Multiple sequence alignment - TraesCS5D01G039100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G039100 chr5D 100.000 3235 0 0 1 3235 40181935 40185169 0.000000e+00 5975.0
1 TraesCS5D01G039100 chr5B 88.464 1673 65 32 1106 2705 33557391 33555774 0.000000e+00 1903.0
2 TraesCS5D01G039100 chr5B 88.294 598 46 10 6 585 33558303 33557712 0.000000e+00 695.0
3 TraesCS5D01G039100 chr5B 87.164 335 21 10 680 1004 33557711 33557389 8.530000e-96 361.0
4 TraesCS5D01G039100 chr5B 84.762 315 13 5 2922 3235 33555601 33555321 1.900000e-72 283.0
5 TraesCS5D01G039100 chr5B 92.982 57 3 1 2881 2937 33555703 33555648 7.440000e-12 82.4
6 TraesCS5D01G039100 chr5A 89.070 1473 71 32 1106 2539 28228139 28229560 0.000000e+00 1746.0
7 TraesCS5D01G039100 chr5A 90.857 350 28 2 4 353 28227339 28227684 1.760000e-127 466.0
8 TraesCS5D01G039100 chr5A 88.410 371 19 7 2878 3235 28229812 28230171 2.980000e-115 425.0
9 TraesCS5D01G039100 chr5A 90.741 270 12 4 710 974 28227862 28228123 6.640000e-92 348.0
10 TraesCS5D01G039100 chr5A 89.268 205 10 5 3029 3226 28237275 28237474 2.490000e-61 246.0
11 TraesCS5D01G039100 chr5A 85.882 170 14 7 431 595 28227683 28227847 4.290000e-39 172.0
12 TraesCS5D01G039100 chr7B 81.046 1166 122 50 1107 2236 719146548 719147650 0.000000e+00 837.0
13 TraesCS5D01G039100 chr7B 98.182 55 1 0 2293 2347 719147745 719147799 2.660000e-16 97.1
14 TraesCS5D01G039100 chr4D 88.664 494 48 8 4 492 291532468 291532958 2.150000e-166 595.0
15 TraesCS5D01G039100 chr4D 81.692 792 66 40 1751 2518 291587105 291587841 1.290000e-163 586.0
16 TraesCS5D01G039100 chr4D 80.351 570 38 20 1137 1693 291586578 291587086 6.600000e-97 364.0
17 TraesCS5D01G039100 chr4D 80.498 482 32 25 679 1138 291578241 291578682 2.420000e-81 313.0
18 TraesCS5D01G039100 chr2D 92.593 81 3 3 1880 1958 64158333 64158412 2.640000e-21 113.0
19 TraesCS5D01G039100 chr2D 87.302 63 8 0 1660 1722 535561645 535561583 4.480000e-09 73.1
20 TraesCS5D01G039100 chr2A 93.421 76 3 2 1880 1954 65653843 65653917 9.490000e-21 111.0
21 TraesCS5D01G039100 chr2B 92.105 76 4 2 1880 1954 100326801 100326875 4.410000e-19 106.0
22 TraesCS5D01G039100 chr1D 93.878 49 3 0 1674 1722 73712791 73712743 1.240000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G039100 chr5D 40181935 40185169 3234 False 5975.00 5975 100.0000 1 3235 1 chr5D.!!$F1 3234
1 TraesCS5D01G039100 chr5B 33555321 33558303 2982 True 664.88 1903 88.3332 6 3235 5 chr5B.!!$R1 3229
2 TraesCS5D01G039100 chr5A 28227339 28230171 2832 False 631.40 1746 88.9920 4 3235 5 chr5A.!!$F2 3231
3 TraesCS5D01G039100 chr7B 719146548 719147799 1251 False 467.05 837 89.6140 1107 2347 2 chr7B.!!$F1 1240
4 TraesCS5D01G039100 chr4D 291586578 291587841 1263 False 475.00 586 81.0215 1137 2518 2 chr4D.!!$F3 1381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 661 0.039256 TAACGCTTGCGTCCGTACTT 60.039 50.0 20.87 6.32 36.56 2.24 F
1037 1070 0.107017 GCCATGCAGGTACACCATCT 60.107 55.0 0.00 0.00 40.61 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1649 1774 0.234884 CGTCGCTTGACCTTGGTTTC 59.765 55.0 0.00 0.0 39.56 2.78 R
2748 3133 0.033503 TCATACCGGGAGAGCAGTCA 60.034 55.0 6.32 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 8.500837 TGCATTGTAAATCGTGAAGTAAAAAG 57.499 30.769 0.00 0.00 0.00 2.27
156 157 8.003784 GCATGAAAGATTTTAAAACAAACGAGG 58.996 33.333 1.97 0.00 0.00 4.63
179 180 1.013596 GCTTGTGTTTTGGGGTTTGC 58.986 50.000 0.00 0.00 0.00 3.68
254 255 7.061441 CAGAATTTGTTGTTGTGCAGATGATAC 59.939 37.037 0.00 0.00 0.00 2.24
263 264 1.280710 TGCAGATGATACCCAACGGTT 59.719 47.619 0.00 0.00 40.58 4.44
275 277 4.320870 ACCCAACGGTTAATAGTGTTCAG 58.679 43.478 0.00 0.00 40.58 3.02
293 295 7.028962 GTGTTCAGATTTGCTATATTTGCACA 58.971 34.615 3.06 0.00 40.40 4.57
296 298 5.887598 TCAGATTTGCTATATTTGCACAGGT 59.112 36.000 3.06 0.00 40.40 4.00
416 421 7.012959 TGGATAGTAACGTATATCTGATCGC 57.987 40.000 12.44 0.00 0.00 4.58
420 425 5.700846 AGTAACGTATATCTGATCGCCTTG 58.299 41.667 0.00 0.00 0.00 3.61
425 430 5.462398 ACGTATATCTGATCGCCTTGAAAAC 59.538 40.000 0.00 0.00 0.00 2.43
437 442 5.025826 CGCCTTGAAAACGGTAATCATAAC 58.974 41.667 0.00 0.00 0.00 1.89
449 454 4.941263 GGTAATCATAACCAGTGAACAGCA 59.059 41.667 0.00 0.00 36.96 4.41
495 503 3.191669 CGTGGATGCCAGTACGATAAAA 58.808 45.455 0.00 0.00 38.72 1.52
540 559 0.815095 CTTGCTGATTGCCATGCTCA 59.185 50.000 0.00 0.00 42.00 4.26
541 560 0.815095 TTGCTGATTGCCATGCTCAG 59.185 50.000 7.89 7.89 42.00 3.35
558 577 4.280425 TGCTCAGCCAACATAAATTGTCAA 59.720 37.500 0.00 0.00 37.68 3.18
588 607 5.070981 TCACTCTCAAATATCATCCTCCCAC 59.929 44.000 0.00 0.00 0.00 4.61
592 611 5.193527 TCTCAAATATCATCCTCCCACCAAA 59.806 40.000 0.00 0.00 0.00 3.28
593 612 5.200483 TCAAATATCATCCTCCCACCAAAC 58.800 41.667 0.00 0.00 0.00 2.93
594 613 3.492102 ATATCATCCTCCCACCAAACG 57.508 47.619 0.00 0.00 0.00 3.60
595 614 0.991920 ATCATCCTCCCACCAAACGT 59.008 50.000 0.00 0.00 0.00 3.99
596 615 0.768622 TCATCCTCCCACCAAACGTT 59.231 50.000 0.00 0.00 0.00 3.99
597 616 1.144093 TCATCCTCCCACCAAACGTTT 59.856 47.619 7.96 7.96 0.00 3.60
598 617 2.372504 TCATCCTCCCACCAAACGTTTA 59.627 45.455 14.20 0.00 0.00 2.01
599 618 3.009695 TCATCCTCCCACCAAACGTTTAT 59.990 43.478 14.20 1.88 0.00 1.40
600 619 4.225492 TCATCCTCCCACCAAACGTTTATA 59.775 41.667 14.20 0.00 0.00 0.98
601 620 4.210724 TCCTCCCACCAAACGTTTATAG 57.789 45.455 14.20 8.19 0.00 1.31
604 623 2.026075 TCCCACCAAACGTTTATAGGGG 60.026 50.000 28.86 26.08 35.74 4.79
605 624 2.291089 CCCACCAAACGTTTATAGGGGT 60.291 50.000 25.08 19.71 0.00 4.95
606 625 2.750712 CCACCAAACGTTTATAGGGGTG 59.249 50.000 27.92 27.92 42.95 4.61
607 626 3.559597 CCACCAAACGTTTATAGGGGTGA 60.560 47.826 32.75 0.00 45.42 4.02
609 628 3.328637 ACCAAACGTTTATAGGGGTGAGT 59.671 43.478 14.20 0.00 0.00 3.41
610 629 3.687698 CCAAACGTTTATAGGGGTGAGTG 59.312 47.826 14.20 0.00 0.00 3.51
611 630 4.320870 CAAACGTTTATAGGGGTGAGTGT 58.679 43.478 14.20 0.00 0.00 3.55
612 631 5.481105 CAAACGTTTATAGGGGTGAGTGTA 58.519 41.667 14.20 0.00 0.00 2.90
613 632 5.945144 AACGTTTATAGGGGTGAGTGTAT 57.055 39.130 0.00 0.00 0.00 2.29
614 633 7.267128 CAAACGTTTATAGGGGTGAGTGTATA 58.733 38.462 14.20 0.00 0.00 1.47
615 634 6.396829 ACGTTTATAGGGGTGAGTGTATAC 57.603 41.667 0.00 0.00 0.00 1.47
616 635 5.009010 ACGTTTATAGGGGTGAGTGTATACG 59.991 44.000 0.00 0.00 0.00 3.06
617 636 5.009010 CGTTTATAGGGGTGAGTGTATACGT 59.991 44.000 0.00 0.00 0.00 3.57
618 637 6.211515 GTTTATAGGGGTGAGTGTATACGTG 58.788 44.000 0.00 0.00 0.00 4.49
619 638 2.226962 AGGGGTGAGTGTATACGTGT 57.773 50.000 0.00 0.00 0.00 4.49
620 639 3.370840 AGGGGTGAGTGTATACGTGTA 57.629 47.619 0.00 0.00 0.00 2.90
621 640 3.907221 AGGGGTGAGTGTATACGTGTAT 58.093 45.455 0.00 0.00 0.00 2.29
622 641 3.635373 AGGGGTGAGTGTATACGTGTATG 59.365 47.826 0.00 0.00 0.00 2.39
623 642 3.382546 GGGGTGAGTGTATACGTGTATGT 59.617 47.826 0.00 0.00 0.00 2.29
624 643 4.580167 GGGGTGAGTGTATACGTGTATGTA 59.420 45.833 0.00 0.00 0.00 2.29
625 644 5.067674 GGGGTGAGTGTATACGTGTATGTAA 59.932 44.000 0.00 0.00 0.00 2.41
