Multiple sequence alignment - TraesCS5D01G023600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G023600 chr5D 100.000 2333 0 0 1 2333 18340032 18337700 0.000000e+00 4309
1 TraesCS5D01G023600 chr5D 90.780 282 20 5 2055 2333 84919591 84919869 2.830000e-99 372
2 TraesCS5D01G023600 chr5D 85.970 335 34 10 2005 2333 543750175 543749848 1.720000e-91 346
3 TraesCS5D01G023600 chr3A 93.983 1263 62 6 461 1722 91488008 91486759 0.000000e+00 1899
4 TraesCS5D01G023600 chr3A 94.100 339 15 3 1740 2078 91486772 91486439 5.750000e-141 510
5 TraesCS5D01G023600 chr3A 90.643 171 12 4 1910 2078 64012953 64013121 8.390000e-55 224
6 TraesCS5D01G023600 chr4D 95.097 1081 51 2 637 1717 393773620 393774698 0.000000e+00 1701
7 TraesCS5D01G023600 chr4D 94.437 791 41 3 934 1722 367778128 367778917 0.000000e+00 1214
8 TraesCS5D01G023600 chr4D 94.474 760 41 1 964 1722 238028100 238028859 0.000000e+00 1170
9 TraesCS5D01G023600 chr4D 93.126 451 17 6 462 910 367777700 367778138 0.000000e+00 649
10 TraesCS5D01G023600 chr4D 94.395 339 16 1 1740 2078 367778904 367779239 3.440000e-143 518
11 TraesCS5D01G023600 chr4D 93.860 342 15 3 1740 2078 393774690 393775028 5.750000e-141 510
12 TraesCS5D01G023600 chr4D 93.585 265 12 4 2072 2333 367779408 367779670 7.820000e-105 390
13 TraesCS5D01G023600 chr4D 92.075 265 17 3 2072 2333 238029345 238029608 1.020000e-98 370
14 TraesCS5D01G023600 chr4D 90.960 177 9 3 749 925 238027938 238028107 5.010000e-57 231
15 TraesCS5D01G023600 chr4D 94.444 126 7 0 461 586 393721557 393721682 6.580000e-46 195
16 TraesCS5D01G023600 chr1A 94.962 397 17 3 1328 1722 405025407 405025012 9.160000e-174 619
17 TraesCS5D01G023600 chr1A 91.451 386 26 4 461 846 405051948 405051570 7.390000e-145 523
18 TraesCS5D01G023600 chr1A 94.395 339 15 2 1740 2078 405025025 405024691 3.440000e-143 518
19 TraesCS5D01G023600 chr1A 90.160 376 17 2 842 1217 405025771 405025416 2.710000e-129 472
20 TraesCS5D01G023600 chr1A 92.424 264 12 5 2072 2333 405024522 405024265 1.020000e-98 370
21 TraesCS5D01G023600 chr1A 85.088 342 36 12 1999 2333 371515790 371516123 3.710000e-88 335
22 TraesCS5D01G023600 chr4A 92.239 335 22 2 1745 2078 74644942 74644611 2.710000e-129 472
23 TraesCS5D01G023600 chr4A 93.939 264 13 2 2072 2333 74644443 74644181 1.680000e-106 396
24 TraesCS5D01G023600 chr4A 86.186 333 30 13 2007 2333 646110271 646110593 1.720000e-91 346
25 TraesCS5D01G023600 chr4A 96.914 162 4 1 1532 1692 74645122 74644961 1.060000e-68 270
26 TraesCS5D01G023600 chr4A 94.074 135 8 0 460 594 74786047 74785913 3.040000e-49 206
27 TraesCS5D01G023600 chr4A 95.745 94 4 0 589 682 74783369 74783276 4.020000e-33 152
28 TraesCS5D01G023600 chr7A 85.088 342 36 12 1999 2333 156552317 156552650 3.710000e-88 335
29 TraesCS5D01G023600 chr7A 89.017 173 16 3 1908 2078 156552074 156552245 6.530000e-51 211
30 TraesCS5D01G023600 chr2B 86.275 255 29 3 1824 2078 761248973 761249221 2.950000e-69 272
31 TraesCS5D01G023600 chr2B 84.351 262 35 3 1824 2085 761288370 761288625 3.850000e-63 252
32 TraesCS5D01G023600 chr2B 92.727 110 6 1 1531 1640 761248853 761248960 8.630000e-35 158
33 TraesCS5D01G023600 chr1B 88.667 150 14 1 1740 1889 610149486 610149340 1.840000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G023600 chr5D 18337700 18340032 2332 True 4309.000000 4309 100.00000 1 2333 1 chr5D.!!$R1 2332
1 TraesCS5D01G023600 chr3A 91486439 91488008 1569 True 1204.500000 1899 94.04150 461 2078 2 chr3A.!!$R1 1617
2 TraesCS5D01G023600 chr4D 393773620 393775028 1408 False 1105.500000 1701 94.47850 637 2078 2 chr4D.!!$F4 1441
3 TraesCS5D01G023600 chr4D 367777700 367779670 1970 False 692.750000 1214 93.88575 462 2333 4 chr4D.!!$F3 1871
4 TraesCS5D01G023600 chr4D 238027938 238029608 1670 False 590.333333 1170 92.50300 749 2333 3 chr4D.!!$F2 1584
5 TraesCS5D01G023600 chr1A 405024265 405025771 1506 True 494.750000 619 92.98525 842 2333 4 chr1A.!!$R2 1491
6 TraesCS5D01G023600 chr4A 74644181 74645122 941 True 379.333333 472 94.36400 1532 2333 3 chr4A.!!$R1 801
7 TraesCS5D01G023600 chr7A 156552074 156552650 576 False 273.000000 335 87.05250 1908 2333 2 chr7A.!!$F1 425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.032813 CTCCTACCGGTGAAGGGGTA 60.033 60.0 21.01 3.71 37.75 3.69 F
361 362 0.108585 ACGTCAACCACTCTGCCAAT 59.891 50.0 0.00 0.00 0.00 3.16 F
362 363 0.798776 CGTCAACCACTCTGCCAATC 59.201 55.0 0.00 0.00 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1303 0.246635 CGTTGACAAGGGGAGTCGAT 59.753 55.000 0.0 0.0 38.83 3.59 R
1313 1315 3.150458 TCTAGGAAGGAGACGTTGACA 57.850 47.619 0.0 0.0 0.00 3.58 R
1426 1429 3.259374 TCCTCTTCTGTCCAGTAAAGCAG 59.741 47.826 0.0 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.356313 CAACACGCACTCTCGCCT 60.356 61.111 0.00 0.00 0.00 5.52
18 19 2.049063 AACACGCACTCTCGCCTC 60.049 61.111 0.00 0.00 0.00 4.70
19 20 3.575351 AACACGCACTCTCGCCTCC 62.575 63.158 0.00 0.00 0.00 4.30
32 33 3.217743 CCTCCGAGGCCTCCGTAC 61.218 72.222 27.20 2.27 0.00 3.67
33 34 2.439701 CTCCGAGGCCTCCGTACA 60.440 66.667 27.20 4.05 0.00 2.90
34 35 1.828660 CTCCGAGGCCTCCGTACAT 60.829 63.158 27.20 0.00 0.00 2.29
35 36 1.797211 CTCCGAGGCCTCCGTACATC 61.797 65.000 27.20 0.10 0.00 3.06
36 37 2.331805 CGAGGCCTCCGTACATCG 59.668 66.667 27.20 9.87 39.52 3.84
37 38 2.478890 CGAGGCCTCCGTACATCGT 61.479 63.158 27.20 0.00 37.94 3.73
38 39 1.359475 GAGGCCTCCGTACATCGTC 59.641 63.158 23.19 0.00 37.94 4.20
39 40 1.076923 AGGCCTCCGTACATCGTCT 60.077 57.895 0.00 0.00 37.94 4.18
40 41 0.182061 AGGCCTCCGTACATCGTCTA 59.818 55.000 0.00 0.00 37.94 2.59
41 42 1.202903 AGGCCTCCGTACATCGTCTAT 60.203 52.381 0.00 0.00 37.94 1.98
42 43 1.068472 GGCCTCCGTACATCGTCTATG 60.068 57.143 0.00 0.00 41.74 2.23
43 44 1.666311 GCCTCCGTACATCGTCTATGC 60.666 57.143 0.00 0.00 39.39 3.14
44 45 1.880675 CCTCCGTACATCGTCTATGCT 59.119 52.381 0.00 0.00 39.39 3.79
45 46 2.350868 CCTCCGTACATCGTCTATGCTG 60.351 54.545 0.00 0.00 39.39 4.41
46 47 1.001706 TCCGTACATCGTCTATGCTGC 60.002 52.381 0.00 0.00 39.39 5.25
47 48 1.409412 CGTACATCGTCTATGCTGCC 58.591 55.000 0.00 0.00 39.39 4.85
48 49 1.001268 CGTACATCGTCTATGCTGCCT 60.001 52.381 0.00 0.00 39.39 4.75
49 50 2.398498 GTACATCGTCTATGCTGCCTG 58.602 52.381 0.00 0.00 39.39 4.85
50 51 0.531532 ACATCGTCTATGCTGCCTGC 60.532 55.000 0.00 0.00 39.39 4.85
59 60 2.260434 GCTGCCTGCACAACCATG 59.740 61.111 0.00 0.00 42.31 3.66
60 61 2.967397 CTGCCTGCACAACCATGG 59.033 61.111 11.19 11.19 0.00 3.66
61 62 3.291101 CTGCCTGCACAACCATGGC 62.291 63.158 13.04 4.02 43.49 4.40
