>input_sequence_54642
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------------ACCTTCGAAGACGTGCTTGTTAACTCGTGCAGAGTCGAGAGAAGTCGATCGATCGCAACGACGACATC
TACAGGATCGACCGGCAACGCCGACATGGAATTCTCGGCGCCGGTGCCGCTGCCGTTGCCGTGCCTCGTCATCGACCACG
TCGGGGCCGGAGGAGAGCCCTGCACAACCCTAGTCGACATCTCCAAAGGGGAAC---AATACCAACACCACGCATGCGAC
GACCCTGGGAG---------------------------------------------------------------------
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---------------------------------------------------------------------CAGGCGGTTCC
GGAGATGGATGACGCCGCACGGGTGGGTTCTATCGTGGGACACCTCCACCCTCGCCACCTTCCTGTGGAGCCTTCAGACC
TCAGAGAAGATCGACCTGCCGCCCCTCACGCCGGAGCAGGAGATACCATCGCACTCCGCCTGCTCCCTGTCCGGCAAGCC
---CACCACCGGTAACGCCGCCGGCTTCACGGTGGTGGCCGTCGAGCCGGAGGACACGGTGGTATGGTACTGCCACGTCG
GCGGCGACGCC---G---ACGAACGTGGATGGGTGAGGTACGAGTACGACATGGGAAGCGTCACGTCCCCGGTGATCAAC
GGCAGGAGCATGCAGGCGAAGAAGTTCATCACCCGGCTCACGGCGGTCGGAGGCAAGTTCTACTTC---AAGTCGGAGGG
TGGGCTCGGCGTGCTCGAGTTCTCCCCTGCGCCGGTCCTCGGCTCCGTGCCGGTACCCGACATCGAGCGCCCCCCGGGGA
CCACGACCACCTCCATGGCGCTCTC-------------------------------------------------------
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-------------------CTTCGTCGAGCTCGGCGGCGAGCTCTACCTGGTGACCGCCTTCTTGCACTACGACATTGGT
GGCGCCACAAGCGTTCTCGGCTGCGGCGTGTACGAGCTGGACATGGCGGGGAAGAGGTGGCGCAAGGTCTGCGACATCGG
CGACCGAGCCTTCCTCATGTGCCCTCAGTATTTCGGTGGCTGCTGCTCTGCGACCGCCTCCGGGTTGAGACCCAACTGCG
TCTATTGGATGGGGCTGTGTGGCGACAACCTGCTGCGAGTCTTCCCCATCGACGGGAATGAGGGAACGCATGGAGTGCAC
GATCCATGCAAAGATATCA---CTGGGCCAAATAGTAATGCGGTGTGGATGCTTCCTAGTGATGATCCATAGACATGGAA
TGAACTACTA--------TCAATGTATAACTGAAGGAATTGGTTGCAATTTTCTTTAGTGAGGTTTTGATTGTATGGACA
TGAACTATTTTAA-TTAATAATATGAGAGTATGAATTGAACATACATATGGTTTATTTTTATTCTAATATTTGCAAGATA
TTCTGTGATGAGATCAATATAATAGTCAGACTTGAACCTTGAAAATAAA-------------------------------
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>chr5D_1_TraesCS5D01G045900
TTAGGATGAAGTCTGAGGACAAAATCGAACAACAGCCAAAGGGATAAGATTCCCCAATGTCTT-TCCCGTGCGTGCGTTG
------TGGTAACCGCTGCCGCTGTTCATGCGAGGCTGCGGGCAGACCGGTGGTTGCGCCGCCGCGTCTTGTGCCTCGTG
GGCTGCCTCCGCCCAGGCCGAGGACCGTGCTGCCGCGCGCCGGTCGATGGCCACCGCCGCATCTCCGGAACACGTCGCGT
TTGCTGCCATCCTGTC----------------------------------------------------------------
----------CGGGCCGGGAGACATCTCCGA------------------------------------CGCGCTGCTGGGA
GTAACCGGTGCGCCGGAGACCGCCGC------------------------------------------GGTCGCTGTGTC
GCCTGAGAGGATACTCGGCCGGTGGTTGCTGCGCCGAGCGCCGC------------------------------------
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---------CTGCTGTAGGGCGCCGCACCAGAAGAGCGGTCGCCGCTCGACGCCGATGGGTACTGCGGGCGCGAGCACCG
CGCTTGAGAGTGGCCTCGCCGGGCCGTCCATGGTGTGCCATAGACACGCGCCCGAGGACTCTGTTGCCGGAGAGCCACGC
GCCGGCCGTGTCTCTGCCTCCAGATGCGAGAGAGCCGCCTCGCCGCTGTTTCCCCTTCGCTTTCTTCTCTGCGGCCAAAT
CACTCTCGGTTACGAGCGTGCTGATAACGTGTGAAAGTAAAAACGAGAGAGGATGGAGCAAATGATGGAACAGTTGTTTC
ATTGATTGAAGATTGGGGTATTTATACCCTCATTACAAGGCAGTTACAAATCACTCTCTG--------ATGGCCACCGAC
ATAGCATGGATTTATAATTAATTAATCTAATTAATTAATTCCTAACAATATTGATGCAAAAGGCACACTACTATGGAAAA
CATGCTTTTGAAATCCACTATCTATCGGCTACCTGGCCGGATCGTAAAAACAAGGCTCTGCACGACTCCGATCGTATGCA
GAGGAGGGATTCGAGTCGGGGTCCAACACGTACGTCCGGGCACGTATGCCTCCTAACACGCTTATTTAAGACCAAAAAGC