626 645 5.973565 GGGTGAGTGTATACGTGTATGTAAC 59.026 44.000 0.00 0.00 0.00 2.50
627 646 5.678483 GGTGAGTGTATACGTGTATGTAACG 59.322 44.000 0.00 0.00 46.32 3.18
628 647 5.170270 GTGAGTGTATACGTGTATGTAACGC 59.830 44.000 0.00 0.00 44.80 4.84
629 648 5.065090 TGAGTGTATACGTGTATGTAACGCT 59.935 40.000 0.00 0.00 44.80 5.07
630 649 5.883661 AGTGTATACGTGTATGTAACGCTT 58.116 37.500 0.00 0.00 44.80 4.68
631 650 5.740569 AGTGTATACGTGTATGTAACGCTTG 59.259 40.000 0.00 0.00 44.80 4.01
632 651 4.500117 TGTATACGTGTATGTAACGCTTGC 59.500 41.667 0.00 0.00 44.80 4.01
633 652 0.711670 ACGTGTATGTAACGCTTGCG 59.288 50.000 13.70 13.70 44.80 4.85
634 653 0.711670 CGTGTATGTAACGCTTGCGT 59.288 50.000 15.19 15.19 36.40 5.24
635 654 1.266211 CGTGTATGTAACGCTTGCGTC 60.266 52.381 20.87 10.19 36.40 5.19
636 655 1.060122 GTGTATGTAACGCTTGCGTCC 59.940 52.381 20.87 14.48 35.62 4.79
637 656 0.296642 GTATGTAACGCTTGCGTCCG 59.703 55.000 20.87 0.00 0.00 4.79
638 657 0.109179 TATGTAACGCTTGCGTCCGT 60.109 50.000 20.87 16.67 39.70 4.69
639 658 0.109179 ATGTAACGCTTGCGTCCGTA 60.109 50.000 20.87 7.47 36.56 4.02
640 659 1.003262 TGTAACGCTTGCGTCCGTAC 61.003 55.000 20.87 18.35 36.56 3.67
641 660 0.730494 GTAACGCTTGCGTCCGTACT 60.730 55.000 20.87 7.03 36.56 2.73
642 661 0.039256 TAACGCTTGCGTCCGTACTT 60.039 50.000 20.87 6.32 36.56 2.24
643 662 0.877213 AACGCTTGCGTCCGTACTTT 60.877 50.000 20.87 0.00 36.56 2.66
644 663 1.129809 CGCTTGCGTCCGTACTTTG 59.870 57.895 6.86 0.00 0.00 2.77
645 664 1.554042 CGCTTGCGTCCGTACTTTGT 61.554 55.000 6.86 0.00 0.00 2.83
646 665 0.584876 GCTTGCGTCCGTACTTTGTT 59.415 50.000 0.00 0.00 0.00 2.83
647 666 1.794116 GCTTGCGTCCGTACTTTGTTA 59.206 47.619 0.00 0.00 0.00 2.41
648 667 2.221517 GCTTGCGTCCGTACTTTGTTAA 59.778 45.455 0.00 0.00 0.00 2.01
649 668 3.303263 GCTTGCGTCCGTACTTTGTTAAA 60.303 43.478 0.00 0.00 0.00 1.52
650 669 4.785975 GCTTGCGTCCGTACTTTGTTAAAA 60.786 41.667 0.00 0.00 0.00 1.52
651 670 4.871993 TGCGTCCGTACTTTGTTAAAAA 57.128 36.364 0.00 0.00 0.00 1.94
669 688 2.399396 AAAACATGAACGAAGCCACG 57.601 45.000 0.00 0.00 39.31 4.94
670 689 0.591170 AAACATGAACGAAGCCACGG 59.409 50.000 0.00 0.00 37.61 4.94
671 690 1.234615 AACATGAACGAAGCCACGGG 61.235 55.000 0.00 0.00 37.61 5.28
697 716 3.869832 GGCAGGTACCGTAGAATTCTTTC 59.130 47.826 14.36 6.76 0.00 2.62
701 720 4.460382 AGGTACCGTAGAATTCTTTCACGA 59.540 41.667 24.13 8.21 37.98 4.35
757 784 2.156446 CGCCGCCTGTGTACTAACG 61.156 63.158 0.00 0.00 0.00 3.18
759 786 0.179119 GCCGCCTGTGTACTAACGAT 60.179 55.000 0.00 0.00 0.00 3.73
760 787 1.066002 GCCGCCTGTGTACTAACGATA 59.934 52.381 0.00 0.00 0.00 2.92
762 789 3.772932 CCGCCTGTGTACTAACGATAAA 58.227 45.455 0.00 0.00 0.00 1.40
809 836 1.893808 GGCCCATATGTCAGTGGCG 60.894 63.158 12.14 0.00 43.09 5.69
902 935 1.986757 AGCGTCCTGAGAGCCACAT 60.987 57.895 0.00 0.00 0.00 3.21
916 949 2.442272 ACATACTCGAGCGCCCCT 60.442 61.111 13.61 0.00 0.00 4.79
950 983 0.955919 CTCCCCAACCAAGAAGCGAC 60.956 60.000 0.00 0.00 0.00 5.19
953 986 0.817634 CCCAACCAAGAAGCGACACA 60.818 55.000 0.00 0.00 0.00 3.72
976 1009 3.791586 GAGCAGTCCCCAGAGGCC 61.792 72.222 0.00 0.00 34.51 5.19
977 1010 4.664267 AGCAGTCCCCAGAGGCCA 62.664 66.667 5.01 0.00 34.51 5.36
978 1011 4.106925 GCAGTCCCCAGAGGCCAG 62.107 72.222 5.01 0.00 34.51 4.85
979 1012 2.284921 CAGTCCCCAGAGGCCAGA 60.285 66.667 5.01 0.00 34.51 3.86
980 1013 2.040278 AGTCCCCAGAGGCCAGAG 59.960 66.667 5.01 0.00 34.51 3.35
1001 1034 3.092511 AGCGCACTCCCATCCCAT 61.093 61.111 11.47 0.00 0.00 4.00
1002 1035 2.903855 GCGCACTCCCATCCCATG 60.904 66.667 0.30 0.00 0.00 3.66
1010 1043 4.935495 CCATCCCATGGCGTCGGG 62.935 72.222 6.09 7.64 44.70 5.14
1013 1046 4.770362 TCCCATGGCGTCGGGAGA 62.770 66.667 6.09 0.00 46.93 3.71
1014 1047 3.781307 CCCATGGCGTCGGGAGAA 61.781 66.667 6.09 0.00 46.34 2.87
1015 1048 2.202932 CCATGGCGTCGGGAGAAG 60.203 66.667 0.00 0.00 42.89 2.85
1022 1055 4.162690 GTCGGGAGAAGCGGCCAT 62.163 66.667 2.24 0.00 42.89 4.40
1023 1056 4.161295 TCGGGAGAAGCGGCCATG 62.161 66.667 2.24 0.00 34.75 3.66
1025 1058 4.802051 GGGAGAAGCGGCCATGCA 62.802 66.667 2.24 0.00 37.31 3.96
1026 1059 3.207669 GGAGAAGCGGCCATGCAG 61.208 66.667 2.24 0.00 37.31 4.41
1027 1060 3.207669 GAGAAGCGGCCATGCAGG 61.208 66.667 2.24 0.00 41.84 4.85
1028 1061 3.984193 GAGAAGCGGCCATGCAGGT 62.984 63.158 2.24 0.00 40.61 4.00
1029 1062 2.124736 GAAGCGGCCATGCAGGTA 60.125 61.111 2.24 0.00 40.61 3.08
1030 1063 2.438434 AAGCGGCCATGCAGGTAC 60.438 61.111 2.24 0.00 40.61 3.34
1031 1064 3.266686 AAGCGGCCATGCAGGTACA 62.267 57.895 2.24 0.00 40.61 2.90
1032 1065 3.508840 GCGGCCATGCAGGTACAC 61.509 66.667 2.24 0.00 40.61 2.90
1033 1066 2.824041 CGGCCATGCAGGTACACC 60.824 66.667 2.24 0.00 40.61 4.16
1034 1067 2.354729 GGCCATGCAGGTACACCA 59.645 61.111 0.00 0.00 40.61 4.17
1035 1068 1.076777 GGCCATGCAGGTACACCAT 60.077 57.895 0.00 0.00 40.61 3.55
1036 1069 1.103398 GGCCATGCAGGTACACCATC 61.103 60.000 0.00 0.00 40.61 3.51
1037 1070 0.107017 GCCATGCAGGTACACCATCT 60.107 55.000 0.00 0.00 40.61 2.90
1038 1071 1.959042 CCATGCAGGTACACCATCTC 58.041 55.000 0.00 0.00 38.89 2.75
1039 1072 1.575244 CATGCAGGTACACCATCTCG 58.425 55.000 0.38 0.00 38.89 4.04
1040 1073 0.179073 ATGCAGGTACACCATCTCGC 60.179 55.000 0.38 0.00 38.89 5.03
1041 1074 1.521681 GCAGGTACACCATCTCGCC 60.522 63.158 0.38 0.00 38.89 5.54
1042 1075 1.144057 CAGGTACACCATCTCGCCC 59.856 63.158 0.38 0.00 38.89 6.13
1043 1076 2.064581 AGGTACACCATCTCGCCCC 61.065 63.158 0.38 0.00 38.89 5.80
1044 1077 2.106332 GTACACCATCTCGCCCCG 59.894 66.667 0.00 0.00 0.00 5.73
1045 1078 2.363276 TACACCATCTCGCCCCGT 60.363 61.111 0.00 0.00 0.00 5.28
1046 1079 1.985662 TACACCATCTCGCCCCGTT 60.986 57.895 0.00 0.00 0.00 4.44
1047 1080 1.546589 TACACCATCTCGCCCCGTTT 61.547 55.000 0.00 0.00 0.00 3.60
1048 1081 2.106683 CACCATCTCGCCCCGTTTC 61.107 63.158 0.00 0.00 0.00 2.78
1049 1082 2.291043 ACCATCTCGCCCCGTTTCT 61.291 57.895 0.00 0.00 0.00 2.52
1050 1083 0.974010 ACCATCTCGCCCCGTTTCTA 60.974 55.000 0.00 0.00 0.00 2.10
1051 1084 0.249489 CCATCTCGCCCCGTTTCTAG 60.249 60.000 0.00 0.00 0.00 2.43
1052 1085 0.876342 CATCTCGCCCCGTTTCTAGC 60.876 60.000 0.00 0.00 0.00 3.42
1053 1086 2.029307 ATCTCGCCCCGTTTCTAGCC 62.029 60.000 0.00 0.00 0.00 3.93
1054 1087 3.735037 CTCGCCCCGTTTCTAGCCC 62.735 68.421 0.00 0.00 0.00 5.19
1055 1088 3.782443 CGCCCCGTTTCTAGCCCT 61.782 66.667 0.00 0.00 0.00 5.19
1056 1089 2.675371 GCCCCGTTTCTAGCCCTT 59.325 61.111 0.00 0.00 0.00 3.95
1057 1090 1.451567 GCCCCGTTTCTAGCCCTTC 60.452 63.158 0.00 0.00 0.00 3.46
1058 1091 1.223763 CCCCGTTTCTAGCCCTTCC 59.776 63.158 0.00 0.00 0.00 3.46
1059 1092 1.153429 CCCGTTTCTAGCCCTTCCG 60.153 63.158 0.00 0.00 0.00 4.30
1060 1093 1.595357 CCGTTTCTAGCCCTTCCGT 59.405 57.895 0.00 0.00 0.00 4.69
1061 1094 0.459759 CCGTTTCTAGCCCTTCCGTC 60.460 60.000 0.00 0.00 0.00 4.79
1062 1095 0.459759 CGTTTCTAGCCCTTCCGTCC 60.460 60.000 0.00 0.00 0.00 4.79
1063 1096 0.611714 GTTTCTAGCCCTTCCGTCCA 59.388 55.000 0.00 0.00 0.00 4.02
1064 1097 1.002773 GTTTCTAGCCCTTCCGTCCAA 59.997 52.381 0.00 0.00 0.00 3.53
1065 1098 0.902531 TTCTAGCCCTTCCGTCCAAG 59.097 55.000 0.00 0.00 0.00 3.61
