTGTTGGTCCTTTTTCGAGTAT 57.777 39.130 0.00 0.00 0.00 2.12
2323 5415 4.675976 TCTGTTGGTCCTTTTTCGAGTA 57.324 40.909 0.00 0.00 0.00 2.59
2324 5416 3.553828 TCTGTTGGTCCTTTTTCGAGT 57.446 42.857 0.00 0.00 0.00 4.18
2325 5417 4.515191 TGATTCTGTTGGTCCTTTTTCGAG 59.485 41.667 0.00 0.00 0.00 4.04
2326 5418 4.456535 TGATTCTGTTGGTCCTTTTTCGA 58.543 39.130 0.00 0.00 0.00 3.71
2327 5419 4.829064 TGATTCTGTTGGTCCTTTTTCG 57.171 40.909 0.00 0.00 0.00 3.46
2328 5420 9.196552 CTATTTTGATTCTGTTGGTCCTTTTTC 57.803 33.333 0.00 0.00 0.00 2.29
2329 5421 7.657354 GCTATTTTGATTCTGTTGGTCCTTTTT 59.343 33.333 0.00 0.00 0.00 1.94
2330 5422 7.015584 AGCTATTTTGATTCTGTTGGTCCTTTT 59.984 33.333 0.00 0.00 0.00 2.27
2331 5423 6.494835 AGCTATTTTGATTCTGTTGGTCCTTT 59.505 34.615 0.00 0.00 0.00 3.11
2332 5424 6.012745 AGCTATTTTGATTCTGTTGGTCCTT 58.987 36.000 0.00 0.00 0.00 3.36
2333 5425 5.416952 CAGCTATTTTGATTCTGTTGGTCCT 59.583 40.000 0.00 0.00 0.00 3.85
2334 5426 5.415701 TCAGCTATTTTGATTCTGTTGGTCC 59.584 40.000 0.00 0.00 0.00 4.46
2335 5427 6.500684 TCAGCTATTTTGATTCTGTTGGTC 57.499 37.500 0.00 0.00 0.00 4.02
2336 5428 6.716628 TCTTCAGCTATTTTGATTCTGTTGGT 59.283 34.615 0.00 0.00 0.00 3.67
2337 5429 7.149569 TCTTCAGCTATTTTGATTCTGTTGG 57.850 36.000 0.00 0.00 0.00 3.77
2338 5430 7.540055 GGTTCTTCAGCTATTTTGATTCTGTTG 59.460 37.037 0.00 0.00 0.00 3.33
2339 5431 7.231317 TGGTTCTTCAGCTATTTTGATTCTGTT 59.769 33.333 0.00 0.00 0.00 3.16
2340 5432 6.716628 TGGTTCTTCAGCTATTTTGATTCTGT 59.283 34.615 0.00 0.00 0.00 3.41
2341 5433 7.025963 GTGGTTCTTCAGCTATTTTGATTCTG 58.974 38.462 0.00 0.00 0.00 3.02
2342 5434 6.716628 TGTGGTTCTTCAGCTATTTTGATTCT 59.283 34.615 0.00 0.00 0.00 2.40
2343 5435 6.913170 TGTGGTTCTTCAGCTATTTTGATTC 58.087 36.000 0.00 0.00 0.00 2.52
2344 5436 6.899393 TGTGGTTCTTCAGCTATTTTGATT 57.101 33.333 0.00 0.00 0.00 2.57
2345 5437 6.899393 TTGTGGTTCTTCAGCTATTTTGAT 57.101 33.333 0.00 0.00 0.00 2.57
2346 5438 6.707440 TTTGTGGTTCTTCAGCTATTTTGA 57.293 33.333 0.00 0.00 0.00 2.69
2352 5444 9.679661 TGAATTATATTTGTGGTTCTTCAGCTA 57.320 29.630 0.00 0.00 0.00 3.32
2353 5445 8.579850 TGAATTATATTTGTGGTTCTTCAGCT 57.420 30.769 0.00 0.00 0.00 4.24
2354 5446 8.677300 TCTGAATTATATTTGTGGTTCTTCAGC 58.323 33.333 0.00 0.00 37.85 4.26
2406 5498 8.920665 CGCTAGATTTAGATGTGAATCCTTAAG 58.079 37.037 4.00 0.00 33.72 1.85
2425 5518 5.646577 AATAAGATCTAACGGCGCTAGAT 57.353 39.130 27.41 27.41 38.54 1.98
2593 5687 1.086696 CCACCGTACAATGAAGCCTG 58.913 55.000 0.00 0.00 0.00 4.85
2594 5688 0.690762 ACCACCGTACAATGAAGCCT 59.309 50.000 0.00 0.00 0.00 4.58
2725 5835 1.007038 TACAACCCACTCGTCGCAC 60.007 57.895 0.00 0.00 0.00 5.34
2930 6042 1.086696 ACCCACGATCAAGATTTGCG 58.913 50.000 0.00 0.00 0.00 4.85
3011 6123 5.643379 ATGTTCCAATAAAAGACGCACAT 57.357 34.783 0.00 0.00 0.00 3.21
3047 6159 1.686115 CCTATCCAAAACAGGCCCAGG 60.686 57.143 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.