AutoCloner

Multiple sequence alignment - TraesCS5D01G044200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G044200	chr5D	100.000	3344	0	0	1	3344	43300997	43304340	0.000000e+00	6176.0
1	TraesCS5D01G044200	chr5D	90.057	704	54	11	1	696	412713507	412714202	0.000000e+00	898.0
2	TraesCS5D01G044200	chr5D	83.453	139	20	3	3139	3275	369760961	369761098	3.500000e-25	126.0
3	TraesCS5D01G044200	chr5B	94.019	2692	104	20	683	3344	40980626	40983290	0.000000e+00	4026.0
4	TraesCS5D01G044200	chr5B	82.278	158	22	6	3123	3275	647384410	647384566	7.530000e-27	132.0
5	TraesCS5D01G044200	chr5A	95.349	1634	48	7	752	2357	33120855	33122488	0.000000e+00	2571.0
6	TraesCS5D01G044200	chr5A	100.000	33	0	0	683	715	33120823	33120855	1.000000e-05	62.1
7	TraesCS5D01G044200	chr1A	91.172	691	47	10	1	682	73810691	73811376	0.000000e+00	926.0
8	TraesCS5D01G044200	chr4D	91.189	681	51	7	8	682	8414086	8414763	0.000000e+00	917.0
9	TraesCS5D01G044200	chr4D	90.456	702	54	10	1	693	329141861	329142558	0.000000e+00	913.0
10	TraesCS5D01G044200	chr4D	80.203	197	29	9	3084	3275	421215933	421216124	4.500000e-29	139.0
11	TraesCS5D01G044200	chr3D	90.490	694	55	8	1	685	604796318	604795627	0.000000e+00	905.0
12	TraesCS5D01G044200	chr7D	90.421	689	54	8	1	679	51419663	51420349	0.000000e+00	896.0
13	TraesCS5D01G044200	chr7D	90.318	692	52	8	1	682	384816095	384816781	0.000000e+00	893.0
14	TraesCS5D01G044200	chr6B	90.304	691	57	7	1	683	523507352	523508040	0.000000e+00	896.0
15	TraesCS5D01G044200	chr6D	90.202	694	54	10	1	685	423214244	423214932	0.000000e+00	893.0
16	TraesCS5D01G044200	chr6D	80.693	202	26	10	3131	3323	76129516	76129713	9.670000e-31	145.0
17	TraesCS5D01G044200	chr6A	78.188	298	40	15	3065	3342	52698524	52698232	2.060000e-37	167.0
18	TraesCS5D01G044200	chr3A	79.091	220	38	7	3084	3299	66259141	66258926	9.670000e-31	145.0
19	TraesCS5D01G044200	chr2D	85.401	137	17	3	3141	3275	648292759	648292624	4.500000e-29	139.0
20	TraesCS5D01G044200	chr2D	84.892	139	16	3	3135	3273	46701246	46701113	5.820000e-28	135.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G044200	chr5D	43300997	43304340	3343	False	6176.00	6176	100.0000	1	3344	1	chr5D.!!$F1	3343
1	TraesCS5D01G044200	chr5D	412713507	412714202	695	False	898.00	898	90.0570	1	696	1	chr5D.!!$F3	695
2	TraesCS5D01G044200	chr5B	40980626	40983290	2664	False	4026.00	4026	94.0190	683	3344	1	chr5B.!!$F1	2661