ACGCACGCACGCACCTTCGAAGACGTGCTTGTTAACTCGTGCAGAGTCGAGAGAAGTCGATCGATCGCAACGACGACATC
TACAGGATCGACCGGCAACGCCGACATGGAATTCTCGGCGCCGGTGCCGCTGCCGTTGCCGTGCCTCGTCATCGACCACG
TCGGGGCCGGAGGAGAGCCCTGCACAACCCTAGTCGACATCTCCAAAGGGGAAC---AATACCAACACCACGCATGCGAC
GACCCTGGGAG---------------------------------------------------------------------
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---------------------------------------------------------------------CAGGCGGTTCC
GGAGATGGATGACGCCGCACGGGTGGGTTCTATCGTGGGACACCTCCACCCTCGCCACCTTCCTGTGGAGCCTTCAGACC
TCAGAGAAGATCGACCTGCCGCCCCTCACGCCGGAGCAGGAGATACCATCGCACTCCGCCTGCTCCCTGTCCGGCAAGCC
---CACCACCGGTAACGCCGCCGGCTTCACGGTGGTGGCCGTCGAGCCGGAGGACACGGTGGTATGGTACTGCCACGTCG
GCGGCGACGCC---G---ACGAACGTGGATGGGTGAGGTACGAGTACGACATGGGAAGCGTCACGTCCCCGGTGATCAAC
GGCAGGAGCATGCAGGCGAAGAAGTTCATCACCCGGCTCACGGCGGTCGGAGGCAAGTTCTACTTC---AAGTCGGAGGG
TGGGCTCGGCGTGCTCGAGTTCTCCCCTGCGCCGGTCCTCGGCTCCGTGCCGGTACCCGACATCGAGCGCCCCCCGGGGA
CCACGACCACCTCCATGGCGCTCTC-------------------------------------------------------
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-------------------CTTCGTCGAGCTCGGCGGCGAGCTCTACCTGGTGACCGCCTTCTTGCACTACGACATTGGT
GGCGCCACAAGCGTTCTCGGCTGCGGCGTGTACGAGCTGGACATGGCGGGGAAGAGGTGGCGCAAGGTCTGCGACATCGG
CGACCGAGCCTTCCTCATGTGCCCTCAGTATTTCGGTGGCTGCTGCTCTGCGACCGCCTCCGGGTTGAGACCCAACTGCG
TCTATTGGATGGGGCTGTGTGGCGACAACCTGCTGCGAGTCTTCCCCATCGACGGGAATGAGGGAACGCATGGAGTGCAC
GATCCATGCAAAGATATCA---CTGGGCCAAATAGTAATGCGGTGTGGATGCTTCCTAGTGATGATCCATAGACATGGAA
TGAACTACTA--------TCAATGTATAACTGAAGGAATTGGTTGCAATTTTCTTTAGTGAGGTTTTGATTGTATGGACA
TGAACTATTTTAA-TTAATAATATGAGAGTATGAATTGAACATACATATGGTTTATTTTTATTCTAATATTTGCAAGATA
TTCTGTGATGAGATCAATATAATAGTCAGACTTGAACCTTGAAAATAAACAGAATACTCGAAAAAGGACCAACAGAATCA
AAATAGCTGAAGAACCACAAATATAATTCAGAATGACTAATTCATATCTAGATGTTTCTTAAGGAT-TCACATCTAAATC
TAGCGCCGTTAGATCTTATTTGTCTTTAAATCTCGTGCAACCTGATCGTTCCTCGCACGCTCGTCGGCCTGTGTCCAATT
CCTGTTGTTGTTGTTTT-TTTCGCGAGCTCGAGCAGGTCTGCACCACTCGATGCGTTTGTGGGCTTTCGTCTGTTTGTCT
TAGTTGCAGGCTTCATTGTAC--------------GGTGGTAGAAGAACATGTTGAGAGAGCGGCCGTTATTTTTTTCT-
-CTCGAGAGGAGAGGGGACGGTGCCCACTCATTTCCCTACGGTTCTCAAAACAAAATTCATTTCCCTATCCTTCGTGCGA
CGAGTGGGTTGTAGTGAGAAGGGAGGAGTGTAAGTAAGTGATTTTTCCGCTCCTATTTTTCTTTGTATTTTATTTTTATT
TTATTTTCTTG-TTTTA-TTTTTCTTTCTTTTTTCTTCTCTTTTTTATTTTTTTCTTATTCATTTATTTGTTTTAAATTC
ATGATTTTTTTTACTATGTTATTTATTTTCTTTAAATATCGCGCAAATCTTGATCGTGGGTTATTTTGTCGCGCGTCCCG
TGTCGCATTGTGCGTCTGGTGTCTACTTATTGGTCTGCTTGCATGTGCGTCTTTTATTGGAACATTTTCACGACGCGACC
TGGGCCTGTTTTGGATAGGTTTTGCTAATTCGCATTTAGATCAGAGTTAACAATGTCTCATTTAACTCATATACCATTAG
ATATACGTGCTTCTGAGTCGTACTCG----------------------TTGTTGTTGTGTCGTGTTTTTCG-TTCGTCCC
TCGTGAAGCAGTGAGGCCTGATATGACTTTTTTAGTGGGCCGTTTTTACATTTTGTGTATTAGTTTTTTATGTGGGCTGT
AGCTTTTTTGTGGAGGGCTACATGTCTATGTATTCTCTGTTTTTGTTTATTT
>chr5A_1
TTAGGATGAAGTCTGAGGACAAAATCGAACAACAGCCAAAGGGATAAGATTCCCCAATATCTT-TCCCATGCGTGCGTTG
------TGGTAACCACTGCCGCTGTTCATGCGAGGCTGCGGGCAGACCGGTGGTTGCGCCGCCGCGTCTTGTGCCTCGTG
GGCTGCCTCCGCCCAGGCCGAGGACCGTGCTGCCGCGCGCCGGCTGATGGCCACCGCCGCATCTCCGGAACACGTCGCGT
TTGCTACCATTCTGTC----------------------------------------------------------------
----------CAGGCCGGGAGACATCTCCAA------------------------------------CGCGCTGCTGGGA