62 63 4.073200 GCCTGCACAACCATGGCC 62.073 66.667 13.04 0.00 37.81 5.36
63 64 2.601067 CCTGCACAACCATGGCCA 60.601 61.111 13.04 8.56 0.00 5.36
64 65 2.652530 CTGCACAACCATGGCCAC 59.347 61.111 8.16 0.00 0.00 5.01
65 66 2.123554 TGCACAACCATGGCCACA 60.124 55.556 8.16 0.00 0.00 4.17
66 67 1.746322 CTGCACAACCATGGCCACAA 61.746 55.000 8.16 0.00 0.00 3.33
67 68 1.005867 GCACAACCATGGCCACAAG 60.006 57.895 8.16 1.30 0.00 3.16
68 69 1.462731 GCACAACCATGGCCACAAGA 61.463 55.000 8.16 0.00 0.00 3.02
69 70 0.314935 CACAACCATGGCCACAAGAC 59.685 55.000 8.16 0.00 0.00 3.01
70 71 0.827507 ACAACCATGGCCACAAGACC 60.828 55.000 8.16 0.00 0.00 3.85
71 72 0.827089 CAACCATGGCCACAAGACCA 60.827 55.000 8.16 0.00 41.06 4.02
72 73 0.827507 AACCATGGCCACAAGACCAC 60.828 55.000 8.16 0.00 39.19 4.16
73 74 1.228521 CCATGGCCACAAGACCACA 60.229 57.895 8.16 0.00 39.19 4.17
74 75 1.526575 CCATGGCCACAAGACCACAC 61.527 60.000 8.16 0.00 39.19 3.82
75 76 1.228552 ATGGCCACAAGACCACACC 60.229 57.895 8.16 0.00 39.19 4.16
76 77 1.719063 ATGGCCACAAGACCACACCT 61.719 55.000 8.16 0.00 39.19 4.00
77 78 1.898574 GGCCACAAGACCACACCTG 60.899 63.158 0.00 0.00 0.00 4.00
78 79 1.148273 GCCACAAGACCACACCTGA 59.852 57.895 0.00 0.00 0.00 3.86
79 80 0.886490 GCCACAAGACCACACCTGAG 60.886 60.000 0.00 0.00 0.00 3.35
80 81 0.758734 CCACAAGACCACACCTGAGA 59.241 55.000 0.00 0.00 0.00 3.27
81 82 1.541233 CCACAAGACCACACCTGAGAC 60.541 57.143 0.00 0.00 0.00 3.36
82 83 0.389391 ACAAGACCACACCTGAGACG 59.611 55.000 0.00 0.00 0.00 4.18
83 84 0.389391 CAAGACCACACCTGAGACGT 59.611 55.000 0.00 0.00 0.00 4.34
84 85 0.389391 AAGACCACACCTGAGACGTG 59.611 55.000 0.00 0.00 37.26 4.49
85 86 0.467474 AGACCACACCTGAGACGTGA 60.467 55.000 0.00 0.00 35.17 4.35
86 87 0.039074 GACCACACCTGAGACGTGAG 60.039 60.000 0.00 0.00 35.17 3.51
87 88 1.373497 CCACACCTGAGACGTGAGC 60.373 63.158 0.00 0.00 35.17 4.26
88 89 1.662608 CACACCTGAGACGTGAGCT 59.337 57.895 0.00 0.00 35.17 4.09
89 90 0.387878 CACACCTGAGACGTGAGCTC 60.388 60.000 6.82 6.82 35.17 4.09
90 91 1.214062 CACCTGAGACGTGAGCTCC 59.786 63.158 12.15 1.40 34.69 4.70
91 92 2.336478 ACCTGAGACGTGAGCTCCG 61.336 63.158 19.02 19.02 34.69 4.63
92 93 2.202544 CTGAGACGTGAGCTCCGC 60.203 66.667 20.11 14.24 34.69 5.54
93 94 3.691744 CTGAGACGTGAGCTCCGCC 62.692 68.421 20.11 12.23 34.69 6.13
94 95 4.500116 GAGACGTGAGCTCCGCCC 62.500 72.222 20.11 13.85 0.00 6.13
99 100 4.803426 GTGAGCTCCGCCCACGAG 62.803 72.222 12.15 0.00 43.93 4.18
117 118 2.509336 CGTCATCGCTCCCACCAC 60.509 66.667 0.00 0.00 0.00 4.16
118 119 2.982130 GTCATCGCTCCCACCACT 59.018 61.111 0.00 0.00 0.00 4.00
119 120 1.663379 CGTCATCGCTCCCACCACTA 61.663 60.000 0.00 0.00 0.00 2.74
120 121 0.103208 GTCATCGCTCCCACCACTAG 59.897 60.000 0.00 0.00 0.00 2.57
121 122 1.043116 TCATCGCTCCCACCACTAGG 61.043 60.000 0.00 0.00 42.21 3.02
123 124 4.162690 CGCTCCCACCACTAGGGC 62.163 72.222 0.00 0.00 46.36 5.19
124 125 3.798511 GCTCCCACCACTAGGGCC 61.799 72.222 0.00 0.00 46.36 5.80
125 126 3.470888 CTCCCACCACTAGGGCCG 61.471 72.222 0.00 0.00 46.36 6.13
129 130 4.778143 CACCACTAGGGCCGCCAC 62.778 72.222 12.58 0.31 42.05 5.01
147 148 4.195334 GCCGGCATCCCAGACCAT 62.195 66.667 24.80 0.00 0.00 3.55
148 149 2.203252 CCGGCATCCCAGACCATG 60.203 66.667 0.00 0.00 0.00 3.66
149 150 2.591753 CGGCATCCCAGACCATGT 59.408 61.111 0.00 0.00 0.00 3.21
150 151 1.077501 CGGCATCCCAGACCATGTT 60.078 57.895 0.00 0.00 0.00 2.71
151 152 0.680921 CGGCATCCCAGACCATGTTT 60.681 55.000 0.00 0.00 0.00 2.83
152 153 1.106285 GGCATCCCAGACCATGTTTC 58.894 55.000 0.00 0.00 0.00 2.78
153 154 1.106285 GCATCCCAGACCATGTTTCC 58.894 55.000 0.00 0.00 0.00 3.13
154 155 1.341383 GCATCCCAGACCATGTTTCCT 60.341 52.381 0.00 0.00 0.00 3.36
155 156 2.648059 CATCCCAGACCATGTTTCCTC 58.352 52.381 0.00 0.00 0.00 3.71
156 157 0.991920 TCCCAGACCATGTTTCCTCC 59.008 55.000 0.00 0.00 0.00 4.30
157 158 0.392998 CCCAGACCATGTTTCCTCCG 60.393 60.000 0.00 0.00 0.00 4.63
158 159 1.026718 CCAGACCATGTTTCCTCCGC 61.027 60.000 0.00 0.00 0.00 5.54
159 160 1.026718 CAGACCATGTTTCCTCCGCC 61.027 60.000 0.00 0.00 0.00 6.13
160 161 2.046314 ACCATGTTTCCTCCGCCG 60.046 61.111 0.00 0.00 0.00 6.46
161 162 3.508840 CCATGTTTCCTCCGCCGC 61.509 66.667 0.00 0.00 0.00 6.53
162 163 3.508840 CATGTTTCCTCCGCCGCC 61.509 66.667 0.00 0.00 0.00 6.13
163 164 4.028490 ATGTTTCCTCCGCCGCCA 62.028 61.111 0.00 0.00 0.00 5.69
174 175 3.988525 GCCGCCACCATGCACAAA 61.989 61.111 0.00 0.00 0.00 2.83
175 176 2.049248 CCGCCACCATGCACAAAC 60.049 61.111 0.00 0.00 0.00 2.93
176 177 2.726909 CGCCACCATGCACAAACA 59.273 55.556 0.00 0.00 0.00 2.83
177 178 1.661197 CGCCACCATGCACAAACAC 60.661 57.895 0.00 0.00 0.00 3.32
178 179 1.300853 GCCACCATGCACAAACACC 60.301 57.895 0.00 0.00 0.00 4.16
179 180 1.747325 GCCACCATGCACAAACACCT 61.747 55.000 0.00 0.00 0.00 4.00
180 181 0.314935 CCACCATGCACAAACACCTC 59.685 55.000 0.00 0.00 0.00 3.85
181 182 0.314935 CACCATGCACAAACACCTCC 59.685 55.000 0.00 0.00 0.00 4.30
182 183 0.185901 ACCATGCACAAACACCTCCT 59.814 50.000 0.00 0.00 0.00 3.69
183 184 1.423541 ACCATGCACAAACACCTCCTA 59.576 47.619 0.00 0.00 0.00 2.94
184 185 1.812571 CCATGCACAAACACCTCCTAC 59.187 52.381 0.00 0.00 0.00 3.18
185 186 1.812571 CATGCACAAACACCTCCTACC 59.187 52.381 0.00 0.00 0.00 3.18
186 187 0.250124 TGCACAAACACCTCCTACCG 60.250 55.000 0.00 0.00 0.00 4.02
187 188 0.953960 GCACAAACACCTCCTACCGG 60.954 60.000 0.00 0.00 0.00 5.28
188 189 0.395312 CACAAACACCTCCTACCGGT 59.605 55.000 13.98 13.98 34.38 5.28
193 194 4.455366 ACCTCCTACCGGTGAAGG 57.545 61.111 19.93 21.89 32.41 3.46
194 195 1.305887 ACCTCCTACCGGTGAAGGG 60.306 63.158 26.22 20.53 32.41 3.95
195 196 2.064581 CCTCCTACCGGTGAAGGGG 61.065 68.421 21.01 18.40 33.40 4.79
196 197 1.305887 CTCCTACCGGTGAAGGGGT 60.306 63.158 21.01 0.00 40.35 4.95
197 198 0.032813 CTCCTACCGGTGAAGGGGTA 60.033 60.000 21.01 3.71 37.75 3.69
200 201 4.982459 ACCGGTGAAGGGGTAGAA 57.018 55.556 6.12 0.00 33.95 2.10
201 202 1.856629 TACCGGTGAAGGGGTAGAAG 58.143 55.000 19.93 0.00 37.75 2.85
202 203 0.908180 ACCGGTGAAGGGGTAGAAGG 60.908 60.000 6.12 0.00 33.95 3.46
203 204 1.221021 CGGTGAAGGGGTAGAAGGC 59.779 63.158 0.00 0.00 0.00 4.35
204 205 1.265454 CGGTGAAGGGGTAGAAGGCT 61.265 60.000 0.00 0.00 0.00 4.58
205 206 0.542333 GGTGAAGGGGTAGAAGGCTC 59.458 60.000 0.00 0.00 0.00 4.70
206 207 0.542333 GTGAAGGGGTAGAAGGCTCC 59.458 60.000 0.00 0.00 0.00 4.70
207 208 0.417841 TGAAGGGGTAGAAGGCTCCT 59.582 55.000 0.00 0.00 0.00 3.69
208 209 1.124780 GAAGGGGTAGAAGGCTCCTC 58.875 60.000 0.00 0.00 0.00 3.71
209 210 0.326713 AAGGGGTAGAAGGCTCCTCC 60.327 60.000 0.00 0.00 0.00 4.30
