>input_sequence_83604
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATGCAGCTGCGTGGTTGCGCCTGGAGTGCGAGGAAGCGG
GCGGGGGCAGCGGCGCTGAGGCCCGCTAGACTCCGGTGGATGTGGCCCTTGGTCGCCGCCGTCCGATGGTCTCTTCGTCC
GACGAATCAAGGCCGGATTTGTAGGGTCCAACGGCGCGGGGTGGCTCTGGTGACCTTGCGCAAGGACGGCGCGCGTGGGG
AAGACAACCACCATGGCCAACCTAGTGGCGTCCCTGGGGCTCAGCAATCACGATGGGGTTCGAACTTTGCGGCCCGTGAC
GAGGCGGCCGTCGGCGCCAGAGATCGACTCCCCTTGTCAACGTCTCCTTCCTA-G-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr5D_1_TraesCS5D01G023600
CAACACGCACTCTCGCCTCCGAGGCCTCCGTACATCGTCTATGCTGCCTGCACAACCATGGCCACAAGACCACACCTGAG
ACGTGAGCTCCGCCCACGAGCGTCATCGCTCCCACCACTAGGGCCGCCACGCCGGCATCCCAGACCATGTTTCCTCCGCC
GCCACCATGCACAAACACCTCCTACCGGTGAAGGGGTAGAAGGCTCCTCCTTCTAACCAAAGCAAGCCCCTTGGTGGGGA
TATTGTCAACCGGGTCAAATTTGAGCACGGGAAAGAAGGCGGTGGTCGCCAGCCAAGCTGCGGCCACCCGAGACGAAATG
CATTTTGAGCGACATATCAGAGACGTCAACCACTCTGCCAATCACATATGAAACGGACAAAAACATAAGGAAACGACATT
AAAAAAATTCAGACGAAAAAGCTAGCATGGAAAGAGATCACGTACTAACAAATAAAACATCGGAATCGATAACGCTCGAA
CGTGGTAGATTTTGGCAAATCGCCCCGAACGCTGCACCTGCCATACGATACCTT-AGCACAAATCACGGAACAAATCCAG
TGTCACGTCATCTCTTTAGATCGTTCGGGCTGTAGCCCCAACACCCGAACGACCACGCTCGCGCACTTCTCTCCCTTATC
CTCTCACTCCACCGCACTAGCCTTTCCCCATTCTCCTATCCACTCCTCTCCTGGCTACTCCTCGGGCCAGCAGCAGCCGT
CGACGGGGAGCGCCGCTCGCCTTGTGGCGCGGCGGAGCAGGCGGCGGAACAGCCGGAGGATGAGGAAGCTGGTGGAGGCG
CGGCGTGACAGCAGCGGTGCGTGGTGGCTCCCCGAGGACGATGAAGCGAGCGGAGGCGGCGACTCCCAGTCCCAGGCCAG
CGCGGATCAGCGGGGCTCCGACGCCGTGGGAGTTCGTCGTGGACGCCGACGGGTCGCCTGAGGATATGGCTCAGACGGAG
GTGGCGCGGCGTGAGCACTCGGCGGCTGGGGCACGGCACGAATGCAGCTGCGTGGTTGCGCCTGGAGTGCGAGGAAGCGG
GCGGGGGCAGCGGCGCTGAGGCCCGCTAGACTCCGGTGGATGTGGCCCTTGGTCGCCGCCGTCCGATGGTCTCTTCGTCC
GACGAATCAAGGCCGGATTTGTAGGGTCCAACGGCGCGGGGTGGCTCTGGTGACCTTGCGCAAGGACGGCGCGCGTGGGG
AAGACAACCACCATGGCCAACCTAGTGGCGTCCCTGGGGCTCAGCAATCACGATGGGGTTCGAACTTTGCGGCCCGTGAC
GAGGCGGCCGTCGGCGCCAGAGATCGACTCCCCTTGTCAACGTCTCCTTCCTA-GAAGGTATGCATATACTGTTGCCTCT
ACTCTGCTAACGCTAAAATTACATGGAAACCTGCATAAATCATGCTTACTAAGACTAAATTGTGAGTGCTGCTTTACTGG
ACAGAAGAGGAGAATATTCTTCAGAGAATTATGGCGTTTCTTTTGGTTTGTAACCATCATCAATAACACATGGGCAACTA