1066 1099 0.976073 TCTAGCCCTTCCGTCCAAGG 60.976 60.000 0.00 0.00 42.57 3.61
1067 1100 0.976073 CTAGCCCTTCCGTCCAAGGA 60.976 60.000 6.61 0.00 45.41 3.36
1068 1101 0.545787 TAGCCCTTCCGTCCAAGGAA 60.546 55.000 6.61 0.00 45.41 3.36
1075 1108 3.502123 TTCCGTCCAAGGAATTCAGTT 57.498 42.857 7.93 0.00 44.66 3.16
1076 1109 2.778299 TCCGTCCAAGGAATTCAGTTG 58.222 47.619 7.93 9.90 37.36 3.16
1077 1110 2.370519 TCCGTCCAAGGAATTCAGTTGA 59.629 45.455 17.25 2.96 37.36 3.18
1078 1111 2.744202 CCGTCCAAGGAATTCAGTTGAG 59.256 50.000 17.25 9.95 0.00 3.02
1079 1112 3.403038 CGTCCAAGGAATTCAGTTGAGT 58.597 45.455 17.25 0.00 0.00 3.41
1080 1113 3.815401 CGTCCAAGGAATTCAGTTGAGTT 59.185 43.478 17.25 0.00 0.00 3.01
1081 1114 4.319766 CGTCCAAGGAATTCAGTTGAGTTG 60.320 45.833 17.25 5.03 0.00 3.16
1082 1115 3.569701 TCCAAGGAATTCAGTTGAGTTGC 59.430 43.478 17.25 1.53 33.49 4.17
1083 1116 3.318839 CCAAGGAATTCAGTTGAGTTGCA 59.681 43.478 17.25 0.00 35.22 4.08
1084 1117 4.021719 CCAAGGAATTCAGTTGAGTTGCAT 60.022 41.667 17.25 0.00 35.22 3.96
1085 1118 4.778534 AGGAATTCAGTTGAGTTGCATG 57.221 40.909 7.93 0.00 35.22 4.06
1086 1119 3.057033 AGGAATTCAGTTGAGTTGCATGC 60.057 43.478 11.82 11.82 35.22 4.06
1087 1120 3.057033 GGAATTCAGTTGAGTTGCATGCT 60.057 43.478 20.33 0.00 33.52 3.79
1088 1121 3.844577 ATTCAGTTGAGTTGCATGCTC 57.155 42.857 20.33 12.01 0.00 4.26
1089 1122 2.259266 TCAGTTGAGTTGCATGCTCA 57.741 45.000 20.33 11.73 40.76 4.26
1090 1123 2.786777 TCAGTTGAGTTGCATGCTCAT 58.213 42.857 20.33 3.85 41.87 2.90
1091 1124 2.486592 TCAGTTGAGTTGCATGCTCATG 59.513 45.455 20.33 15.13 41.87 3.07
1092 1125 2.228103 CAGTTGAGTTGCATGCTCATGT 59.772 45.455 20.33 8.99 41.87 3.21
1093 1126 2.228103 AGTTGAGTTGCATGCTCATGTG 59.772 45.455 20.33 0.00 41.87 3.21
1094 1127 2.188062 TGAGTTGCATGCTCATGTGA 57.812 45.000 20.33 0.00 40.80 3.58
1095 1128 1.808343 TGAGTTGCATGCTCATGTGAC 59.192 47.619 20.33 9.66 40.80 3.67
1096 1129 1.808343 GAGTTGCATGCTCATGTGACA 59.192 47.619 20.33 0.00 40.80 3.58
1097 1130 2.422479 GAGTTGCATGCTCATGTGACAT 59.578 45.455 20.33 0.00 40.80 3.06
1098 1131 2.823747 AGTTGCATGCTCATGTGACATT 59.176 40.909 20.33 0.00 40.80 2.71
1099 1132 3.119602 AGTTGCATGCTCATGTGACATTC 60.120 43.478 20.33 0.00 40.80 2.67
1100 1133 2.718563 TGCATGCTCATGTGACATTCT 58.281 42.857 20.33 0.00 40.80 2.40
1101 1134 3.086282 TGCATGCTCATGTGACATTCTT 58.914 40.909 20.33 0.00 40.80 2.52
1102 1135 3.508402 TGCATGCTCATGTGACATTCTTT 59.492 39.130 20.33 0.00 40.80 2.52
1103 1136 4.103357 GCATGCTCATGTGACATTCTTTC 58.897 43.478 11.37 0.00 40.80 2.62
1104 1137 4.142447 GCATGCTCATGTGACATTCTTTCT 60.142 41.667 11.37 0.00 40.80 2.52
1242 1276 1.442520 CCGCTGCATTTTCGTGTGG 60.443 57.895 0.00 0.00 0.00 4.17
1257 1291 2.595386 GTGTGGCTTTCGGCTTAATTG 58.405 47.619 0.00 0.00 41.46 2.32
1258 1292 2.227865 GTGTGGCTTTCGGCTTAATTGA 59.772 45.455 0.00 0.00 41.46 2.57
1259 1293 2.227865 TGTGGCTTTCGGCTTAATTGAC 59.772 45.455 0.00 0.00 41.46 3.18
1260 1294 2.488153 GTGGCTTTCGGCTTAATTGACT 59.512 45.455 0.00 0.00 41.46 3.41
1322 1366 0.601558 TGCAGGACGTGAAGGTAGAC 59.398 55.000 0.00 0.00 0.00 2.59
1558 1653 4.467232 CGACAGCTCGGACAAGAG 57.533 61.111 0.00 0.00 41.03 2.85
1633 1755 3.533547 CAGAATCTGAGAAGAAGGCTGG 58.466 50.000 3.77 0.00 32.44 4.85
1649 1774 4.168291 GGCAAGGAGGAGGAGGCG 62.168 72.222 0.00 0.00 0.00 5.52
1654 1779 1.554583 AAGGAGGAGGAGGCGAAACC 61.555 60.000 0.00 0.00 39.61 3.27
1655 1780 2.291043 GGAGGAGGAGGCGAAACCA 61.291 63.158 0.00 0.00 43.14 3.67
1656 1781 1.677552 GAGGAGGAGGCGAAACCAA 59.322 57.895 0.00 0.00 43.14 3.67
1657 1782 0.391793 GAGGAGGAGGCGAAACCAAG 60.392 60.000 0.00 0.00 43.14 3.61
1658 1783 1.377333 GGAGGAGGCGAAACCAAGG 60.377 63.158 0.00 0.00 43.14 3.61
1659 1784 1.375326 GAGGAGGCGAAACCAAGGT 59.625 57.895 0.00 0.00 43.14 3.50
1672 1797 1.289066 CAAGGTCAAGCGACGAGGA 59.711 57.895 0.00 0.00 43.61 3.71
1772 1915 2.746375 AAAGGAGGCCGGCGATGAT 61.746 57.895 22.54 3.21 0.00 2.45
1831 2007 3.872431 CGATAGGTCCCTGTCCCC 58.128 66.667 4.70 0.00 31.66 4.81
1832 2008 1.075525 CGATAGGTCCCTGTCCCCA 60.076 63.158 4.70 0.00 31.66 4.96
1833 2009 1.115930 CGATAGGTCCCTGTCCCCAG 61.116 65.000 4.70 0.00 38.50 4.45
1834 2010 1.384643 ATAGGTCCCTGTCCCCAGC 60.385 63.158 0.00 0.00 37.38 4.85
1835 2011 3.976490 TAGGTCCCTGTCCCCAGCG 62.976 68.421 0.00 0.00 37.38 5.18
1993 2196 2.011044 AGGCCGGGTACTCCTCCTA 61.011 63.158 2.18 0.00 35.37 2.94
2236 2454 1.059838 CGTGCAGCGTCATGTGATG 59.940 57.895 0.00 0.00 35.54 3.07
2347 2619 1.827969 ACTCTCTTCGATTGGGAGGTG 59.172 52.381 16.79 8.25 0.00 4.00
2348 2620 1.137872 CTCTCTTCGATTGGGAGGTGG 59.862 57.143 7.67 0.00 0.00 4.61
2349 2621 0.905357 CTCTTCGATTGGGAGGTGGT 59.095 55.000 0.00 0.00 0.00 4.16
2474 2754 8.997621 TTGTAATGAGACCTTTACATGTAGAC 57.002 34.615 5.56 0.00 40.38 2.59
2475 2755 8.129496 TGTAATGAGACCTTTACATGTAGACA 57.871 34.615 5.56 0.00 37.73 3.41
2476 2756 8.758829 TGTAATGAGACCTTTACATGTAGACAT 58.241 33.333 5.56 0.00 37.73 3.06
2501 2784 4.880759 AGTAGCATCAATGAGATCTTCCG 58.119 43.478 0.00 0.00 33.72 4.30
2638 3023 2.364002 TGCTCCAATCCAATCATGCATG 59.636 45.455 21.07 21.07 0.00 4.06
2639 3024 2.364324 GCTCCAATCCAATCATGCATGT 59.636 45.455 25.43 10.91 0.00 3.21
2640 3025 3.552273 GCTCCAATCCAATCATGCATGTC 60.552 47.826 25.43 0.00 0.00 3.06
2641 3026 2.960384 TCCAATCCAATCATGCATGTCC 59.040 45.455 25.43 0.00 0.00 4.02
2694 3079 3.282271 CTCGTGAGCAGCCTCTCA 58.718 61.111 1.75 1.75 40.50 3.27
2698 3083 3.890313 TGAGCAGCCTCTCACCAA 58.110 55.556 1.75 0.00 38.11 3.67
2699 3084 2.144952 TGAGCAGCCTCTCACCAAA 58.855 52.632 1.75 0.00 38.11 3.28
2700 3085 0.473755 TGAGCAGCCTCTCACCAAAA 59.526 50.000 1.75 0.00 38.11 2.44
2701 3086 1.163554 GAGCAGCCTCTCACCAAAAG 58.836 55.000 0.00 0.00 35.16 2.27
2702 3087 0.892814 AGCAGCCTCTCACCAAAAGC 60.893 55.000 0.00 0.00 0.00 3.51
2703 3088 0.892814 GCAGCCTCTCACCAAAAGCT 60.893 55.000 0.00 0.00 0.00 3.74
2704 3089 1.613836 CAGCCTCTCACCAAAAGCTT 58.386 50.000 0.00 0.00 0.00 3.74
2705 3090 1.268899 CAGCCTCTCACCAAAAGCTTG 59.731 52.381 0.00 0.00 0.00 4.01
2706 3091 1.133668 AGCCTCTCACCAAAAGCTTGT 60.134 47.619 0.00 0.00 0.00 3.16
2707 3092 1.683385 GCCTCTCACCAAAAGCTTGTT 59.317 47.619 0.00 0.00 0.00 2.83
2708 3093 2.544486 GCCTCTCACCAAAAGCTTGTTG 60.544 50.000 0.00 7.04 0.00 3.33
2709 3094 2.689983 CCTCTCACCAAAAGCTTGTTGT 59.310 45.455 0.00 0.00 0.00 3.32
2710 3095 3.489738 CCTCTCACCAAAAGCTTGTTGTG 60.490 47.826 13.50 13.50 0.00 3.33
2711 3096 3.351740 TCTCACCAAAAGCTTGTTGTGA 58.648 40.909 19.50 19.50 34.52 3.58
2712 3097 3.128589 TCTCACCAAAAGCTTGTTGTGAC 59.871 43.478 17.40 0.00 33.13 3.67
2713 3098 3.088532 TCACCAAAAGCTTGTTGTGACT 58.911 40.909 17.40 0.00 32.25 3.41
2714 3099 3.128589 TCACCAAAAGCTTGTTGTGACTC 59.871 43.478 17.40 0.00 32.25 3.36
2715 3100 3.129287 CACCAAAAGCTTGTTGTGACTCT 59.871 43.478 14.33 0.00 30.48 3.24
2716 3101 3.763897 ACCAAAAGCTTGTTGTGACTCTT 59.236 39.130 0.00 0.00 0.00 2.85
2717 3102 4.220602 ACCAAAAGCTTGTTGTGACTCTTT 59.779 37.500 0.00 0.00 0.00 2.52
2718 3103 5.417580 ACCAAAAGCTTGTTGTGACTCTTTA 59.582 36.000 0.00 0.00 0.00 1.85
