Multiple sequence alignment - TraesCS5D01G027300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G027300 chr5D 100.000 2787 0 0 1 2787 24975737 24972951 0.000000e+00 5147.0
1 TraesCS5D01G027300 chr5D 90.890 977 52 19 823 1785 25042134 25043087 0.000000e+00 1277.0
2 TraesCS5D01G027300 chr5D 86.448 701 59 10 1090 1785 24942884 24943553 0.000000e+00 736.0
3 TraesCS5D01G027300 chr5D 79.921 254 18 15 856 1095 24922359 24922593 3.720000e-34 156.0
4 TraesCS5D01G027300 chr5D 83.537 164 15 7 429 584 25040185 25040344 2.890000e-30 143.0
5 TraesCS5D01G027300 chr5D 93.478 46 1 2 2452 2497 535868726 535868683 1.790000e-07 67.6
6 TraesCS5D01G027300 chr5A 90.073 957 66 11 900 1846 17628552 17629489 0.000000e+00 1214.0
7 TraesCS5D01G027300 chr5A 93.247 770 32 9 83 841 17627665 17628425 0.000000e+00 1116.0
8 TraesCS5D01G027300 chr5A 89.641 251 19 4 1876 2125 17630184 17630428 2.080000e-81 313.0
9 TraesCS5D01G027300 chr5A 87.500 160 11 5 2105 2256 17630532 17630690 2.850000e-40 176.0
10 TraesCS5D01G027300 chr5A 87.302 126 12 4 2329 2452 622337637 622337514 1.040000e-29 141.0
11 TraesCS5D01G027300 chr5B 87.679 560 46 11 794 1344 17952145 17952690 5.070000e-177 630.0
12 TraesCS5D01G027300 chr5B 89.352 432 36 7 1358 1785 17952966 17953391 4.090000e-148 534.0
13 TraesCS5D01G027300 chr5B 86.047 129 15 3 2326 2452 513886032 513885905 4.840000e-28 135.0
14 TraesCS5D01G027300 chr5B 87.000 100 12 1 485 584 17915170 17915072 8.160000e-21 111.0
15 TraesCS5D01G027300 chr5B 100.000 37 0 0 2461 2497 532116402 532116366 4.980000e-08 69.4
16 TraesCS5D01G027300 chr1A 84.591 318 43 4 1019 1336 337704101 337703790 7.500000e-81 311.0
17 TraesCS5D01G027300 chr1A 87.218 133 12 3 2326 2457 235673144 235673272 2.240000e-31 147.0
18 TraesCS5D01G027300 chr1A 86.029 136 16 3 2326 2459 49346154 49346288 2.890000e-30 143.0
19 TraesCS5D01G027300 chr1A 86.555 119 11 5 325 442 571275558 571275444 2.910000e-25 126.0
20 TraesCS5D01G027300 chr1B 84.375 320 42 6 1013 1331 349547301 349546989 9.700000e-80 307.0
21 TraesCS5D01G027300 chr1B 83.962 318 45 4 1019 1336 349596141 349595830 1.620000e-77 300.0
22 TraesCS5D01G027300 chr1B 87.597 129 13 3 2326 2452 296236298 296236171 2.240000e-31 147.0
23 TraesCS5D01G027300 chr1B 90.625 96 7 2 343 436 249511491 249511586 2.910000e-25 126.0
24 TraesCS5D01G027300 chr1B 93.617 47 1 2 2452 2497 589771380 589771425 4.980000e-08 69.4
25 TraesCS5D01G027300 chr1B 93.617 47 0 3 2451 2497 76773560 76773603 1.790000e-07 67.6
26 TraesCS5D01G027300 chr1D 83.540 322 45 6 1016 1336 262036275 262036589 7.550000e-76 294.0
27 TraesCS5D01G027300 chr1D 82.812 320 47 6 1013 1331 262287837 262288149 2.110000e-71 279.0
28 TraesCS5D01G027300 chr1D 85.926 135 15 4 2326 2458 26402593 26402725 1.040000e-29 141.0
29 TraesCS5D01G027300 chr7D 84.615 312 20 12 2495 2787 576692644 576692946 4.540000e-73 285.0
30 TraesCS5D01G027300 chr7D 86.842 114 10 5 330 440 154379059 154378948 3.770000e-24 122.0
31 TraesCS5D01G027300 chr4B 90.816 196 9 4 2498 2691 475167077 475166889 1.280000e-63 254.0
32 TraesCS5D01G027300 chr4B 77.812 329 26 18 2498 2787 475166872 475166552 2.870000e-35 159.0
33 TraesCS5D01G027300 chr3D 90.722 194 10 3 2498 2691 556839042 556838857 4.610000e-63 252.0
34 TraesCS5D01G027300 chr3D 79.032 248 12 14 2579 2787 556838770 556838524 1.740000e-27 134.0
35 TraesCS5D01G027300 chr3D 81.481 135 19 3 2326 2457 136058360 136058491 3.800000e-19 106.0
36 TraesCS5D01G027300 chr3B 88.235 136 13 3 2326 2459 663445564 663445698 2.870000e-35 159.0
37 TraesCS5D01G027300 chr3B 87.273 110 6 8 323 430 293739821 293739924 4.880000e-23 119.0
38 TraesCS5D01G027300 chr3B 91.071 56 2 1 2462 2514 452757473 452757418 3.850000e-09 73.1
39 TraesCS5D01G027300 chr3A 88.148 135 12 4 2325 2457 119796601 119796733 1.030000e-34 158.0
40 TraesCS5D01G027300 chr3A 88.679 53 4 2 2462 2514 40654477 40654527 2.320000e-06 63.9
41 TraesCS5D01G027300 chr6B 95.349 86 2 2 346 430 711373894 711373978 4.840000e-28 135.0
42 TraesCS5D01G027300 chr2D 91.667 96 5 3 342 436 108886669 108886576 2.250000e-26 130.0
43 TraesCS5D01G027300 chr2B 90.722 97 6 3 346 441 7641625 7641719 2.910000e-25 126.0
44 TraesCS5D01G027300 chr2B 95.556 45 1 1 2454 2498 123121191 123121234 1.380000e-08 71.3
45 TraesCS5D01G027300 chr2B 88.889 54 2 2 2462 2511 593680790 593680843 2.320000e-06 63.9
46 TraesCS5D01G027300 chr2A 84.746 118 12 5 326 442 81757327 81757215 2.270000e-21 113.0
47 TraesCS5D01G027300 chr4D 88.679 53 2 4 2446 2497 118432975 118433024 8.330000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G027300 chr5D 24972951 24975737 2786 True 5147.00 5147 100.00000 1 2787 1 chr5D.!!$R1 2786
1 TraesCS5D01G027300 chr5D 24942884 24943553 669 False 736.00 736 86.44800 1090 1785 1 chr5D.!!$F2 695
2 TraesCS5D01G027300 chr5D 25040185 25043087 2902 False 710.00 1277 87.21350 429 1785 2 chr5D.!!$F3 1356
3 TraesCS5D01G027300 chr5A 17627665 17630690 3025 False 704.75 1214 90.11525 83 2256 4 chr5A.!!$F1 2173
4 TraesCS5D01G027300 chr5B 17952145 17953391 1246 False 582.00 630 88.51550 794 1785 2 chr5B.!!$F1 991
5 TraesCS5D01G027300 chr4B 475166552 475167077 525 True 206.50 254 84.31400 2498 2787 2 chr4B.!!$R1 289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 2303 0.385598 CACGAGACGTCACACGATGT 60.386 55.0 26.75 9.86 46.05 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 4927 0.027979 CAGCCGCATGGATTTGTACG 59.972 55.0 0.0 0.0 37.49 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.459063 GTCCCGCTCGGCCTAGTT 61.459 66.667 6.11 0.00 0.00 2.24
18 19 2.123428 GTCCCGCTCGGCCTAGTTA 61.123 63.158 6.11 0.00 0.00 2.24
19 20 1.826921 TCCCGCTCGGCCTAGTTAG 60.827 63.158 6.11 0.00 0.00 2.34
20 21 2.125961 CCCGCTCGGCCTAGTTAGT 61.126 63.158 6.11 0.00 0.00 2.24
21 22 1.065928 CCGCTCGGCCTAGTTAGTG 59.934 63.158 6.11 0.00 0.00 2.74
22 23 1.664321 CCGCTCGGCCTAGTTAGTGT 61.664 60.000 6.11 0.00 0.00 3.55
23 24 1.019673 CGCTCGGCCTAGTTAGTGTA 58.980 55.000 6.11 0.00 0.00 2.90
24 25 1.268437 CGCTCGGCCTAGTTAGTGTAC 60.268 57.143 6.11 0.00 0.00 2.90
25 26 1.268437 GCTCGGCCTAGTTAGTGTACG 60.268 57.143 6.11 0.00 0.00 3.67
26 27 2.012673 CTCGGCCTAGTTAGTGTACGT 58.987 52.381 0.00 0.00 0.00 3.57
27 28 2.009774 TCGGCCTAGTTAGTGTACGTC 58.990 52.381 0.00 0.00 0.00 4.34
28 29 2.012673 CGGCCTAGTTAGTGTACGTCT 58.987 52.381 0.00 0.00 0.00 4.18
29 30 3.118775 TCGGCCTAGTTAGTGTACGTCTA 60.119 47.826 0.00 0.00 0.00 2.59
30 31 3.812053 CGGCCTAGTTAGTGTACGTCTAT 59.188 47.826 0.00 0.00 0.00 1.98
31 32 4.274459 CGGCCTAGTTAGTGTACGTCTATT 59.726 45.833 0.00 0.00 0.00 1.73
32 33 5.220931 CGGCCTAGTTAGTGTACGTCTATTT 60.221 44.000 0.00 0.00 0.00 1.40
33 34 6.567959 GGCCTAGTTAGTGTACGTCTATTTT 58.432 40.000 0.00 0.00 0.00 1.82
34 35 6.474751 GGCCTAGTTAGTGTACGTCTATTTTG 59.525 42.308 0.00 0.00 0.00 2.44
35 36 6.020041 GCCTAGTTAGTGTACGTCTATTTTGC 60.020 42.308 0.00 0.00 0.00 3.68
36 37 6.474751 CCTAGTTAGTGTACGTCTATTTTGCC 59.525 42.308 0.00 0.00 0.00 4.52
37 38 6.034161 AGTTAGTGTACGTCTATTTTGCCT 57.966 37.500 0.00 0.00 0.00 4.75
38 39 6.461640 AGTTAGTGTACGTCTATTTTGCCTT 58.538 36.000 0.00 0.00 0.00 4.35
39 40 6.932960 AGTTAGTGTACGTCTATTTTGCCTTT 59.067 34.615 0.00 0.00 0.00 3.11