GTAACCGGTGCGCCGGAGACCGCCGC------------------------------------------GGTCGCTGTGTT
GCCTGAGAGCATACTCGGCCGGTGGTTGCTGTGCCGAGCGCCGC------------------------------------
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---------CTGCTGTAGGGCGCCGCACCAGAAGAGCGGTCGCCGCTCGACGCCGATGGGTACTGCGGGCGCGAGCACCG
CGCTTGAGAGTGGCCCCGCCGGGCCGTCCATGGTGTGCCATAGACACGCGCCCGAGGACTCTGTTGCCGGAGAGCCACGC
GCCGGCCGTGTCTCTGCCTCCAGATGCGAGAGAGCCGCTTCGCCGCTGTTTCCCCTTCGCTTTCTTCTCTGCGGCCAAAT
CACTCTCGGTTAGGAGCGTGCTGATAACGTGTGAAAGTAAAAACGAGAGAGGATGGAGCAAATGATGGAACAGTTGTTTC
ATTGATTGAAGATTGGGGTATTTATACCCTCATTACAAGGCAGTTACAAAGAAGGCGGTTGCCAAAACATGACCACCGAC
ATAGCATGGATTTATAATTAATTAATCTAATTAATTAATTCCTAACAGTAT-----------------------------
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----------------------------------------------------
>chr2A_1
TTAGGATGAAGTCTGAGGACAAAATCGAACAACAACCAAAGGGATAAGATTCCCCAATATCTT-TCCCGTGCGTGC-TTG
------TGGTAACCACTGCCGCTGTTCATGCGAGGCTGCGGGCAGACCGGTGGTTGCGCCGCCGCGTCTTGTGCCTCGTG
GGCTGCCTCCGCCCAGGCCGAGGACCGTGCTGCCGCGCGCCGGCTGATGGCCACCGCCGCATCTCCGGAACACGTCGCGT
TTGCTACCATTCTGTC----------------------------------------------------------------
----------CAGGCCGGGAGACATCTCCAA------------------------------------CGCGCTGCTGGGA
GTAACCGGTGCGCCGGAGACCGCCGC------------------------------------------GGTCGCTGTGTC
GCCTGAGAGCATACTCGGCCGGTGGTTGCTGTGCCGAGCGCCGC------------------------------------
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---------CTGCTGTAGGGCGCCGCACCAGAAGAGCGGTCGCCGCTCGACGCCGATGGGTACTGCGGGCGCGAGCACCG
CGCTTGAGAGTGGCCCCGCCGGGCCGTCCATGGTGTGCCATAGACACGCGCCCGAGGACTCTGTTGCCGGAGAGCCACGC
GCCGGCCGTGTCTCTGCCTCCAGATGCGAGAGAGCCGCCTCGCCGCTGTTTCCCCTTCGCTTTCTTCTCTGCGGCCAAAT
CACTCTCGGTTACGAGCGTGCTGATAACGTGTGAAAGTAAAAACGAGAGAGGACGGAGTAAATGATGGAACAGTTGTTTC
ATTGATTGAAGATTGGGGTATTGATACCCTCATTACAAGGCAGTTACAAAGGAGGCGGTTGCCAAAACATGGCCACCGAC
ATAGCATGGATTTACAATTAATTAATCTAATTAATTAATTCCTAACAAAAATGAT-------------------------
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>chr1B_1
TTAGGATGAAGTCTGAGGACAAAATCGAACAACAGCCAAAGGGATAAGATTCCCCAATGTCTT-TCCCGTGCGTGCGTTG
------TGGTAACCGCTGCCGCTGTTCATGCGAGGCTGCGAGCAGACCGGTGGTTGCGCCGCCGCGTCTTGTGCCTCGTG
GGCTGCCTCCGCCCAGGCCGAGGACCGTGCTGCCGCGCGCCGGCCGATGGCCACCGCCGCATCTCCGGAACACGTCGCGT
TTGCTGCCATTCTGTC----------------------------------------------------------------
----------CGGGCCGGGAGACATCTCCAA------------------------------------TGCGCTGCTGGGA
GTAACGGGTGCGCCGGAGACCGCCGC------------------------------------------GGTCGCTGTGTC
GCCTGAGCGCATACTCGGCCGGTGGTTGCTGCGCCGAGCGCCGC------------------------------------
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---------CTGCTGTAGGGCGTCGCACCAGAAGAGCGGTCGCCGCTCGACGCCGATGGGTACTGCGGGCGCGAGCACCG
CGCTT-AGAGTGGCCTCGTCGGGCCGTCCATGGTGTGCCATAGACACGCGCCGGAGGACTCTGTTGCCGGAGAGCCACGC
GCCGGCCGTGTCTCTGCCTCCA-ATGCGAGAGAGCCGCCTCGCCGCTGTTTCCCCTTCGCTTTCTTCTATGTGGCCAAAT
CACTCTCGGTTACGAGCGTGCTGACAACGTGTGGAAGTAAAAACGAGAGAGGACGAAGCAAAGGATGGAACAGTTGTTTC
ACTGATTGAAGATTGGGGTATTTATACCCTCATTAAAAGGCAGTTACAAAGGAGGTGGTTGCCAAAACATGTCCACCGAA
GTAGCATGGATTTACAATTAATTAATCTAATTAATTAATTCCTAACAATA------------------------------
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>chr5B_52
---------------------------------------------------CCCCAATTTCTTATCCCGTGCGAGCGTCG