2719 3104 6.071616 ACCAAAAGCTTGTTGTGACTCTTTAA 60.072 34.615 0.00 0.00 0.00 1.52
2720 3105 6.473455 CCAAAAGCTTGTTGTGACTCTTTAAG 59.527 38.462 0.00 0.00 0.00 1.85
2721 3106 6.759497 AAAGCTTGTTGTGACTCTTTAAGT 57.241 33.333 0.00 0.00 42.42 2.24
2722 3107 7.859325 AAAGCTTGTTGTGACTCTTTAAGTA 57.141 32.000 0.00 0.00 38.74 2.24
2723 3108 7.859325 AAGCTTGTTGTGACTCTTTAAGTAA 57.141 32.000 0.00 0.00 38.74 2.24
2724 3109 8.451908 AAGCTTGTTGTGACTCTTTAAGTAAT 57.548 30.769 0.00 0.00 38.74 1.89
2725 3110 9.555727 AAGCTTGTTGTGACTCTTTAAGTAATA 57.444 29.630 0.00 0.00 38.74 0.98
2726 3111 9.726438 AGCTTGTTGTGACTCTTTAAGTAATAT 57.274 29.630 0.00 0.00 38.74 1.28
2762 3147 1.826385 AAAAATGACTGCTCTCCCGG 58.174 50.000 0.00 0.00 0.00 5.73
2763 3148 0.693049 AAAATGACTGCTCTCCCGGT 59.307 50.000 0.00 0.00 0.00 5.28
2764 3149 1.568504 AAATGACTGCTCTCCCGGTA 58.431 50.000 0.00 0.00 0.00 4.02
2765 3150 1.794714 AATGACTGCTCTCCCGGTAT 58.205 50.000 0.00 0.00 0.00 2.73
2766 3151 1.043816 ATGACTGCTCTCCCGGTATG 58.956 55.000 0.00 0.00 0.00 2.39
2767 3152 0.033503 TGACTGCTCTCCCGGTATGA 60.034 55.000 0.00 0.00 0.00 2.15
2768 3153 1.333177 GACTGCTCTCCCGGTATGAT 58.667 55.000 0.00 0.00 0.00 2.45
2769 3154 1.689273 GACTGCTCTCCCGGTATGATT 59.311 52.381 0.00 0.00 0.00 2.57
2770 3155 1.414181 ACTGCTCTCCCGGTATGATTG 59.586 52.381 0.00 0.00 0.00 2.67
2771 3156 1.688735 CTGCTCTCCCGGTATGATTGA 59.311 52.381 0.00 0.00 0.00 2.57
2772 3157 2.301296 CTGCTCTCCCGGTATGATTGAT 59.699 50.000 0.00 0.00 0.00 2.57
2773 3158 2.705658 TGCTCTCCCGGTATGATTGATT 59.294 45.455 0.00 0.00 0.00 2.57
2774 3159 3.244215 TGCTCTCCCGGTATGATTGATTC 60.244 47.826 0.00 0.00 0.00 2.52
2775 3160 3.007398 GCTCTCCCGGTATGATTGATTCT 59.993 47.826 0.00 0.00 0.00 2.40
2776 3161 4.503991 GCTCTCCCGGTATGATTGATTCTT 60.504 45.833 0.00 0.00 0.00 2.52
2777 3162 5.279506 GCTCTCCCGGTATGATTGATTCTTA 60.280 44.000 0.00 0.00 0.00 2.10
2778 3163 6.575254 GCTCTCCCGGTATGATTGATTCTTAT 60.575 42.308 0.00 0.00 0.00 1.73
2779 3164 6.936279 TCTCCCGGTATGATTGATTCTTATC 58.064 40.000 0.00 0.00 0.00 1.75
2780 3165 6.496911 TCTCCCGGTATGATTGATTCTTATCA 59.503 38.462 0.00 5.06 39.00 2.15
2790 3175 3.631250 TGATTCTTATCAAACAGGGGCC 58.369 45.455 0.00 0.00 37.83 5.80
2791 3176 3.011144 TGATTCTTATCAAACAGGGGCCA 59.989 43.478 4.39 0.00 37.83 5.36
2792 3177 3.534357 TTCTTATCAAACAGGGGCCAA 57.466 42.857 4.39 0.00 0.00 4.52
2793 3178 3.756082 TCTTATCAAACAGGGGCCAAT 57.244 42.857 4.39 0.00 0.00 3.16
2794 3179 4.059773 TCTTATCAAACAGGGGCCAATT 57.940 40.909 4.39 0.00 0.00 2.32
2795 3180 5.199982 TCTTATCAAACAGGGGCCAATTA 57.800 39.130 4.39 0.00 0.00 1.40
2796 3181 5.584913 TCTTATCAAACAGGGGCCAATTAA 58.415 37.500 4.39 0.00 0.00 1.40
2797 3182 5.656416 TCTTATCAAACAGGGGCCAATTAAG 59.344 40.000 4.39 1.36 0.00 1.85
2798 3183 1.899142 TCAAACAGGGGCCAATTAAGC 59.101 47.619 4.39 0.00 0.00 3.09
2804 3189 3.293702 GGCCAATTAAGCCGCCAA 58.706 55.556 0.00 0.00 41.41 4.52
2805 3190 1.153647 GGCCAATTAAGCCGCCAAC 60.154 57.895 0.00 0.00 41.41 3.77
2806 3191 1.604147 GGCCAATTAAGCCGCCAACT 61.604 55.000 0.00 0.00 41.41 3.16
2807 3192 0.179137 GCCAATTAAGCCGCCAACTC 60.179 55.000 0.00 0.00 0.00 3.01
2808 3193 1.463674 CCAATTAAGCCGCCAACTCT 58.536 50.000 0.00 0.00 0.00 3.24
2809 3194 1.818674 CCAATTAAGCCGCCAACTCTT 59.181 47.619 0.00 0.00 0.00 2.85
2810 3195 3.013921 CCAATTAAGCCGCCAACTCTTA 58.986 45.455 0.00 0.00 0.00 2.10
2811 3196 3.181500 CCAATTAAGCCGCCAACTCTTAC 60.181 47.826 0.00 0.00 0.00 2.34
2812 3197 2.843401 TTAAGCCGCCAACTCTTACA 57.157 45.000 0.00 0.00 0.00 2.41
2813 3198 2.843401 TAAGCCGCCAACTCTTACAA 57.157 45.000 0.00 0.00 0.00 2.41
2814 3199 2.200373 AAGCCGCCAACTCTTACAAT 57.800 45.000 0.00 0.00 0.00 2.71
2815 3200 1.453155 AGCCGCCAACTCTTACAATG 58.547 50.000 0.00 0.00 0.00 2.82
2816 3201 1.003118 AGCCGCCAACTCTTACAATGA 59.997 47.619 0.00 0.00 0.00 2.57
2817 3202 1.130561 GCCGCCAACTCTTACAATGAC 59.869 52.381 0.00 0.00 0.00 3.06
2818 3203 2.422597 CCGCCAACTCTTACAATGACA 58.577 47.619 0.00 0.00 0.00 3.58
2819 3204 2.416547 CCGCCAACTCTTACAATGACAG 59.583 50.000 0.00 0.00 0.00 3.51
2820 3205 2.159653 CGCCAACTCTTACAATGACAGC 60.160 50.000 0.00 0.00 0.00 4.40
2821 3206 2.813754 GCCAACTCTTACAATGACAGCA 59.186 45.455 0.00 0.00 0.00 4.41
2822 3207 3.253188 GCCAACTCTTACAATGACAGCAA 59.747 43.478 0.00 0.00 0.00 3.91
2823 3208 4.261572 GCCAACTCTTACAATGACAGCAAA 60.262 41.667 0.00 0.00 0.00 3.68
2824 3209 5.565439 GCCAACTCTTACAATGACAGCAAAT 60.565 40.000 0.00 0.00 0.00 2.32
2825 3210 5.860182 CCAACTCTTACAATGACAGCAAATG 59.140 40.000 0.00 0.00 0.00 2.32
2826 3211 5.633830 ACTCTTACAATGACAGCAAATGG 57.366 39.130 0.00 0.00 0.00 3.16
2827 3212 4.460382 ACTCTTACAATGACAGCAAATGGG 59.540 41.667 0.00 0.00 0.00 4.00
2828 3213 4.661222 TCTTACAATGACAGCAAATGGGA 58.339 39.130 0.00 0.00 0.00 4.37
2829 3214 4.458989 TCTTACAATGACAGCAAATGGGAC 59.541 41.667 0.00 0.00 0.00 4.46
2830 3215 1.895131 ACAATGACAGCAAATGGGACC 59.105 47.619 0.00 0.00 0.00 4.46
2831 3216 2.173519 CAATGACAGCAAATGGGACCT 58.826 47.619 0.00 0.00 0.00 3.85
2832 3217 2.564062 CAATGACAGCAAATGGGACCTT 59.436 45.455 0.00 0.00 0.00 3.50
2833 3218 3.737559 ATGACAGCAAATGGGACCTTA 57.262 42.857 0.00 0.00 0.00 2.69
2834 3219 2.790433 TGACAGCAAATGGGACCTTAC 58.210 47.619 0.00 0.00 0.00 2.34
2835 3220 2.092323 GACAGCAAATGGGACCTTACC 58.908 52.381 0.00 0.00 0.00 2.85
2836 3221 1.094785 CAGCAAATGGGACCTTACCG 58.905 55.000 0.00 0.00 0.00 4.02
2837 3222 0.988832 AGCAAATGGGACCTTACCGA 59.011 50.000 0.00 0.00 0.00 4.69
2838 3223 1.353022 AGCAAATGGGACCTTACCGAA 59.647 47.619 0.00 0.00 0.00 4.30
2839 3224 1.743394 GCAAATGGGACCTTACCGAAG 59.257 52.381 0.00 0.00 0.00 3.79
2840 3225 1.743394 CAAATGGGACCTTACCGAAGC 59.257 52.381 0.00 0.00 0.00 3.86
2841 3226 0.255033 AATGGGACCTTACCGAAGCC 59.745 55.000 0.00 0.00 0.00 4.35
2842 3227 1.968050 ATGGGACCTTACCGAAGCCG 61.968 60.000 0.00 0.00 0.00 5.52
2843 3228 2.653087 GGGACCTTACCGAAGCCGT 61.653 63.158 0.00 0.00 0.00 5.68
2844 3229 1.322538 GGGACCTTACCGAAGCCGTA 61.323 60.000 0.00 0.00 0.00 4.02
2845 3230 0.101939 GGACCTTACCGAAGCCGTAG 59.898 60.000 0.00 0.00 0.00 3.51
2846 3231 0.813821 GACCTTACCGAAGCCGTAGT 59.186 55.000 0.00 0.00 0.00 2.73
2847 3232 0.813821 ACCTTACCGAAGCCGTAGTC 59.186 55.000 0.00 0.00 0.00 2.59
2848 3233 0.101939 CCTTACCGAAGCCGTAGTCC 59.898 60.000 0.00 0.00 0.00 3.85
2849 3234 0.248377 CTTACCGAAGCCGTAGTCCG 60.248 60.000 0.00 0.00 0.00 4.79
2850 3235 0.960364 TTACCGAAGCCGTAGTCCGT 60.960 55.000 0.00 0.00 33.66 4.69
2851 3236 0.107897 TACCGAAGCCGTAGTCCGTA 60.108 55.000 0.00 0.00 33.66 4.02
2852 3237 1.354506 CCGAAGCCGTAGTCCGTAG 59.645 63.158 0.00 0.00 33.66 3.51
2853 3238 1.091771 CCGAAGCCGTAGTCCGTAGA 61.092 60.000 0.00 0.00 33.66 2.59
2854 3239 0.942962 CGAAGCCGTAGTCCGTAGAT 59.057 55.000 0.00 0.00 33.66 1.98
2855 3240 1.332997 CGAAGCCGTAGTCCGTAGATT 59.667 52.381 0.00 0.00 33.66 2.40
2856 3241 2.223433 CGAAGCCGTAGTCCGTAGATTT 60.223 50.000 0.00 0.00 33.66 2.17
2857 3242 3.002656 CGAAGCCGTAGTCCGTAGATTTA 59.997 47.826 0.00 0.00 33.66 1.40