40 41 8.090214 AGTTAGTGTACGTCTATTTTGCCTTTA 58.910 33.333 0.00 0.00 0.00 1.85
41 42 8.876790 GTTAGTGTACGTCTATTTTGCCTTTAT 58.123 33.333 0.00 0.00 0.00 1.40
42 43 7.916914 AGTGTACGTCTATTTTGCCTTTATT 57.083 32.000 0.00 0.00 0.00 1.40
43 44 8.331730 AGTGTACGTCTATTTTGCCTTTATTT 57.668 30.769 0.00 0.00 0.00 1.40
44 45 9.439500 AGTGTACGTCTATTTTGCCTTTATTTA 57.561 29.630 0.00 0.00 0.00 1.40
45 46 9.481800 GTGTACGTCTATTTTGCCTTTATTTAC 57.518 33.333 0.00 0.00 0.00 2.01
46 47 9.439500 TGTACGTCTATTTTGCCTTTATTTACT 57.561 29.630 0.00 0.00 0.00 2.24
47 48 9.698617 GTACGTCTATTTTGCCTTTATTTACTG 57.301 33.333 0.00 0.00 0.00 2.74
48 49 7.248437 ACGTCTATTTTGCCTTTATTTACTGC 58.752 34.615 0.00 0.00 0.00 4.40
49 50 7.120726 ACGTCTATTTTGCCTTTATTTACTGCT 59.879 33.333 0.00 0.00 0.00 4.24
50 51 7.429340 CGTCTATTTTGCCTTTATTTACTGCTG 59.571 37.037 0.00 0.00 0.00 4.41
51 52 8.244113 GTCTATTTTGCCTTTATTTACTGCTGT 58.756 33.333 0.66 0.66 0.00 4.40
52 53 8.802267 TCTATTTTGCCTTTATTTACTGCTGTT 58.198 29.630 0.09 0.00 0.00 3.16
58 59 9.627123 TTGCCTTTATTTACTGCTGTTATATCT 57.373 29.630 0.09 0.00 0.00 1.98
59 60 9.273016 TGCCTTTATTTACTGCTGTTATATCTC 57.727 33.333 0.09 0.00 0.00 2.75
60 61 9.495572 GCCTTTATTTACTGCTGTTATATCTCT 57.504 33.333 0.09 0.00 0.00 3.10
70 71 9.486497 ACTGCTGTTATATCTCTTATCATTGTG 57.514 33.333 0.00 0.00 0.00 3.33
71 72 8.315391 TGCTGTTATATCTCTTATCATTGTGC 57.685 34.615 0.00 0.00 0.00 4.57
72 73 7.116805 TGCTGTTATATCTCTTATCATTGTGCG 59.883 37.037 0.00 0.00 0.00 5.34
73 74 7.116948 GCTGTTATATCTCTTATCATTGTGCGT 59.883 37.037 0.00 0.00 0.00 5.24
74 75 8.298030 TGTTATATCTCTTATCATTGTGCGTG 57.702 34.615 0.00 0.00 0.00 5.34
75 76 5.852738 ATATCTCTTATCATTGTGCGTGC 57.147 39.130 0.00 0.00 0.00 5.34
76 77 2.971307 TCTCTTATCATTGTGCGTGCA 58.029 42.857 0.00 0.00 0.00 4.57
77 78 3.333804 TCTCTTATCATTGTGCGTGCAA 58.666 40.909 0.00 0.00 0.00 4.08
78 79 3.940852 TCTCTTATCATTGTGCGTGCAAT 59.059 39.130 0.00 1.67 39.42 3.56
79 80 5.115480 TCTCTTATCATTGTGCGTGCAATA 58.885 37.500 0.00 0.00 37.00 1.90
80 81 5.759763 TCTCTTATCATTGTGCGTGCAATAT 59.240 36.000 0.00 0.00 37.00 1.28
81 82 5.750650 TCTTATCATTGTGCGTGCAATATG 58.249 37.500 0.00 3.74 37.00 1.78
190 196 2.440599 GGAGCACCACCCCACATT 59.559 61.111 0.00 0.00 35.97 2.71
197 203 2.619332 GCACCACCCCACATTGTGTATA 60.619 50.000 15.34 0.00 0.00 1.47
200 206 3.268334 ACCACCCCACATTGTGTATATGT 59.732 43.478 15.34 4.70 36.70 2.29
201 207 4.475381 ACCACCCCACATTGTGTATATGTA 59.525 41.667 15.34 0.00 34.59 2.29
243 249 6.152661 CCCAGAAGGCAAAACATGTATAAGAA 59.847 38.462 0.00 0.00 0.00 2.52
244 250 7.147846 CCCAGAAGGCAAAACATGTATAAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
288 294 5.867716 CCACGCTACAATAAGAACTACAGTT 59.132 40.000 0.00 0.00 41.64 3.16
301 307 6.622549 AGAACTACAGTTGTAAATCTCCTCG 58.377 40.000 0.00 0.00 38.56 4.63
318 324 3.134458 CCTCGCTTGTTTGTCTCTTTCT 58.866 45.455 0.00 0.00 0.00 2.52
358 364 2.426381 CAGTAACTTACTCCCTCCGTCC 59.574 54.545 0.00 0.00 36.76 4.79
386 392 7.521509 AATATAAGAACGCTGTTGACACTAC 57.478 36.000 0.00 0.00 0.00 2.73
388 394 2.743938 AGAACGCTGTTGACACTACAG 58.256 47.619 3.33 3.33 44.55 2.74
421 428 6.982724 AGAAAACGTTCTTATATTAGGGACGG 59.017 38.462 0.00 5.63 41.55 4.79
425 432 4.082354 CGTTCTTATATTAGGGACGGAGGG 60.082 50.000 9.30 0.00 0.00 4.30
479 486 2.606961 CCACAACACGTGCGAGCAT 61.607 57.895 17.22 0.00 44.91 3.79
615 712 8.217111 TGCCAATAGGTTTGATTCAGATACATA 58.783 33.333 0.00 0.00 37.19 2.29
674 771 2.938956 ACCCAAAGAGACTGGACTTG 57.061 50.000 0.00 0.00 35.85 3.16
704 836 7.121759 AGAGAAAGAAGATGAGAGACAGAGAAG 59.878 40.741 0.00 0.00 0.00 2.85
732 869 1.845266 AGATTCAGATACACGCGCAG 58.155 50.000 5.73 0.55 0.00 5.18
841 2302 1.665544 GCACGAGACGTCACACGATG 61.666 60.000 26.75 21.60 46.05 3.84
842 2303 0.385598 CACGAGACGTCACACGATGT 60.386 55.000 26.75 9.86 46.05 3.06
847 2308 4.142838 ACGAGACGTCACACGATGTTATTA 60.143 41.667 26.75 0.00 46.05 0.98
849 2310 6.131389 CGAGACGTCACACGATGTTATTATA 58.869 40.000 19.50 0.00 46.05 0.98
852 2313 9.263626 GAGACGTCACACGATGTTATTATATAG 57.736 37.037 19.50 0.00 46.05 1.31
854 2315 8.723777 ACGTCACACGATGTTATTATATAGTG 57.276 34.615 2.48 1.30 46.05 2.74
884 2462 2.048597 CAGTACCGCGCTTGGTCA 60.049 61.111 10.45 0.00 42.62 4.02
896 2474 1.734465 GCTTGGTCATCGAGTCCTTTG 59.266 52.381 0.00 0.00 0.00 2.77
903 2483 3.923461 GTCATCGAGTCCTTTGAAGTCAG 59.077 47.826 0.00 0.00 0.00 3.51
939 2519 1.822371 GGCCGGCAATTAAGAAAGGAA 59.178 47.619 30.85 0.00 0.00 3.36
940 2520 2.232696 GGCCGGCAATTAAGAAAGGAAA 59.767 45.455 30.85 0.00 0.00 3.13
941 2521 3.511699 GCCGGCAATTAAGAAAGGAAAG 58.488 45.455 24.80 0.00 0.00 2.62
942 2522 3.676049 GCCGGCAATTAAGAAAGGAAAGG 60.676 47.826 24.80 0.00 0.00 3.11
943 2523 3.761752 CCGGCAATTAAGAAAGGAAAGGA 59.238 43.478 0.00 0.00 0.00 3.36
975 2556 3.119316 ACCGATGTTGAGAGAGTAGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
985 2566 2.554032 GAGAGTAGCAAGGCAAAGCAAA 59.446 45.455 0.00 0.00 0.00 3.68
986 2567 2.555757 AGAGTAGCAAGGCAAAGCAAAG 59.444 45.455 0.00 0.00 0.00 2.77
987 2568 1.000171 AGTAGCAAGGCAAAGCAAAGC 60.000 47.619 0.00 0.00 0.00 3.51
988 2569 1.039068 TAGCAAGGCAAAGCAAAGCA 58.961 45.000 0.00 0.00 0.00 3.91
1027 2608 0.605589 CTGCGGAGAGGAACTGAAGT 59.394 55.000 0.00 0.00 41.55 3.01
1379 3226 1.613317 TACCTCACCCTCACATGGCG 61.613 60.000 0.00 0.00 0.00 5.69
1399 3246 1.567504 GCGTGCGTTCATGTATACCT 58.432 50.000 0.00 0.00 0.00 3.08
1466 3315 4.214327 CGGGCGAGGAGAAGGAGC 62.214 72.222 0.00 0.00 0.00 4.70
1570 3419 2.446036 GGACCCGGCTACCTGGAT 60.446 66.667 0.00 0.00 32.04 3.41
1583 3432 0.322648 CCTGGATATCATGCTCGGCA 59.677 55.000 4.83 1.01 44.86 5.69
1618 3467 3.646976 CGCGCGACGGAGGAGATA 61.647 66.667 28.94 0.00 38.44 1.98
1749 3598 2.353607 CGAGTATGCCGAGGCGAC 60.354 66.667 9.78 9.92 45.51 5.19
1785 3637 0.107831 GTGTCCAGCACCACCAACTA 59.892 55.000 0.00 0.00 42.10 2.24
1787 3639 1.202758 TGTCCAGCACCACCAACTAAG 60.203 52.381 0.00 0.00 0.00 2.18
1830 3686 0.771756 CGCGTGTTTGTTCTGCAATG 59.228 50.000 0.00 0.00 36.89 2.82
1858 3760 4.260990 CGGCTTGTCAAACTATTGTGTTCA 60.261 41.667 0.00 0.00 37.79 3.18
1860 3762 4.976116 GCTTGTCAAACTATTGTGTTCACC 59.024 41.667 0.37 0.00 37.79 4.02
1931 4453 5.452078 TTGACACATTTTCACTTCCATCC 57.548 39.130 0.00 0.00 0.00 3.51
1989 4511 5.711976 TCCAGATGGAAAGGAAAATCTTCAC 59.288 40.000 0.00 0.00 42.18 3.18
1997 4519 2.084546 GGAAAATCTTCACGACCCCAG 58.915 52.381 0.00 0.00 32.75 4.45
2018 4540 1.528586 GTGATATGAGCATGCCACGTC 59.471 52.381 15.66 13.20 0.00 4.34
2019 4541 0.786581 GATATGAGCATGCCACGTCG 59.213 55.000 15.66 0.00 0.00 5.12
2038 4560 1.099879 GCGCATGAGCAGGGAGATTT 61.100 55.000 17.16 0.00 42.27 2.17
2049 4571 3.190118 GCAGGGAGATTTGACAAGTCTTG 59.810 47.826 13.76 11.17 0.00 3.02
2054 4576 5.278512 GGGAGATTTGACAAGTCTTGGTTTC 60.279 44.000 16.85 6.18 34.12 2.78
2083 4605 7.441836 ACAAAATTTGTCCTTTTCCTGGATAC 58.558 34.615 5.41 0.00 40.56 2.24
2125 4647 3.414022 TGCTGCCCCTGATTAGCA 58.586 55.556 0.00 0.00 43.26 3.49
2126 4648 1.925120 TGCTGCCCCTGATTAGCAT 59.075 52.632 0.00 0.00 40.88 3.79
2127 4649 0.179009 TGCTGCCCCTGATTAGCATC 60.179 55.000 0.00 0.00 40.88 3.91