TGGCCATGGTAACTGCTGCCGCTGTGCAG-------TGCGGGCAGACCGGTGGTTGCGCCGCCGCGTTTTACGCCTCGTG
GGCTGCCTCTGCCCGGGCTGAGGACCGCGCTGCCGCACGCCGGCCTATGGCCGCCGCCGCGGAGCCGCGAGACACCGCGT
TTGCTGCCGGGCGTTGCCATGCCGGGCACCGGCCGTTGGCCGCTGCCGCCTCTGTGCTTTACGCGCCTGGCCGCCTCATC
GAAAAAGATGCAGGCCCGGAGTGCATCCTCCGCCACGCCGGGGCCGTGGTCCACGGCCGCCTCGGGGTGCAGCGCTGGGA
GCAGCCGGGCCGAAGGATGTCGCCACTCCGCGAGGAGCCTAGCCAAGGGAAACGTCGTCCGGGCCATGGGTCGCTGCCAA
AGTTTGCTTTGGATGGCATTAAAAACGATGCCCTAGAGGTTAGTATAACGAAATCGGAATTGAATCACCTGATTGATGTA
TGATGCAGAGTTGGTCTTTGCATTATTGTCATTTTGTACGAGATGTGTCACAGGGATCTTGTATGTTTTCTTCTGATCCA
CTTGCCGTTCTGCTGTAGGGCGCCGCACCAGAAGAGCGGTCGCCGCTCGACGCCGATGGGTACTGCGGGCGCGAGCACCG
CGCTTGAGAGTGGCCTCGCCGGGCCGTCCATGGTCTGACATAGACACGCGCCCGAGGACTCTGTTGTCGGAGAGCCACGC
GTCGGCCGTGTCTCTGCCTCCAGATGCGAGAGAGCCGCCTCGCTGCTGTTTCCCCTTCGCTTTCTTCTCTGCGGCCAAAT
CACTCTCGGTTACGAGCGTGCTGATAAC-TGTTAAAGTAAA---------------------------------------
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>chr5B_804
TGCCG---------------------------------------------------------------------------
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-------------------------------------------------CTGCCGCTTCCGTGCCTCGTCGTCGACCACG
ACGGCGCCGGAGGGGAGCCCTGCACAACCCTGCTCGACGTCTCCAAAGGGGAACATCAGCACCAATACCACGCATGCGAC
GGCGACGCCCACGCGCTGCTACGCAACAGGCGGAGATGGATGACGCCGCACGGGTGGGTGCTCTCGTGTGACCCCTCCAC
CCTCGCCACCTTCCTGTGGAGCCCTCAGACCACGGAGAAGATCGACCTGCCGCCCCTCACGCCGGGGCAGGAGATACCCT
TGCACTCTTCCTGCTCCCTCTCCGGCAAGCCCACCGCCGCGGGCTTCACCGTGGTGGCCGTCGAGCCGGAGAAAACGGCG
GTATGGTACTGCCACGTCGGCGGCAACGCCTCCGATAGACCTGGATGGGTCAGGTACGAGTACGACGTGGGAAGCGTCAC
GTTCCCGGTGGTCAACGACCGGAGAATCCAGGGGAAGAAGTTCATCACCCGGCTCACGGCGGTCGGAGGCAAGTTCTACT
TCTTCAAATCGCATGACGAGCTCGGCGTGCTCGAATTCTCGCCTGCGCCGCTCCACAGCTCGGTGCCAGTCCGCGCCGTC
GAGCGTCCCCCGGGGACCACCTGCATGGCGCCGTCGTTCGTGGAGCTCGGCGGCGAGCTCTATCTGGCCTCCGCCTTCTT
ACACTACGACAGCGGTGGCGCCACAAGTGTTCTCGGCTGCGGCGTGTACAAGCTGGACTTGGCGGGGAAGAGGTGGTGCA
AGGTCAGCGACATCGGCGACCGAGCCTTCCTCATGTGCCCTCTGTATTTCAGTGGCTGCTGCTCTGCGACCGCCTCCGGG
CTGAGACCCAACTGCGTCTATTGGATGGGGCTGTGTGACGACGACCTGCTGCGAGTCTTCGATATCGACAGGAATGAGGG
AACTCATGGAGTGCACGATCCGTGCAAAGATATCTCCGGGGCAAATCGTAATGCGGTGTGGATGCTTCCTAGTGATGAGC
CATAAACATGGAATGAACTACTAGAAGACACTCAATGTATAACTGAACGAATTTGTTGCAATATGTTTTAATGAGGTTTC
GATTGTATGGACATGAATATTCTAATTAATAATACGATAGTTTGAATTGAACATGCATATGATTTATACGTATTCGAATA
TTTGCAAGATATTCTGTAATGAGATCAATACTTTTTTGAAAGGAAATTAAAAGGATCACAAATATACATAAGATCATACT
TTAATTTACAAACATATTGTTAGCACAACGAATAATGTCATGTATGTGTGCGGGCCCCTGTGCTAGTTTGTCGAACACTT
TGTTCACTGCAAGTAACGATATTATTTTGCTCTAGTCATAGTTTGTGTTCACCGTGGCCATATTATTATTTTTTGACCGT
ATCCGTAGCTATTGTGAACAAAAATAAAAGTTCTATGCACCAAATAATTATACAAATGAACAACTTCTTTTCTTACCAAG
GACCCTTTTCTTTCCTCAAAAACATTAAAAAATATATAAGAAAAAGAAAAGAAGTACGAAGACAACGTTTATGTTTTCGG
AATCGATAACTCCCGAACGACCCCCTCCAAGAAAGGAAGTTAGGGTTCGTGCCTCTCGCCGGCGCAAGTCCGCCTCATCT
ACGGTGGCCCTAGGGCCATGGAAGCGCGGTGGATCATGGCAAGGGCCGGCGGGAGGGCTCCGTTTTTAGTCGGTTTTTTT
AATCTTGTTAGGGTTTGTGTCATACTCAGGAAGGCAAGACGGCGGCGGCTCCCTGGAGATGGAATAAAGGTCTCCCCGCC
TAGCCCCCGCTCCGGCGGTGCTGCCCGAGGAAGGAAAGGGACCCCGCCATCACCGGCGCAGGACGAGCCCGCTGTGTCTC
GCACCGCCGCCGCCGCCCGAGGGAGGAGAGGGACCCGACGCTACCGACGCAGGCCGAGCTTCGCCCGGCGGCATCCTATG