2858 3243 3.978718 AGCCGTAGTCCGTAGATTTAC 57.021 47.619 0.00 0.00 33.66 2.01
2859 3244 3.549794 AGCCGTAGTCCGTAGATTTACT 58.450 45.455 0.00 0.00 33.66 2.24
2860 3245 3.563390 AGCCGTAGTCCGTAGATTTACTC 59.437 47.826 0.00 0.00 33.66 2.59
2861 3246 3.563390 GCCGTAGTCCGTAGATTTACTCT 59.437 47.826 0.00 0.00 38.06 3.24
2862 3247 4.036144 GCCGTAGTCCGTAGATTTACTCTT 59.964 45.833 0.00 0.00 35.28 2.85
2863 3248 5.449725 GCCGTAGTCCGTAGATTTACTCTTT 60.450 44.000 0.00 0.00 35.28 2.52
2864 3249 6.238484 GCCGTAGTCCGTAGATTTACTCTTTA 60.238 42.308 0.00 0.00 35.28 1.85
2865 3250 7.351223 CCGTAGTCCGTAGATTTACTCTTTAG 58.649 42.308 0.00 0.00 35.28 1.85
2866 3251 7.225538 CCGTAGTCCGTAGATTTACTCTTTAGA 59.774 40.741 0.00 0.00 35.28 2.10
2867 3252 8.772705 CGTAGTCCGTAGATTTACTCTTTAGAT 58.227 37.037 0.00 0.00 35.28 1.98
2873 3258 9.896263 CCGTAGATTTACTCTTTAGATAACTCC 57.104 37.037 0.00 0.00 35.28 3.85
2874 3259 9.896263 CGTAGATTTACTCTTTAGATAACTCCC 57.104 37.037 0.00 0.00 35.28 4.30
2876 3261 7.953752 AGATTTACTCTTTAGATAACTCCCCG 58.046 38.462 0.00 0.00 0.00 5.73
2903 3367 1.417890 CGATAAGGCCCAATCACCTCT 59.582 52.381 13.74 0.00 34.31 3.69
3017 3547 2.498056 CCAAGCTGGCCGGTTTGTT 61.498 57.895 31.79 11.60 0.00 2.83
3094 3629 7.569226 CGGTTTGTTTGAAGGCTTTTGAATATG 60.569 37.037 0.00 0.00 0.00 1.78
3114 3650 2.133641 GCAAGGGGGTTGTGCTTGT 61.134 57.895 0.00 0.00 38.55 3.16
3132 3668 6.089820 GTGCTTGTCCACATGTTAATGATTTG 59.910 38.462 0.00 0.00 37.24 2.32
3133 3669 6.015603 TGCTTGTCCACATGTTAATGATTTGA 60.016 34.615 0.00 0.00 37.24 2.69
3134 3670 7.037438 GCTTGTCCACATGTTAATGATTTGAT 58.963 34.615 0.00 0.00 37.24 2.57
3135 3671 7.546667 GCTTGTCCACATGTTAATGATTTGATT 59.453 33.333 0.00 0.00 37.24 2.57
3136 3672 9.426837 CTTGTCCACATGTTAATGATTTGATTT 57.573 29.630 0.00 0.00 37.24 2.17
3138 3674 9.853555 TGTCCACATGTTAATGATTTGATTTAC 57.146 29.630 0.00 0.00 37.24 2.01
3139 3675 9.301153 GTCCACATGTTAATGATTTGATTTACC 57.699 33.333 0.00 0.00 37.24 2.85
3140 3676 8.474025 TCCACATGTTAATGATTTGATTTACCC 58.526 33.333 0.00 0.00 37.24 3.69
3141 3677 7.710475 CCACATGTTAATGATTTGATTTACCCC 59.290 37.037 0.00 0.00 37.24 4.95
3142 3678 8.477256 CACATGTTAATGATTTGATTTACCCCT 58.523 33.333 0.00 0.00 37.24 4.79
3143 3679 8.477256 ACATGTTAATGATTTGATTTACCCCTG 58.523 33.333 0.00 0.00 37.24 4.45
3144 3680 6.872920 TGTTAATGATTTGATTTACCCCTGC 58.127 36.000 0.00 0.00 0.00 4.85
3145 3681 6.438741 TGTTAATGATTTGATTTACCCCTGCA 59.561 34.615 0.00 0.00 0.00 4.41
3146 3682 7.125507 TGTTAATGATTTGATTTACCCCTGCAT 59.874 33.333 0.00 0.00 0.00 3.96
3187 3730 8.196771 GCTTGGGTGATCATGTATGATTTAAAA 58.803 33.333 8.62 1.52 46.84 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.313118 TCTTCTTTGTTTTAGAATTTTTCAGGC 57.687 29.630 0.00 0.00 31.66 4.85
84 85 7.642669 TCTTCTGAATGAAATGACACACTTTC 58.357 34.615 0.00 0.00 33.79 2.62
89 90 7.806409 TTTCTCTTCTGAATGAAATGACACA 57.194 32.000 11.87 0.00 33.79 3.72
145 146 3.130340 ACACAAGCATTCCTCGTTTGTTT 59.870 39.130 0.00 0.00 35.89 2.83
156 157 2.908688 ACCCCAAAACACAAGCATTC 57.091 45.000 0.00 0.00 0.00 2.67
179 180 5.885230 TGGTTGAGCTTAATCACAATGAG 57.115 39.130 0.00 0.00 0.00 2.90
215 216 5.880054 ACAAATTCTGCCACATGTACTAC 57.120 39.130 0.00 0.00 0.00 2.73
254 255 4.571919 TCTGAACACTATTAACCGTTGGG 58.428 43.478 0.00 0.00 40.11 4.12
275 277 7.496529 TCTACCTGTGCAAATATAGCAAATC 57.503 36.000 4.51 0.00 44.64 2.17
293 295 4.228210 TCTTTGGATGAAGCCAATCTACCT 59.772 41.667 0.04 0.00 46.59 3.08
296 298 4.018506 TGGTCTTTGGATGAAGCCAATCTA 60.019 41.667 0.04 0.00 46.59 1.98
338 343 8.451908 AATAATTTTACATCACTCTGTAGCCC 57.548 34.615 0.00 0.00 33.38 5.19
403 408 5.107453 CCGTTTTCAAGGCGATCAGATATAC 60.107 44.000 0.00 0.00 0.00 1.47
411 416 3.372822 TGATTACCGTTTTCAAGGCGATC 59.627 43.478 0.00 0.00 0.00 3.69
413 418 2.768698 TGATTACCGTTTTCAAGGCGA 58.231 42.857 0.00 0.00 0.00 5.54
416 421 6.150474 ACTGGTTATGATTACCGTTTTCAAGG 59.850 38.462 0.00 0.00 38.55 3.61
420 425 6.730960 TCACTGGTTATGATTACCGTTTTC 57.269 37.500 0.00 0.00 38.55 2.29
425 430 4.034048 GCTGTTCACTGGTTATGATTACCG 59.966 45.833 0.00 0.00 38.55 4.02
437 442 3.581755 CCATCAAAATGCTGTTCACTGG 58.418 45.455 0.00 0.00 0.00 4.00
449 454 6.751888 GCGATAACTAAAGTTGCCATCAAAAT 59.248 34.615 5.62 0.00 38.90 1.82
495 503 4.984161 CGGCAACTCTGTTTTTCATCAAAT 59.016 37.500 0.00 0.00 0.00 2.32
540 559 7.714377 TGATTTTGTTGACAATTTATGTTGGCT 59.286 29.630 0.00 0.00 44.12 4.75
541 560 7.798052 GTGATTTTGTTGACAATTTATGTTGGC 59.202 33.333 0.00 0.00 44.12 4.52
558 577 9.118300 GAGGATGATATTTGAGAGTGATTTTGT 57.882 33.333 0.00 0.00 0.00 2.83
588 607 3.687698 CACTCACCCCTATAAACGTTTGG 59.312 47.826 23.46 16.97 0.00 3.28
592 611 5.009010 CGTATACACTCACCCCTATAAACGT 59.991 44.000 3.32 0.00 0.00 3.99
593 612 5.009010 ACGTATACACTCACCCCTATAAACG 59.991 44.000 3.32 0.00 0.00 3.60
594 613 6.183360 ACACGTATACACTCACCCCTATAAAC 60.183 42.308 3.32 0.00 0.00 2.01
595 614 5.893255 ACACGTATACACTCACCCCTATAAA 59.107 40.000 3.32 0.00 0.00 1.40
596 615 5.448654 ACACGTATACACTCACCCCTATAA 58.551 41.667 3.32 0.00 0.00 0.98
597 616 5.052693 ACACGTATACACTCACCCCTATA 57.947 43.478 3.32 0.00 0.00 1.31
598 617 3.907221 ACACGTATACACTCACCCCTAT 58.093 45.455 3.32 0.00 0.00 2.57
599 618 3.370840 ACACGTATACACTCACCCCTA 57.629 47.619 3.32 0.00 0.00 3.53
600 619 2.226962 ACACGTATACACTCACCCCT 57.773 50.000 3.32 0.00 0.00 4.79
601 620 3.382546 ACATACACGTATACACTCACCCC 59.617 47.826 3.32 0.00 0.00 4.95
604 623 5.170270 GCGTTACATACACGTATACACTCAC 59.830 44.000 3.32 0.00 39.92 3.51
605 624 5.065090 AGCGTTACATACACGTATACACTCA 59.935 40.000 3.32 0.00 39.92 3.41
606 625 5.505286 AGCGTTACATACACGTATACACTC 58.495 41.667 3.32 0.00 39.92 3.51
607 626 5.490139 AGCGTTACATACACGTATACACT 57.510 39.130 3.32 0.00 39.92 3.55
609 628 4.500117 GCAAGCGTTACATACACGTATACA 59.500 41.667 3.32 0.00 39.92 2.29
610 629 4.373324 CGCAAGCGTTACATACACGTATAC 60.373 45.833 6.25 0.00 39.92 1.47
611 630 3.725245 CGCAAGCGTTACATACACGTATA 59.275 43.478 6.25 0.00 39.92 1.47
612 631 2.532723 CGCAAGCGTTACATACACGTAT 59.467 45.455 6.25 0.00 39.92 3.06
613 632 1.912756 CGCAAGCGTTACATACACGTA 59.087 47.619 6.25 0.00 39.92 3.57
614 633 0.711670 CGCAAGCGTTACATACACGT 59.288 50.000 6.25 0.00 39.92 4.49
615 634 3.468039 CGCAAGCGTTACATACACG 57.532 52.632 6.25 0.00 40.75 4.49
626 645 1.129809 CAAAGTACGGACGCAAGCG 59.870 57.895 13.50 13.50 46.03 4.68
627 646 0.584876 AACAAAGTACGGACGCAAGC 59.415 50.000 0.00 0.00 45.62 4.01
629 648 4.871993 TTTTAACAAAGTACGGACGCAA 57.128 36.364 0.00 0.00 0.00 4.85
630 649 4.871993 TTTTTAACAAAGTACGGACGCA 57.128 36.364 0.00 0.00 0.00 5.24
649 668 2.542824 CCGTGGCTTCGTTCATGTTTTT 60.543 45.455 0.00 0.00 0.00 1.94
650 669 1.001815 CCGTGGCTTCGTTCATGTTTT 60.002 47.619 0.00 0.00 0.00 2.43
651 670 0.591170 CCGTGGCTTCGTTCATGTTT 59.409 50.000 0.00 0.00 0.00 2.83
652 671 1.234615 CCCGTGGCTTCGTTCATGTT 61.235 55.000 0.00 0.00 0.00 2.71
653 672 1.671054 CCCGTGGCTTCGTTCATGT 60.671 57.895 0.00 0.00 0.00 3.21
654 673 3.039202 GCCCGTGGCTTCGTTCATG 62.039 63.158 7.58 0.00 46.69 3.07
655 674 2.746277 GCCCGTGGCTTCGTTCAT 60.746 61.111 7.58 0.00 46.69 2.57