2146 4793 1.419922 GTGGCTTGATGCGTACGTG 59.580 57.895 17.90 2.10 44.05 4.49
2149 4796 1.011968 GGCTTGATGCGTACGTGTGA 61.012 55.000 17.90 0.00 44.05 3.58
2150 4797 0.093026 GCTTGATGCGTACGTGTGAC 59.907 55.000 17.90 0.00 0.00 3.67
2210 4864 3.942748 TGGGAAATGGTGCTTCGTATAAC 59.057 43.478 0.00 0.00 0.00 1.89
2214 4868 5.123344 GGAAATGGTGCTTCGTATAACTGTT 59.877 40.000 0.00 0.00 0.00 3.16
2217 4871 2.095372 GGTGCTTCGTATAACTGTTGCC 59.905 50.000 2.69 0.00 0.00 4.52
2226 4880 1.169661 TAACTGTTGCCTTGCGGTGG 61.170 55.000 2.69 0.00 0.00 4.61
2227 4881 2.594303 CTGTTGCCTTGCGGTGGA 60.594 61.111 0.00 0.00 0.00 4.02
2228 4882 2.904866 TGTTGCCTTGCGGTGGAC 60.905 61.111 0.00 0.00 0.00 4.02
2256 4910 2.049433 CCGCTACGGCCGAATAGG 60.049 66.667 35.90 24.35 41.17 2.57
2257 4911 2.049433 CGCTACGGCCGAATAGGG 60.049 66.667 35.90 26.50 41.48 3.53
2270 4924 5.169836 CCGAATAGGGCTTGTACAAAATC 57.830 43.478 10.03 2.00 35.97 2.17
2271 4925 4.638421 CCGAATAGGGCTTGTACAAAATCA 59.362 41.667 10.03 0.00 35.97 2.57
2272 4926 5.299279 CCGAATAGGGCTTGTACAAAATCAT 59.701 40.000 10.03 2.75 35.97 2.45
2273 4927 6.430451 CGAATAGGGCTTGTACAAAATCATC 58.570 40.000 10.03 2.30 0.00 2.92
2274 4928 6.377327 AATAGGGCTTGTACAAAATCATCG 57.623 37.500 10.03 0.00 0.00 3.84
2275 4929 3.686016 AGGGCTTGTACAAAATCATCGT 58.314 40.909 10.03 0.00 0.00 3.73
2276 4930 4.839121 AGGGCTTGTACAAAATCATCGTA 58.161 39.130 10.03 0.00 0.00 3.43
2277 4931 4.634443 AGGGCTTGTACAAAATCATCGTAC 59.366 41.667 10.03 0.00 36.79 3.67
2278 4932 4.393680 GGGCTTGTACAAAATCATCGTACA 59.606 41.667 10.03 0.00 42.70 2.90
2284 4938 7.674471 TGTACAAAATCATCGTACAAATCCA 57.326 32.000 0.00 0.00 41.76 3.41
2285 4939 8.275015 TGTACAAAATCATCGTACAAATCCAT 57.725 30.769 0.00 0.00 41.76 3.41
2286 4940 8.180920 TGTACAAAATCATCGTACAAATCCATG 58.819 33.333 0.00 0.00 41.76 3.66
2287 4941 6.035843 ACAAAATCATCGTACAAATCCATGC 58.964 36.000 0.00 0.00 0.00 4.06
2288 4942 4.472691 AATCATCGTACAAATCCATGCG 57.527 40.909 0.00 0.00 0.00 4.73
2289 4943 2.209273 TCATCGTACAAATCCATGCGG 58.791 47.619 0.00 0.00 0.00 5.69
2290 4944 0.944386 ATCGTACAAATCCATGCGGC 59.056 50.000 0.00 0.00 0.00 6.53
2291 4945 0.107897 TCGTACAAATCCATGCGGCT 60.108 50.000 0.00 0.00 0.00 5.52
2292 4946 0.027979 CGTACAAATCCATGCGGCTG 59.972 55.000 0.00 0.00 0.00 4.85
2293 4947 0.381801 GTACAAATCCATGCGGCTGG 59.618 55.000 10.92 10.92 37.66 4.85
2294 4948 0.034574 TACAAATCCATGCGGCTGGT 60.035 50.000 15.06 4.09 37.57 4.00
2295 4949 0.034574 ACAAATCCATGCGGCTGGTA 60.035 50.000 15.06 5.99 37.57 3.25
2296 4950 0.381801 CAAATCCATGCGGCTGGTAC 59.618 55.000 15.06 0.00 37.57 3.34
2297 4951 0.034574 AAATCCATGCGGCTGGTACA 60.035 50.000 15.06 1.24 37.57 2.90
2298 4952 0.034574 AATCCATGCGGCTGGTACAA 60.035 50.000 15.06 0.95 38.70 2.41
2299 4953 0.034574 ATCCATGCGGCTGGTACAAA 60.035 50.000 15.06 0.66 38.70 2.83
2300 4954 0.250945 TCCATGCGGCTGGTACAAAA 60.251 50.000 15.06 0.00 38.70 2.44
2301 4955 0.817013 CCATGCGGCTGGTACAAAAT 59.183 50.000 0.00 0.00 38.70 1.82
2302 4956 1.202290 CCATGCGGCTGGTACAAAATC 60.202 52.381 0.00 0.00 38.70 2.17
2303 4957 1.472082 CATGCGGCTGGTACAAAATCA 59.528 47.619 0.00 0.00 38.70 2.57
2304 4958 0.878416 TGCGGCTGGTACAAAATCAC 59.122 50.000 0.00 0.00 38.70 3.06
2305 4959 0.179200 GCGGCTGGTACAAAATCACG 60.179 55.000 0.00 0.00 38.70 4.35
2306 4960 1.153353 CGGCTGGTACAAAATCACGT 58.847 50.000 0.00 0.00 38.70 4.49
2307 4961 1.533731 CGGCTGGTACAAAATCACGTT 59.466 47.619 0.00 0.00 38.70 3.99
2308 4962 2.031508 CGGCTGGTACAAAATCACGTTT 60.032 45.455 0.00 0.00 38.70 3.60
2309 4963 3.549221 CGGCTGGTACAAAATCACGTTTT 60.549 43.478 0.00 0.00 40.59 2.43
2310 4964 4.364860 GGCTGGTACAAAATCACGTTTTT 58.635 39.130 0.00 0.00 37.93 1.94
2332 4986 7.754851 TTTTTATGGGGAAAGAGTGTTAGAC 57.245 36.000 0.00 0.00 0.00 2.59
2333 4987 6.442541 TTTATGGGGAAAGAGTGTTAGACA 57.557 37.500 0.00 0.00 0.00 3.41
2334 4988 4.993705 ATGGGGAAAGAGTGTTAGACAA 57.006 40.909 0.00 0.00 0.00 3.18
2335 4989 4.781775 TGGGGAAAGAGTGTTAGACAAA 57.218 40.909 0.00 0.00 0.00 2.83
2336 4990 5.118729 TGGGGAAAGAGTGTTAGACAAAA 57.881 39.130 0.00 0.00 0.00 2.44
2337 4991 4.885325 TGGGGAAAGAGTGTTAGACAAAAC 59.115 41.667 0.00 0.00 0.00 2.43
2338 4992 4.885325 GGGGAAAGAGTGTTAGACAAAACA 59.115 41.667 0.00 0.00 37.03 2.83
2339 4993 5.358725 GGGGAAAGAGTGTTAGACAAAACAA 59.641 40.000 0.00 0.00 40.85 2.83
2340 4994 6.127563 GGGGAAAGAGTGTTAGACAAAACAAA 60.128 38.462 0.00 0.00 40.85 2.83
2341 4995 7.317390 GGGAAAGAGTGTTAGACAAAACAAAA 58.683 34.615 0.00 0.00 40.85 2.44
2342 4996 7.815549 GGGAAAGAGTGTTAGACAAAACAAAAA 59.184 33.333 0.00 0.00 40.85 1.94
2343 4997 9.366216 GGAAAGAGTGTTAGACAAAACAAAAAT 57.634 29.630 0.00 0.00 40.85 1.82
2349 5003 9.843334 AGTGTTAGACAAAACAAAAATAAACGA 57.157 25.926 0.00 0.00 40.85 3.85
2356 5010 8.004585 ACAAAACAAAAATAAACGAAACACGA 57.995 26.923 0.00 0.00 45.77 4.35
2357 5011 8.157183 ACAAAACAAAAATAAACGAAACACGAG 58.843 29.630 0.00 0.00 45.77 4.18
2358 5012 8.366666 CAAAACAAAAATAAACGAAACACGAGA 58.633 29.630 0.00 0.00 45.77 4.04
2359 5013 7.659290 AACAAAAATAAACGAAACACGAGAG 57.341 32.000 0.00 0.00 45.77 3.20
2360 5014 7.007313 ACAAAAATAAACGAAACACGAGAGA 57.993 32.000 0.00 0.00 45.77 3.10
2361 5015 6.903479 ACAAAAATAAACGAAACACGAGAGAC 59.097 34.615 0.00 0.00 45.77 3.36
2362 5016 6.592798 AAAATAAACGAAACACGAGAGACA 57.407 33.333 0.00 0.00 45.77 3.41
2363 5017 5.571778 AATAAACGAAACACGAGAGACAC 57.428 39.130 0.00 0.00 45.77 3.67
2364 5018 2.572191 AACGAAACACGAGAGACACA 57.428 45.000 0.00 0.00 45.77 3.72
2365 5019 2.572191 ACGAAACACGAGAGACACAA 57.428 45.000 0.00 0.00 45.77 3.33
2366 5020 2.883574 ACGAAACACGAGAGACACAAA 58.116 42.857 0.00 0.00 45.77 2.83
2367 5021 3.454375 ACGAAACACGAGAGACACAAAT 58.546 40.909 0.00 0.00 45.77 2.32
2368 5022 3.869246 ACGAAACACGAGAGACACAAATT 59.131 39.130 0.00 0.00 45.77 1.82
2369 5023 4.331717 ACGAAACACGAGAGACACAAATTT 59.668 37.500 0.00 0.00 45.77 1.82
2370 5024 5.163794 ACGAAACACGAGAGACACAAATTTT 60.164 36.000 0.00 0.00 45.77 1.82
2371 5025 5.737290 CGAAACACGAGAGACACAAATTTTT 59.263 36.000 0.00 0.00 45.77 1.94
2372 5026 6.902948 CGAAACACGAGAGACACAAATTTTTA 59.097 34.615 0.00 0.00 45.77 1.52
2373 5027 7.097570 CGAAACACGAGAGACACAAATTTTTAC 60.098 37.037 0.00 0.00 45.77 2.01
2374 5028 5.734311 ACACGAGAGACACAAATTTTTACG 58.266 37.500 0.00 0.00 0.00 3.18
2375 5029 5.292589 ACACGAGAGACACAAATTTTTACGT 59.707 36.000 0.00 0.00 0.00 3.57
2376 5030 5.615581 CACGAGAGACACAAATTTTTACGTG 59.384 40.000 0.00 0.00 39.59 4.49
2377 5031 5.137403 CGAGAGACACAAATTTTTACGTGG 58.863 41.667 0.00 0.00 33.62 4.94
2378 5032 5.050634 CGAGAGACACAAATTTTTACGTGGA 60.051 40.000 0.00 0.00 33.62 4.02
2379 5033 6.510478 CGAGAGACACAAATTTTTACGTGGAA 60.510 38.462 0.00 0.00 33.62 3.53
2380 5034 7.090953 AGAGACACAAATTTTTACGTGGAAA 57.909 32.000 0.00 0.00 33.62 3.13
2381 5035 6.970613 AGAGACACAAATTTTTACGTGGAAAC 59.029 34.615 0.00 1.51 33.62 2.78
2382 5036 6.037726 AGACACAAATTTTTACGTGGAAACC 58.962 36.000 0.00 0.00 33.62 3.27
2383 5037 5.110598 ACACAAATTTTTACGTGGAAACCC 58.889 37.500 0.00 0.00 33.62 4.11
2384 5038 5.105269 ACACAAATTTTTACGTGGAAACCCT 60.105 36.000 0.00 0.00 33.62 4.34
2385 5039 5.813157 CACAAATTTTTACGTGGAAACCCTT 59.187 36.000 0.00 0.00 0.00 3.95