GCAGTGGCGAGGATAAGAGAGGGGGAAGTGGTGGGGAACGGCGGAGGCGGGGGCTCAATCCTCCCTAGAGCAGCGGCGGC
GGCGGAGGGAGGGGCGATAGGAACGACAGAGGCAGGAGATTTTGGCTCAGGCGGGCGTGGGTTGTTTCTAGAGGCAGAGT
TTTCGTCCGCCCTCGTGAAGTTCTCTTGTTTAATAGTAGTGTAGATATGCCGGCTCAGTCTTTCGAAGGTGTTCATAGGG
GTAGGGTCTGCGTATGTGAGTTTATAAGGGTGAGTGTATGCGCGTGTATATGAACACTTGTGTCTATAATGATGTTCAAA
AAAATTAACGCAAAAGGCACACTACTATGGAGAACGTGCTTTTGGAATCCATAGGCTAGTCCCGGCCGGATCGTAAAAAC
AGGACTGTGCACGACTCCGATCGTATGCAGAGGAGGGATTCGAGTCGGGGTCCAACACGTACATCCGTGCAGGTACGCCT
CCTATTTAAGACCACACACCCACGTGTTTGTTAACTCGTGCAGACTCGCGACGACGACATCTACATGATCGACCGGCAAC
GCCGACATGGAGTTCTCGGCGCCGGTGCCGGTGCCGTTGCCGTGCCTCGTCGTGGACCACGACGGGGCGGGAGGGGAGCC
CTGCACAACCCTACTCGACATCTCCAAAGGGAAACAGTACCAACACCACGCATGCGACGACGCCGGGAACAGGCGGTTCC
GGAGATGGATGACGCCGCACGGGTGGGTGCTCTCGTGGGACACCTCCACCCTCGCCACCTTCCTGTGGAGCCCTCAGACC
TCGGACAAGATCGACCTGCCGCCCCTCACGCCGGAGCAGGAGATACCATTGCACTCCGCCTGCTCCCTGTCCGGCAAGCC
---CGCCAC------CGCCGGCAGCTTCACGGTGGTCGCCGTCGAGCCGGAGGACACGGTGGTATGGTACTGCCACGTCG
GCGGCGACGCC---GCCGGAGGACGTGGATGGGTGAGGCACGAGTACGACATGGGAAGCGTCACGTCCCCGGTGGTCAAC
GGCAGGAGCATGCAGGCGAAGAAGTTCATCACCCGGCTCACGGCCGTCGGAGGCAAGTTCTACTTC---AAGTCGGAGGG
TGAGCTCGGGATGCTCGACTTCTCCCCTGCACCGCTCCTCGGCTCCGTGCCGGTCGCCGACATCGAGCGCCCCCCGCG--
----GACCACCTCCATGGCGCTGTC-------------------------------------------------------
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-------------------GTTCGTCGAGCTCGGCGGTGAGCTCTACCTGGTCACCGCCTTCTTGCACTACGACATCGGT
GGCGCCACAAGCGTTCTCGGCTGCGGCGTGTACAAGCTGGACTTGGCAGGGAAGAGGTGGCGCAAGGTCCGCGACATCGG
CGACCGAGCCTTCCTCATGTGCCCTCAGTATTTCGGTGGTTGCTGCTCTGCGACCGCCTCCGGGTTGAGACCCAACTGCG
TCTATTGGATGGGGCTGTGTGGCGACAAGCTGCTGCGAGTGATCGACATCGACGGGAACGAGGAAACTCATGCAGTGCAG
GATCCGTGCAAAGATATCA---CCGGGTCAAATCGTAACGCAATTTGGATGCTTCCTACCGATCCATAAATATCG-----
--------------------AATGTATACCCGAAGGAATTGGTTGCAATATATTTTAACGAAGCTTCGATTGTATGGACA
TGAATATTTTTTGCTTAATAATATGAGAGTTTGAATTGAAGTTACATATGATTTA-------------------------
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>chr5A_1045
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--------------------------------------------------------TCGATTGGTCGCTACGACTAGATC
GATAGGATCGACCGGCCACGTCGACATGCAGTTACCGGCGCTGGTGCCGATGCCGTTGCCGTGCCTCGTCGTCGACCACG
ACGGGGCCGGAGGGGAGCCCTGCACAACCCTACTCGACATCTCCAAAGGGGAACGTCAGCACCAACACGACGCATGCAGC
GGCGACGCCCACGCGCTGCTACGCAACAGGCGGTTCCAGAG---------------------------------------
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-----TGGATGGCGCCGCACGGGTGGGTTCTGTCATGGGACACCTCCACCCTCGCCACCTTCCTGTGGAGCCCTCGGACC
TCGGAGAAGATCCACCTGCCGCCCCTCACGCCGGAGCAGAAGATACCATTGCACTCCGCCTGCTCCCTCTCCGGCAAGCC
---CAC------------CGCCGGCTTCACGGTGGTGGCCGTCGAGTCGGAGGACACGGCGGTATGTTACTGCCACGTCG
GCGGCGACGCCTCCG---ACGAACGTGGATGGGTGAGGCACGAGTACGACATGGGAAGCGTCACGTCCCCGGTGGTCAAC
GGCAGGAGCATGCAGGCAAAGA----------------------------------------------------------
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>chr5B_1089
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--------------------CCGACATGGATTTCTCGGTGCCGGTGCCGGTGCCGCTTCCGTGCCTCGTCGTCGACCACG
ACGGCGCCGGAGGGGAGCCCTGCACAACCCTGCTCGACGTCTCCAAAGGGGAAC---AGTACCAACACCACACATGCGAC
GGCGACGCCCACGCGCTGCTACGCAACAGGCGG-----------------------------------------------