674 693 5.495433 GAAAGAATTCTACGGTACCTGCCG 61.495 50.000 8.75 2.74 43.49 5.69
675 694 3.538634 AAGAATTCTACGGTACCTGCC 57.461 47.619 8.75 0.00 0.00 4.85
676 695 4.329256 GTGAAAGAATTCTACGGTACCTGC 59.671 45.833 8.75 0.00 36.48 4.85
677 696 4.561606 CGTGAAAGAATTCTACGGTACCTG 59.438 45.833 17.64 6.27 36.90 4.00
678 697 4.460382 TCGTGAAAGAATTCTACGGTACCT 59.540 41.667 22.56 0.00 38.94 3.08
684 703 2.027688 GGCGTCGTGAAAGAATTCTACG 59.972 50.000 18.82 18.82 39.36 3.51
697 716 1.432251 CTAGGTACCAGGCGTCGTG 59.568 63.158 15.94 0.00 0.00 4.35
701 720 1.318158 CGTTCCTAGGTACCAGGCGT 61.318 60.000 15.94 0.00 32.82 5.68
797 824 1.828595 ACCACATACGCCACTGACATA 59.171 47.619 0.00 0.00 0.00 2.29
809 836 2.035576 GGGATGGAGTACGACCACATAC 59.964 54.545 15.01 4.92 40.36 2.39
902 935 3.733507 ATGGAGGGGCGCTCGAGTA 62.734 63.158 23.15 11.23 0.00 2.59
916 949 0.765903 GGGAGCAGGATGAGGATGGA 60.766 60.000 0.00 0.00 39.69 3.41
950 983 1.961277 GGGACTGCTCACCGTTGTG 60.961 63.158 0.00 0.00 44.18 3.33
953 986 2.847234 TGGGGACTGCTCACCGTT 60.847 61.111 0.00 0.00 44.15 4.44
961 994 4.106925 CTGGCCTCTGGGGACTGC 62.107 72.222 0.00 0.00 45.52 4.40
976 1009 2.508887 GGAGTGCGCTCTGCTCTG 60.509 66.667 25.54 0.00 46.85 3.35
978 1011 3.382803 ATGGGAGTGCGCTCTGCTC 62.383 63.158 26.38 18.05 46.63 4.26
979 1012 3.382803 GATGGGAGTGCGCTCTGCT 62.383 63.158 26.38 11.18 46.63 4.24
980 1013 2.894387 GATGGGAGTGCGCTCTGC 60.894 66.667 25.54 20.95 46.70 4.26
1005 1038 4.162690 ATGGCCGCTTCTCCCGAC 62.163 66.667 0.00 0.00 0.00 4.79
1006 1039 4.161295 CATGGCCGCTTCTCCCGA 62.161 66.667 0.00 0.00 0.00 5.14
1008 1041 4.802051 TGCATGGCCGCTTCTCCC 62.802 66.667 0.00 0.00 0.00 4.30
1009 1042 3.207669 CTGCATGGCCGCTTCTCC 61.208 66.667 0.00 0.00 0.00 3.71
1010 1043 2.593468 TACCTGCATGGCCGCTTCTC 62.593 60.000 0.00 0.00 40.22 2.87
1011 1044 2.669133 TACCTGCATGGCCGCTTCT 61.669 57.895 0.00 0.00 40.22 2.85
1012 1045 2.124736 TACCTGCATGGCCGCTTC 60.125 61.111 0.00 0.00 40.22 3.86
1013 1046 2.438434 GTACCTGCATGGCCGCTT 60.438 61.111 0.00 0.00 40.22 4.68
1014 1047 3.716195 TGTACCTGCATGGCCGCT 61.716 61.111 0.00 0.00 40.22 5.52
1015 1048 3.508840 GTGTACCTGCATGGCCGC 61.509 66.667 0.00 0.00 40.22 6.53
1016 1049 2.824041 GGTGTACCTGCATGGCCG 60.824 66.667 0.00 0.00 40.22 6.13
1017 1050 1.076777 ATGGTGTACCTGCATGGCC 60.077 57.895 0.00 0.00 40.22 5.36
1018 1051 0.107017 AGATGGTGTACCTGCATGGC 60.107 55.000 2.32 0.00 40.22 4.40
1019 1052 1.807755 CGAGATGGTGTACCTGCATGG 60.808 57.143 2.32 0.00 42.93 3.66
1020 1053 1.575244 CGAGATGGTGTACCTGCATG 58.425 55.000 2.32 0.00 36.82 4.06
1021 1054 0.179073 GCGAGATGGTGTACCTGCAT 60.179 55.000 2.32 0.00 36.82 3.96
1022 1055 1.218047 GCGAGATGGTGTACCTGCA 59.782 57.895 2.32 0.00 36.82 4.41
1023 1056 1.521681 GGCGAGATGGTGTACCTGC 60.522 63.158 2.32 0.00 36.82 4.85
1024 1057 1.144057 GGGCGAGATGGTGTACCTG 59.856 63.158 2.32 0.00 36.82 4.00
1025 1058 2.064581 GGGGCGAGATGGTGTACCT 61.065 63.158 2.32 0.00 36.82 3.08
1026 1059 2.504519 GGGGCGAGATGGTGTACC 59.495 66.667 0.00 0.00 0.00 3.34
1027 1060 2.106332 CGGGGCGAGATGGTGTAC 59.894 66.667 0.00 0.00 0.00 2.90
1028 1061 1.546589 AAACGGGGCGAGATGGTGTA 61.547 55.000 0.00 0.00 0.00 2.90
1029 1062 2.798148 GAAACGGGGCGAGATGGTGT 62.798 60.000 0.00 0.00 0.00 4.16
1030 1063 2.046314 AAACGGGGCGAGATGGTG 60.046 61.111 0.00 0.00 0.00 4.17
1031 1064 0.974010 TAGAAACGGGGCGAGATGGT 60.974 55.000 0.00 0.00 0.00 3.55
1032 1065 0.249489 CTAGAAACGGGGCGAGATGG 60.249 60.000 0.00 0.00 0.00 3.51
1033 1066 0.876342 GCTAGAAACGGGGCGAGATG 60.876 60.000 0.00 0.00 0.00 2.90
1034 1067 1.442148 GCTAGAAACGGGGCGAGAT 59.558 57.895 0.00 0.00 0.00 2.75
1035 1068 2.718073 GGCTAGAAACGGGGCGAGA 61.718 63.158 0.00 0.00 0.00 4.04
1036 1069 2.202892 GGCTAGAAACGGGGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
1037 1070 3.777910 GGGCTAGAAACGGGGCGA 61.778 66.667 0.00 0.00 0.00 5.54
1038 1071 3.325201 AAGGGCTAGAAACGGGGCG 62.325 63.158 0.00 0.00 0.00 6.13
1039 1072 1.451567 GAAGGGCTAGAAACGGGGC 60.452 63.158 0.00 0.00 0.00 5.80
1040 1073 1.223763 GGAAGGGCTAGAAACGGGG 59.776 63.158 0.00 0.00 0.00 5.73
1041 1074 1.153429 CGGAAGGGCTAGAAACGGG 60.153 63.158 0.00 0.00 0.00 5.28
1042 1075 0.459759 GACGGAAGGGCTAGAAACGG 60.460 60.000 0.00 0.00 0.00 4.44
1043 1076 0.459759 GGACGGAAGGGCTAGAAACG 60.460 60.000 0.00 0.00 0.00 3.60
1044 1077 0.611714 TGGACGGAAGGGCTAGAAAC 59.388 55.000 0.00 0.00 0.00 2.78
1045 1078 1.278127 CTTGGACGGAAGGGCTAGAAA 59.722 52.381 0.00 0.00 0.00 2.52
1046 1079 0.902531 CTTGGACGGAAGGGCTAGAA 59.097 55.000 0.00 0.00 0.00 2.10
1047 1080 0.976073 CCTTGGACGGAAGGGCTAGA 60.976 60.000 0.00 0.00 39.19 2.43
1048 1081 0.976073 TCCTTGGACGGAAGGGCTAG 60.976 60.000 9.50 0.00 42.63 3.42
1049 1082 0.545787 TTCCTTGGACGGAAGGGCTA 60.546 55.000 9.50 0.00 42.63 3.93
1050 1083 1.208165 ATTCCTTGGACGGAAGGGCT 61.208 55.000 9.50 0.00 45.59 5.19
1051 1084 0.323451 AATTCCTTGGACGGAAGGGC 60.323 55.000 9.50 0.00 45.59 5.19
1052 1085 1.004277 TGAATTCCTTGGACGGAAGGG 59.996 52.381 2.27 0.00 45.59 3.95
1053 1086 2.290323 ACTGAATTCCTTGGACGGAAGG 60.290 50.000 2.27 4.23 45.59 3.46
1054 1087 3.059352 ACTGAATTCCTTGGACGGAAG 57.941 47.619 2.27 0.00 45.59 3.46
1055 1088 3.146066 CAACTGAATTCCTTGGACGGAA 58.854 45.455 2.27 0.00 46.37 4.30
1056 1089 2.370519 TCAACTGAATTCCTTGGACGGA 59.629 45.455 2.27 0.00 0.00 4.69
1057 1090 2.744202 CTCAACTGAATTCCTTGGACGG 59.256 50.000 2.27 0.00 0.00 4.79
1058 1091 3.403038 ACTCAACTGAATTCCTTGGACG 58.597 45.455 2.27 1.12 0.00 4.79
1059 1092 4.557496 GCAACTCAACTGAATTCCTTGGAC 60.557 45.833 2.27 0.00 0.00 4.02
1060 1093 3.569701 GCAACTCAACTGAATTCCTTGGA 59.430 43.478 2.27 0.00 0.00 3.53
1061 1094 3.318839 TGCAACTCAACTGAATTCCTTGG 59.681 43.478 2.27 2.45 0.00 3.61
1062 1095 4.572985 TGCAACTCAACTGAATTCCTTG 57.427 40.909 2.27 4.93 0.00 3.61
1063 1096 4.560108 GCATGCAACTCAACTGAATTCCTT 60.560 41.667 14.21 0.00 0.00 3.36
1064 1097 3.057033 GCATGCAACTCAACTGAATTCCT 60.057 43.478 14.21 0.00 0.00 3.36
1065 1098 3.057033 AGCATGCAACTCAACTGAATTCC 60.057 43.478 21.98 0.00 0.00 3.01
1066 1099 4.164294 GAGCATGCAACTCAACTGAATTC 58.836 43.478 21.98 0.00 34.18 2.17
1067 1100 3.570975 TGAGCATGCAACTCAACTGAATT 59.429 39.130 21.98 0.00 41.10 2.17
1068 1101 3.151554 TGAGCATGCAACTCAACTGAAT 58.848 40.909 21.98 0.00 41.10 2.57
1069 1102 2.574450 TGAGCATGCAACTCAACTGAA 58.426 42.857 21.98 0.00 41.10 3.02
1070 1103 2.259266 TGAGCATGCAACTCAACTGA 57.741 45.000 21.98 0.00 41.10 3.41
1071 1104 2.228103 ACATGAGCATGCAACTCAACTG 59.772 45.455 21.98 18.99 46.63 3.16
1072 1105 2.228103 CACATGAGCATGCAACTCAACT 59.772 45.455 21.98 10.59 46.63 3.16
1073 1106 2.227149 TCACATGAGCATGCAACTCAAC 59.773 45.455 21.98 2.68 46.63 3.18
1074 1107 2.227149 GTCACATGAGCATGCAACTCAA 59.773 45.455 21.98 7.32 46.63 3.02
1076 1109 1.808343 TGTCACATGAGCATGCAACTC 59.192 47.619 21.98 9.59 42.39 3.01
1077 1110 1.900245 TGTCACATGAGCATGCAACT 58.100 45.000 21.98 0.00 42.39 3.16
1078 1111 2.933495 ATGTCACATGAGCATGCAAC 57.067 45.000 21.98 13.92 42.39 4.17
1079 1112 3.086282 AGAATGTCACATGAGCATGCAA 58.914 40.909 21.98 8.14 42.39 4.08