2386 5040 5.813157 ACAAATTTTTACGTGGAAACCCTTG 59.187 36.000 0.00 6.74 0.00 3.61
2387 5041 3.439895 TTTTTACGTGGAAACCCTTGC 57.560 42.857 0.00 0.00 0.00 4.01
2388 5042 2.351706 TTTACGTGGAAACCCTTGCT 57.648 45.000 0.00 0.00 0.00 3.91
2389 5043 1.600023 TTACGTGGAAACCCTTGCTG 58.400 50.000 0.00 0.00 0.00 4.41
2390 5044 0.250553 TACGTGGAAACCCTTGCTGG 60.251 55.000 0.00 0.00 0.00 4.85
2391 5045 1.228124 CGTGGAAACCCTTGCTGGA 60.228 57.895 0.00 0.00 38.35 3.86
2392 5046 1.237285 CGTGGAAACCCTTGCTGGAG 61.237 60.000 0.00 0.00 38.35 3.86
2393 5047 0.110486 GTGGAAACCCTTGCTGGAGA 59.890 55.000 0.00 0.00 38.35 3.71
2394 5048 0.850100 TGGAAACCCTTGCTGGAGAA 59.150 50.000 0.00 0.00 38.35 2.87
2395 5049 1.216678 TGGAAACCCTTGCTGGAGAAA 59.783 47.619 0.00 0.00 38.35 2.52
2396 5050 2.316108 GGAAACCCTTGCTGGAGAAAA 58.684 47.619 0.00 0.00 38.35 2.29
2397 5051 2.035961 GGAAACCCTTGCTGGAGAAAAC 59.964 50.000 0.00 0.00 38.35 2.43
2398 5052 2.755952 AACCCTTGCTGGAGAAAACT 57.244 45.000 0.00 0.00 38.35 2.66
2399 5053 3.876309 AACCCTTGCTGGAGAAAACTA 57.124 42.857 0.00 0.00 38.35 2.24
2400 5054 3.141767 ACCCTTGCTGGAGAAAACTAC 57.858 47.619 0.00 0.00 38.35 2.73
2401 5055 2.076863 CCCTTGCTGGAGAAAACTACG 58.923 52.381 0.00 0.00 38.35 3.51
2402 5056 2.076863 CCTTGCTGGAGAAAACTACGG 58.923 52.381 0.00 0.00 38.35 4.02
2403 5057 2.289444 CCTTGCTGGAGAAAACTACGGA 60.289 50.000 0.00 0.00 38.35 4.69
2404 5058 2.743636 TGCTGGAGAAAACTACGGAG 57.256 50.000 0.00 0.00 0.00 4.63
2405 5059 1.275291 TGCTGGAGAAAACTACGGAGG 59.725 52.381 0.00 0.00 0.00 4.30
2406 5060 2.007547 GCTGGAGAAAACTACGGAGGC 61.008 57.143 0.00 0.00 0.00 4.70
2407 5061 1.275291 CTGGAGAAAACTACGGAGGCA 59.725 52.381 0.00 0.00 0.00 4.75
2408 5062 1.001633 TGGAGAAAACTACGGAGGCAC 59.998 52.381 0.00 0.00 0.00 5.01
2409 5063 1.001633 GGAGAAAACTACGGAGGCACA 59.998 52.381 0.00 0.00 0.00 4.57
2410 5064 2.549349 GGAGAAAACTACGGAGGCACAA 60.549 50.000 0.00 0.00 0.00 3.33
2411 5065 3.135994 GAGAAAACTACGGAGGCACAAA 58.864 45.455 0.00 0.00 0.00 2.83
2412 5066 3.139077 AGAAAACTACGGAGGCACAAAG 58.861 45.455 0.00 0.00 0.00 2.77
2413 5067 1.892209 AAACTACGGAGGCACAAAGG 58.108 50.000 0.00 0.00 0.00 3.11
2414 5068 0.605589 AACTACGGAGGCACAAAGGC 60.606 55.000 0.00 0.00 44.61 4.35
2421 5075 2.650196 GGCACAAAGGCGCAATCA 59.350 55.556 10.83 0.00 33.57 2.57
2422 5076 1.734117 GGCACAAAGGCGCAATCAC 60.734 57.895 10.83 0.00 33.57 3.06
2423 5077 1.286880 GCACAAAGGCGCAATCACT 59.713 52.632 10.83 0.00 0.00 3.41
2424 5078 0.730494 GCACAAAGGCGCAATCACTC 60.730 55.000 10.83 0.00 0.00 3.51
2425 5079 0.877071 CACAAAGGCGCAATCACTCT 59.123 50.000 10.83 0.00 0.00 3.24
2426 5080 0.877071 ACAAAGGCGCAATCACTCTG 59.123 50.000 10.83 0.00 0.00 3.35
2427 5081 1.159285 CAAAGGCGCAATCACTCTGA 58.841 50.000 10.83 0.00 0.00 3.27
2428 5082 1.741706 CAAAGGCGCAATCACTCTGAT 59.258 47.619 10.83 0.00 39.09 2.90
2429 5083 1.376543 AAGGCGCAATCACTCTGATG 58.623 50.000 10.83 0.00 37.15 3.07
2430 5084 0.463295 AGGCGCAATCACTCTGATGG 60.463 55.000 10.83 0.00 37.15 3.51
2431 5085 0.462581 GGCGCAATCACTCTGATGGA 60.463 55.000 10.83 0.00 37.15 3.41
2432 5086 0.935898 GCGCAATCACTCTGATGGAG 59.064 55.000 0.30 0.00 46.87 3.86
2433 5087 1.472201 GCGCAATCACTCTGATGGAGA 60.472 52.381 0.30 0.00 44.45 3.71
2434 5088 2.806019 GCGCAATCACTCTGATGGAGAT 60.806 50.000 0.30 0.00 44.45 2.75
2435 5089 2.801111 CGCAATCACTCTGATGGAGATG 59.199 50.000 0.00 0.00 44.45 2.90
2436 5090 3.740452 CGCAATCACTCTGATGGAGATGT 60.740 47.826 0.00 0.00 44.45 3.06
2437 5091 4.500375 CGCAATCACTCTGATGGAGATGTA 60.500 45.833 0.00 0.00 44.45 2.29
2438 5092 5.549347 GCAATCACTCTGATGGAGATGTAT 58.451 41.667 0.00 0.00 44.45 2.29
2439 5093 5.996513 GCAATCACTCTGATGGAGATGTATT 59.003 40.000 0.00 0.00 44.45 1.89
2440 5094 7.157347 GCAATCACTCTGATGGAGATGTATTA 58.843 38.462 0.00 0.00 44.45 0.98
2441 5095 7.117523 GCAATCACTCTGATGGAGATGTATTAC 59.882 40.741 0.00 0.00 44.45 1.89
2442 5096 7.846101 ATCACTCTGATGGAGATGTATTACA 57.154 36.000 0.00 0.00 44.45 2.41
2443 5097 7.660030 TCACTCTGATGGAGATGTATTACAA 57.340 36.000 0.00 0.00 44.45 2.41
2444 5098 7.720442 TCACTCTGATGGAGATGTATTACAAG 58.280 38.462 0.00 0.00 44.45 3.16
2445 5099 6.423302 CACTCTGATGGAGATGTATTACAAGC 59.577 42.308 0.00 0.00 44.45 4.01
2446 5100 6.098838 ACTCTGATGGAGATGTATTACAAGCA 59.901 38.462 0.00 0.00 44.45 3.91
2447 5101 6.283694 TCTGATGGAGATGTATTACAAGCAC 58.716 40.000 0.00 0.00 0.00 4.40
2448 5102 5.049828 TGATGGAGATGTATTACAAGCACG 58.950 41.667 0.00 0.00 0.00 5.34
2449 5103 4.729227 TGGAGATGTATTACAAGCACGA 57.271 40.909 0.00 0.00 0.00 4.35
2450 5104 4.682787 TGGAGATGTATTACAAGCACGAG 58.317 43.478 0.00 0.00 0.00 4.18
2451 5105 4.401202 TGGAGATGTATTACAAGCACGAGA 59.599 41.667 0.00 0.00 0.00 4.04
2452 5106 4.740695 GGAGATGTATTACAAGCACGAGAC 59.259 45.833 0.00 0.00 0.00 3.36
2453 5107 5.324784 AGATGTATTACAAGCACGAGACA 57.675 39.130 0.00 0.00 0.00 3.41
2454 5108 5.720202 AGATGTATTACAAGCACGAGACAA 58.280 37.500 0.00 0.00 0.00 3.18
2455 5109 5.577164 AGATGTATTACAAGCACGAGACAAC 59.423 40.000 0.00 0.00 0.00 3.32
2456 5110 4.623002 TGTATTACAAGCACGAGACAACA 58.377 39.130 0.00 0.00 0.00 3.33
2457 5111 4.684242 TGTATTACAAGCACGAGACAACAG 59.316 41.667 0.00 0.00 0.00 3.16
2458 5112 3.446310 TTACAAGCACGAGACAACAGA 57.554 42.857 0.00 0.00 0.00 3.41
2459 5113 2.533266 ACAAGCACGAGACAACAGAT 57.467 45.000 0.00 0.00 0.00 2.90
2460 5114 2.138320 ACAAGCACGAGACAACAGATG 58.862 47.619 0.00 0.00 0.00 2.90
2462 5116 3.243737 ACAAGCACGAGACAACAGATGTA 60.244 43.478 0.00 0.00 44.12 2.29
2463 5117 3.223423 AGCACGAGACAACAGATGTAG 57.777 47.619 0.00 0.00 44.12 2.74
2464 5118 2.558795 AGCACGAGACAACAGATGTAGT 59.441 45.455 0.00 0.00 44.12 2.73
2465 5119 3.756963 AGCACGAGACAACAGATGTAGTA 59.243 43.478 0.00 0.00 44.12 1.82
2466 5120 3.852536 GCACGAGACAACAGATGTAGTAC 59.147 47.826 0.00 0.00 44.12 2.73
2467 5121 4.615223 GCACGAGACAACAGATGTAGTACA 60.615 45.833 5.24 5.24 44.12 2.90
2468 5122 5.458015 CACGAGACAACAGATGTAGTACAA 58.542 41.667 7.16 0.00 44.12 2.41
2469 5123 5.918576 CACGAGACAACAGATGTAGTACAAA 59.081 40.000 7.16 0.00 44.12 2.83
2470 5124 6.088217 CACGAGACAACAGATGTAGTACAAAG 59.912 42.308 7.16 2.98 44.12 2.77
2471 5125 6.150318 CGAGACAACAGATGTAGTACAAAGT 58.850 40.000 7.16 3.61 44.12 2.66
2472 5126 6.641314 CGAGACAACAGATGTAGTACAAAGTT 59.359 38.462 7.16 9.39 44.12 2.66
2473 5127 7.358435 CGAGACAACAGATGTAGTACAAAGTTG 60.358 40.741 26.97 26.97 44.12 3.16
2474 5128 6.706270 AGACAACAGATGTAGTACAAAGTTGG 59.294 38.462 29.31 19.75 44.12 3.77
2475 5129 5.763204 ACAACAGATGTAGTACAAAGTTGGG 59.237 40.000 29.31 17.43 41.63 4.12
2476 5130 5.562298 ACAGATGTAGTACAAAGTTGGGT 57.438 39.130 7.16 0.00 0.00 4.51
2477 5131 5.548406 ACAGATGTAGTACAAAGTTGGGTC 58.452 41.667 7.16 0.00 0.00 4.46
2478 5132 5.071250 ACAGATGTAGTACAAAGTTGGGTCA 59.929 40.000 7.16 0.00 0.00 4.02
2479 5133 6.173339 CAGATGTAGTACAAAGTTGGGTCAT 58.827 40.000 7.16 0.00 0.00 3.06
2480 5134 6.313905 CAGATGTAGTACAAAGTTGGGTCATC 59.686 42.308 7.16 0.00 0.00 2.92
2481 5135 5.818678 TGTAGTACAAAGTTGGGTCATCT 57.181 39.130 0.00 0.00 0.00 2.90
2482 5136 6.921486 TGTAGTACAAAGTTGGGTCATCTA 57.079 37.500 0.00 0.00 0.00 1.98
2483 5137 7.490657 TGTAGTACAAAGTTGGGTCATCTAT 57.509 36.000 0.00 0.00 0.00 1.98