TTCAGTAATCTGTGTACCTTACACTACTTCCTCCTGTTT-GCACTGATGTGTGGATTCCTCAAATTTTGAAGCAGCCTGA
ATGTTACCATCAGATTCTAATTCACTTTGGCATGTCTC-AAATTCTGTTATATTTTTTCCTAGCTGATTTCTGAGTCAAG
TTGTGATAAATTTGTTAACTTAGCTACATACTGAAGTTAGTTTAGTCCCCCTCAAAAAAAGAAGAAGT---TAGT---TT
AGTTTGGTGTGTACCTGAGGTTCTGCTTAAAATAGTTACTATTGTATTAGACATATATTTGACATCTTATTTAGCAAGAT
ATTCCTCGAGAATAGACACAGTTTGCATCTTGTTGTCAACTACAACTCTGACGTACATTTTTTGCCTCCAAAATTGCCAT
GTCTCACTATACATTTT-TTCTTAAATTTGCCCTCTCACTGTAGAACATTTCTTAAATTTTCTTGGAAGATGGCAAATAT
ACTTATCAAATCATTGCAAATTTAAGTTCTCGTATCATGGAAAATTCATTGCTTTCTTGCCATGGCAACTTTTGAGTTTT
GGATCATGGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAATTTAGTTCTCGGATCATGGCTAATT--TTGCTTTCTTGCCATGGCAACTTTT
GATTTTTTTTAAGTTGTCGTTGTAATTCTTTAAATTGTCAAAAACAACACAAAATGGCAAATATTGCCATGGCAAGTTTT
ACTAATTATTTTACCTTTATTAACATGGTGAATTTACCTAAATCCCCATGGTAA-CTTTTTAACTTTTATTGCCATGGCA
AG-TTTACTATTTATTTGCCATGGAAAATTTACCTTTTATTAA
>chr3A_461
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CGGAATCGATAACGCCCGAA
CGTGCTAGATTTTGGCAAATCGCCCCGAACGCTGCATCTACCATACGATACCTT-AGCACGAATCACGGAACAAATCCAG
TGTCATGTCATCCTTTTAGATCGTTCGGGCTGTAGCCCCAACGCCCGAACG------CTCGAGCACTTCTCTCCCTTATC
CTCTCACTCCACCGCACTAGCCTTTCCCCATTCTCCTATCCACACCTCTCGTGGCTGCTCCCCGGGCCAGCAGCAGCCGT
CGACGGGGAGCGCAGCTCGCCTTGTGTCGCGGCGGAGCAGGCGGCGGAACAGCCGGAGGATGAGGAAGCTGGTGGAGGCG
CGGTGTGACGGCAGTGGTGCGTGGTGGCTCGCCGAGGACGATGAAGCGAGGGGAGGCGGCGACTCCCAG------GCCAG
CGCAGATCAACGGGGCTCCGACGCCGTGGGAGTTCGTCGTGGACGCCGACGGGGCGCCTGAGGATATGGCTCAGACGGAG
GTGGTGCGGCGCGAGCACTCGGCGGCTGGGGCACGACGCGGATGCAGCTGCGTGGTTGCGCCTGGAGTGCGAGGAAGCGG
GCGGGGGCAGCGGCGCTGAGGCCCGCTAGACTCCGGTGGATGTGGCCCTTGGTCGCCGCCGTCCGCTGGTCTCTTCGTCC
GGCGAATCGACGCCGGATTTGTAGGGTCCAACGGCGCGGGGTGGCTCTGGTGACCTTGCGCAAGGATGGCGCGCATGGGG
AAGACAACCACCATGGCCAACCTAGTAGGTTCCATGGGGCTCGGCAATCACGATGGGGTTCGAACTTCGCGGCCCGTGAC
GAGGCGGTCGTCGGCGCCAGAGGTCGACTCCCCTGGTCAACGTCTCCTTCCTACGAAGGTATGCATATACTGTTGCCTCT
ACTCTGCTAACACTATCCTTACACGGAAACCTGCATAAATCATGCTTATTAAGACTAAATTGTGAGTGTTGCTTTACTGG
ACAGAAGAAGAGGTTATTCTTCAGAGAATTATGGCGTTTCTTTTGGTTTGTAACCATCATCAATAACACATGGGCAACTA