219 220 2.344093 AGGCTCCTCCTTCTAACCAA 57.656 50.000 0.00 0.00 44.75 3.67
220 221 2.632537 AGGCTCCTCCTTCTAACCAAA 58.367 47.619 0.00 0.00 44.75 3.28
221 222 2.573915 AGGCTCCTCCTTCTAACCAAAG 59.426 50.000 0.00 0.00 44.75 2.77
222 223 2.360844 GCTCCTCCTTCTAACCAAAGC 58.639 52.381 0.00 0.00 0.00 3.51
223 224 2.290323 GCTCCTCCTTCTAACCAAAGCA 60.290 50.000 0.00 0.00 0.00 3.91
224 225 3.810743 GCTCCTCCTTCTAACCAAAGCAA 60.811 47.826 0.00 0.00 0.00 3.91
225 226 4.006319 CTCCTCCTTCTAACCAAAGCAAG 58.994 47.826 0.00 0.00 0.00 4.01
226 227 2.489722 CCTCCTTCTAACCAAAGCAAGC 59.510 50.000 0.00 0.00 0.00 4.01
227 228 2.489722 CTCCTTCTAACCAAAGCAAGCC 59.510 50.000 0.00 0.00 0.00 4.35
228 229 1.546029 CCTTCTAACCAAAGCAAGCCC 59.454 52.381 0.00 0.00 0.00 5.19
229 230 1.546029 CTTCTAACCAAAGCAAGCCCC 59.454 52.381 0.00 0.00 0.00 5.80
230 231 0.777446 TCTAACCAAAGCAAGCCCCT 59.223 50.000 0.00 0.00 0.00 4.79
231 232 1.146982 TCTAACCAAAGCAAGCCCCTT 59.853 47.619 0.00 0.00 0.00 3.95
232 233 1.273327 CTAACCAAAGCAAGCCCCTTG 59.727 52.381 0.74 0.74 43.57 3.61
233 234 1.410050 AACCAAAGCAAGCCCCTTGG 61.410 55.000 13.52 13.52 41.31 3.61
248 249 3.380471 CCTTGGTGGGGATATTGTCAA 57.620 47.619 0.00 0.00 0.00 3.18
249 250 3.023832 CCTTGGTGGGGATATTGTCAAC 58.976 50.000 0.00 0.00 0.00 3.18
250 251 2.818751 TGGTGGGGATATTGTCAACC 57.181 50.000 0.00 0.00 0.00 3.77
251 252 1.065053 TGGTGGGGATATTGTCAACCG 60.065 52.381 0.00 0.00 32.11 4.44
252 253 1.675552 GTGGGGATATTGTCAACCGG 58.324 55.000 0.00 0.00 0.00 5.28
253 254 0.548989 TGGGGATATTGTCAACCGGG 59.451 55.000 6.32 0.00 0.00 5.73
254 255 0.549469 GGGGATATTGTCAACCGGGT 59.451 55.000 6.32 0.00 0.00 5.28
255 256 1.476291 GGGGATATTGTCAACCGGGTC 60.476 57.143 6.32 0.00 0.00 4.46
256 257 1.210967 GGGATATTGTCAACCGGGTCA 59.789 52.381 6.32 0.00 0.00 4.02
257 258 2.356330 GGGATATTGTCAACCGGGTCAA 60.356 50.000 6.32 0.00 0.00 3.18
258 259 3.349022 GGATATTGTCAACCGGGTCAAA 58.651 45.455 6.32 0.00 0.00 2.69
259 260 3.951680 GGATATTGTCAACCGGGTCAAAT 59.048 43.478 6.32 0.77 0.00 2.32
260 261 4.401202 GGATATTGTCAACCGGGTCAAATT 59.599 41.667 6.32 0.00 0.00 1.82
261 262 5.105513 GGATATTGTCAACCGGGTCAAATTT 60.106 40.000 6.32 0.00 0.00 1.82
262 263 3.444703 TTGTCAACCGGGTCAAATTTG 57.555 42.857 12.15 12.15 0.00 2.32
263 264 2.656002 TGTCAACCGGGTCAAATTTGA 58.344 42.857 16.91 16.91 34.20 2.69
264 265 2.621055 TGTCAACCGGGTCAAATTTGAG 59.379 45.455 21.05 11.77 37.98 3.02
273 274 3.363341 GTCAAATTTGAGCACGGGAAA 57.637 42.857 21.05 0.00 37.98 3.13
274 275 3.308530 GTCAAATTTGAGCACGGGAAAG 58.691 45.455 21.05 0.00 37.98 2.62
275 276 3.004315 GTCAAATTTGAGCACGGGAAAGA 59.996 43.478 21.05 0.00 37.98 2.52
276 277 3.634448 TCAAATTTGAGCACGGGAAAGAA 59.366 39.130 16.91 0.00 32.50 2.52
277 278 3.923017 AATTTGAGCACGGGAAAGAAG 57.077 42.857 0.00 0.00 0.00 2.85
278 279 1.604604 TTTGAGCACGGGAAAGAAGG 58.395 50.000 0.00 0.00 0.00 3.46
279 280 0.889186 TTGAGCACGGGAAAGAAGGC 60.889 55.000 0.00 0.00 0.00 4.35
280 281 2.358737 AGCACGGGAAAGAAGGCG 60.359 61.111 0.00 0.00 0.00 5.52
281 282 3.431725 GCACGGGAAAGAAGGCGG 61.432 66.667 0.00 0.00 0.00 6.13
282 283 2.032071 CACGGGAAAGAAGGCGGT 59.968 61.111 0.00 0.00 0.00 5.68
283 284 2.032071 ACGGGAAAGAAGGCGGTG 59.968 61.111 0.00 0.00 0.00 4.94
284 285 2.746277 CGGGAAAGAAGGCGGTGG 60.746 66.667 0.00 0.00 0.00 4.61
285 286 2.434774 GGGAAAGAAGGCGGTGGT 59.565 61.111 0.00 0.00 0.00 4.16
286 287 1.674651 GGGAAAGAAGGCGGTGGTC 60.675 63.158 0.00 0.00 0.00 4.02
287 288 2.033194 GGAAAGAAGGCGGTGGTCG 61.033 63.158 0.00 0.00 42.76 4.79
318 319 2.267961 GGCCACCCGAGACGAAAT 59.732 61.111 0.00 0.00 0.00 2.17
319 320 2.106683 GGCCACCCGAGACGAAATG 61.107 63.158 0.00 0.00 0.00 2.32
320 321 2.750888 GCCACCCGAGACGAAATGC 61.751 63.158 0.00 0.00 0.00 3.56
321 322 1.375396 CCACCCGAGACGAAATGCA 60.375 57.895 0.00 0.00 0.00 3.96
322 323 0.744414 CCACCCGAGACGAAATGCAT 60.744 55.000 0.00 0.00 0.00 3.96
323 324 1.086696 CACCCGAGACGAAATGCATT 58.913 50.000 5.99 5.99 0.00 3.56
324 325 1.468520 CACCCGAGACGAAATGCATTT 59.531 47.619 24.33 24.33 0.00 2.32
325 326 2.095263 CACCCGAGACGAAATGCATTTT 60.095 45.455 24.81 11.00 0.00 1.82
326 327 2.095263 ACCCGAGACGAAATGCATTTTG 60.095 45.455 29.90 29.90 37.23 2.44
327 328 2.161410 CCCGAGACGAAATGCATTTTGA 59.839 45.455 35.55 0.00 35.58 2.69
328 329 3.419915 CCGAGACGAAATGCATTTTGAG 58.580 45.455 35.55 25.52 35.58 3.02
329 330 2.842485 CGAGACGAAATGCATTTTGAGC 59.158 45.455 35.55 27.02 35.58 4.26
330 331 2.842485 GAGACGAAATGCATTTTGAGCG 59.158 45.455 35.55 28.68 35.58 5.03
331 332 2.483877 AGACGAAATGCATTTTGAGCGA 59.516 40.909 35.55 0.00 35.58 4.93
332 333 2.584791 ACGAAATGCATTTTGAGCGAC 58.415 42.857 35.55 17.46 35.58 5.19
333 334 2.031245 ACGAAATGCATTTTGAGCGACA 60.031 40.909 35.55 0.00 35.58 4.35
334 335 3.173599 CGAAATGCATTTTGAGCGACAT 58.826 40.909 28.52 3.18 33.87 3.06
335 336 4.142708 ACGAAATGCATTTTGAGCGACATA 60.143 37.500 35.55 0.00 35.58 2.29
336 337 4.971830 CGAAATGCATTTTGAGCGACATAT 59.028 37.500 28.52 2.45 33.87 1.78
337 338 5.114572 CGAAATGCATTTTGAGCGACATATC 59.885 40.000 28.52 10.45 33.87 1.63
338 339 5.503662 AATGCATTTTGAGCGACATATCA 57.496 34.783 5.99 0.00 33.85 2.15
339 340 4.541085 TGCATTTTGAGCGACATATCAG 57.459 40.909 0.00 0.00 33.85 2.90
340 341 4.190772 TGCATTTTGAGCGACATATCAGA 58.809 39.130 0.00 0.00 33.85 3.27
341 342 4.271776 TGCATTTTGAGCGACATATCAGAG 59.728 41.667 0.00 0.00 33.85 3.35
342 343 4.509230 GCATTTTGAGCGACATATCAGAGA 59.491 41.667 0.00 0.00 0.00 3.10
343 344 5.557893 GCATTTTGAGCGACATATCAGAGAC 60.558 44.000 0.00 0.00 0.00 3.36
344 345 3.340337 TTGAGCGACATATCAGAGACG 57.660 47.619 0.00 0.00 0.00 4.18
345 346 2.289565 TGAGCGACATATCAGAGACGT 58.710 47.619 0.00 0.00 0.00 4.34
346 347 2.288186 TGAGCGACATATCAGAGACGTC 59.712 50.000 7.70 7.70 0.00 4.34
347 348 2.288186 GAGCGACATATCAGAGACGTCA 59.712 50.000 19.50 0.00 0.00 4.35
348 349 2.683362 AGCGACATATCAGAGACGTCAA 59.317 45.455 19.50 0.01 0.00 3.18
349 350 2.784380 GCGACATATCAGAGACGTCAAC 59.216 50.000 19.50 11.35 0.00 3.18
350 351 3.364062 CGACATATCAGAGACGTCAACC 58.636 50.000 19.50 6.42 0.00 3.77
351 352 3.181500 CGACATATCAGAGACGTCAACCA 60.181 47.826 19.50 0.00 0.00 3.67
352 353 4.106197 GACATATCAGAGACGTCAACCAC 58.894 47.826 19.50 3.64 0.00 4.16
353 354 3.764434 ACATATCAGAGACGTCAACCACT 59.236 43.478 19.50 5.92 0.00 4.00
354 355 4.142359 ACATATCAGAGACGTCAACCACTC 60.142 45.833 19.50 5.17 0.00 3.51
355 356 1.982660 TCAGAGACGTCAACCACTCT 58.017 50.000 19.50 7.65 39.82 3.24
356 357 2.057503 CAGAGACGTCAACCACTCTG 57.942 55.000 19.50 16.09 46.12 3.35
357 358 0.315568 AGAGACGTCAACCACTCTGC 59.684 55.000 19.50 0.00 38.14 4.26