2484 5138 7.913789 TGTAGTACAAAGTTGGGTCATCTATT 58.086 34.615 0.00 0.00 0.00 1.73
2485 5139 8.380099 TGTAGTACAAAGTTGGGTCATCTATTT 58.620 33.333 0.00 0.00 0.00 1.40
2486 5140 9.227777 GTAGTACAAAGTTGGGTCATCTATTTT 57.772 33.333 0.00 0.00 0.00 1.82
2487 5141 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2488 5142 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2489 5143 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2490 5144 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2491 5145 7.235399 ACAAAGTTGGGTCATCTATTTTGGAAT 59.765 33.333 0.00 0.00 0.00 3.01
2492 5146 6.780457 AGTTGGGTCATCTATTTTGGAATG 57.220 37.500 0.00 0.00 0.00 2.67
2493 5147 5.658190 AGTTGGGTCATCTATTTTGGAATGG 59.342 40.000 0.00 0.00 0.00 3.16
2494 5148 5.464588 TGGGTCATCTATTTTGGAATGGA 57.535 39.130 0.00 0.00 37.20 3.41
2495 5149 5.448654 TGGGTCATCTATTTTGGAATGGAG 58.551 41.667 0.00 0.00 36.39 3.86
2496 5150 4.829492 GGGTCATCTATTTTGGAATGGAGG 59.171 45.833 0.00 0.00 36.39 4.30
2523 5177 5.351233 TGGCAAATTTACTAGAACACACG 57.649 39.130 0.00 0.00 0.00 4.49
2665 5319 3.608316 TTCACCTTATTTTGGCATGGC 57.392 42.857 13.29 13.29 0.00 4.40
2667 5321 2.902486 TCACCTTATTTTGGCATGGCAA 59.098 40.909 29.00 29.00 0.00 4.52
2668 5322 3.326006 TCACCTTATTTTGGCATGGCAAA 59.674 39.130 35.64 35.64 0.00 3.68
2669 5323 4.070716 CACCTTATTTTGGCATGGCAAAA 58.929 39.130 43.39 43.39 35.19 2.44
2691 5347 8.791675 CAAAATTTTTACCTTTATTGCCATGGT 58.208 29.630 14.67 0.00 35.05 3.55
2692 5348 7.920160 AATTTTTACCTTTATTGCCATGGTG 57.080 32.000 14.67 0.00 32.74 4.17
2693 5349 5.413309 TTTTACCTTTATTGCCATGGTGG 57.587 39.130 14.67 7.08 41.55 4.61
2768 5666 6.596309 TGTTGGCAATTGTTAATCCACATA 57.404 33.333 1.92 0.00 0.00 2.29
2770 5668 7.619050 TGTTGGCAATTGTTAATCCACATATT 58.381 30.769 1.92 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.826921 CTAACTAGGCCGAGCGGGA 60.827 63.158 13.48 0.00 38.47 5.14
2 3 2.125961 ACTAACTAGGCCGAGCGGG 61.126 63.158 13.48 5.48 39.58 6.13
3 4 1.065928 CACTAACTAGGCCGAGCGG 59.934 63.158 13.48 4.20 38.57 5.52
4 5 1.019673 TACACTAACTAGGCCGAGCG 58.980 55.000 13.48 4.40 0.00 5.03
5 6 1.268437 CGTACACTAACTAGGCCGAGC 60.268 57.143 13.48 0.00 0.00 5.03
6 7 2.012673 ACGTACACTAACTAGGCCGAG 58.987 52.381 11.86 11.86 0.00 4.63
7 8 2.009774 GACGTACACTAACTAGGCCGA 58.990 52.381 0.00 0.00 0.00 5.54
8 9 2.012673 AGACGTACACTAACTAGGCCG 58.987 52.381 0.00 0.00 0.00 6.13
9 10 5.764487 AATAGACGTACACTAACTAGGCC 57.236 43.478 0.00 0.00 0.00 5.19
10 11 6.020041 GCAAAATAGACGTACACTAACTAGGC 60.020 42.308 0.00 0.00 0.00 3.93
11 12 6.474751 GGCAAAATAGACGTACACTAACTAGG 59.525 42.308 0.00 0.00 0.00 3.02
12 13 7.256286 AGGCAAAATAGACGTACACTAACTAG 58.744 38.462 0.00 0.00 0.00 2.57
13 14 7.161773 AGGCAAAATAGACGTACACTAACTA 57.838 36.000 0.00 0.00 0.00 2.24
14 15 6.034161 AGGCAAAATAGACGTACACTAACT 57.966 37.500 0.00 0.00 0.00 2.24
15 16 6.716898 AAGGCAAAATAGACGTACACTAAC 57.283 37.500 0.00 0.00 0.00 2.34
16 17 9.439500 AATAAAGGCAAAATAGACGTACACTAA 57.561 29.630 0.00 0.00 0.00 2.24
17 18 9.439500 AAATAAAGGCAAAATAGACGTACACTA 57.561 29.630 0.00 0.00 0.00 2.74
18 19 7.916914 AATAAAGGCAAAATAGACGTACACT 57.083 32.000 0.00 0.00 0.00 3.55
19 20 9.481800 GTAAATAAAGGCAAAATAGACGTACAC 57.518 33.333 0.00 0.00 0.00 2.90
20 21 9.439500 AGTAAATAAAGGCAAAATAGACGTACA 57.561 29.630 0.00 0.00 0.00 2.90
21 22 9.698617 CAGTAAATAAAGGCAAAATAGACGTAC 57.301 33.333 0.00 0.00 0.00 3.67
22 23 8.392612 GCAGTAAATAAAGGCAAAATAGACGTA 58.607 33.333 0.00 0.00 0.00 3.57
23 24 7.120726 AGCAGTAAATAAAGGCAAAATAGACGT 59.879 33.333 0.00 0.00 0.00 4.34
24 25 7.429340 CAGCAGTAAATAAAGGCAAAATAGACG 59.571 37.037 0.00 0.00 0.00 4.18
25 26 8.244113 ACAGCAGTAAATAAAGGCAAAATAGAC 58.756 33.333 0.00 0.00 0.00 2.59
26 27 8.348285 ACAGCAGTAAATAAAGGCAAAATAGA 57.652 30.769 0.00 0.00 0.00 1.98
27 28 8.986477 AACAGCAGTAAATAAAGGCAAAATAG 57.014 30.769 0.00 0.00 0.00 1.73
32 33 9.627123 AGATATAACAGCAGTAAATAAAGGCAA 57.373 29.630 0.00 0.00 0.00 4.52
33 34 9.273016 GAGATATAACAGCAGTAAATAAAGGCA 57.727 33.333 0.00 0.00 0.00 4.75
34 35 9.495572 AGAGATATAACAGCAGTAAATAAAGGC 57.504 33.333 0.00 0.00 0.00 4.35
44 45 9.486497 CACAATGATAAGAGATATAACAGCAGT 57.514 33.333 0.00 0.00 0.00 4.40
45 46 8.441608 GCACAATGATAAGAGATATAACAGCAG 58.558 37.037 0.00 0.00 0.00 4.24
46 47 7.116805 CGCACAATGATAAGAGATATAACAGCA 59.883 37.037 0.00 0.00 0.00 4.41
47 48 7.116948 ACGCACAATGATAAGAGATATAACAGC 59.883 37.037 0.00 0.00 0.00 4.40
48 49 8.430828 CACGCACAATGATAAGAGATATAACAG 58.569 37.037 0.00 0.00 0.00 3.16
49 50 7.095649 GCACGCACAATGATAAGAGATATAACA 60.096 37.037 0.00 0.00 0.00 2.41
50 51 7.095649 TGCACGCACAATGATAAGAGATATAAC 60.096 37.037 0.00 0.00 0.00 1.89
51 52 6.928492 TGCACGCACAATGATAAGAGATATAA 59.072 34.615 0.00 0.00 0.00 0.98
52 53 6.454795 TGCACGCACAATGATAAGAGATATA 58.545 36.000 0.00 0.00 0.00 0.86
53 54 5.299949 TGCACGCACAATGATAAGAGATAT 58.700 37.500 0.00 0.00 0.00 1.63
54 55 4.692228 TGCACGCACAATGATAAGAGATA 58.308 39.130 0.00 0.00 0.00 1.98
55 56 3.534554 TGCACGCACAATGATAAGAGAT 58.465 40.909 0.00 0.00 0.00 2.75
56 57 2.971307 TGCACGCACAATGATAAGAGA 58.029 42.857 0.00 0.00 0.00 3.10
57 58 3.745332 TTGCACGCACAATGATAAGAG 57.255 42.857 0.00 0.00 0.00 2.85
58 59 5.296531 ACATATTGCACGCACAATGATAAGA 59.703 36.000 15.91 0.00 40.43 2.10
59 60 5.397240 CACATATTGCACGCACAATGATAAG 59.603 40.000 15.91 2.00 40.43 1.73
60 61 5.272397 CACATATTGCACGCACAATGATAA 58.728 37.500 15.91 0.00 40.43 1.75
61 62 4.846509 CACATATTGCACGCACAATGATA 58.153 39.130 15.91 2.28 40.43 2.15
62 63 3.697982 CACATATTGCACGCACAATGAT 58.302 40.909 15.91 0.27 40.43 2.45
63 64 3.134021 CACATATTGCACGCACAATGA 57.866 42.857 15.91 0.00 40.43 2.57
89 90 7.463961 ACTACTCCGTCCGATCAATATTAAT 57.536 36.000 0.00 0.00 0.00 1.40
155 161 0.526211 CCGTCATCTCCGTCAACTCA 59.474 55.000 0.00 0.00 0.00 3.41
156 162 0.809385 TCCGTCATCTCCGTCAACTC 59.191 55.000 0.00 0.00 0.00 3.01
157 163 0.811915 CTCCGTCATCTCCGTCAACT 59.188 55.000 0.00 0.00 0.00 3.16
158 164 0.802607 GCTCCGTCATCTCCGTCAAC 60.803 60.000 0.00 0.00 0.00 3.18
159 165 1.248101 TGCTCCGTCATCTCCGTCAA 61.248 55.000 0.00 0.00 0.00 3.18
197 203 5.547666 TGGGTCATGCCTCAGTTATATACAT 59.452 40.000 6.20 0.00 37.43 2.29
200 206 5.402630 TCTGGGTCATGCCTCAGTTATATA 58.597 41.667 3.10 0.00 37.07 0.86
201 207 4.234550 TCTGGGTCATGCCTCAGTTATAT 58.765 43.478 3.10 0.00 37.07 0.86
210 216 1.792757 TTGCCTTCTGGGTCATGCCT 61.793 55.000 6.20 0.00 37.43 4.75
243 249 5.757099 GGGCGCCCCACTTATATATATAT 57.243 43.478 36.64 10.10 44.65 0.86
288 294 4.385825 ACAAACAAGCGAGGAGATTTACA 58.614 39.130 0.00 0.00 0.00 2.41
358 364 7.224753 AGTGTCAACAGCGTTCTTATATTATGG 59.775 37.037 0.00 0.00 0.00 2.74
386 392 9.798994 ATATAAGAACGTTTTCTACACTACCTG 57.201 33.333 0.46 0.00 41.56 4.00
406 412 4.675038 ACTCCCTCCGTCCCTAATATAAG 58.325 47.826 0.00 0.00 0.00 1.73
421 428 6.410540 AGAGACAAACAAATGATACTCCCTC 58.589 40.000 0.00 0.00 0.00 4.30
479 486 1.153823 GCAGAGGAACGAAGCGCTA 60.154 57.895 12.05 0.00 0.00 4.26
615 712 4.586001 ACAGAAAAGTTGGCATGAATGAGT 59.414 37.500 0.00 0.00 0.00 3.41
674 771 8.087750 TCTGTCTCTCATCTTCTTTCTCTTTTC 58.912 37.037 0.00 0.00 0.00 2.29
704 836 5.232414 GCGTGTATCTGAATCTAACCTGTTC 59.768 44.000 0.00 0.00 0.00 3.18