TTCAGTAATCTGTGTACCTTACACTACTTCCTCCTGTTT-GCACTGATATGTGGATTCCTCAAATTTTGAAGCAGCCTGA
ACGTTACCATCAGATTCTAATTCACTTTG-CATGTCTC-AAATTCTGTTGTATTTTTTCCTAGCTGATTTCTGAGTCAAG
TTGTGATAAAGTAGTTAGCTTAGCTATGTACT-------------------------------GAAGT---TAGT---TT
AGTTTGGTGTGTACCCGAGGTTCTGCTTAAAATAGTTACCATTGTATTAGACATATATTTGACATCTTATTTAGCAAGAT
ATTCCTCGAGAATAGACACAGTTTTCATC---TTGTCAACTACAACTCCGACGTACATTTTTTGCCTCCAAAATCGCCAT
GTCTCACTATACATTTT-TTCTTAAATTTGCCCTCTCCCTGTAAAACTTTTCTTAAATTTTCCTGGAAGATGGCAAATAT
ACTTGTCGAATCATTGCAAATTTTAGTTCTCGTATCATGAAAATTCATTA--TTTTTTGCCATGGCAACTTTTGATTTTT
GGATCATGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr4D_462
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GGAATCGATAACGCCCGAA
CGTGCTAGATTTTGGCAAATCGCCCCGAATGCTGCACCTACCATATGATACCTTTAGCACGAATCACAGAACAAATCCAG
TGTCACGTCATCTTTTTAGATCGTTCGGGCTGTAGCCCCAACGCCCGAACG------CTCGAGCACTTCTCTCCCTTATC
CTCTCACTCCACCGCACTAGCCTTTCCCCATTCTCCTATCCACTCCTCTCCTGGCTGCTCCTCGGGCCAGCAGCAACCGT
CGACGGGGAGCGCAGCTCGCCTTGTGTCGCGGCGGAGCAGGCGGCGGAACAGCCGGAGGATGAGGAAGCTGGTGGAGGCG
CGGTGTGACGGCAGCGGTGCGTGGTGGCTCGCCGAGGACGATGAAGCGAGCGGAGGCGGCGACTCCCAG------GCCAG
CGCGGATCAGCGGGGCTCCGACGCCGTG--------------------------------AGGATATGGCTAAGATGGAG
GTGGCGCGGCGCGAGCACTCGGTGGCTGGGGCACGTCGCGGATGCAGCTGCGTGGTTGCGCTTGGAGTGCGAGTAAGCGG
GCGGGGGCAGCGGCGCTGAGGCCCGCTAGACTCCGGTGGATGTGGCCCTTGGTCGCCGCCGTCCGCTGGTCTCTTCGCCC
GGCGAATCGACGCCGGATTTGTAGGGTCCAACGGCGCGGGGTGGCTCTGGTGACCTTGCGCAAGGACGGCACGCGCGGGG
AAGACAACCACCATGGCCAACCTAGTGGCGTCCCTGGGGCTCGGCAATCACGATGGGGTTCGAACTTCGCGGCCCGTGAC
GAGGCGGCTGTCGGCGCCAGAGGTCGACTCCCC-GGTCAACGTCTCCTTCCTACGAAGGTACGCATATACTATTGCCTCT
ACTCTGCTAACGCTATTCTTACACGGAAACCTGCATAAATCATGCTTATTAAGACTAAATTGTGAGTGTTGCTTTACTGG
ACAGAAGAAGAGATTATTCTTCAGAGAATTGTGGCGTTTCTTTTGGTTTGTAACCATCATCAATAACACATGGGCAACTA
TTCAGTAATCTGTGTACCTTACACTACTTCCTCTTGTTT-GTACTGATATGTGGATTCCTCAAATTTTGAAGCAGCCTCA
ACGTTACCATCAGATTCTAATTCACTTTGGCATGTCTC-AAATTCTGTTATATTTTTTCCTAGCTGATTTCTGAGTCAAG
TTGTGATAAATTAGTTAGCTTAGCTATGTACT-------------------------------GAAGT---TAGT---TT