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--AGATGGATGACGCCGCACGGGTGGGTGCTCTCGTGTGACCCCTCCACCCTCGCCACCTTCCTGTGGAGCCCTCAGACC
TCGGAGAAGATCGACCTGCCGCCCCTCGCGCCGGGGCAGGAGATACCCTTGCAATCCTCCTGCTCCCTGTCCGGCAAGCC
CACCAC------------CGCCGGCTTCACCGTGGTCGTCGTCGAGCCGGAGGACACGGTAGTATGGTACTGCCATGTCG
GCGGTGATGCC---G---GAGGACGTGGATGGGTCAGGTACGAGTACGACGTGGGAAGCGTCACGTTCCCGGTGGTCAAT
GGTCGGAGAATCCAGGGGAAGAAGTTCATCACCCGGCTCACGGCGGTCGGAGGCAAGTTCTACTTCTTCAAATCGCATGA
CGAGCTCGGCGTGCTCGAATTCTCGCCTGCGCCGCTCCACAGCTCGGTGCCAGTCCGCGCCGTCGAGCGTCCCCCGGG--
----GACCACCTGCATGGCGCCGTC-------------------------------------------------------
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-------------------GTTCGTGGAGCTCGGCGGCGAGCTCTATATGGTCTCCGCCTTCTTGCACTACGACAGCGGT
GGCGCCACAAGTGTTCTCGGCTGCGGCGTGTACAAGCTGGACTTGGCGGGGAAGAGGTGGTGCAAGGTCAGCGACATCGG
CGACCGAGCCTTCCTCATGTGCCCTCTGTATTTCAGTGGCTGCTGCTCTGCGACCGCCTCCGGGCTGAGACCCAACTGCG
TCTATTGGATGGGGCTGTGTGACGACGACCTGCTGCGAGTCTTCGATATCGACAGGAACGAGGGATCGCATGAAGTGCAC
GATCCGTGCAAAGATATCATCACCGGGCCAAACCGTAATGCGGTGTGGATGCTTCCTAGTGATGATCCATAAACATGGAA
TAAACTACTA----------------------------------------------------------------------
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----------------------------------------------------
>chr5A_1582
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-----------------------GTTCATCACCCGGCTGACGGCGGTCGGAGGCAAGTTCTACTTC---AAGTCGGAGGG
TGGCCTCGGCGTGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGTTCGTCGAGCTCGGCGGCGAGCTCTATCTGGTCACCGCCTTCTTGCACTACGACATCGGC
GGCGCCACGAGCGTTCTCGGCTGCGGCGTCTACAAGCTGGACTTGGCAGGGAAGAGGTGGCGCAAGGTACGCGACATCGG
CGACCGAGCCTTCCTCATGTGCCCTCGGTATTTTGGTGGCTGCTGCTCTGCGACCGCCTCCAGGCTGAGGCCCAACTGCG
TCTACTGGATGGGGCTGTGCGGCGACAACCTGTTGCGAGTCTTCGACATCGACGGGAATGAGGGAACTCATGGAGTGCAC
GATCCGTGCAAAGATATCA---CCGGGCGAAACCCTAATGCAGTGTGGATGCTTCCTAATGATGATCCATAAACATGGAA
TGAACTACTAGAAGACACTCAATGTATAACTGAAGGAACTAGTTGAAAT-------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>chr2D_2369
AATATAC-------------------------------------------------------------------------
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-------------------------ATACAGAATGACTAATTCACATCTAGATGTTTTT-AAGGATGTCACATCTAAGTC
TAGCACCGTCAGATCTTGTTTGTCTTTAAATCTCGTGCAACCTGATGGTTCCTCGCACGCTCGTCGGCCTGTGTCCAATT
CATGTTGTTGTTGTTCT-TTTCGCGAGCTCGAGCAGGCCTGCACCACTCGATGCGTTTGTGGGCTTTCGTCTGTTTGTCT
TAGTTGTGGGCTTCATTGTAC--------------GGTGGTAGAAGAACATGTTGAGAGAGAGGCCGTTATTTTTTTCT-
-CTCAAGAGGAGAGGGGACGGTGCCCATTCATTTCCCTACGGTTCTCAAAACAAAATTCATTTCCATATCCTTCATGCGA
CGAGTGGGTTGTAGTGAGAAGGGAGTAGTGTAAGTAAGTGATTTTTCCGCTCCTATTTTTCTTTGTTTTTTATTTTTATT
TTATTTTCTCG-TTTTA-TTTTTCTTTCTTTTTTCTTCTCTGTTTTTA-TTTTTCTTATTCATTTATTTGTTTTAAATTC
ATGATTTTTTTCACTATGTTATTTATTTTCTTTAAATATCATGCAAATCTTGATCGTGGGTTATTTTGTCGCGCGTCCCG
TGTCGCATTGTGCGTCTGGTGTCTACTTATTGGTCTGCTTGCGTGTGCGTCTTTTATTGGAACATTTTCATGGCGCGATC
TGGGCCTGTTTTGGATAGGTTTTGCTTATTCGCATTTAGATCAGAGTTAACAATGTCTCATTTAACTCATATACCATTAG
ATATACGTGCTTCTGAGTCGTACTCG----------------------TTGTTGTTGTGTCGTGTTTTTCG-TTCGTCCC
TCGTGAAGCAGTGAGGCCTGATATGACTTTTTTAGTGGGCCGTTTTTACATTTTGTGTATTAGTTTTTTGTGTGGGCTGT
AGCTTTTTT-TGGAGGGCTACATGTCTATGTATTCCATGTTTTTGTTTATTT
>chr7D_2378