732 869 0.035630 AGCAGAGGAGTTGGCATGAC 60.036 55.000 0.00 0.00 0.00 3.06
821 2282 2.797866 ATCGTGTGACGTCTCGTGCC 62.798 60.000 17.92 2.18 41.37 5.01
847 2308 9.240734 GGTACTGCTACCACTTATACACTATAT 57.759 37.037 0.00 0.00 42.16 0.86
849 2310 6.206243 CGGTACTGCTACCACTTATACACTAT 59.794 42.308 3.32 0.00 42.66 2.12
852 2313 4.604976 CGGTACTGCTACCACTTATACAC 58.395 47.826 3.32 0.00 42.66 2.90
854 2315 3.636381 GCGGTACTGCTACCACTTATAC 58.364 50.000 19.72 0.00 42.66 1.47
858 2436 1.214589 CGCGGTACTGCTACCACTT 59.785 57.895 23.76 0.00 42.66 3.16
870 2448 2.202690 CGATGACCAAGCGCGGTA 60.203 61.111 12.91 0.00 40.22 4.02
871 2449 3.989698 CTCGATGACCAAGCGCGGT 62.990 63.158 4.23 4.23 43.91 5.68
872 2450 3.257561 CTCGATGACCAAGCGCGG 61.258 66.667 8.83 0.00 0.00 6.46
875 2453 0.108615 AAGGACTCGATGACCAAGCG 60.109 55.000 0.00 0.00 32.90 4.68
884 2462 4.873746 TTCTGACTTCAAAGGACTCGAT 57.126 40.909 0.00 0.00 0.00 3.59
896 2474 6.364435 GCCTTGTTGATTGATTTTCTGACTTC 59.636 38.462 0.00 0.00 0.00 3.01
903 2483 3.253230 CCGGCCTTGTTGATTGATTTTC 58.747 45.455 0.00 0.00 0.00 2.29
939 2519 1.065854 CATCGGTCTCCTTTGCTCCTT 60.066 52.381 0.00 0.00 0.00 3.36
940 2520 0.539051 CATCGGTCTCCTTTGCTCCT 59.461 55.000 0.00 0.00 0.00 3.69
941 2521 0.250513 ACATCGGTCTCCTTTGCTCC 59.749 55.000 0.00 0.00 0.00 4.70
942 2522 1.734465 CAACATCGGTCTCCTTTGCTC 59.266 52.381 0.00 0.00 0.00 4.26
943 2523 1.347707 TCAACATCGGTCTCCTTTGCT 59.652 47.619 0.00 0.00 0.00 3.91
975 2556 1.247567 TCCTACTGCTTTGCTTTGCC 58.752 50.000 0.00 0.00 0.00 4.52
985 2566 0.548510 GCCATTCCCTTCCTACTGCT 59.451 55.000 0.00 0.00 0.00 4.24
986 2567 0.466372 GGCCATTCCCTTCCTACTGC 60.466 60.000 0.00 0.00 0.00 4.40
987 2568 0.179045 CGGCCATTCCCTTCCTACTG 60.179 60.000 2.24 0.00 0.00 2.74
988 2569 1.345715 CCGGCCATTCCCTTCCTACT 61.346 60.000 2.24 0.00 0.00 2.57
1020 2601 0.178981 ACATGCCCAGCAACTTCAGT 60.179 50.000 0.00 0.00 43.62 3.41
1297 2878 1.604378 CGGCCCAGAAGAGAACCAT 59.396 57.895 0.00 0.00 0.00 3.55
1299 2880 2.436824 GCGGCCCAGAAGAGAACC 60.437 66.667 0.00 0.00 0.00 3.62
1301 2882 0.321653 GAAAGCGGCCCAGAAGAGAA 60.322 55.000 0.00 0.00 0.00 2.87
1379 3226 0.580104 GGTATACATGAACGCACGCC 59.420 55.000 5.01 0.00 0.00 5.68
1384 3231 6.021596 CACTGAAAAAGGTATACATGAACGC 58.978 40.000 5.01 0.00 0.00 4.84
1386 3233 6.908825 TGCACTGAAAAAGGTATACATGAAC 58.091 36.000 5.01 0.00 0.00 3.18
1388 3235 5.123820 GCTGCACTGAAAAAGGTATACATGA 59.876 40.000 5.01 0.00 0.00 3.07
1389 3236 5.124457 AGCTGCACTGAAAAAGGTATACATG 59.876 40.000 5.01 0.00 0.00 3.21
1391 3238 4.651778 AGCTGCACTGAAAAAGGTATACA 58.348 39.130 5.01 0.00 0.00 2.29
1466 3315 2.586792 CGCCTTCTTCCTCCCCTG 59.413 66.667 0.00 0.00 0.00 4.45
1497 3346 0.827507 CAACACCCCCTCCAAGGTTG 60.828 60.000 0.00 0.00 32.72 3.77
1618 3467 1.903877 CGAAGGTCTGGAGCCCACAT 61.904 60.000 0.00 0.00 0.00 3.21
1806 3662 0.654472 CAGAACAAACACGCGACTGC 60.654 55.000 15.93 0.00 37.91 4.40
1813 3669 2.046313 GCTCATTGCAGAACAAACACG 58.954 47.619 0.00 0.00 42.86 4.49
1814 3670 2.046313 CGCTCATTGCAGAACAAACAC 58.954 47.619 0.00 0.00 42.86 3.32
1822 3678 4.765449 AGCCGCGCTCATTGCAGA 62.765 61.111 5.56 0.00 43.06 4.26
1830 3686 1.289109 TAGTTTGACAAGCCGCGCTC 61.289 55.000 5.56 0.00 38.25 5.03
1884 4405 5.758790 AATGCATCAGCTCTATGTATCCT 57.241 39.130 0.00 0.00 42.74 3.24
1885 4406 6.814506 AAAATGCATCAGCTCTATGTATCC 57.185 37.500 0.00 0.00 42.74 2.59
1911 4433 3.670627 GCGGATGGAAGTGAAAATGTGTC 60.671 47.826 0.00 0.00 0.00 3.67
1975 4497 2.107552 TGGGGTCGTGAAGATTTTCCTT 59.892 45.455 0.00 0.00 32.09 3.36
1976 4498 1.702957 TGGGGTCGTGAAGATTTTCCT 59.297 47.619 0.00 0.00 32.09 3.36
1989 4511 0.034059 GCTCATATCACCTGGGGTCG 59.966 60.000 0.00 0.00 31.02 4.79
1997 4519 0.870393 CGTGGCATGCTCATATCACC 59.130 55.000 18.92 0.00 0.00 4.02
2018 4540 3.804153 ATCTCCCTGCTCATGCGCG 62.804 63.158 0.00 0.00 43.34 6.86
2019 4541 1.099879 AAATCTCCCTGCTCATGCGC 61.100 55.000 0.00 0.00 43.34 6.09
2031 4553 5.532779 AGAAACCAAGACTTGTCAAATCTCC 59.467 40.000 14.03 0.00 0.00 3.71
2038 4560 3.118920 TGTCGAGAAACCAAGACTTGTCA 60.119 43.478 14.03 0.00 34.92 3.58
2087 4609 2.950781 TGCCGTCCTCTCATTAGATCT 58.049 47.619 0.00 0.00 0.00 2.75
2088 4610 3.583806 CATGCCGTCCTCTCATTAGATC 58.416 50.000 0.00 0.00 0.00 2.75
2090 4612 1.069204 GCATGCCGTCCTCTCATTAGA 59.931 52.381 6.36 0.00 0.00 2.10
2091 4613 1.069823 AGCATGCCGTCCTCTCATTAG 59.930 52.381 15.66 0.00 0.00 1.73
2092 4614 1.123077 AGCATGCCGTCCTCTCATTA 58.877 50.000 15.66 0.00 0.00 1.90
2093 4615 0.463295 CAGCATGCCGTCCTCTCATT 60.463 55.000 15.66 0.00 0.00 2.57
2094 4616 1.145598 CAGCATGCCGTCCTCTCAT 59.854 57.895 15.66 0.00 0.00 2.90
2125 4647 1.145759 CGTACGCATCAAGCCACGAT 61.146 55.000 0.52 0.00 45.74 3.73
2126 4648 1.803922 CGTACGCATCAAGCCACGA 60.804 57.895 0.52 0.00 45.74 4.35
2127 4649 2.695055 CGTACGCATCAAGCCACG 59.305 61.111 0.52 0.00 40.36 4.94
2146 4793 2.101575 TATCGCGACAGCCGTCAC 59.898 61.111 12.93 0.00 42.74 3.67
2149 4796 0.870307 GATTGTATCGCGACAGCCGT 60.870 55.000 12.93 0.00 41.18 5.68
2150 4797 1.548973 GGATTGTATCGCGACAGCCG 61.549 60.000 12.93 0.00 41.18 5.52
2261 4915 7.165812 GCATGGATTTGTACGATGATTTTGTAC 59.834 37.037 0.00 0.00 43.13 2.90
2262 4916 7.192913 GCATGGATTTGTACGATGATTTTGTA 58.807 34.615 0.00 0.00 0.00 2.41
2263 4917 6.035843 GCATGGATTTGTACGATGATTTTGT 58.964 36.000 0.00 0.00 0.00 2.83
2264 4918 5.171874 CGCATGGATTTGTACGATGATTTTG 59.828 40.000 0.00 0.00 0.00 2.44
2265 4919 5.273170 CGCATGGATTTGTACGATGATTTT 58.727 37.500 0.00 0.00 0.00 1.82
2266 4920 4.261155 CCGCATGGATTTGTACGATGATTT 60.261 41.667 0.00 0.00 37.49 2.17
2267 4921 3.250762 CCGCATGGATTTGTACGATGATT 59.749 43.478 0.00 0.00 37.49 2.57
2268 4922 2.807967 CCGCATGGATTTGTACGATGAT 59.192 45.455 0.00 0.00 37.49 2.45
2269 4923 2.209273 CCGCATGGATTTGTACGATGA 58.791 47.619 0.00 0.00 37.49 2.92
2270 4924 1.334059 GCCGCATGGATTTGTACGATG 60.334 52.381 0.00 0.00 37.49 3.84
2271 4925 0.944386 GCCGCATGGATTTGTACGAT 59.056 50.000 0.00 0.00 37.49 3.73
2272 4926 0.107897 AGCCGCATGGATTTGTACGA 60.108 50.000 0.00 0.00 37.49 3.43
2273 4927 0.027979 CAGCCGCATGGATTTGTACG 59.972 55.000 0.00 0.00 37.49 3.67
2274 4928 0.381801 CCAGCCGCATGGATTTGTAC 59.618 55.000 0.00 0.00 43.57 2.90
2275 4929 0.034574 ACCAGCCGCATGGATTTGTA 60.035 50.000 13.75 0.00 43.57 2.41
2276 4930 0.034574 TACCAGCCGCATGGATTTGT 60.035 50.000 13.75 0.00 43.57 2.83
2277 4931 0.381801 GTACCAGCCGCATGGATTTG 59.618 55.000 13.75 0.00 43.57 2.32
2278 4932 0.034574 TGTACCAGCCGCATGGATTT 60.035 50.000 13.75 0.00 43.57 2.17
2279 4933 0.034574 TTGTACCAGCCGCATGGATT 60.035 50.000 13.75 0.00 43.57 3.01
2280 4934 0.034574 TTTGTACCAGCCGCATGGAT 60.035 50.000 13.75 3.72 43.57 3.41
2281 4935 0.250945 TTTTGTACCAGCCGCATGGA 60.251 50.000 13.75 0.00 43.57 3.41
2282 4936 0.817013 ATTTTGTACCAGCCGCATGG 59.183 50.000 0.00 7.17 46.47 3.66
2283 4937 1.472082 TGATTTTGTACCAGCCGCATG 59.528 47.619 0.00 0.00 0.00 4.06
2284 4938 1.472480 GTGATTTTGTACCAGCCGCAT 59.528 47.619 0.00 0.00 0.00 4.73
2285 4939 0.878416 GTGATTTTGTACCAGCCGCA 59.122 50.000 0.00 0.00 0.00 5.69
2286 4940 0.179200 CGTGATTTTGTACCAGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