1080 1113 2.718563 AGAATGTCACATGAGCATGCA 58.281 42.857 21.98 0.00 42.39 3.96
1081 1114 3.777465 AAGAATGTCACATGAGCATGC 57.223 42.857 10.51 10.51 42.39 4.06
1082 1115 5.562506 AGAAAGAATGTCACATGAGCATG 57.437 39.130 8.82 8.82 44.15 4.06
1083 1116 5.105877 CCAAGAAAGAATGTCACATGAGCAT 60.106 40.000 0.00 0.00 0.00 3.79
1084 1117 4.216902 CCAAGAAAGAATGTCACATGAGCA 59.783 41.667 0.00 0.00 0.00 4.26
1085 1118 4.456911 TCCAAGAAAGAATGTCACATGAGC 59.543 41.667 0.00 0.00 0.00 4.26
1086 1119 6.598457 AGATCCAAGAAAGAATGTCACATGAG 59.402 38.462 0.00 0.00 0.00 2.90
1087 1120 6.373495 CAGATCCAAGAAAGAATGTCACATGA 59.627 38.462 0.00 0.00 0.00 3.07
1088 1121 6.552629 CAGATCCAAGAAAGAATGTCACATG 58.447 40.000 0.00 0.00 0.00 3.21
1089 1122 5.125097 GCAGATCCAAGAAAGAATGTCACAT 59.875 40.000 0.00 0.00 0.00 3.21
1090 1123 4.456911 GCAGATCCAAGAAAGAATGTCACA 59.543 41.667 0.00 0.00 0.00 3.58
1091 1124 4.456911 TGCAGATCCAAGAAAGAATGTCAC 59.543 41.667 0.00 0.00 0.00 3.67
1092 1125 4.654915 TGCAGATCCAAGAAAGAATGTCA 58.345 39.130 0.00 0.00 0.00 3.58
1093 1126 4.940046 TCTGCAGATCCAAGAAAGAATGTC 59.060 41.667 13.74 0.00 0.00 3.06
1094 1127 4.699257 GTCTGCAGATCCAAGAAAGAATGT 59.301 41.667 21.47 0.00 0.00 2.71
1095 1128 4.096081 GGTCTGCAGATCCAAGAAAGAATG 59.904 45.833 21.47 0.00 0.00 2.67
1096 1129 4.018597 AGGTCTGCAGATCCAAGAAAGAAT 60.019 41.667 23.46 0.00 0.00 2.40
1097 1130 3.328931 AGGTCTGCAGATCCAAGAAAGAA 59.671 43.478 23.46 0.00 0.00 2.52
1098 1131 2.909006 AGGTCTGCAGATCCAAGAAAGA 59.091 45.455 23.46 0.00 0.00 2.52
1099 1132 3.347077 AGGTCTGCAGATCCAAGAAAG 57.653 47.619 23.46 0.00 0.00 2.62
1100 1133 3.679389 GAAGGTCTGCAGATCCAAGAAA 58.321 45.455 23.46 0.00 0.00 2.52
1101 1134 2.354103 CGAAGGTCTGCAGATCCAAGAA 60.354 50.000 23.46 0.00 0.00 2.52
1102 1135 1.205655 CGAAGGTCTGCAGATCCAAGA 59.794 52.381 23.46 0.00 0.00 3.02
1103 1136 1.066573 ACGAAGGTCTGCAGATCCAAG 60.067 52.381 23.46 16.10 0.00 3.61
1104 1137 0.976641 ACGAAGGTCTGCAGATCCAA 59.023 50.000 23.46 0.00 0.00 3.53
1242 1276 3.939592 AGGTAGTCAATTAAGCCGAAAGC 59.060 43.478 0.00 0.00 44.25 3.51
1257 1291 5.228579 GACGACCACTTAGTTAGGTAGTC 57.771 47.826 15.30 15.30 45.88 2.59
1258 1292 3.686726 CGACGACCACTTAGTTAGGTAGT 59.313 47.826 7.20 7.20 42.70 2.73
1259 1293 3.686726 ACGACGACCACTTAGTTAGGTAG 59.313 47.826 0.00 0.00 35.36 3.18
1260 1294 3.674997 ACGACGACCACTTAGTTAGGTA 58.325 45.455 0.00 0.00 35.36 3.08
1633 1755 2.185310 TTTCGCCTCCTCCTCCTTGC 62.185 60.000 0.00 0.00 0.00 4.01
1649 1774 0.234884 CGTCGCTTGACCTTGGTTTC 59.765 55.000 0.00 0.00 39.56 2.78
1654 1779 0.319555 TTCCTCGTCGCTTGACCTTG 60.320 55.000 0.00 0.00 39.56 3.61
1655 1780 0.391597 TTTCCTCGTCGCTTGACCTT 59.608 50.000 0.00 0.00 39.56 3.50
1656 1781 0.391597 TTTTCCTCGTCGCTTGACCT 59.608 50.000 0.00 0.00 39.56 3.85
1657 1782 0.790814 CTTTTCCTCGTCGCTTGACC 59.209 55.000 0.00 0.00 39.56 4.02
1658 1783 1.779569 TCTTTTCCTCGTCGCTTGAC 58.220 50.000 0.00 0.00 39.33 3.18
1659 1784 2.519377 TTCTTTTCCTCGTCGCTTGA 57.481 45.000 0.00 0.00 0.00 3.02
1672 1797 1.566018 CTCGCCGCCGTCTTTCTTTT 61.566 55.000 0.00 0.00 35.54 2.27
1772 1915 2.994995 TTCTTCGCCTCGCCCTCA 60.995 61.111 0.00 0.00 0.00 3.86
1845 2021 2.513897 GTACCTCGGCACATGGGC 60.514 66.667 12.85 12.85 39.06 5.36
1846 2022 2.202878 CGTACCTCGGCACATGGG 60.203 66.667 0.00 0.00 35.71 4.00
1847 2023 2.890474 GCGTACCTCGGCACATGG 60.890 66.667 0.00 0.00 40.26 3.66
1848 2024 3.254654 CGCGTACCTCGGCACATG 61.255 66.667 0.00 0.00 40.26 3.21
1993 2196 1.077212 GGGTGCTGCATCATGGAGT 60.077 57.895 15.74 0.00 38.17 3.85
2253 2497 2.104859 GGCTACTTTTCCGGCGGTC 61.105 63.158 27.32 5.83 0.00 4.79
2349 2621 3.560025 GGATTGGTCAAGGAGAGCTTTGA 60.560 47.826 0.00 0.00 44.98 2.69
2474 2754 7.331440 GGAAGATCTCATTGATGCTACTACATG 59.669 40.741 0.00 0.00 35.14 3.21
2475 2755 7.385267 GGAAGATCTCATTGATGCTACTACAT 58.615 38.462 0.00 0.00 35.14 2.29
2476 2756 6.515696 CGGAAGATCTCATTGATGCTACTACA 60.516 42.308 0.00 0.00 35.14 2.74
2598 2983 4.058817 AGCACAAAAGACGACCTTTCTAG 58.941 43.478 7.72 0.00 43.90 2.43
2612 2997 4.823157 CATGATTGGATTGGAGCACAAAA 58.177 39.130 0.00 0.00 43.46 2.44
2693 3078 3.129287 AGAGTCACAACAAGCTTTTGGTG 59.871 43.478 13.09 13.09 44.80 4.17
2694 3079 3.356290 AGAGTCACAACAAGCTTTTGGT 58.644 40.909 18.96 6.57 0.00 3.67
2695 3080 4.376340 AAGAGTCACAACAAGCTTTTGG 57.624 40.909 18.96 5.99 0.00 3.28
2696 3081 7.029563 ACTTAAAGAGTCACAACAAGCTTTTG 58.970 34.615 15.42 15.42 31.20 2.44
2697 3082 7.158099 ACTTAAAGAGTCACAACAAGCTTTT 57.842 32.000 0.00 0.00 31.20 2.27
2698 3083 6.759497 ACTTAAAGAGTCACAACAAGCTTT 57.241 33.333 0.00 0.00 31.20 3.51
2699 3084 7.859325 TTACTTAAAGAGTCACAACAAGCTT 57.141 32.000 0.00 0.00 39.86 3.74
2700 3085 9.726438 ATATTACTTAAAGAGTCACAACAAGCT 57.274 29.630 0.00 0.00 39.86 3.74
2743 3128 1.073923 ACCGGGAGAGCAGTCATTTTT 59.926 47.619 6.32 0.00 0.00 1.94
2744 3129 0.693049 ACCGGGAGAGCAGTCATTTT 59.307 50.000 6.32 0.00 0.00 1.82
2745 3130 1.568504 TACCGGGAGAGCAGTCATTT 58.431 50.000 6.32 0.00 0.00 2.32
2746 3131 1.414181 CATACCGGGAGAGCAGTCATT 59.586 52.381 6.32 0.00 0.00 2.57
2747 3132 1.043816 CATACCGGGAGAGCAGTCAT 58.956 55.000 6.32 0.00 0.00 3.06
2748 3133 0.033503 TCATACCGGGAGAGCAGTCA 60.034 55.000 6.32 0.00 0.00 3.41
2749 3134 1.333177 ATCATACCGGGAGAGCAGTC 58.667 55.000 6.32 0.00 0.00 3.51
2750 3135 1.414181 CAATCATACCGGGAGAGCAGT 59.586 52.381 6.32 0.00 0.00 4.40
2751 3136 1.688735 TCAATCATACCGGGAGAGCAG 59.311 52.381 6.32 0.00 0.00 4.24
2752 3137 1.788229 TCAATCATACCGGGAGAGCA 58.212 50.000 6.32 0.00 0.00 4.26
2753 3138 3.007398 AGAATCAATCATACCGGGAGAGC 59.993 47.826 6.32 0.00 0.00 4.09
2754 3139 4.881019 AGAATCAATCATACCGGGAGAG 57.119 45.455 6.32 0.00 0.00 3.20
2755 3140 6.496911 TGATAAGAATCAATCATACCGGGAGA 59.503 38.462 6.32 0.00 39.20 3.71
2756 3141 6.701340 TGATAAGAATCAATCATACCGGGAG 58.299 40.000 6.32 0.00 39.20 4.30
2757 3142 6.680148 TGATAAGAATCAATCATACCGGGA 57.320 37.500 6.32 0.00 39.20 5.14
2769 3154 3.011144 TGGCCCCTGTTTGATAAGAATCA 59.989 43.478 0.00 0.00 40.43 2.57
2770 3155 3.631250 TGGCCCCTGTTTGATAAGAATC 58.369 45.455 0.00 0.00 0.00 2.52
2771 3156 3.756082 TGGCCCCTGTTTGATAAGAAT 57.244 42.857 0.00 0.00 0.00 2.40
2772 3157 3.534357 TTGGCCCCTGTTTGATAAGAA 57.466 42.857 0.00 0.00 0.00 2.52
2773 3158 3.756082 ATTGGCCCCTGTTTGATAAGA 57.244 42.857 0.00 0.00 0.00 2.10
2774 3159 5.682212 GCTTAATTGGCCCCTGTTTGATAAG 60.682 44.000 0.00 0.00 0.00 1.73
2775 3160 4.161377 GCTTAATTGGCCCCTGTTTGATAA 59.839 41.667 0.00 0.00 0.00 1.75
2776 3161 3.704061 GCTTAATTGGCCCCTGTTTGATA 59.296 43.478 0.00 0.00 0.00 2.15
2777 3162 2.501316 GCTTAATTGGCCCCTGTTTGAT 59.499 45.455 0.00 0.00 0.00 2.57
2778 3163 1.899142 GCTTAATTGGCCCCTGTTTGA 59.101 47.619 0.00 0.00 0.00 2.69
2779 3164 1.066215 GGCTTAATTGGCCCCTGTTTG 60.066 52.381 0.00 0.00 43.49 2.93
2780 3165 1.275666 GGCTTAATTGGCCCCTGTTT 58.724 50.000 0.00 0.00 43.49 2.83
2781 3166 0.970427 CGGCTTAATTGGCCCCTGTT 60.970 55.000 15.50 0.00 46.24 3.16
2782 3167 1.379843 CGGCTTAATTGGCCCCTGT 60.380 57.895 15.50 0.00 46.24 4.00