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----------------------------CAGATTGACTAATTCACATCTAGATGTTTTTTAAGGATGTCACATCTAAGTC
TAGCGCCGTTAGATCTTATTTGTCTTTGAATCTCGTGCAACATGATCGTTCCTCGCATGCTCGTCGGCCTGTGTCCAATT
CCTGTTGTTGGTTTTTT-TTTCGCGAGCTCGAGCAGGTCTGCACCGCTTGATGTGTTTGTGGGATTTCATCTGTTTGTCT
TAGTTGTGAGCTTCATTGTAC--------------GATGGTAGAAGAACATGGTGAGAGAGCGGCCGTTAT-TTTTTCT-
-CTCGAGAGGAGAAGTGACGGTGCCCATTCATTTTCCTACGTTTCTGAAAACAAAATTCATTTGCCTATCCTTCATGCGA
CGAGTGGGTTGTAGTGAGAAGGGAGGAGTGTAAGTACGTGATTTTTCGT-TCATATTTTTCTTTGTTTTTTATTTTTATT
TTATTTTCTTGATTTCCTTTTCCTTTTATTTTTTCTTCTCTATCTTTATTTTTTCTTATTCATTTATTTGTTTTAAATTC
ATGATTTTTTTCCATATGTTATTTATTTTCTTTAAATATCGTGCAAATCTTGATCGTGGGTTGTTTTGTCGCGCGTCCAG
TGTCGCACTGTGCGTCTCGTGTCTACTTATTGATCTGCTCGCGT-TGTGTCTTTTATTGGGACATTT-CACGGCGTGATC
TGGGTCCGTTTCGGATAGGTTTTGCTAATTCGCATTTAGATGAGAGTTAACAATATCTCATTTAACTCATGTACCATTAG
ATATACGTGCTTCTGAGTCGTACTCG----------------------TTGTTGTTCTATCGTGTTTTTAGTTTCGTCCC
TCGTGAAGCAGTGAGGCCTGATATGACTTTTTTAGTGGGCCGTATTTACATTTTGTGTATTCATTTTTTGTGTGGGCTGT
AGCTGTTTTGTGGAGGGCTACATGTCTATGTATTCCCTGTTTTTGTTTATTT
>chr4D_2378
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----------------------------CAGATTGACTAATTCACATCTAGATGTTTTTTAAGGATGTCACATCTAAGTC
TAGCGCCGTTAGATCTTATTTGTCTTT-AATCTCGTGCAACATGATCGTTCCTCGCATGCTCGTCGGCCTGTGTCCAATT
CCTGTTGTTGGTTTTTT-TT-CGTGAGCTCGAGCAGGTCTGCACCGCTTGATGTGTTTGTGGGCTTTCGTCTGTTTGTCT
TAGTTGTGAGCTTCATTGTAC--------------GATGGTAGAAGAACATGGGGTGAGAGTGGCTGTTAT-TTTTTCT-
-CTCGAGAGGAGAAGTGACGGTGCCCATTCATTTTCCTACGGTTCTGAAAACAAAATTCATTTCCCTATCCTTCATGCGA
CGAGTGGGTTGTAGTGAGAAGGGAGGAGTGTAAGTAAGTGATTTTTCGT-TCATATTTTTCTTTG--TTTTATTTTTATT
TTATTTTCTTGATTTCCTTTTTCTTTTATTTTTTCTTCTCTATCTTTATTTTTTCTTATTCATTTATTTGTTTTAAATTC
ATGATTTTTTTCCATATGTTATTTATTTTCTTTAAATATCGTGCAAATCTTGATCGTGGGTTGTTTTGTCGCGCGTCCAG
TGTCGCACTATGCGTCTGGTGTCTACTTATTGATCTGCTCGTGT-TGTGTCTTTTATTGGGACATTT-CACGGCGTGATC
TGGGTCCGTTTCGGATAGGTTTTGCTAATTCGCATTTAGATCAGAGTTAACAATATCTCATTTAACTCATATACCATTAG
ATATACGTGCTTCTGAGTCGTACTCATTGTTGTTCTGTCTCGTACTCATTGTTGTTCTGTCGTGTTTTTCGTTTCGTCCC
TCGTGAAGCAATGAGGCCTGATATGACTTTTTTAGTGGGCCGTATTTACATTTTGTGTATTCATTTTTTGTGTGGGCTGT
AGCTGTTTTGTGGAGGGCTACATGTCTATGTATTCCCTGTTTTTGTTTATTT
>chr2A_2382
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--------------------------------ATGACTAATTCGCATCTAGATGTTTTTTAAGGATGTCACATCTAAGTC
------------ATCTTATTTGTCTTTAAATCTCGTGCAACCTGATTGTTCCTCGCACGCTCGTCAGCCTGTGTCCAATT
CCCGTTGTTGTTTTTTTCTT-CGCGAGCTCGAGTAGGTCTGCACCGCTTGATGTGTTTGTGGGCTTTCATCTGTTTGTCT
TAGTTGTGGGCTTCATTTTCCTACTCGTTGTCTTAGGTGTTAGAAGAACATGTTGAAAGAGCGGCCGTTAT-TTTTTTTC
ACTCGAGAGGAGAGGGGACGGTGCCCATTCATTTTCCTACTGTTCTCAAAACAAAATTCATTTCCCTATCCTTCATGCGA
CGAGTGGGTTGTAGTGAGAAGGGAGGAGTGTAAGTAAGTGATTTTTCTGCTCCTATTTTCTTTGTTTTTTTATTTTTATT
TTATTTTCTCG-TTTCCTTTTCCTTTTCTTTTTTCTTCTCTGTTTTTCTTTTTTCTTATTCATTTATTTGTTTTAAATTC
ATGATTTTTTT-ACTATGTTATTTATTCTCTTTAAATATCGTGCAAATCTTGATCGTGGGTTATTTTTTCACGCGTCCCA
TGTCACATTGTGCATCTGGTGTCTACTTATTGGTCTGCTCGCCTGTGCATCTTTTATTGGGACATTTTCACGGCGCGATC
TAGGCATGTTTTGGATAAGTTTTGCTAATTCGCATTTAGATCAGAGTTAACAATGTCTCATTTAACTCATATACCATTAG
ATATACGTGCTTCTGAGTCGTACTCG----------------------TTGTTGTTGTGTCGTGTTTTTCG-TTCGTCCC
TCGTGAAGCAGTGAGGCCTGATATGACTTTTTTAGTGGGTCATTTTTACATTTTGTGTATTAGTTTTTTGTGTGGGCTGT