3	TraesCS5D01G044200	chr5A	33120823	33122488	1665	False	1316.55	2571	97.6745	683	2357	2	chr5A.!!$F1	1674
4	TraesCS5D01G044200	chr1A	73810691	73811376	685	False	926.00	926	91.1720	1	682	1	chr1A.!!$F1	681
5	TraesCS5D01G044200	chr4D	8414086	8414763	677	False	917.00	917	91.1890	8	682	1	chr4D.!!$F1	674
6	TraesCS5D01G044200	chr4D	329141861	329142558	697	False	913.00	913	90.4560	1	693	1	chr4D.!!$F2	692
7	TraesCS5D01G044200	chr3D	604795627	604796318	691	True	905.00	905	90.4900	1	685	1	chr3D.!!$R1	684
8	TraesCS5D01G044200	chr7D	51419663	51420349	686	False	896.00	896	90.4210	1	679	1	chr7D.!!$F1	678
9	TraesCS5D01G044200	chr7D	384816095	384816781	686	False	893.00	893	90.3180	1	682	1	chr7D.!!$F2	681
10	TraesCS5D01G044200	chr6B	523507352	523508040	688	False	896.00	896	90.3040	1	683	1	chr6B.!!$F1	682
11	TraesCS5D01G044200	chr6D	423214244	423214932	688	False	893.00	893	90.2020	1	685	1	chr6D.!!$F2	684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
730	750	0.595053	CTACATGGCGTAGGAGTGCG	60.595	60.0	0.0	0.0	43.46	5.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2443	2496	0.036732	TAAGCAAGCTGACACTGGGG	59.963	55.0	0.0	0.0	0.0	4.96	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
134	140	6.978343	TGATGTTTACACTATAGTTGCCAC	57.022	37.500	1.56	0.00	0.00	5.01
145	151	5.643777	ACTATAGTTGCCACAGTGCTTAAAG	59.356	40.000	0.00	0.00	0.00	1.85
192	198	5.697633	CAGTTTGTAGAGCATGGCAATTTTT	59.302	36.000	0.00	0.00	0.00	1.94
193	199	6.867816	CAGTTTGTAGAGCATGGCAATTTTTA	59.132	34.615	0.00	0.00	0.00	1.52
194	200	7.062605	CAGTTTGTAGAGCATGGCAATTTTTAG	59.937	37.037	0.00	0.00	0.00	1.85
195	201	6.588719	TTGTAGAGCATGGCAATTTTTAGT	57.411	33.333	0.00	0.00	0.00	2.24
196	202	7.695480	TTGTAGAGCATGGCAATTTTTAGTA	57.305	32.000	0.00	0.00	0.00	1.82
201	207	8.483307	AGAGCATGGCAATTTTTAGTATTTTG	57.517	30.769	0.00	0.00	0.00	2.44
209	216	9.598517	GGCAATTTTTAGTATTTTGATGATGGA	57.401	29.630	0.00	0.00	0.00	3.41
323	330	8.635765	TCATGGCAAGTCTAGTTTCTTAATTT	57.364	30.769	0.00	0.00	0.00	1.82
427	437	6.071221	ACACCATGTCAATTCAAGTGCAATAT	60.071	34.615	0.00	0.00	32.56	1.28
440	450	6.601217	TCAAGTGCAATATACATGGCAACTTA	59.399	34.615	0.00	0.00	42.87	2.24
673	693	2.932905	CACACGTGTGGGCGTTAC	59.067	61.111	35.65	0.00	43.83	2.50
715	735	2.238395	TGCCAAGTGGTATGATGCTACA	59.762	45.455	0.00	0.00	37.57	2.74
718	738	3.817084	CCAAGTGGTATGATGCTACATGG	59.183	47.826	6.86	6.86	31.87	3.66