358 359 0.667792 GAGACGTCAACCACTCTGCC 60.668 60.000 19.50 0.00 0.00 4.85
359 360 1.069090 GACGTCAACCACTCTGCCA 59.931 57.895 11.55 0.00 0.00 4.92
360 361 0.531974 GACGTCAACCACTCTGCCAA 60.532 55.000 11.55 0.00 0.00 4.52
361 362 0.108585 ACGTCAACCACTCTGCCAAT 59.891 50.000 0.00 0.00 0.00 3.16
362 363 0.798776 CGTCAACCACTCTGCCAATC 59.201 55.000 0.00 0.00 0.00 2.67
363 364 1.877680 CGTCAACCACTCTGCCAATCA 60.878 52.381 0.00 0.00 0.00 2.57
364 365 1.537202 GTCAACCACTCTGCCAATCAC 59.463 52.381 0.00 0.00 0.00 3.06
365 366 1.142667 TCAACCACTCTGCCAATCACA 59.857 47.619 0.00 0.00 0.00 3.58
366 367 2.165167 CAACCACTCTGCCAATCACAT 58.835 47.619 0.00 0.00 0.00 3.21
367 368 3.008923 TCAACCACTCTGCCAATCACATA 59.991 43.478 0.00 0.00 0.00 2.29
368 369 3.939740 ACCACTCTGCCAATCACATAT 57.060 42.857 0.00 0.00 0.00 1.78
369 370 3.548770 ACCACTCTGCCAATCACATATG 58.451 45.455 0.00 0.00 0.00 1.78
370 371 3.200605 ACCACTCTGCCAATCACATATGA 59.799 43.478 10.38 0.00 39.83 2.15
371 372 4.201657 CCACTCTGCCAATCACATATGAA 58.798 43.478 10.38 0.00 38.69 2.57
372 373 4.641541 CCACTCTGCCAATCACATATGAAA 59.358 41.667 10.38 0.00 38.69 2.69
373 374 5.449588 CCACTCTGCCAATCACATATGAAAC 60.450 44.000 10.38 0.00 38.69 2.78
374 375 4.333649 ACTCTGCCAATCACATATGAAACG 59.666 41.667 10.38 0.00 38.69 3.60
375 376 3.627123 TCTGCCAATCACATATGAAACGG 59.373 43.478 10.38 4.32 38.69 4.44
376 377 3.615155 TGCCAATCACATATGAAACGGA 58.385 40.909 10.38 0.00 38.69 4.69
377 378 3.376859 TGCCAATCACATATGAAACGGAC 59.623 43.478 10.38 1.32 38.69 4.79
378 379 3.376859 GCCAATCACATATGAAACGGACA 59.623 43.478 10.38 0.00 38.69 4.02
379 380 4.142491 GCCAATCACATATGAAACGGACAA 60.142 41.667 10.38 0.00 38.69 3.18
380 381 5.621104 GCCAATCACATATGAAACGGACAAA 60.621 40.000 10.38 0.00 38.69 2.83
381 382 6.385843 CCAATCACATATGAAACGGACAAAA 58.614 36.000 10.38 0.00 38.69 2.44
382 383 6.865726 CCAATCACATATGAAACGGACAAAAA 59.134 34.615 10.38 0.00 38.69 1.94
383 384 7.148820 CCAATCACATATGAAACGGACAAAAAC 60.149 37.037 10.38 0.00 38.69 2.43
384 385 6.378710 TCACATATGAAACGGACAAAAACA 57.621 33.333 10.38 0.00 0.00 2.83
385 386 6.976088 TCACATATGAAACGGACAAAAACAT 58.024 32.000 10.38 0.00 0.00 2.71
386 387 8.100508 TCACATATGAAACGGACAAAAACATA 57.899 30.769 10.38 0.00 0.00 2.29
387 388 8.568794 TCACATATGAAACGGACAAAAACATAA 58.431 29.630 10.38 0.00 0.00 1.90
388 389 8.849490 CACATATGAAACGGACAAAAACATAAG 58.151 33.333 10.38 0.00 0.00 1.73
389 390 8.026607 ACATATGAAACGGACAAAAACATAAGG 58.973 33.333 10.38 0.00 0.00 2.69
390 391 6.642707 ATGAAACGGACAAAAACATAAGGA 57.357 33.333 0.00 0.00 0.00 3.36
391 392 6.452494 TGAAACGGACAAAAACATAAGGAA 57.548 33.333 0.00 0.00 0.00 3.36
392 393 6.864342 TGAAACGGACAAAAACATAAGGAAA 58.136 32.000 0.00 0.00 0.00 3.13
393 394 6.752815 TGAAACGGACAAAAACATAAGGAAAC 59.247 34.615 0.00 0.00 0.00 2.78
394 395 4.851010 ACGGACAAAAACATAAGGAAACG 58.149 39.130 0.00 0.00 0.00 3.60
395 396 4.575645 ACGGACAAAAACATAAGGAAACGA 59.424 37.500 0.00 0.00 0.00 3.85
396 397 4.907582 CGGACAAAAACATAAGGAAACGAC 59.092 41.667 0.00 0.00 0.00 4.34
397 398 5.504337 CGGACAAAAACATAAGGAAACGACA 60.504 40.000 0.00 0.00 0.00 4.35
398 399 6.443792 GGACAAAAACATAAGGAAACGACAT 58.556 36.000 0.00 0.00 0.00 3.06
399 400 6.921307 GGACAAAAACATAAGGAAACGACATT 59.079 34.615 0.00 0.00 0.00 2.71
400 401 8.077386 GGACAAAAACATAAGGAAACGACATTA 58.923 33.333 0.00 0.00 0.00 1.90
401 402 9.453325 GACAAAAACATAAGGAAACGACATTAA 57.547 29.630 0.00 0.00 0.00 1.40
402 403 9.804758 ACAAAAACATAAGGAAACGACATTAAA 57.195 25.926 0.00 0.00 0.00 1.52
425 426 6.993175 AAAAATTCAGACGAAAAAGCTAGC 57.007 33.333 6.62 6.62 34.01 3.42
426 427 5.689383 AAATTCAGACGAAAAAGCTAGCA 57.311 34.783 18.83 0.00 34.01 3.49
427 428 5.886960 AATTCAGACGAAAAAGCTAGCAT 57.113 34.783 18.83 0.65 34.01 3.79
428 429 4.668576 TTCAGACGAAAAAGCTAGCATG 57.331 40.909 18.83 2.00 0.00 4.06
429 430 3.002791 TCAGACGAAAAAGCTAGCATGG 58.997 45.455 18.83 4.03 0.00 3.66
430 431 3.002791 CAGACGAAAAAGCTAGCATGGA 58.997 45.455 18.83 0.00 0.00 3.41
431 432 3.436704 CAGACGAAAAAGCTAGCATGGAA 59.563 43.478 18.83 0.00 0.00 3.53
432 433 4.072131 AGACGAAAAAGCTAGCATGGAAA 58.928 39.130 18.83 0.00 0.00 3.13
433 434 4.154918 AGACGAAAAAGCTAGCATGGAAAG 59.845 41.667 18.83 5.04 0.00 2.62
434 435 4.072131 ACGAAAAAGCTAGCATGGAAAGA 58.928 39.130 18.83 0.00 0.00 2.52
435 436 4.154918 ACGAAAAAGCTAGCATGGAAAGAG 59.845 41.667 18.83 2.21 0.00 2.85
436 437 4.393062 CGAAAAAGCTAGCATGGAAAGAGA 59.607 41.667 18.83 0.00 0.00 3.10
437 438 5.065731 CGAAAAAGCTAGCATGGAAAGAGAT 59.934 40.000 18.83 0.00 0.00 2.75
438 439 6.448207 AAAAAGCTAGCATGGAAAGAGATC 57.552 37.500 18.83 0.00 0.00 2.75
439 440 4.767578 AAGCTAGCATGGAAAGAGATCA 57.232 40.909 18.83 0.00 0.00 2.92
440 441 4.070630 AGCTAGCATGGAAAGAGATCAC 57.929 45.455 18.83 0.00 0.00 3.06
441 442 2.799412 GCTAGCATGGAAAGAGATCACG 59.201 50.000 10.63 0.00 0.00 4.35
442 443 3.739519 GCTAGCATGGAAAGAGATCACGT 60.740 47.826 10.63 0.00 0.00 4.49
443 444 4.499865 GCTAGCATGGAAAGAGATCACGTA 60.500 45.833 10.63 0.00 0.00 3.57
444 445 3.786635 AGCATGGAAAGAGATCACGTAC 58.213 45.455 0.00 0.00 0.00 3.67
445 446 3.449018 AGCATGGAAAGAGATCACGTACT 59.551 43.478 0.00 0.00 0.00 2.73
446 447 4.645136 AGCATGGAAAGAGATCACGTACTA 59.355 41.667 0.00 0.00 0.00 1.82
447 448 5.127194 AGCATGGAAAGAGATCACGTACTAA 59.873 40.000 0.00 0.00 0.00 2.24
448 449 5.232414 GCATGGAAAGAGATCACGTACTAAC 59.768 44.000 0.00 0.00 0.00 2.34
449 450 5.970317 TGGAAAGAGATCACGTACTAACA 57.030 39.130 0.00 0.00 0.00 2.41
450 451 6.335471 TGGAAAGAGATCACGTACTAACAA 57.665 37.500 0.00 0.00 0.00 2.83
451 452 6.751157 TGGAAAGAGATCACGTACTAACAAA 58.249 36.000 0.00 0.00 0.00 2.83
452 453 7.383687 TGGAAAGAGATCACGTACTAACAAAT 58.616 34.615 0.00 0.00 0.00 2.32
453 454 8.525316 TGGAAAGAGATCACGTACTAACAAATA 58.475 33.333 0.00 0.00 0.00 1.40
454 455 9.362539 GGAAAGAGATCACGTACTAACAAATAA 57.637 33.333 0.00 0.00 0.00 1.40
458 459 9.701098 AGAGATCACGTACTAACAAATAAAACA 57.299 29.630 0.00 0.00 0.00 2.83
539 541 2.696187 TGCCATACGATACCTTAGCACA 59.304 45.455 0.00 0.00 0.00 4.57
572 574 2.949451 ATCCAGTGTCACGTCATCTC 57.051 50.000 0.00 0.00 0.00 2.75
610 612 4.629523 GCCCCAACACCCGAACGA 62.630 66.667 0.00 0.00 0.00 3.85
611 613 2.667199 CCCCAACACCCGAACGAC 60.667 66.667 0.00 0.00 0.00 4.34
612 614 2.667199 CCCAACACCCGAACGACC 60.667 66.667 0.00 0.00 0.00 4.79
613 615 2.109387 CCAACACCCGAACGACCA 59.891 61.111 0.00 0.00 0.00 4.02
614 616 2.248835 CCAACACCCGAACGACCAC 61.249 63.158 0.00 0.00 0.00 4.16
615 617 2.279650 AACACCCGAACGACCACG 60.280 61.111 0.00 0.00 45.75 4.94