2783 3168 2.785425 GCGGCTTAATTGGCCCCTG 61.785 63.158 15.50 6.16 46.24 4.45
2784 3169 2.442087 GCGGCTTAATTGGCCCCT 60.442 61.111 15.50 0.00 46.24 4.79
2785 3170 3.536917 GGCGGCTTAATTGGCCCC 61.537 66.667 15.50 13.75 46.24 5.80
2786 3171 2.355193 TTGGCGGCTTAATTGGCCC 61.355 57.895 11.43 9.91 46.24 5.80
2787 3172 1.153647 GTTGGCGGCTTAATTGGCC 60.154 57.895 11.43 12.46 45.76 5.36
2788 3173 0.179137 GAGTTGGCGGCTTAATTGGC 60.179 55.000 11.43 0.00 0.00 4.52
2789 3174 1.463674 AGAGTTGGCGGCTTAATTGG 58.536 50.000 11.43 0.00 0.00 3.16
2790 3175 3.438781 TGTAAGAGTTGGCGGCTTAATTG 59.561 43.478 11.43 0.00 0.00 2.32
2791 3176 3.681593 TGTAAGAGTTGGCGGCTTAATT 58.318 40.909 11.43 1.46 0.00 1.40
2792 3177 3.343941 TGTAAGAGTTGGCGGCTTAAT 57.656 42.857 11.43 0.00 0.00 1.40
2793 3178 2.843401 TGTAAGAGTTGGCGGCTTAA 57.157 45.000 11.43 0.00 0.00 1.85
2794 3179 2.843401 TTGTAAGAGTTGGCGGCTTA 57.157 45.000 11.43 0.00 0.00 3.09
2795 3180 1.812571 CATTGTAAGAGTTGGCGGCTT 59.187 47.619 11.43 0.00 0.00 4.35
2796 3181 1.003118 TCATTGTAAGAGTTGGCGGCT 59.997 47.619 11.43 0.00 0.00 5.52
2797 3182 1.130561 GTCATTGTAAGAGTTGGCGGC 59.869 52.381 0.00 0.00 0.00 6.53
2798 3183 2.416547 CTGTCATTGTAAGAGTTGGCGG 59.583 50.000 0.00 0.00 0.00 6.13
2799 3184 2.159653 GCTGTCATTGTAAGAGTTGGCG 60.160 50.000 0.00 0.00 0.00 5.69
2800 3185 2.813754 TGCTGTCATTGTAAGAGTTGGC 59.186 45.455 0.00 0.00 0.00 4.52
2801 3186 5.437289 TTTGCTGTCATTGTAAGAGTTGG 57.563 39.130 0.00 0.00 0.00 3.77
2802 3187 5.860182 CCATTTGCTGTCATTGTAAGAGTTG 59.140 40.000 0.00 0.00 0.00 3.16
2803 3188 5.047802 CCCATTTGCTGTCATTGTAAGAGTT 60.048 40.000 0.00 0.00 0.00 3.01
2804 3189 4.460382 CCCATTTGCTGTCATTGTAAGAGT 59.540 41.667 0.00 0.00 0.00 3.24
2805 3190 4.701651 TCCCATTTGCTGTCATTGTAAGAG 59.298 41.667 0.00 0.00 0.00 2.85
2806 3191 4.458989 GTCCCATTTGCTGTCATTGTAAGA 59.541 41.667 0.00 0.00 0.00 2.10
2807 3192 4.380867 GGTCCCATTTGCTGTCATTGTAAG 60.381 45.833 0.00 0.00 0.00 2.34
2808 3193 3.509575 GGTCCCATTTGCTGTCATTGTAA 59.490 43.478 0.00 0.00 0.00 2.41
2809 3194 3.088532 GGTCCCATTTGCTGTCATTGTA 58.911 45.455 0.00 0.00 0.00 2.41
2810 3195 1.895131 GGTCCCATTTGCTGTCATTGT 59.105 47.619 0.00 0.00 0.00 2.71
2811 3196 2.173519 AGGTCCCATTTGCTGTCATTG 58.826 47.619 0.00 0.00 0.00 2.82
2812 3197 2.610438 AGGTCCCATTTGCTGTCATT 57.390 45.000 0.00 0.00 0.00 2.57
2813 3198 2.610438 AAGGTCCCATTTGCTGTCAT 57.390 45.000 0.00 0.00 0.00 3.06
2814 3199 2.554344 GGTAAGGTCCCATTTGCTGTCA 60.554 50.000 0.00 0.00 0.00 3.58
2815 3200 2.092323 GGTAAGGTCCCATTTGCTGTC 58.908 52.381 0.00 0.00 0.00 3.51
2816 3201 1.613255 CGGTAAGGTCCCATTTGCTGT 60.613 52.381 0.00 0.00 0.00 4.40
2817 3202 1.094785 CGGTAAGGTCCCATTTGCTG 58.905 55.000 0.00 0.00 0.00 4.41
2818 3203 0.988832 TCGGTAAGGTCCCATTTGCT 59.011 50.000 0.00 0.00 0.00 3.91
2819 3204 1.743394 CTTCGGTAAGGTCCCATTTGC 59.257 52.381 0.00 0.00 0.00 3.68
2820 3205 1.743394 GCTTCGGTAAGGTCCCATTTG 59.257 52.381 0.00 0.00 32.98 2.32
2821 3206 1.340697 GGCTTCGGTAAGGTCCCATTT 60.341 52.381 0.00 0.00 32.98 2.32
2822 3207 0.255033 GGCTTCGGTAAGGTCCCATT 59.745 55.000 0.00 0.00 32.98 3.16
2823 3208 1.912971 GGCTTCGGTAAGGTCCCAT 59.087 57.895 0.00 0.00 32.98 4.00
2824 3209 2.652095 CGGCTTCGGTAAGGTCCCA 61.652 63.158 0.00 0.00 32.98 4.37
2825 3210 1.322538 TACGGCTTCGGTAAGGTCCC 61.323 60.000 0.00 0.00 38.38 4.46
2826 3211 0.101939 CTACGGCTTCGGTAAGGTCC 59.898 60.000 0.00 0.00 38.38 4.46
2827 3212 0.813821 ACTACGGCTTCGGTAAGGTC 59.186 55.000 0.00 0.00 38.38 3.85
2828 3213 0.813821 GACTACGGCTTCGGTAAGGT 59.186 55.000 0.00 0.00 38.38 3.50
2829 3214 0.101939 GGACTACGGCTTCGGTAAGG 59.898 60.000 0.00 0.00 38.38 2.69
2830 3215 0.248377 CGGACTACGGCTTCGGTAAG 60.248 60.000 0.00 0.00 39.42 2.34
2831 3216 1.802636 CGGACTACGGCTTCGGTAA 59.197 57.895 0.00 0.00 39.42 2.85
2832 3217 3.501396 CGGACTACGGCTTCGGTA 58.499 61.111 0.00 0.00 39.42 4.02
2836 3221 9.274096 AAGAGTAAATCTACGGACTACGGCTTC 62.274 44.444 0.00 0.00 42.20 3.86
2837 3222 7.578060 AAGAGTAAATCTACGGACTACGGCTT 61.578 42.308 0.00 0.00 42.20 4.35
2838 3223 6.149575 AAGAGTAAATCTACGGACTACGGCT 61.150 44.000 0.00 0.00 42.20 5.52
2839 3224 4.036144 AAGAGTAAATCTACGGACTACGGC 59.964 45.833 0.00 0.00 42.20 5.68
2840 3225 5.747951 AAGAGTAAATCTACGGACTACGG 57.252 43.478 0.00 0.00 42.20 4.02
2841 3226 8.136057 TCTAAAGAGTAAATCTACGGACTACG 57.864 38.462 0.00 0.00 43.14 3.51
2847 3232 9.896263 GGAGTTATCTAAAGAGTAAATCTACGG 57.104 37.037 0.00 0.00 37.23 4.02
2848 3233 9.896263 GGGAGTTATCTAAAGAGTAAATCTACG 57.104 37.037 0.00 0.00 37.23 3.51
2850 3235 9.075678 CGGGGAGTTATCTAAAGAGTAAATCTA 57.924 37.037 0.00 0.00 37.23 1.98
2851 3236 7.015389 CCGGGGAGTTATCTAAAGAGTAAATCT 59.985 40.741 0.00 0.00 41.27 2.40
2852 3237 7.015001 TCCGGGGAGTTATCTAAAGAGTAAATC 59.985 40.741 0.00 0.00 0.00 2.17
2853 3238 6.842807 TCCGGGGAGTTATCTAAAGAGTAAAT 59.157 38.462 0.00 0.00 0.00 1.40
2854 3239 6.097412 GTCCGGGGAGTTATCTAAAGAGTAAA 59.903 42.308 0.00 0.00 0.00 2.01
2855 3240 5.595952 GTCCGGGGAGTTATCTAAAGAGTAA 59.404 44.000 0.00 0.00 0.00 2.24
2856 3241 5.136105 GTCCGGGGAGTTATCTAAAGAGTA 58.864 45.833 0.00 0.00 0.00 2.59
2857 3242 3.959449 GTCCGGGGAGTTATCTAAAGAGT 59.041 47.826 0.00 0.00 0.00 3.24
2858 3243 3.004524 CGTCCGGGGAGTTATCTAAAGAG 59.995 52.174 0.00 0.00 0.00 2.85
2859 3244 2.954318 CGTCCGGGGAGTTATCTAAAGA 59.046 50.000 0.00 0.00 0.00 2.52
2860 3245 2.954318 TCGTCCGGGGAGTTATCTAAAG 59.046 50.000 0.00 0.00 0.00 1.85
2861 3246 3.017048 TCGTCCGGGGAGTTATCTAAA 57.983 47.619 0.00 0.00 0.00 1.85
2862 3247 2.734755 TCGTCCGGGGAGTTATCTAA 57.265 50.000 0.00 0.00 0.00 2.10
2863 3248 2.787994 GATCGTCCGGGGAGTTATCTA 58.212 52.381 0.00 0.00 0.00 1.98
2864 3249 1.618487 GATCGTCCGGGGAGTTATCT 58.382 55.000 0.00 0.00 0.00 1.98
2865 3250 0.240411 CGATCGTCCGGGGAGTTATC 59.760 60.000 7.03 0.00 0.00 1.75
2866 3251 0.179009 TCGATCGTCCGGGGAGTTAT 60.179 55.000 15.94 0.00 0.00 1.89
2867 3252 0.179009 ATCGATCGTCCGGGGAGTTA 60.179 55.000 15.94 0.00 0.00 2.24
2868 3253 0.179009 TATCGATCGTCCGGGGAGTT 60.179 55.000 15.94 0.00 0.00 3.01
2869 3254 0.179009 TTATCGATCGTCCGGGGAGT 60.179 55.000 15.94 0.00 0.00 3.85
2870 3255 0.522180 CTTATCGATCGTCCGGGGAG 59.478 60.000 15.94 1.54 0.00 4.30
2871 3256 0.892358 CCTTATCGATCGTCCGGGGA 60.892 60.000 15.94 0.00 0.00 4.81
2872 3257 1.585006 CCTTATCGATCGTCCGGGG 59.415 63.158 15.94 8.51 0.00 5.73
2873 3258 1.080705 GCCTTATCGATCGTCCGGG 60.081 63.158 15.94 13.96 0.00 5.73
2874 3259 1.080705 GGCCTTATCGATCGTCCGG 60.081 63.158 15.94 12.23 0.00 5.14
2875 3260 1.080705 GGGCCTTATCGATCGTCCG 60.081 63.158 15.94 2.47 0.00 4.79
2876 3261 0.391597 TTGGGCCTTATCGATCGTCC 59.608 55.000 15.94 2.13 0.00 4.79
2903 3367 1.885887 CTTGATCGGTGGCAAAAGGAA 59.114 47.619 0.00 0.00 0.00 3.36
3017 3547 6.203530 CGATGAGCTATATGAAAAGGCTTCAA 59.796 38.462 0.00 0.00 33.13 2.69
3094 3629 1.531602 AAGCACAACCCCCTTGCTC 60.532 57.895 0.00 0.00 45.93 4.26
3114 3650 8.474025 GGGTAAATCAAATCATTAACATGTGGA 58.526 33.333 0.00 0.00 0.00 4.02
3132 3668 2.806608 CATGCATGCAGGGGTAAATC 57.193 50.000 26.69 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.