730	750	0.595053	CTACATGGCGTAGGAGTGCG	60.595	60.000	0.00	0.00	43.46	5.34
735	755	2.260434	GCGTAGGAGTGCGAACCA	59.740	61.111	0.00	0.00	32.81	3.67
812	832	1.004918	CGTCTTCTTTCTGGGCCGT	60.005	57.895	0.00	0.00	0.00	5.68
824	844	2.662527	GGCCGTCGTTCCGTTGAA	60.663	61.111	0.00	0.00	0.00	2.69
998	1027	3.518998	GAGCGAGCTCTGCCCGTA	61.519	66.667	21.48	0.00	39.80	4.02
1031	1084	2.125350	GCGCCTCCTCCAGTTCAG	60.125	66.667	0.00	0.00	0.00	3.02
1188	1241	0.040246	GCGCGGAGATACTCAGGTAC	60.040	60.000	8.83	0.00	31.08	3.34
1587	1640	3.728373	GTGGCCGAGGGGTTCCAT	61.728	66.667	0.00	0.00	34.97	3.41
1719	1772	1.046472	AGGTCCACGTCACCTTCACA	61.046	55.000	9.57	0.00	41.95	3.58
1890	1943	3.816920	CTGCGCGTCGTCGTCAAG	61.817	66.667	8.43	0.00	39.49	3.02
2227	2280	1.299976	GGCATTCCGGAGAAGTGGT	59.700	57.895	3.34	0.00	34.86	4.16
2253	2306	2.358247	GCGAACAAGGGGCTCGAA	60.358	61.111	0.00	0.00	34.52	3.71
2350	2403	1.211969	GAGCTGGACTAACGCGTCA	59.788	57.895	14.44	4.52	35.63	4.35
2403	2456	4.038162	CACTAGTAGTATGCCCAGAACTCC	59.962	50.000	1.57	0.00	0.00	3.85
2432	2485	2.126346	GTCTTTGCATGTGCGCCC	60.126	61.111	4.18	0.00	45.83	6.13
2433	2486	2.596923	TCTTTGCATGTGCGCCCA	60.597	55.556	4.18	0.00	45.83	5.36
2434	2487	2.126228	CTTTGCATGTGCGCCCAG	60.126	61.111	4.18	0.00	45.83	4.45
2435	2488	3.636313	CTTTGCATGTGCGCCCAGG	62.636	63.158	4.18	1.15	45.83	4.45
2474	2527	6.262049	TGTCAGCTTGCTTAGTTTGTTGATAA	59.738	34.615	0.00	0.00	0.00	1.75
2475	2528	6.798959	GTCAGCTTGCTTAGTTTGTTGATAAG	59.201	38.462	0.00	0.00	0.00	1.73
2511	2564	6.255453	GCAAGTTTCTTAATTGCAGTTCAACA	59.745	34.615	0.00	0.00	46.64	3.33
2672	2729	5.649782	TTTTCTTCGTTCCGTACTCCTAT	57.350	39.130	0.00	0.00	0.00	2.57
2720	2779	7.275999	GGAGTTGCTAAACTTATCTGTGTAGTC	59.724	40.741	0.00	0.00	46.84	2.59
2732	2791	5.290493	TCTGTGTAGTCATTTTGGTGTCT	57.710	39.130	0.00	0.00	0.00	3.41
2733	2792	6.413783	TCTGTGTAGTCATTTTGGTGTCTA	57.586	37.500	0.00	0.00	0.00	2.59
2764	2823	5.500645	AAAGACTGGTGCTTAAACTTGTC	57.499	39.130	0.00	0.00	0.00	3.18
2788	2847	2.161012	ACCGTGTACATACAGTGTCTCG	59.839	50.000	0.00	0.00	42.29	4.04
2795	2854	4.602340	ACATACAGTGTCTCGTTCCTTT	57.398	40.909	0.00	0.00	35.77	3.11
2796	2855	4.557205	ACATACAGTGTCTCGTTCCTTTC	58.443	43.478	0.00	0.00	35.77	2.62
2797	2856	4.281182	ACATACAGTGTCTCGTTCCTTTCT	59.719	41.667	0.00	0.00	35.77	2.52
2798	2857	3.372660	ACAGTGTCTCGTTCCTTTCTC	57.627	47.619	0.00	0.00	0.00	2.87