873 875 3.775654 GGCGACTCCCAGTCCCAG 61.776 72.222 0.00 0.00 42.12 4.45
1120 1122 1.374343 CCGATGGTCTCTTCGTCCGA 61.374 60.000 0.00 0.00 38.42 4.55
1266 1268 1.071071 TCACGATGGGGTTCGAACTTT 59.929 47.619 26.32 9.92 41.62 2.66
1313 1315 1.045911 GCCAGAGATCGACTCCCCTT 61.046 60.000 10.24 0.00 45.96 3.95
1373 1376 2.358267 GCCTCTACTCTGCTAACGCTAA 59.642 50.000 0.00 0.00 36.97 3.09
1374 1377 3.181489 GCCTCTACTCTGCTAACGCTAAA 60.181 47.826 0.00 0.00 36.97 1.85
1375 1378 4.677250 GCCTCTACTCTGCTAACGCTAAAA 60.677 45.833 0.00 0.00 36.97 1.52
1426 1429 7.117812 TGCTTACTAAGACTAAATTGTGAGTGC 59.882 37.037 0.00 0.00 0.00 4.40
1451 1454 4.021016 GCTTTACTGGACAGAAGAGGAGAA 60.021 45.833 6.29 0.00 0.00 2.87
1712 1717 9.991906 TTTGTTAACTTAGCTACATACTGAAGT 57.008 29.630 7.22 0.00 0.00 3.01
1713 1718 9.991906 TTGTTAACTTAGCTACATACTGAAGTT 57.008 29.630 7.22 10.80 39.66 2.66
1723 1728 8.468399 AGCTACATACTGAAGTTAGTTTAGTCC 58.532 37.037 0.38 0.00 36.44 3.85
1724 1729 7.705752 GCTACATACTGAAGTTAGTTTAGTCCC 59.294 40.741 0.38 0.00 36.44 4.46
1725 1730 6.944096 ACATACTGAAGTTAGTTTAGTCCCC 58.056 40.000 0.38 0.00 36.44 4.81
1726 1731 4.904895 ACTGAAGTTAGTTTAGTCCCCC 57.095 45.455 0.00 0.00 28.95 5.40
1727 1732 4.500452 ACTGAAGTTAGTTTAGTCCCCCT 58.500 43.478 0.00 0.00 28.95 4.79
1728 1733 4.531339 ACTGAAGTTAGTTTAGTCCCCCTC 59.469 45.833 0.00 0.00 28.95 4.30
1729 1734 4.495565 TGAAGTTAGTTTAGTCCCCCTCA 58.504 43.478 0.00 0.00 0.00 3.86
1730 1735 4.909088 TGAAGTTAGTTTAGTCCCCCTCAA 59.091 41.667 0.00 0.00 0.00 3.02
1731 1736 5.370289 TGAAGTTAGTTTAGTCCCCCTCAAA 59.630 40.000 0.00 0.00 0.00 2.69
1732 1737 5.917545 AGTTAGTTTAGTCCCCCTCAAAA 57.082 39.130 0.00 0.00 0.00 2.44
1733 1738 6.270219 AGTTAGTTTAGTCCCCCTCAAAAA 57.730 37.500 0.00 0.00 0.00 1.94
1789 1800 7.824779 CCTGAGGTTCTGCTTAAAATAGTTACT 59.175 37.037 0.00 0.00 0.00 2.24
1854 1865 5.060662 TCCTCGAGAATAGACACAGTTTG 57.939 43.478 15.71 0.00 0.00 2.93
1859 1870 4.867047 CGAGAATAGACACAGTTTGCATCT 59.133 41.667 0.00 0.00 0.00 2.90
1860 1871 5.349817 CGAGAATAGACACAGTTTGCATCTT 59.650 40.000 0.00 0.00 0.00 2.40
1861 1872 6.492007 AGAATAGACACAGTTTGCATCTTG 57.508 37.500 0.00 0.00 0.00 3.02
1952 1964 6.173339 TCTTAAATTTGCCCTCTCACTGTAG 58.827 40.000 0.00 0.00 0.00 2.74
1956 1968 2.009681 TGCCCTCTCACTGTAGAACA 57.990 50.000 0.00 0.00 0.00 3.18
1996 2008 9.288576 CTTGGAAGATGGCAAATATACTTATCA 57.711 33.333 0.00 0.00 0.00 2.15
2078 2090 6.514947 CAACTTTTGAGTTTTGGATCATGGA 58.485 36.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.057428 GGAGGCGAGAGTGCGTGT 62.057 66.667 0.00 0.00 35.06 4.49
5 6 4.544689 CTCGGAGGCGAGAGTGCG 62.545 72.222 0.00 0.00 38.18 5.34
6 7 4.200283 CCTCGGAGGCGAGAGTGC 62.200 72.222 11.83 0.00 38.18 4.40
15 16 3.217743 GTACGGAGGCCTCGGAGG 61.218 72.222 38.47 23.92 38.80 4.30
16 17 1.797211 GATGTACGGAGGCCTCGGAG 61.797 65.000 38.47 27.48 34.51 4.63
17 18 1.826921 GATGTACGGAGGCCTCGGA 60.827 63.158 38.47 23.27 34.51 4.55
18 19 2.728817 GATGTACGGAGGCCTCGG 59.271 66.667 32.44 32.44 36.21 4.63
19 20 2.331805 CGATGTACGGAGGCCTCG 59.668 66.667 26.36 22.21 38.46 4.63
29 30 2.398498 CAGGCAGCATAGACGATGTAC 58.602 52.381 0.00 0.00 37.90 2.90
30 31 1.269778 GCAGGCAGCATAGACGATGTA 60.270 52.381 0.00 0.00 44.79 2.29
31 32 0.531532 GCAGGCAGCATAGACGATGT 60.532 55.000 0.00 0.00 44.79 3.06
32 33 2.232750 GCAGGCAGCATAGACGATG 58.767 57.895 0.00 0.00 44.79 3.84
33 34 4.766970 GCAGGCAGCATAGACGAT 57.233 55.556 0.00 0.00 44.79 3.73
42 43 2.260434 CATGGTTGTGCAGGCAGC 59.740 61.111 0.00 0.00 45.96 5.25
43 44 2.967397 CCATGGTTGTGCAGGCAG 59.033 61.111 2.57 0.00 0.00 4.85
44 45 3.304721 GCCATGGTTGTGCAGGCA 61.305 61.111 14.67 0.00 44.59 4.75
45 46 4.073200 GGCCATGGTTGTGCAGGC 62.073 66.667 14.67 2.37 44.48 4.85
46 47 2.601067 TGGCCATGGTTGTGCAGG 60.601 61.111 14.67 0.00 0.00 4.85
47 48 1.746322 TTGTGGCCATGGTTGTGCAG 61.746 55.000 9.72 0.00 0.00 4.41
48 49 1.746322 CTTGTGGCCATGGTTGTGCA 61.746 55.000 9.72 0.00 0.00 4.57
49 50 1.005867 CTTGTGGCCATGGTTGTGC 60.006 57.895 9.72 0.00 0.00 4.57
50 51 0.314935 GTCTTGTGGCCATGGTTGTG 59.685 55.000 9.72 0.00 0.00 3.33
51 52 0.827507 GGTCTTGTGGCCATGGTTGT 60.828 55.000 9.72 0.00 0.00 3.32
52 53 0.827089 TGGTCTTGTGGCCATGGTTG 60.827 55.000 9.72 0.00 0.00 3.77
53 54 0.827507 GTGGTCTTGTGGCCATGGTT 60.828 55.000 9.72 0.00 37.09 3.67
54 55 1.228552 GTGGTCTTGTGGCCATGGT 60.229 57.895 9.72 0.00 37.09 3.55
55 56 1.228521 TGTGGTCTTGTGGCCATGG 60.229 57.895 9.72 7.63 37.09 3.66
56 57 1.526575 GGTGTGGTCTTGTGGCCATG 61.527 60.000 9.72 2.38 37.09 3.66
57 58 1.228552 GGTGTGGTCTTGTGGCCAT 60.229 57.895 9.72 0.00 37.09 4.40
58 59 2.194597 GGTGTGGTCTTGTGGCCA 59.805 61.111 0.00 0.00 0.00 5.36
59 60 1.898574 CAGGTGTGGTCTTGTGGCC 60.899 63.158 0.00 0.00 0.00 5.36
60 61 0.886490 CTCAGGTGTGGTCTTGTGGC 60.886 60.000 0.00 0.00 0.00 5.01
61 62 0.758734 TCTCAGGTGTGGTCTTGTGG 59.241 55.000 0.00 0.00 0.00 4.17
62 63 1.869754 CGTCTCAGGTGTGGTCTTGTG 60.870 57.143 0.00 0.00 0.00 3.33
63 64 0.389391 CGTCTCAGGTGTGGTCTTGT 59.611 55.000 0.00 0.00 0.00 3.16
64 65 0.389391 ACGTCTCAGGTGTGGTCTTG 59.611 55.000 0.00 0.00 0.00 3.02
65 66 0.389391 CACGTCTCAGGTGTGGTCTT 59.611 55.000 0.00 0.00 0.00 3.01
66 67 0.467474 TCACGTCTCAGGTGTGGTCT 60.467 55.000 0.00 0.00 35.64 3.85
67 68 0.039074 CTCACGTCTCAGGTGTGGTC 60.039 60.000 0.00 0.00 35.64 4.02
68 69 2.041976 CTCACGTCTCAGGTGTGGT 58.958 57.895 0.00 0.00 35.64 4.16
69 70 1.373497 GCTCACGTCTCAGGTGTGG 60.373 63.158 0.00 0.00 35.64 4.17
70 71 0.387878 GAGCTCACGTCTCAGGTGTG 60.388 60.000 9.40 0.00 35.64 3.82
71 72 1.528292 GGAGCTCACGTCTCAGGTGT 61.528 60.000 17.19 0.00 35.64 4.16
72 73 1.214062 GGAGCTCACGTCTCAGGTG 59.786 63.158 17.19 0.00 35.48 4.00
73 74 2.336478 CGGAGCTCACGTCTCAGGT 61.336 63.158 17.19 0.00 32.38 4.00
74 75 2.487428 CGGAGCTCACGTCTCAGG 59.513 66.667 17.19 0.00 32.38 3.86
100 101 1.663379 TAGTGGTGGGAGCGATGACG 61.663 60.000 0.00 0.00 42.93 4.35
101 102 0.103208 CTAGTGGTGGGAGCGATGAC 59.897 60.000 0.00 0.00 0.00 3.06
102 103 1.043116 CCTAGTGGTGGGAGCGATGA 61.043 60.000 0.00 0.00 0.00 2.92
103 104 1.443407 CCTAGTGGTGGGAGCGATG 59.557 63.158 0.00 0.00 0.00 3.84
104 105 3.956377 CCTAGTGGTGGGAGCGAT 58.044 61.111 0.00 0.00 0.00 4.58
112 113 4.778143 GTGGCGGCCCTAGTGGTG 62.778 72.222 17.97 0.00 36.04 4.17
130 131 4.195334 ATGGTCTGGGATGCCGGC 62.195 66.667 22.73 22.73 0.00 6.13
131 132 2.203252 CATGGTCTGGGATGCCGG 60.203 66.667 5.55 5.55 0.00 6.13
132 133 0.680921 AAACATGGTCTGGGATGCCG 60.681 55.000 0.00 0.00 0.00 5.69
133 134 1.106285 GAAACATGGTCTGGGATGCC 58.894 55.000 0.00 0.00 0.00 4.40