2287 4941 1.153353 ACGTGATTTTGTACCAGCCG 58.847 50.000 0.00 0.00 0.00 5.52
2288 4942 3.636282 AAACGTGATTTTGTACCAGCC 57.364 42.857 0.00 0.00 0.00 4.85
2308 4962 7.291566 TGTCTAACACTCTTTCCCCATAAAAA 58.708 34.615 0.00 0.00 0.00 1.94
2309 4963 6.843752 TGTCTAACACTCTTTCCCCATAAAA 58.156 36.000 0.00 0.00 0.00 1.52
2310 4964 6.442541 TGTCTAACACTCTTTCCCCATAAA 57.557 37.500 0.00 0.00 0.00 1.40
2311 4965 6.442541 TTGTCTAACACTCTTTCCCCATAA 57.557 37.500 0.00 0.00 0.00 1.90
2312 4966 6.442541 TTTGTCTAACACTCTTTCCCCATA 57.557 37.500 0.00 0.00 0.00 2.74
2313 4967 4.993705 TTGTCTAACACTCTTTCCCCAT 57.006 40.909 0.00 0.00 0.00 4.00
2314 4968 4.781775 TTTGTCTAACACTCTTTCCCCA 57.218 40.909 0.00 0.00 0.00 4.96
2315 4969 4.885325 TGTTTTGTCTAACACTCTTTCCCC 59.115 41.667 0.00 0.00 33.31 4.81
2316 4970 6.445357 TTGTTTTGTCTAACACTCTTTCCC 57.555 37.500 0.00 0.00 37.72 3.97
2317 4971 8.751302 TTTTTGTTTTGTCTAACACTCTTTCC 57.249 30.769 0.00 0.00 37.72 3.13
2323 4977 9.843334 TCGTTTATTTTTGTTTTGTCTAACACT 57.157 25.926 0.00 0.00 37.72 3.55
2329 4983 8.157183 CGTGTTTCGTTTATTTTTGTTTTGTCT 58.843 29.630 0.00 0.00 34.52 3.41
2330 4984 8.154666 TCGTGTTTCGTTTATTTTTGTTTTGTC 58.845 29.630 0.00 0.00 40.80 3.18
2331 4985 8.004585 TCGTGTTTCGTTTATTTTTGTTTTGT 57.995 26.923 0.00 0.00 40.80 2.83
2332 4986 8.366666 TCTCGTGTTTCGTTTATTTTTGTTTTG 58.633 29.630 0.00 0.00 40.80 2.44
2333 4987 8.450385 TCTCGTGTTTCGTTTATTTTTGTTTT 57.550 26.923 0.00 0.00 40.80 2.43
2334 4988 7.964011 TCTCTCGTGTTTCGTTTATTTTTGTTT 59.036 29.630 0.00 0.00 40.80 2.83
2335 4989 7.427318 GTCTCTCGTGTTTCGTTTATTTTTGTT 59.573 33.333 0.00 0.00 40.80 2.83
2336 4990 6.903479 GTCTCTCGTGTTTCGTTTATTTTTGT 59.097 34.615 0.00 0.00 40.80 2.83
2337 4991 6.902948 TGTCTCTCGTGTTTCGTTTATTTTTG 59.097 34.615 0.00 0.00 40.80 2.44
2338 4992 6.903479 GTGTCTCTCGTGTTTCGTTTATTTTT 59.097 34.615 0.00 0.00 40.80 1.94
2339 4993 6.036300 TGTGTCTCTCGTGTTTCGTTTATTTT 59.964 34.615 0.00 0.00 40.80 1.82
2340 4994 5.521010 TGTGTCTCTCGTGTTTCGTTTATTT 59.479 36.000 0.00 0.00 40.80 1.40
2341 4995 5.045215 TGTGTCTCTCGTGTTTCGTTTATT 58.955 37.500 0.00 0.00 40.80 1.40
2342 4996 4.613944 TGTGTCTCTCGTGTTTCGTTTAT 58.386 39.130 0.00 0.00 40.80 1.40
2343 4997 4.031418 TGTGTCTCTCGTGTTTCGTTTA 57.969 40.909 0.00 0.00 40.80 2.01
2344 4998 2.883574 TGTGTCTCTCGTGTTTCGTTT 58.116 42.857 0.00 0.00 40.80 3.60
2345 4999 2.572191 TGTGTCTCTCGTGTTTCGTT 57.428 45.000 0.00 0.00 40.80 3.85
2346 5000 2.572191 TTGTGTCTCTCGTGTTTCGT 57.428 45.000 0.00 0.00 40.80 3.85
2347 5001 4.452890 AATTTGTGTCTCTCGTGTTTCG 57.547 40.909 0.00 0.00 41.41 3.46
2348 5002 7.097570 CGTAAAAATTTGTGTCTCTCGTGTTTC 60.098 37.037 0.00 0.00 0.00 2.78
2349 5003 6.685403 CGTAAAAATTTGTGTCTCTCGTGTTT 59.315 34.615 0.00 0.00 0.00 2.83
2350 5004 6.183360 ACGTAAAAATTTGTGTCTCTCGTGTT 60.183 34.615 0.00 0.00 0.00 3.32
2351 5005 5.292589 ACGTAAAAATTTGTGTCTCTCGTGT 59.707 36.000 0.00 0.00 0.00 4.49
2352 5006 5.615581 CACGTAAAAATTTGTGTCTCTCGTG 59.384 40.000 0.00 0.00 37.87 4.35
2353 5007 5.277154 CCACGTAAAAATTTGTGTCTCTCGT 60.277 40.000 0.00 0.00 0.00 4.18
2354 5008 5.050634 TCCACGTAAAAATTTGTGTCTCTCG 60.051 40.000 0.00 0.00 0.00 4.04
2355 5009 6.295039 TCCACGTAAAAATTTGTGTCTCTC 57.705 37.500 0.00 0.00 0.00 3.20
2356 5010 6.687081 TTCCACGTAAAAATTTGTGTCTCT 57.313 33.333 0.00 0.00 0.00 3.10
2357 5011 6.197655 GGTTTCCACGTAAAAATTTGTGTCTC 59.802 38.462 0.00 0.00 0.00 3.36
2358 5012 6.037726 GGTTTCCACGTAAAAATTTGTGTCT 58.962 36.000 0.00 0.00 0.00 3.41
2359 5013 5.232626 GGGTTTCCACGTAAAAATTTGTGTC 59.767 40.000 0.00 0.00 0.00 3.67
2360 5014 5.105269 AGGGTTTCCACGTAAAAATTTGTGT 60.105 36.000 0.00 0.00 34.83 3.72
2361 5015 5.353111 AGGGTTTCCACGTAAAAATTTGTG 58.647 37.500 0.00 0.00 34.83 3.33
2362 5016 5.601583 AGGGTTTCCACGTAAAAATTTGT 57.398 34.783 0.00 0.00 34.83 2.83
2363 5017 5.277106 GCAAGGGTTTCCACGTAAAAATTTG 60.277 40.000 0.00 1.03 34.83 2.32
2364 5018 4.812091 GCAAGGGTTTCCACGTAAAAATTT 59.188 37.500 0.00 0.00 34.83 1.82
2365 5019 4.100344 AGCAAGGGTTTCCACGTAAAAATT 59.900 37.500 0.00 0.00 34.83 1.82
2366 5020 3.639561 AGCAAGGGTTTCCACGTAAAAAT 59.360 39.130 0.00 0.00 34.83 1.82
2367 5021 3.025262 AGCAAGGGTTTCCACGTAAAAA 58.975 40.909 0.00 0.00 34.83 1.94
2368 5022 2.359531 CAGCAAGGGTTTCCACGTAAAA 59.640 45.455 0.00 0.00 34.83 1.52
2369 5023 1.950909 CAGCAAGGGTTTCCACGTAAA 59.049 47.619 0.00 0.00 34.83 2.01
2370 5024 1.600023 CAGCAAGGGTTTCCACGTAA 58.400 50.000 0.00 0.00 34.83 3.18
2371 5025 0.250553 CCAGCAAGGGTTTCCACGTA 60.251 55.000 0.00 0.00 34.83 3.57
2372 5026 1.528309 CCAGCAAGGGTTTCCACGT 60.528 57.895 0.00 0.00 34.83 4.49
2373 5027 1.228124 TCCAGCAAGGGTTTCCACG 60.228 57.895 0.00 0.00 38.24 4.94
2374 5028 0.110486 TCTCCAGCAAGGGTTTCCAC 59.890 55.000 0.00 0.00 38.24 4.02
2375 5029 0.850100 TTCTCCAGCAAGGGTTTCCA 59.150 50.000 0.00 0.00 38.24 3.53
2376 5030 1.995376 TTTCTCCAGCAAGGGTTTCC 58.005 50.000 0.00 0.00 38.24 3.13
2377 5031 2.959030 AGTTTTCTCCAGCAAGGGTTTC 59.041 45.455 0.00 0.00 38.24 2.78
2378 5032 3.032265 AGTTTTCTCCAGCAAGGGTTT 57.968 42.857 0.00 0.00 38.24 3.27
2379 5033 2.755952 AGTTTTCTCCAGCAAGGGTT 57.244 45.000 0.00 0.00 38.24 4.11
2380 5034 2.550208 CGTAGTTTTCTCCAGCAAGGGT 60.550 50.000 0.00 0.00 38.24 4.34
2381 5035 2.076863 CGTAGTTTTCTCCAGCAAGGG 58.923 52.381 0.00 0.00 38.24 3.95
2382 5036 2.076863 CCGTAGTTTTCTCCAGCAAGG 58.923 52.381 0.00 0.00 39.47 3.61
2383 5037 2.996621 CTCCGTAGTTTTCTCCAGCAAG 59.003 50.000 0.00 0.00 0.00 4.01
2384 5038 2.289444 CCTCCGTAGTTTTCTCCAGCAA 60.289 50.000 0.00 0.00 0.00 3.91
2385 5039 1.275291 CCTCCGTAGTTTTCTCCAGCA 59.725 52.381 0.00 0.00 0.00 4.41
2386 5040 2.007547 GCCTCCGTAGTTTTCTCCAGC 61.008 57.143 0.00 0.00 0.00 4.85
2387 5041 1.275291 TGCCTCCGTAGTTTTCTCCAG 59.725 52.381 0.00 0.00 0.00 3.86
2388 5042 1.001633 GTGCCTCCGTAGTTTTCTCCA 59.998 52.381 0.00 0.00 0.00 3.86
2389 5043 1.001633 TGTGCCTCCGTAGTTTTCTCC 59.998 52.381 0.00 0.00 0.00 3.71
2390 5044 2.450609 TGTGCCTCCGTAGTTTTCTC 57.549 50.000 0.00 0.00 0.00 2.87
2391 5045 2.922740 TTGTGCCTCCGTAGTTTTCT 57.077 45.000 0.00 0.00 0.00 2.52
2392 5046 2.225727 CCTTTGTGCCTCCGTAGTTTTC 59.774 50.000 0.00 0.00 0.00 2.29
2393 5047 2.227194 CCTTTGTGCCTCCGTAGTTTT 58.773 47.619 0.00 0.00 0.00 2.43
2394 5048 1.892209 CCTTTGTGCCTCCGTAGTTT 58.108 50.000 0.00 0.00 0.00 2.66
2395 5049 0.605589 GCCTTTGTGCCTCCGTAGTT 60.606 55.000 0.00 0.00 0.00 2.24
2396 5050 1.003718 GCCTTTGTGCCTCCGTAGT 60.004 57.895 0.00 0.00 0.00 2.73
2397 5051 2.100631 CGCCTTTGTGCCTCCGTAG 61.101 63.158 0.00 0.00 0.00 3.51
2398 5052 2.047655 CGCCTTTGTGCCTCCGTA 60.048 61.111 0.00 0.00 0.00 4.02
2406 5060 0.877071 AGAGTGATTGCGCCTTTGTG 59.123 50.000 4.18 0.00 0.00 3.33
2407 5061 0.877071 CAGAGTGATTGCGCCTTTGT 59.123 50.000 4.18 0.00 0.00 2.83
2408 5062 1.159285 TCAGAGTGATTGCGCCTTTG 58.841 50.000 4.18 0.00 0.00 2.77
2409 5063 1.741706 CATCAGAGTGATTGCGCCTTT 59.258 47.619 4.18 0.00 34.28 3.11
2410 5064 1.376543 CATCAGAGTGATTGCGCCTT 58.623 50.000 4.18 0.00 34.28 4.35
2411 5065 0.463295 CCATCAGAGTGATTGCGCCT 60.463 55.000 4.18 0.00 34.28 5.52
2412 5066 0.462581 TCCATCAGAGTGATTGCGCC 60.463 55.000 4.18 0.00 34.28 6.53
2413 5067 0.935898 CTCCATCAGAGTGATTGCGC 59.064 55.000 0.00 0.00 34.28 6.09