2799	2858	2.287668	ACAGTGTCTCGTTCCTTTCTCG	60.288	50.000	0.00	0.00	0.00	4.04
2800	2859	1.955080	AGTGTCTCGTTCCTTTCTCGT	59.045	47.619	0.00	0.00	0.00	4.18
2801	2860	2.361438	AGTGTCTCGTTCCTTTCTCGTT	59.639	45.455	0.00	0.00	0.00	3.85
2802	2861	2.725206	GTGTCTCGTTCCTTTCTCGTTC	59.275	50.000	0.00	0.00	0.00	3.95
2803	2862	2.288030	TGTCTCGTTCCTTTCTCGTTCC	60.288	50.000	0.00	0.00	0.00	3.62
2804	2863	2.030096	GTCTCGTTCCTTTCTCGTTCCT	60.030	50.000	0.00	0.00	0.00	3.36
2805	2864	2.626743	TCTCGTTCCTTTCTCGTTCCTT	59.373	45.455	0.00	0.00	0.00	3.36
2806	2865	3.822735	TCTCGTTCCTTTCTCGTTCCTTA	59.177	43.478	0.00	0.00	0.00	2.69
2807	2866	4.461781	TCTCGTTCCTTTCTCGTTCCTTAT	59.538	41.667	0.00	0.00	0.00	1.73
2808	2867	5.047519	TCTCGTTCCTTTCTCGTTCCTTATT	60.048	40.000	0.00	0.00	0.00	1.40
2860	2919	1.625315	ACATGTCAGTGGCTAAGAGCA	59.375	47.619	0.00	0.00	44.75	4.26
2951	3010	5.240121	ACGTACGAAACCCTGAAATACAAT	58.760	37.500	24.41	0.00	0.00	2.71
3033	3092	1.004679	CTGCACAATTTGGCCACCC	60.005	57.895	3.88	0.00	0.00	4.61
3036	3095	1.288752	CACAATTTGGCCACCCGAC	59.711	57.895	3.88	0.00	0.00	4.79
3051	3110	2.038557	ACCCGACAGAACTATGCTTTGT	59.961	45.455	0.00	0.00	0.00	2.83
3052	3111	2.416547	CCCGACAGAACTATGCTTTGTG	59.583	50.000	0.00	0.00	0.00	3.33
3139	3198	8.317679	TGCATTGCCTACCTGTTTTATTTTTAT	58.682	29.630	6.12	0.00	0.00	1.40
3171	3230	6.430925	CCAAATTCCTGTTTAGTCTCATGACA	59.569	38.462	0.00	0.00	45.20	3.58
3177	3236	7.323420	TCCTGTTTAGTCTCATGACACATAAG	58.677	38.462	3.84	0.00	45.20	1.73
3277	3336	7.416154	TTGTGTACTTTGAAGAGGTAAATCG	57.584	36.000	0.00	0.00	0.00	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	19	6.401367	CGAGACGGATTTAATGGTAAAAACGT	60.401	38.462	9.69	9.69	42.85	3.99
50	52	5.640147	TCAACATGGGGTCTAGTTTTGAAT	58.360	37.500	0.00	0.00	0.00	2.57
96	102	2.086869	ACATCATGGCGACTTTTGAGG	58.913	47.619	0.00	0.00	0.00	3.86
98	104	4.517075	TGTAAACATCATGGCGACTTTTGA	59.483	37.500	0.00	0.00	0.00	2.69
106	112	6.649436	CAACTATAGTGTAAACATCATGGCG	58.351	40.000	6.06	0.00	0.00	5.69
134	140	5.181690	TGGCAACTTTACTTTAAGCACTG	57.818	39.130	0.00	0.00	37.61	3.66
196	202	9.965902	AAGTACTAGAGTTTCCATCATCAAAAT	57.034	29.630	0.00	0.00	0.00	1.82
201	207	7.492994	GGTCAAAGTACTAGAGTTTCCATCATC	59.507	40.741	0.00	0.00	0.00	2.92
209	216	8.974060	TTTTCATGGTCAAAGTACTAGAGTTT	57.026	30.769	0.00	0.00	0.00	2.66
244	251	6.762661	GCACTTAAAATTGCCATGGTTCATAT	59.237	34.615	14.67	0.00	32.21	1.78