134 135 1.106285 GGAAACATGGTCTGGGATGC 58.894 55.000 0.00 0.00 0.00 3.91
135 136 2.648059 GAGGAAACATGGTCTGGGATG 58.352 52.381 0.00 0.00 0.00 3.51
136 137 1.566231 GGAGGAAACATGGTCTGGGAT 59.434 52.381 0.00 0.00 0.00 3.85
137 138 0.991920 GGAGGAAACATGGTCTGGGA 59.008 55.000 0.00 0.00 0.00 4.37
138 139 0.392998 CGGAGGAAACATGGTCTGGG 60.393 60.000 0.00 0.00 0.00 4.45
139 140 1.026718 GCGGAGGAAACATGGTCTGG 61.027 60.000 0.00 0.00 0.00 3.86
140 141 1.026718 GGCGGAGGAAACATGGTCTG 61.027 60.000 0.00 0.00 0.00 3.51
141 142 1.299976 GGCGGAGGAAACATGGTCT 59.700 57.895 0.00 0.00 0.00 3.85
142 143 2.106683 CGGCGGAGGAAACATGGTC 61.107 63.158 0.00 0.00 0.00 4.02
143 144 2.046314 CGGCGGAGGAAACATGGT 60.046 61.111 0.00 0.00 0.00 3.55
144 145 3.508840 GCGGCGGAGGAAACATGG 61.509 66.667 9.78 0.00 0.00 3.66
145 146 3.508840 GGCGGCGGAGGAAACATG 61.509 66.667 9.78 0.00 0.00 3.21
146 147 4.028490 TGGCGGCGGAGGAAACAT 62.028 61.111 9.78 0.00 0.00 2.71
157 158 3.988525 TTTGTGCATGGTGGCGGC 61.989 61.111 0.00 0.00 36.28 6.53
158 159 2.049248 GTTTGTGCATGGTGGCGG 60.049 61.111 0.00 0.00 36.28 6.13
159 160 1.661197 GTGTTTGTGCATGGTGGCG 60.661 57.895 0.00 0.00 36.28 5.69
160 161 1.300853 GGTGTTTGTGCATGGTGGC 60.301 57.895 0.00 0.00 0.00 5.01
161 162 0.314935 GAGGTGTTTGTGCATGGTGG 59.685 55.000 0.00 0.00 0.00 4.61
162 163 0.314935 GGAGGTGTTTGTGCATGGTG 59.685 55.000 0.00 0.00 0.00 4.17
163 164 0.185901 AGGAGGTGTTTGTGCATGGT 59.814 50.000 0.00 0.00 0.00 3.55
164 165 1.812571 GTAGGAGGTGTTTGTGCATGG 59.187 52.381 0.00 0.00 0.00 3.66
165 166 1.812571 GGTAGGAGGTGTTTGTGCATG 59.187 52.381 0.00 0.00 0.00 4.06
166 167 1.610624 CGGTAGGAGGTGTTTGTGCAT 60.611 52.381 0.00 0.00 0.00 3.96
167 168 0.250124 CGGTAGGAGGTGTTTGTGCA 60.250 55.000 0.00 0.00 0.00 4.57
168 169 0.953960 CCGGTAGGAGGTGTTTGTGC 60.954 60.000 0.00 0.00 41.02 4.57
169 170 0.395312 ACCGGTAGGAGGTGTTTGTG 59.605 55.000 4.49 0.00 41.10 3.33
170 171 2.844394 ACCGGTAGGAGGTGTTTGT 58.156 52.632 4.49 0.00 41.10 2.83
176 177 1.305887 CCCTTCACCGGTAGGAGGT 60.306 63.158 22.86 0.00 43.97 3.85
177 178 2.064581 CCCCTTCACCGGTAGGAGG 61.065 68.421 22.86 20.90 41.02 4.30
178 179 0.032813 TACCCCTTCACCGGTAGGAG 60.033 60.000 22.86 13.63 41.02 3.69
179 180 0.032813 CTACCCCTTCACCGGTAGGA 60.033 60.000 22.86 7.78 45.36 2.94
180 181 2.512973 CTACCCCTTCACCGGTAGG 58.487 63.158 15.56 15.56 45.36 3.18
182 183 1.620524 CCTTCTACCCCTTCACCGGTA 60.621 57.143 6.87 0.00 33.36 4.02
183 184 0.908180 CCTTCTACCCCTTCACCGGT 60.908 60.000 0.00 0.00 36.08 5.28
184 185 1.905512 CCTTCTACCCCTTCACCGG 59.094 63.158 0.00 0.00 0.00 5.28
185 186 1.221021 GCCTTCTACCCCTTCACCG 59.779 63.158 0.00 0.00 0.00 4.94
186 187 0.542333 GAGCCTTCTACCCCTTCACC 59.458 60.000 0.00 0.00 0.00 4.02
187 188 0.542333 GGAGCCTTCTACCCCTTCAC 59.458 60.000 0.00 0.00 0.00 3.18
188 189 0.417841 AGGAGCCTTCTACCCCTTCA 59.582 55.000 0.00 0.00 0.00 3.02
189 190 1.124780 GAGGAGCCTTCTACCCCTTC 58.875 60.000 0.00 0.00 0.00 3.46
190 191 0.326713 GGAGGAGCCTTCTACCCCTT 60.327 60.000 0.00 0.00 0.00 3.95
191 192 1.315216 GGAGGAGCCTTCTACCCCT 59.685 63.158 0.00 0.00 0.00 4.79
192 193 3.973458 GGAGGAGCCTTCTACCCC 58.027 66.667 0.00 0.00 0.00 4.95
201 202 2.941860 GCTTTGGTTAGAAGGAGGAGCC 60.942 54.545 0.00 0.00 0.00 4.70
202 203 2.290323 TGCTTTGGTTAGAAGGAGGAGC 60.290 50.000 0.00 0.00 0.00 4.70
203 204 3.703001 TGCTTTGGTTAGAAGGAGGAG 57.297 47.619 0.00 0.00 0.00 3.69
204 205 3.810743 GCTTGCTTTGGTTAGAAGGAGGA 60.811 47.826 0.00 0.00 0.00 3.71
205 206 2.489722 GCTTGCTTTGGTTAGAAGGAGG 59.510 50.000 0.00 0.00 0.00 4.30
206 207 2.489722 GGCTTGCTTTGGTTAGAAGGAG 59.510 50.000 0.00 0.00 0.00 3.69
207 208 2.514803 GGCTTGCTTTGGTTAGAAGGA 58.485 47.619 0.00 0.00 0.00 3.36
208 209 1.546029 GGGCTTGCTTTGGTTAGAAGG 59.454 52.381 0.00 0.00 0.00 3.46
209 210 1.546029 GGGGCTTGCTTTGGTTAGAAG 59.454 52.381 0.00 0.00 0.00 2.85
210 211 1.146982 AGGGGCTTGCTTTGGTTAGAA 59.853 47.619 0.00 0.00 0.00 2.10
211 212 0.777446 AGGGGCTTGCTTTGGTTAGA 59.223 50.000 0.00 0.00 0.00 2.10
212 213 1.273327 CAAGGGGCTTGCTTTGGTTAG 59.727 52.381 0.00 0.00 34.63 2.34
213 214 1.337118 CAAGGGGCTTGCTTTGGTTA 58.663 50.000 0.00 0.00 34.63 2.85
214 215 1.410050 CCAAGGGGCTTGCTTTGGTT 61.410 55.000 12.37 0.00 39.85 3.67
215 216 1.838396 CCAAGGGGCTTGCTTTGGT 60.838 57.895 12.37 0.00 39.85 3.67
216 217 1.838396 ACCAAGGGGCTTGCTTTGG 60.838 57.895 16.27 16.27 44.38 3.28
217 218 1.368579 CACCAAGGGGCTTGCTTTG 59.631 57.895 0.00 0.00 39.85 2.77
218 219 1.838396 CCACCAAGGGGCTTGCTTT 60.838 57.895 0.00 0.00 39.85 3.51
219 220 2.203684 CCACCAAGGGGCTTGCTT 60.204 61.111 0.00 0.00 39.85 3.91
228 229 3.023832 GTTGACAATATCCCCACCAAGG 58.976 50.000 0.00 0.00 37.03 3.61
229 230 3.023832 GGTTGACAATATCCCCACCAAG 58.976 50.000 0.00 0.00 0.00 3.61
230 231 2.619332 CGGTTGACAATATCCCCACCAA 60.619 50.000 0.00 0.00 0.00 3.67
231 232 1.065053 CGGTTGACAATATCCCCACCA 60.065 52.381 0.00 0.00 0.00 4.17
232 233 1.675552 CGGTTGACAATATCCCCACC 58.324 55.000 0.00 0.00 0.00 4.61
233 234 1.675552 CCGGTTGACAATATCCCCAC 58.324 55.000 0.00 0.00 0.00 4.61
234 235 0.548989 CCCGGTTGACAATATCCCCA 59.451 55.000 0.00 0.00 0.00 4.96
235 236 0.549469 ACCCGGTTGACAATATCCCC 59.451 55.000 0.00 0.00 0.00 4.81
236 237 1.210967 TGACCCGGTTGACAATATCCC 59.789 52.381 0.00 0.00 0.00 3.85
237 238 2.702592 TGACCCGGTTGACAATATCC 57.297 50.000 0.00 0.00 0.00 2.59
238 239 5.576447 AATTTGACCCGGTTGACAATATC 57.424 39.130 0.00 0.00 0.00 1.63
239 240 5.478679 TCAAATTTGACCCGGTTGACAATAT 59.521 36.000 16.91 0.00 31.01 1.28
240 241 4.827835 TCAAATTTGACCCGGTTGACAATA 59.172 37.500 16.91 0.00 31.01 1.90
241 242 3.639094 TCAAATTTGACCCGGTTGACAAT 59.361 39.130 16.91 0.00 31.01 2.71
242 243 3.024547 TCAAATTTGACCCGGTTGACAA 58.975 40.909 16.91 0.00 31.01 3.18
243 244 2.621055 CTCAAATTTGACCCGGTTGACA 59.379 45.455 16.91 0.00 32.90 3.58
244 245 2.607038 GCTCAAATTTGACCCGGTTGAC 60.607 50.000 16.91 0.00 32.90 3.18
245 246 1.611491 GCTCAAATTTGACCCGGTTGA 59.389 47.619 16.91 0.49 32.90 3.18
246 247 1.339610 TGCTCAAATTTGACCCGGTTG 59.660 47.619 16.91 6.85 32.90 3.77
247 248 1.339929 GTGCTCAAATTTGACCCGGTT 59.660 47.619 16.91 0.00 32.90 4.44
248 249 0.958822 GTGCTCAAATTTGACCCGGT 59.041 50.000 16.91 0.00 32.90 5.28
249 250 0.109781 CGTGCTCAAATTTGACCCGG 60.110 55.000 16.91 8.60 32.90 5.73
250 251 0.109781 CCGTGCTCAAATTTGACCCG 60.110 55.000 16.91 16.72 32.90 5.28
251 252 0.243636 CCCGTGCTCAAATTTGACCC 59.756 55.000 16.91 11.17 32.90 4.46
252 253 1.243902 TCCCGTGCTCAAATTTGACC 58.756 50.000 16.91 11.38 32.90 4.02
253 254 3.004315 TCTTTCCCGTGCTCAAATTTGAC 59.996 43.478 16.91 13.69 32.90 3.18