2414 5068 2.591571 TCTCCATCAGAGTGATTGCG 57.408 50.000 0.00 0.00 43.71 4.85
2415 5069 3.806380 ACATCTCCATCAGAGTGATTGC 58.194 45.455 0.00 0.00 43.71 3.56
2416 5070 8.146412 TGTAATACATCTCCATCAGAGTGATTG 58.854 37.037 0.00 0.00 43.71 2.67
2417 5071 8.255111 TGTAATACATCTCCATCAGAGTGATT 57.745 34.615 0.00 0.00 43.71 2.57
2418 5072 7.846101 TGTAATACATCTCCATCAGAGTGAT 57.154 36.000 0.00 0.00 43.71 3.06
2419 5073 7.660030 TTGTAATACATCTCCATCAGAGTGA 57.340 36.000 0.00 0.00 43.71 3.41
2420 5074 6.423302 GCTTGTAATACATCTCCATCAGAGTG 59.577 42.308 0.00 0.00 43.71 3.51
2421 5075 6.098838 TGCTTGTAATACATCTCCATCAGAGT 59.901 38.462 0.00 0.00 43.71 3.24
2422 5076 6.423302 GTGCTTGTAATACATCTCCATCAGAG 59.577 42.308 0.00 0.00 44.75 3.35
2423 5077 6.283694 GTGCTTGTAATACATCTCCATCAGA 58.716 40.000 0.00 0.00 34.78 3.27
2424 5078 5.176406 CGTGCTTGTAATACATCTCCATCAG 59.824 44.000 0.00 0.00 0.00 2.90
2425 5079 5.049828 CGTGCTTGTAATACATCTCCATCA 58.950 41.667 0.00 0.00 0.00 3.07
2426 5080 5.289595 TCGTGCTTGTAATACATCTCCATC 58.710 41.667 0.00 0.00 0.00 3.51
2427 5081 5.069119 TCTCGTGCTTGTAATACATCTCCAT 59.931 40.000 0.00 0.00 0.00 3.41
2428 5082 4.401202 TCTCGTGCTTGTAATACATCTCCA 59.599 41.667 0.00 0.00 0.00 3.86
2429 5083 4.740695 GTCTCGTGCTTGTAATACATCTCC 59.259 45.833 0.00 0.00 0.00 3.71
2430 5084 5.340803 TGTCTCGTGCTTGTAATACATCTC 58.659 41.667 0.00 0.00 0.00 2.75
2431 5085 5.324784 TGTCTCGTGCTTGTAATACATCT 57.675 39.130 0.00 0.00 0.00 2.90
2432 5086 5.347635 TGTTGTCTCGTGCTTGTAATACATC 59.652 40.000 0.00 0.00 0.00 3.06
2433 5087 5.234752 TGTTGTCTCGTGCTTGTAATACAT 58.765 37.500 0.00 0.00 0.00 2.29
2434 5088 4.623002 TGTTGTCTCGTGCTTGTAATACA 58.377 39.130 0.00 0.00 0.00 2.29
2435 5089 4.921515 TCTGTTGTCTCGTGCTTGTAATAC 59.078 41.667 0.00 0.00 0.00 1.89
2436 5090 5.128992 TCTGTTGTCTCGTGCTTGTAATA 57.871 39.130 0.00 0.00 0.00 0.98
2437 5091 3.990092 TCTGTTGTCTCGTGCTTGTAAT 58.010 40.909 0.00 0.00 0.00 1.89
2438 5092 3.446310 TCTGTTGTCTCGTGCTTGTAA 57.554 42.857 0.00 0.00 0.00 2.41
2439 5093 3.243737 ACATCTGTTGTCTCGTGCTTGTA 60.244 43.478 0.00 0.00 30.89 2.41
2440 5094 2.138320 CATCTGTTGTCTCGTGCTTGT 58.862 47.619 0.00 0.00 0.00 3.16
2441 5095 2.138320 ACATCTGTTGTCTCGTGCTTG 58.862 47.619 0.00 0.00 30.89 4.01
2442 5096 2.533266 ACATCTGTTGTCTCGTGCTT 57.467 45.000 0.00 0.00 30.89 3.91
2443 5097 2.558795 ACTACATCTGTTGTCTCGTGCT 59.441 45.455 0.00 0.00 39.87 4.40
2444 5098 2.947852 ACTACATCTGTTGTCTCGTGC 58.052 47.619 0.00 0.00 39.87 5.34
2445 5099 5.043189 TGTACTACATCTGTTGTCTCGTG 57.957 43.478 0.74 0.00 39.87 4.35
2446 5100 5.700722 TTGTACTACATCTGTTGTCTCGT 57.299 39.130 0.74 0.00 39.87 4.18
2447 5101 6.150318 ACTTTGTACTACATCTGTTGTCTCG 58.850 40.000 0.74 0.00 39.87 4.04
2448 5102 7.095607 CCAACTTTGTACTACATCTGTTGTCTC 60.096 40.741 18.11 0.00 39.87 3.36
2449 5103 6.706270 CCAACTTTGTACTACATCTGTTGTCT 59.294 38.462 18.11 0.00 39.87 3.41
2450 5104 6.073222 CCCAACTTTGTACTACATCTGTTGTC 60.073 42.308 18.11 0.00 39.87 3.18
2451 5105 5.763204 CCCAACTTTGTACTACATCTGTTGT 59.237 40.000 18.11 3.12 42.62 3.32
2452 5106 5.763204 ACCCAACTTTGTACTACATCTGTTG 59.237 40.000 15.38 15.38 35.15 3.33
2453 5107 5.937111 ACCCAACTTTGTACTACATCTGTT 58.063 37.500 0.00 0.00 0.00 3.16
2454 5108 5.071250 TGACCCAACTTTGTACTACATCTGT 59.929 40.000 0.00 0.00 0.00 3.41
2455 5109 5.547465 TGACCCAACTTTGTACTACATCTG 58.453 41.667 0.00 0.00 0.00 2.90
2456 5110 5.818678 TGACCCAACTTTGTACTACATCT 57.181 39.130 0.00 0.00 0.00 2.90
2457 5111 6.407202 AGATGACCCAACTTTGTACTACATC 58.593 40.000 0.00 0.00 0.00 3.06
2458 5112 6.374417 AGATGACCCAACTTTGTACTACAT 57.626 37.500 0.00 0.00 0.00 2.29
2459 5113 5.818678 AGATGACCCAACTTTGTACTACA 57.181 39.130 0.00 0.00 0.00 2.74
2460 5114 8.788325 AAATAGATGACCCAACTTTGTACTAC 57.212 34.615 0.00 0.00 0.00 2.73
2461 5115 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2462 5116 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2463 5117 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2464 5118 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2465 5119 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2466 5120 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2467 5121 7.310609 CCATTCCAAAATAGATGACCCAACTTT 60.311 37.037 0.00 0.00 0.00 2.66
2468 5122 6.155049 CCATTCCAAAATAGATGACCCAACTT 59.845 38.462 0.00 0.00 0.00 2.66
2469 5123 5.658190 CCATTCCAAAATAGATGACCCAACT 59.342 40.000 0.00 0.00 0.00 3.16
2470 5124 5.656416 TCCATTCCAAAATAGATGACCCAAC 59.344 40.000 0.00 0.00 0.00 3.77
2471 5125 5.836705 TCCATTCCAAAATAGATGACCCAA 58.163 37.500 0.00 0.00 0.00 4.12
2472 5126 5.448654 CTCCATTCCAAAATAGATGACCCA 58.551 41.667 0.00 0.00 0.00 4.51
2473 5127 4.829492 CCTCCATTCCAAAATAGATGACCC 59.171 45.833 0.00 0.00 0.00 4.46
2474 5128 5.449553 ACCTCCATTCCAAAATAGATGACC 58.550 41.667 0.00 0.00 0.00 4.02
2475 5129 7.054124 TGTACCTCCATTCCAAAATAGATGAC 58.946 38.462 0.00 0.00 0.00 3.06
2476 5130 7.206789 TGTACCTCCATTCCAAAATAGATGA 57.793 36.000 0.00 0.00 0.00 2.92
2477 5131 7.040201 CCATGTACCTCCATTCCAAAATAGATG 60.040 40.741 0.00 0.00 0.00 2.90
2478 5132 7.006509 CCATGTACCTCCATTCCAAAATAGAT 58.993 38.462 0.00 0.00 0.00 1.98
2479 5133 6.364701 CCATGTACCTCCATTCCAAAATAGA 58.635 40.000 0.00 0.00 0.00 1.98
2480 5134 5.010012 GCCATGTACCTCCATTCCAAAATAG 59.990 44.000 0.00 0.00 0.00 1.73
2481 5135 4.892934 GCCATGTACCTCCATTCCAAAATA 59.107 41.667 0.00 0.00 0.00 1.40
2482 5136 3.706086 GCCATGTACCTCCATTCCAAAAT 59.294 43.478 0.00 0.00 0.00 1.82
2483 5137 3.096092 GCCATGTACCTCCATTCCAAAA 58.904 45.455 0.00 0.00 0.00 2.44
2484 5138 2.042297 TGCCATGTACCTCCATTCCAAA 59.958 45.455 0.00 0.00 0.00 3.28
2485 5139 1.638070 TGCCATGTACCTCCATTCCAA 59.362 47.619 0.00 0.00 0.00 3.53
2486 5140 1.294041 TGCCATGTACCTCCATTCCA 58.706 50.000 0.00 0.00 0.00 3.53
2487 5141 2.435372 TTGCCATGTACCTCCATTCC 57.565 50.000 0.00 0.00 0.00 3.01
2488 5142 5.343307 AAATTTGCCATGTACCTCCATTC 57.657 39.130 0.00 0.00 0.00 2.67
2489 5143 5.957774 AGTAAATTTGCCATGTACCTCCATT 59.042 36.000 0.00 0.00 0.00 3.16
2490 5144 5.518865 AGTAAATTTGCCATGTACCTCCAT 58.481 37.500 0.00 0.00 0.00 3.41
2491 5145 4.929479 AGTAAATTTGCCATGTACCTCCA 58.071 39.130 0.00 0.00 0.00 3.86
2492 5146 6.354130 TCTAGTAAATTTGCCATGTACCTCC 58.646 40.000 0.00 0.00 0.00 4.30
2493 5147 7.335924 TGTTCTAGTAAATTTGCCATGTACCTC 59.664 37.037 0.00 0.00 0.00 3.85
2494 5148 7.120726 GTGTTCTAGTAAATTTGCCATGTACCT 59.879 37.037 0.00 0.00 0.00 3.08
2495 5149 7.094549 TGTGTTCTAGTAAATTTGCCATGTACC 60.095 37.037 0.00 0.00 0.00 3.34
2496 5150 7.749126 GTGTGTTCTAGTAAATTTGCCATGTAC 59.251 37.037 0.00 0.00 0.00 2.90
2633 5287 5.760484 AATAAGGTGAAATTTGGCATGGT 57.240 34.783 0.00 0.00 0.00 3.55
2665 5319 8.791675 ACCATGGCAATAAAGGTAAAAATTTTG 58.208 29.630 13.04 0.00 0.00 2.44
2667 5321 7.392953 CCACCATGGCAATAAAGGTAAAAATTT 59.607 33.333 13.04 0.00 0.00 1.82
2668 5322 6.883756 CCACCATGGCAATAAAGGTAAAAATT 59.116 34.615 13.04 0.00 0.00 1.82
2669 5323 6.413892 CCACCATGGCAATAAAGGTAAAAAT 58.586 36.000 13.04 0.00 0.00 1.82
2705 5603 2.566913 AGTGTACCATGTGCGTTCAAA 58.433 42.857 0.00 0.00 0.00 2.69
2768 5666 3.610637 GTGTGCATGGTGGCAAAAT 57.389 47.368 0.00 0.00 46.93 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.