410	420	6.096564	TGCCATGTATATTGCACTTGAATTGA	59.903	34.615	0.00	0.00	30.76	2.57
418	428	8.567948	GTTATAAGTTGCCATGTATATTGCACT	58.432	33.333	0.00	0.00	34.99	4.40
478	494	3.791887	CGCGACAAGATCTTCGAAACTAT	59.208	43.478	18.67	0.00	37.43	2.12
494	510	1.208535	ACCATTAAATCCCTCGCGACA	59.791	47.619	3.71	0.00	0.00	4.35
585	601	3.469739	TCGTATGCATGCATGTGAGATT	58.530	40.909	37.43	16.54	37.82	2.40
586	602	3.116079	TCGTATGCATGCATGTGAGAT	57.884	42.857	37.43	17.28	37.82	2.75
715	735	1.153628	GTTCGCACTCCTACGCCAT	60.154	57.895	0.00	0.00	0.00	4.40
718	738	0.101759	TATGGTTCGCACTCCTACGC	59.898	55.000	0.00	0.00	0.00	4.42
730	750	1.847088	AGGGGAAGCTTCCTATGGTTC	59.153	52.381	37.72	22.50	46.72	3.62
735	755	1.135960	GCAGAGGGGAAGCTTCCTAT	58.864	55.000	37.72	28.20	46.72	2.57
824	844	1.605058	CGATCCACTTGGTCCCGAGT	61.605	60.000	0.00	0.00	41.06	4.18
991	1020	1.337071	GAAGATCGACATCTACGGGCA	59.663	52.381	0.00	0.00	38.55	5.36
992	1021	1.337071	TGAAGATCGACATCTACGGGC	59.663	52.381	0.00	0.00	38.55	6.13
993	1022	3.633235	CTTGAAGATCGACATCTACGGG	58.367	50.000	0.00	0.00	38.55	5.28
998	1027	1.565305	GCGCTTGAAGATCGACATCT	58.435	50.000	0.00	0.00	41.59	2.90
1171	1224	0.592148	CCGTACCTGAGTATCTCCGC	59.408	60.000	0.00	0.00	34.92	5.54
1497	1550	1.811266	CATGAACCACTCCTCCGCG	60.811	63.158	0.00	0.00	0.00	6.46
1587	1640	1.330234	TGCTGGACGTGTACAAGGTA	58.670	50.000	13.47	0.00	0.00	3.08
1699	1752	0.319641	GTGAAGGTGACGTGGACCTC	60.320	60.000	14.76	9.81	43.42	3.85
2350	2403	3.301794	TGCTACATGGCCAAATCATCT	57.698	42.857	10.96	0.00	0.00	2.90
2440	2493	3.971702	AAGCTGACACTGGGGCCC	61.972	66.667	18.17	18.17	0.00	5.80
2441	2494	2.674380	CAAGCTGACACTGGGGCC	60.674	66.667	0.00	0.00	0.00	5.80
2442	2495	3.368571	GCAAGCTGACACTGGGGC	61.369	66.667	0.00	0.00	0.00	5.80
2443	2496	0.036732	TAAGCAAGCTGACACTGGGG	59.963	55.000	0.00	0.00	0.00	4.96
2444	2497	1.271054	ACTAAGCAAGCTGACACTGGG	60.271	52.381	0.00	0.00	0.00	4.45
2445	2498	2.175878	ACTAAGCAAGCTGACACTGG	57.824	50.000	0.00	0.00	0.00	4.00
2446	2499	3.313526	ACAAACTAAGCAAGCTGACACTG	59.686	43.478	0.00	0.00	0.00	3.66
2474	2527	9.816354	AATTAAGAAACTTGCAAATGTACAACT	57.184	25.926	0.00	0.00	0.00	3.16
2475	2528	9.848172	CAATTAAGAAACTTGCAAATGTACAAC	57.152	29.630	0.00	0.00	0.00	3.32
2569	2626	0.811616	GCTGGATCTGGTGGCTTACG	60.812	60.000	0.00	0.00	0.00	3.18
2678	2735	4.214758	GCAACTCCGGTGTATTTAACTTGT	59.785	41.667	10.03	0.00	0.00	3.16