254 255 3.218453 TCTTTCCCGTGCTCAAATTTGA 58.782 40.909 19.45 19.45 35.57 2.69
255 256 3.641437 TCTTTCCCGTGCTCAAATTTG 57.359 42.857 12.15 12.15 0.00 2.32
256 257 3.005791 CCTTCTTTCCCGTGCTCAAATTT 59.994 43.478 0.00 0.00 0.00 1.82
257 258 2.558359 CCTTCTTTCCCGTGCTCAAATT 59.442 45.455 0.00 0.00 0.00 1.82
258 259 2.162681 CCTTCTTTCCCGTGCTCAAAT 58.837 47.619 0.00 0.00 0.00 2.32
259 260 1.604604 CCTTCTTTCCCGTGCTCAAA 58.395 50.000 0.00 0.00 0.00 2.69
260 261 0.889186 GCCTTCTTTCCCGTGCTCAA 60.889 55.000 0.00 0.00 0.00 3.02
261 262 1.302511 GCCTTCTTTCCCGTGCTCA 60.303 57.895 0.00 0.00 0.00 4.26
262 263 2.391389 CGCCTTCTTTCCCGTGCTC 61.391 63.158 0.00 0.00 0.00 4.26
263 264 2.358737 CGCCTTCTTTCCCGTGCT 60.359 61.111 0.00 0.00 0.00 4.40
264 265 3.431725 CCGCCTTCTTTCCCGTGC 61.432 66.667 0.00 0.00 0.00 5.34
265 266 2.032071 ACCGCCTTCTTTCCCGTG 59.968 61.111 0.00 0.00 0.00 4.94
266 267 2.032071 CACCGCCTTCTTTCCCGT 59.968 61.111 0.00 0.00 0.00 5.28
267 268 2.746277 CCACCGCCTTCTTTCCCG 60.746 66.667 0.00 0.00 0.00 5.14
268 269 1.674651 GACCACCGCCTTCTTTCCC 60.675 63.158 0.00 0.00 0.00 3.97
269 270 2.033194 CGACCACCGCCTTCTTTCC 61.033 63.158 0.00 0.00 0.00 3.13
270 271 3.562635 CGACCACCGCCTTCTTTC 58.437 61.111 0.00 0.00 0.00 2.62
300 301 3.659089 ATTTCGTCTCGGGTGGCCG 62.659 63.158 0.00 0.00 0.00 6.13
301 302 2.106683 CATTTCGTCTCGGGTGGCC 61.107 63.158 0.00 0.00 0.00 5.36
302 303 2.750888 GCATTTCGTCTCGGGTGGC 61.751 63.158 0.00 0.00 0.00 5.01
303 304 0.744414 ATGCATTTCGTCTCGGGTGG 60.744 55.000 0.00 0.00 0.00 4.61
304 305 1.086696 AATGCATTTCGTCTCGGGTG 58.913 50.000 5.99 0.00 0.00 4.61
305 306 1.821216 AAATGCATTTCGTCTCGGGT 58.179 45.000 18.99 0.00 0.00 5.28
306 307 2.161410 TCAAAATGCATTTCGTCTCGGG 59.839 45.455 24.28 7.65 0.00 5.14
307 308 3.419915 CTCAAAATGCATTTCGTCTCGG 58.580 45.455 24.28 8.87 0.00 4.63
308 309 2.842485 GCTCAAAATGCATTTCGTCTCG 59.158 45.455 24.28 11.12 0.00 4.04
309 310 2.842485 CGCTCAAAATGCATTTCGTCTC 59.158 45.455 24.28 11.87 0.00 3.36
310 311 2.483877 TCGCTCAAAATGCATTTCGTCT 59.516 40.909 24.28 6.70 0.00 4.18
311 312 2.589841 GTCGCTCAAAATGCATTTCGTC 59.410 45.455 24.28 16.31 0.00 4.20
312 313 2.031245 TGTCGCTCAAAATGCATTTCGT 60.031 40.909 24.28 7.83 0.00 3.85
313 314 2.583739 TGTCGCTCAAAATGCATTTCG 58.416 42.857 24.28 21.48 0.00 3.46
314 315 5.972973 TGATATGTCGCTCAAAATGCATTTC 59.027 36.000 24.28 11.29 0.00 2.17
315 316 5.893687 TGATATGTCGCTCAAAATGCATTT 58.106 33.333 18.99 18.99 0.00 2.32
316 317 5.297527 TCTGATATGTCGCTCAAAATGCATT 59.702 36.000 5.99 5.99 0.00 3.56
317 318 4.818005 TCTGATATGTCGCTCAAAATGCAT 59.182 37.500 0.00 0.00 0.00 3.96
318 319 4.190772 TCTGATATGTCGCTCAAAATGCA 58.809 39.130 0.00 0.00 0.00 3.96
319 320 4.509230 TCTCTGATATGTCGCTCAAAATGC 59.491 41.667 0.00 0.00 0.00 3.56
320 321 5.332130 CGTCTCTGATATGTCGCTCAAAATG 60.332 44.000 0.00 0.00 0.00 2.32
321 322 4.742167 CGTCTCTGATATGTCGCTCAAAAT 59.258 41.667 0.00 0.00 0.00 1.82
322 323 4.105486 CGTCTCTGATATGTCGCTCAAAA 58.895 43.478 0.00 0.00 0.00 2.44
323 324 3.128764 ACGTCTCTGATATGTCGCTCAAA 59.871 43.478 0.00 0.00 0.00 2.69
324 325 2.683362 ACGTCTCTGATATGTCGCTCAA 59.317 45.455 0.00 0.00 0.00 3.02
325 326 2.288186 GACGTCTCTGATATGTCGCTCA 59.712 50.000 8.70 0.00 0.00 4.26
326 327 2.288186 TGACGTCTCTGATATGTCGCTC 59.712 50.000 17.92 0.00 32.32 5.03
327 328 2.289565 TGACGTCTCTGATATGTCGCT 58.710 47.619 17.92 0.00 32.32 4.93
328 329 2.757686 TGACGTCTCTGATATGTCGC 57.242 50.000 17.92 0.00 32.32 5.19
329 330 3.181500 TGGTTGACGTCTCTGATATGTCG 60.181 47.826 17.92 0.00 32.32 4.35
330 331 4.106197 GTGGTTGACGTCTCTGATATGTC 58.894 47.826 17.92 8.09 0.00 3.06
331 332 3.764434 AGTGGTTGACGTCTCTGATATGT 59.236 43.478 17.92 0.00 0.00 2.29
332 333 4.097135 AGAGTGGTTGACGTCTCTGATATG 59.903 45.833 17.92 0.00 36.17 1.78
333 334 4.274147 AGAGTGGTTGACGTCTCTGATAT 58.726 43.478 17.92 0.00 36.17 1.63
334 335 3.687125 AGAGTGGTTGACGTCTCTGATA 58.313 45.455 17.92 0.00 36.17 2.15
335 336 2.520069 AGAGTGGTTGACGTCTCTGAT 58.480 47.619 17.92 0.00 36.17 2.90
336 337 1.982660 AGAGTGGTTGACGTCTCTGA 58.017 50.000 17.92 0.00 36.17 3.27
337 338 2.057503 CAGAGTGGTTGACGTCTCTG 57.942 55.000 17.92 15.46 44.64 3.35
338 339 0.315568 GCAGAGTGGTTGACGTCTCT 59.684 55.000 17.92 7.03 37.70 3.10
339 340 0.667792 GGCAGAGTGGTTGACGTCTC 60.668 60.000 17.92 9.74 0.00 3.36
340 341 1.367840 GGCAGAGTGGTTGACGTCT 59.632 57.895 17.92 0.00 0.00 4.18
341 342 0.531974 TTGGCAGAGTGGTTGACGTC 60.532 55.000 9.11 9.11 0.00 4.34
342 343 0.108585 ATTGGCAGAGTGGTTGACGT 59.891 50.000 0.00 0.00 0.00 4.34
343 344 0.798776 GATTGGCAGAGTGGTTGACG 59.201 55.000 0.00 0.00 0.00 4.35
344 345 1.537202 GTGATTGGCAGAGTGGTTGAC 59.463 52.381 0.00 0.00 0.00 3.18
345 346 1.142667 TGTGATTGGCAGAGTGGTTGA 59.857 47.619 0.00 0.00 0.00 3.18
346 347 1.608055 TGTGATTGGCAGAGTGGTTG 58.392 50.000 0.00 0.00 0.00 3.77
347 348 2.592102 ATGTGATTGGCAGAGTGGTT 57.408 45.000 0.00 0.00 0.00 3.67
348 349 3.200605 TCATATGTGATTGGCAGAGTGGT 59.799 43.478 1.90 0.00 0.00 4.16
349 350 3.812262 TCATATGTGATTGGCAGAGTGG 58.188 45.455 1.90 0.00 0.00 4.00
350 351 5.575957 GTTTCATATGTGATTGGCAGAGTG 58.424 41.667 1.90 0.00 33.56 3.51
351 352 4.333649 CGTTTCATATGTGATTGGCAGAGT 59.666 41.667 1.90 0.00 33.56 3.24
352 353 4.260907 CCGTTTCATATGTGATTGGCAGAG 60.261 45.833 1.90 0.00 33.56 3.35
353 354 3.627123 CCGTTTCATATGTGATTGGCAGA 59.373 43.478 1.90 0.00 33.56 4.26
354 355 3.627123 TCCGTTTCATATGTGATTGGCAG 59.373 43.478 1.90 0.00 33.56 4.85
355 356 3.376859 GTCCGTTTCATATGTGATTGGCA 59.623 43.478 1.90 0.00 33.56 4.92
356 357 3.376859 TGTCCGTTTCATATGTGATTGGC 59.623 43.478 1.90 0.00 33.56 4.52
357 358 5.559427 TTGTCCGTTTCATATGTGATTGG 57.441 39.130 1.90 0.52 33.56 3.16
358 359 7.380870 TGTTTTTGTCCGTTTCATATGTGATTG 59.619 33.333 1.90 0.00 33.56 2.67
359 360 7.429633 TGTTTTTGTCCGTTTCATATGTGATT 58.570 30.769 1.90 0.00 33.56 2.57
360 361 6.976088 TGTTTTTGTCCGTTTCATATGTGAT 58.024 32.000 1.90 0.00 33.56 3.06
361 362 6.378710 TGTTTTTGTCCGTTTCATATGTGA 57.621 33.333 1.90 0.00 0.00 3.58
362 363 8.735303 TTATGTTTTTGTCCGTTTCATATGTG 57.265 30.769 1.90 0.00 0.00 3.21
363 364 8.026607 CCTTATGTTTTTGTCCGTTTCATATGT 58.973 33.333 1.90 0.00 0.00 2.29
364 365 8.240682 TCCTTATGTTTTTGTCCGTTTCATATG 58.759 33.333 0.00 0.00 0.00 1.78
365 366 8.343168 TCCTTATGTTTTTGTCCGTTTCATAT 57.657 30.769 0.00 0.00 0.00 1.78
366 367 7.747155 TCCTTATGTTTTTGTCCGTTTCATA 57.253 32.000 0.00 0.00 0.00 2.15
367 368 6.642707 TCCTTATGTTTTTGTCCGTTTCAT 57.357 33.333 0.00 0.00 0.00 2.57