AGCTTTTTTGTGGAGGGCTACATGTCTATGTATTCCCTGATTTTGTTTATTT
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
----------S---------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------SS-SS-SS-S--------------------
-------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S----S-----S-S---
S-S-------------S-------------S---------------------------------------S---------
S------------S------------------S-------------------------S---------------------
-S-SSS-SSSS---------------------------------------------------------------------
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-------------------------------S----------------------------------------S-------
--S----------------------------------------------S------------------------------
---------SSSSSS-----------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
------------------S---------------S-------------------S-----------------------SS
SSSS------------------S---------------------------------------------------------
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-------------------S--------------------------------S-----------------------S---
---------------------------------S--------S--------------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------SS----------------------------------
-----S-----------------S---------S-------------------------------------S--------
-------------------------------------------------S-SS----SS--S-S--S-------------
----SSS----SS-----------------S---------SS--------S----SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--S----------------S------------S-------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------SS------------------------------------------------------------------------
---------------------------S----------------------------------------------S-----
------------------------------------------------------------------S-------------
-----------------------------------------S----SS--------------------------------
-----------S-----------------------------S--------------------------------------
------------------------------------------S-----------------------------S-----S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------------------------------S----------------
>forward_1262
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------------------------------------------CGTATGCCTCCTAACACGCT------------------
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----------------------------------------------------
>reverse_5154
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---------------------------------AGTAATGCGGTGTGGATGCT---------------------------
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----------------------------------------------------
>forward_1312
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------------ACCTTCGAAGACGTGCTTGT------------------------------------------------
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>reverse_5688
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-------AGGCTTCATTGTACGGTGGT-----------------------------------------------------
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----------------------------------------------------