2679	2736	4.454504	AGCAACTCCGGTGTATTTAACTTG	59.545	41.667	10.03	3.07	0.00	3.16
2680	2737	4.648651	AGCAACTCCGGTGTATTTAACTT	58.351	39.130	10.03	0.00	0.00	2.66
2693	2752	4.929808	ACACAGATAAGTTTAGCAACTCCG	59.070	41.667	0.00	0.00	42.89	4.63
2720	2779	9.796120	TCTTTTGTAACTTTAGACACCAAAATG	57.204	29.630	0.00	0.00	32.05	2.32
2732	2791	8.508883	TTAAGCACCAGTCTTTTGTAACTTTA	57.491	30.769	0.00	0.00	0.00	1.85
2733	2792	5.914898	AAGCACCAGTCTTTTGTAACTTT	57.085	34.783	0.00	0.00	0.00	2.66
2764	2823	1.200716	ACACTGTATGTACACGGTCGG	59.799	52.381	0.00	0.00	40.88	4.79
2788	2847	4.329256	CCGAATAAGGAACGAGAAAGGAAC	59.671	45.833	0.00	0.00	0.00	3.62
2795	2854	2.086869	ACGTCCGAATAAGGAACGAGA	58.913	47.619	12.32	0.00	42.77	4.04
2796	2855	2.556534	ACGTCCGAATAAGGAACGAG	57.443	50.000	12.32	0.00	42.77	4.18
2797	2856	2.746904	TGTACGTCCGAATAAGGAACGA	59.253	45.455	0.00	0.00	42.77	3.85
2798	2857	2.848302	GTGTACGTCCGAATAAGGAACG	59.152	50.000	0.00	0.00	42.77	3.95
2799	2858	3.182182	GGTGTACGTCCGAATAAGGAAC	58.818	50.000	0.00	0.00	42.77	3.62
2800	2859	2.166254	GGGTGTACGTCCGAATAAGGAA	59.834	50.000	0.00	0.00	42.77	3.36
2801	2860	1.750778	GGGTGTACGTCCGAATAAGGA	59.249	52.381	0.00	0.00	38.11	3.36
2802	2861	1.753073	AGGGTGTACGTCCGAATAAGG	59.247	52.381	0.00	0.00	0.00	2.69
2803	2862	2.805845	CAGGGTGTACGTCCGAATAAG	58.194	52.381	0.00	0.00	0.00	1.73
2804	2863	1.135024	GCAGGGTGTACGTCCGAATAA	60.135	52.381	0.00	0.00	0.00	1.40
2805	2864	0.457035	GCAGGGTGTACGTCCGAATA	59.543	55.000	0.00	0.00	0.00	1.75
2806	2865	1.217244	GCAGGGTGTACGTCCGAAT	59.783	57.895	0.00	0.00	0.00	3.34
2807	2866	2.652530	GCAGGGTGTACGTCCGAA	59.347	61.111	0.00	0.00	0.00	4.30
2808	2867	3.376078	GGCAGGGTGTACGTCCGA	61.376	66.667	0.00	0.00	0.00	4.55
2847	2906	0.980231	CTCCCCTGCTCTTAGCCACT	60.980	60.000	0.00	0.00	41.51	4.00
2875	2934	2.992817	AAATCCTTGCGTGTGGGGCA	62.993	55.000	0.00	0.00	38.93	5.36
2977	3036	0.399075	GTTTCGAAACCCCTCCTCCA	59.601	55.000	27.01	0.00	32.82	3.86
2984	3043	1.658114	GTGGCAGTTTCGAAACCCC	59.342	57.895	31.87	29.82	39.71	4.95
3033	3092	3.109230	GCACAAAGCATAGTTCTGTCG	57.891	47.619	0.00	0.00	44.79	4.35
3051	3110	6.947258	GCTTTCAAGCTAAAAGAATTTTGCA	58.053	32.000	20.21	0.00	46.89	4.08
3078	3137	3.003378	CAGAGCGATACGATGGAACTACA	59.997	47.826	0.00	0.00	0.00	2.74
3139	3198	8.533569	AGACTAAACAGGAATTTGGAGAAAAA	57.466	30.769	0.00	0.00	0.00	1.94

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.