368 369 6.452494 TTCCTTATGTTTTTGTCCGTTTCA 57.548 33.333 0.00 0.00 0.00 2.69
369 370 6.075257 CGTTTCCTTATGTTTTTGTCCGTTTC 60.075 38.462 0.00 0.00 0.00 2.78
370 371 5.744819 CGTTTCCTTATGTTTTTGTCCGTTT 59.255 36.000 0.00 0.00 0.00 3.60
371 372 5.066246 TCGTTTCCTTATGTTTTTGTCCGTT 59.934 36.000 0.00 0.00 0.00 4.44
372 373 4.575645 TCGTTTCCTTATGTTTTTGTCCGT 59.424 37.500 0.00 0.00 0.00 4.69
373 374 4.907582 GTCGTTTCCTTATGTTTTTGTCCG 59.092 41.667 0.00 0.00 0.00 4.79
374 375 5.823353 TGTCGTTTCCTTATGTTTTTGTCC 58.177 37.500 0.00 0.00 0.00 4.02
375 376 7.924103 AATGTCGTTTCCTTATGTTTTTGTC 57.076 32.000 0.00 0.00 0.00 3.18
376 377 9.804758 TTTAATGTCGTTTCCTTATGTTTTTGT 57.195 25.926 0.00 0.00 0.00 2.83
402 403 6.503524 TGCTAGCTTTTTCGTCTGAATTTTT 58.496 32.000 17.23 0.00 33.20 1.94
403 404 6.072112 TGCTAGCTTTTTCGTCTGAATTTT 57.928 33.333 17.23 0.00 33.20 1.82
404 405 5.689383 TGCTAGCTTTTTCGTCTGAATTT 57.311 34.783 17.23 0.00 33.20 1.82
405 406 5.392380 CCATGCTAGCTTTTTCGTCTGAATT 60.392 40.000 17.23 0.00 33.20 2.17
406 407 4.095483 CCATGCTAGCTTTTTCGTCTGAAT 59.905 41.667 17.23 0.00 33.20 2.57
407 408 3.436704 CCATGCTAGCTTTTTCGTCTGAA 59.563 43.478 17.23 0.00 0.00 3.02
408 409 3.002791 CCATGCTAGCTTTTTCGTCTGA 58.997 45.455 17.23 0.00 0.00 3.27
409 410 3.002791 TCCATGCTAGCTTTTTCGTCTG 58.997 45.455 17.23 0.00 0.00 3.51
410 411 3.334583 TCCATGCTAGCTTTTTCGTCT 57.665 42.857 17.23 0.00 0.00 4.18
411 412 4.154195 TCTTTCCATGCTAGCTTTTTCGTC 59.846 41.667 17.23 0.00 0.00 4.20
412 413 4.072131 TCTTTCCATGCTAGCTTTTTCGT 58.928 39.130 17.23 0.00 0.00 3.85
413 414 4.393062 TCTCTTTCCATGCTAGCTTTTTCG 59.607 41.667 17.23 0.00 0.00 3.46
414 415 5.886960 TCTCTTTCCATGCTAGCTTTTTC 57.113 39.130 17.23 0.00 0.00 2.29
415 416 5.948162 TGATCTCTTTCCATGCTAGCTTTTT 59.052 36.000 17.23 0.00 0.00 1.94
416 417 5.356470 GTGATCTCTTTCCATGCTAGCTTTT 59.644 40.000 17.23 0.00 0.00 2.27
417 418 4.880696 GTGATCTCTTTCCATGCTAGCTTT 59.119 41.667 17.23 0.00 0.00 3.51
418 419 4.450053 GTGATCTCTTTCCATGCTAGCTT 58.550 43.478 17.23 6.81 0.00 3.74
419 420 3.492309 CGTGATCTCTTTCCATGCTAGCT 60.492 47.826 17.23 0.00 0.00 3.32
420 421 2.799412 CGTGATCTCTTTCCATGCTAGC 59.201 50.000 8.10 8.10 0.00 3.42
421 422 4.052159 ACGTGATCTCTTTCCATGCTAG 57.948 45.455 0.00 0.00 0.00 3.42
422 423 4.645136 AGTACGTGATCTCTTTCCATGCTA 59.355 41.667 0.00 0.00 0.00 3.49
423 424 3.449018 AGTACGTGATCTCTTTCCATGCT 59.551 43.478 0.00 0.00 0.00 3.79
424 425 3.786635 AGTACGTGATCTCTTTCCATGC 58.213 45.455 0.00 0.00 0.00 4.06
425 426 6.330278 TGTTAGTACGTGATCTCTTTCCATG 58.670 40.000 0.00 0.00 0.00 3.66
426 427 6.525578 TGTTAGTACGTGATCTCTTTCCAT 57.474 37.500 0.00 0.00 0.00 3.41
427 428 5.970317 TGTTAGTACGTGATCTCTTTCCA 57.030 39.130 0.00 0.00 0.00 3.53
428 429 7.829378 ATTTGTTAGTACGTGATCTCTTTCC 57.171 36.000 0.00 0.00 0.00 3.13
432 433 9.701098 TGTTTTATTTGTTAGTACGTGATCTCT 57.299 29.630 0.00 0.00 0.00 3.10
435 436 9.405083 CGATGTTTTATTTGTTAGTACGTGATC 57.595 33.333 0.00 0.00 0.00 2.92
436 437 8.385111 CCGATGTTTTATTTGTTAGTACGTGAT 58.615 33.333 0.00 0.00 0.00 3.06
437 438 7.598118 TCCGATGTTTTATTTGTTAGTACGTGA 59.402 33.333 0.00 0.00 0.00 4.35
438 439 7.731720 TCCGATGTTTTATTTGTTAGTACGTG 58.268 34.615 0.00 0.00 0.00 4.49
439 440 7.887996 TCCGATGTTTTATTTGTTAGTACGT 57.112 32.000 0.00 0.00 0.00 3.57
440 441 9.417284 GATTCCGATGTTTTATTTGTTAGTACG 57.583 33.333 0.00 0.00 0.00 3.67
441 442 9.417284 CGATTCCGATGTTTTATTTGTTAGTAC 57.583 33.333 0.00 0.00 38.22 2.73
442 443 9.368674 TCGATTCCGATGTTTTATTTGTTAGTA 57.631 29.630 0.00 0.00 40.30 1.82
443 444 8.259049 TCGATTCCGATGTTTTATTTGTTAGT 57.741 30.769 0.00 0.00 40.30 2.24
459 460 0.939419 TCGAGCGTTATCGATTCCGA 59.061 50.000 17.35 9.11 46.20 4.55
475 476 2.070783 GCCAAAATCTACCACGTTCGA 58.929 47.619 0.00 0.00 0.00 3.71
519 520 3.380479 TGTGCTAAGGTATCGTATGGC 57.620 47.619 0.00 0.00 0.00 4.40
572 574 2.295253 ACAGCCCGAACGATCTAAAG 57.705 50.000 0.00 0.00 0.00 1.85
601 603 4.353437 GAGCGTGGTCGTTCGGGT 62.353 66.667 0.00 0.00 37.52 5.28
620 622 2.035321 GAGGATAAGGGAGAGAAGTGCG 59.965 54.545 0.00 0.00 0.00 5.34
829 831 2.278857 CGCTTCATCGTCCTCGGG 60.279 66.667 0.00 0.00 37.69 5.14
999 1001 2.646719 CAACCACGCAGCTGCATT 59.353 55.556 36.03 21.01 42.21 3.56
1104 1106 1.801332 CGTCGGACGAAGAGACCAT 59.199 57.895 25.29 0.00 46.05 3.55
1120 1122 1.094785 CAAATCCGGCCTTGATTCGT 58.905 50.000 15.36 1.70 31.39 3.85
1127 1129 0.255033 GACCCTACAAATCCGGCCTT 59.745 55.000 0.00 0.00 0.00 4.35
1129 1131 1.153025 GGACCCTACAAATCCGGCC 60.153 63.158 0.00 0.00 0.00 6.13
1241 1243 0.744414 CGAACCCCATCGTGATTGCT 60.744 55.000 0.00 0.00 38.01 3.91
1301 1303 0.246635 CGTTGACAAGGGGAGTCGAT 59.753 55.000 0.00 0.00 38.83 3.59
1313 1315 3.150458 TCTAGGAAGGAGACGTTGACA 57.850 47.619 0.00 0.00 0.00 3.58
1373 1376 8.538701 TGATTTATGCAGGTTTCCATGTAATTT 58.461 29.630 0.00 0.00 0.00 1.82
1374 1377 8.076910 TGATTTATGCAGGTTTCCATGTAATT 57.923 30.769 0.00 0.00 0.00 1.40
1375 1378 7.658525 TGATTTATGCAGGTTTCCATGTAAT 57.341 32.000 0.00 0.00 0.00 1.89
1406 1409 5.641209 AGCAGCACTCACAATTTAGTCTTAG 59.359 40.000 0.00 0.00 0.00 2.18
1426 1429 3.259374 TCCTCTTCTGTCCAGTAAAGCAG 59.741 47.826 0.00 0.00 0.00 4.24
1702 1707 6.156429 AGGGGGACTAAACTAACTTCAGTATG 59.844 42.308 0.00 0.00 37.54 2.39
1703 1708 6.269974 AGGGGGACTAAACTAACTTCAGTAT 58.730 40.000 0.00 0.00 0.00 2.12
1708 1713 5.494390 TTGAGGGGGACTAAACTAACTTC 57.506 43.478 0.00 0.00 0.00 3.01
1709 1714 5.917545 TTTGAGGGGGACTAAACTAACTT 57.082 39.130 0.00 0.00 0.00 2.66
1710 1715 5.917545 TTTTGAGGGGGACTAAACTAACT 57.082 39.130 0.00 0.00 0.00 2.24
1733 1738 9.239551 ACACCAAACTAAACTAACTTCTTCTTT 57.760 29.630 0.00 0.00 0.00 2.52
1734 1739 8.674607 CACACCAAACTAAACTAACTTCTTCTT 58.325 33.333 0.00 0.00 0.00 2.52
1735 1740 7.827729 ACACACCAAACTAAACTAACTTCTTCT 59.172 33.333 0.00 0.00 0.00 2.85
1736 1741 7.982224 ACACACCAAACTAAACTAACTTCTTC 58.018 34.615 0.00 0.00 0.00 2.87
1737 1742 7.933215 ACACACCAAACTAAACTAACTTCTT 57.067 32.000 0.00 0.00 0.00 2.52
1738 1743 7.496920 GGTACACACCAAACTAAACTAACTTCT 59.503 37.037 0.00 0.00 45.04 2.85
1956 1968 9.440773 GCCATCTTCCAAGAAAATTTAAGAAAT 57.559 29.630 3.59 0.00 38.77 2.17
1971 1983 9.639563 TTGATAAGTATATTTGCCATCTTCCAA 57.360 29.630 0.00 0.00 0.00 3.53
1996 2008 8.816640 ACGAGAACTTAAATTTGCAATGATTT 57.183 26.923 12.46 12.46 0.00 2.17
2012 2024 7.921786 TGAATTTTCCATGATACGAGAACTT 57.078 32.000 0.00 0.00 0.00 2.66
2064 2076 9.710900 AGAACTAAATTTTCCATGATCCAAAAC 57.289 29.630 0.00 0.00 0.00 2.43
2078 2090 5.888161 AGCCATGATCCGAGAACTAAATTTT 59.112 36.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.