AGTTTGGTGTGTACCCGAGGTTCTGCTTAAAATAGTTACCATTGTATTAGACATATATTTGACATCTTATTTAGCAAGAT
ATTCCTCGAGAATAGATACAGTTTCCATC---TTGTCAATTACAACTCCGACGTACATTTTTTGCCTCCAAAATCGCCAT
GTCTCACTATACCTTTT-TTCTTAAATTTGCCCTCTCACTGTAAAACTTTTCTTAGATTTTCCTTGAAGATGGCAAATAT
ACTTATCGAATCATTGCAAATTTTAGTTCTCGTATCATGGAAAATTCATTGCTTTCTTGCCATGGCAACTTTTGATTTTT
GGATCATGGCGCATTTTTACTGTTTTCTACCATGACATTTTTTTTGGTAGACCATGGCAACTAATCTTATACTTTTTGCC
ATGTAAACATCAAACATTTAGTTAATTGATCATGGCAAATTTAGTTAACACATCATAACAAACTTGCTTCCTGGTAGATG
GCAAATATAGTTATCGTATCATGGCAAATTTAGCTCTCGGATCATGGCAAATTAATTGCTTTCTTGCCATGGCAACTTTT
GATTTTTT-GAAATTGTCGTTGTAATTCTTTAAATTGTCAAAAACAACACAAAATGGCAAATATTGCCATGGCAAGTTTT
GCTCATTATTTTACCTTTATTAACATGGCTAATTTACCTAAATCCCCATGGTAATTTTTTTAACTTTTATTGCCATGGCA
AG--TTACTATTTATTTGCCATGGCAAATTTACATTTTATTAA
>chr4D_637
ATG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CTCTCACTCCACCGCACTAGCCTTTCCCCATTCTCCTATCCACTCCTCTCCTGGCTACTCCTCGGGCCAACAGCAGCCGT
CGACGGGGAGCGCAACTCGCCTTGTGGCACGGCGGAGCAGGCGGCCGAACAGCCGAAGGATGAGGAAGCTGGTGGAGGCG
CGTTGTGACGGCAGCGGTGCGTGGTGGCTGGCCGAGGACGATGAAGCGAGCGGAGGCGGCGACTCCCAGTCCCAAGCCAG
CGCGGATCAGCGGGGCTCCGACGCCGTGGGAGTTCGTCGTGGACGCCAACGGGGAGCCTGAGGATATGGCTCAGACGGAG
GTGGCGCGGCGCGAGCACTCGGCAGCTGGGGCACGGCGCGGATGCAGCTGCGTGGTTGCGCCTGGAGTGCGAGGAAGCGG
GCGG-GGCAGCGGCGCTGAGGCCCGCTAGACTCTGGTGGATGTGG-CCTTGGTCGCCGCCGTCCGCTGGTCTCTTCGTTC
AGCGAATCGACGCCGGATTTGTAGGGTCCAACGGTGCGGGGTGGCTCTGTTGACCTTGCGCAAGGACGGCGCGCGTGGGG
AAGACAACCACCATGGCCAACCTAGTGGCATCCCTGGGGCTCGGCAATCACGATGCGTTTCGAACTTCGCGGCCCGTGAT
GAGGCGGCCGTCGGCGCCAGAGGTCGACTCCCCTGGTCAACGTCTCCTTCCTA-GAAGGTATGCATCTACTGTTGCCTCT
ACTCTGCTAACACTATCCTTACATGGAAACCTGCATAAATCATGCTTATTAAGACTAAATTGTGAGTGTTGCTTTACTGG
ACAGAAGAGGAGATTATTCTTCAGAGAATTATGGCGTTTCTTTTGGTTTGTAACCATCATCAATAACACATGGGCAACTA
TTCAGTAATCTGTGTACCTTACACTACTTCCTCCTGTTT-GCACTGATGTGTGGATTCCTCAAATTTTGAAGCAGCCTGA
ATGTTACCATCAGATTCTAATTCACTTTGGCATGTCTC-AAATTCTGTTATATTTTTTGCTAGCTGATTTCTGAGTCAAG
TTGTGATAAATTAGCTAGCTTAGCTATGTACT-------------------------------GAAGT---TAGTAGTTC
AGTTTGGTGTGTACCCGAGGTTCTGCTTAAAATAGTTACCATTGTATTAGACATATATTTGACATCTTATTTAGCAAGAT
ATTCCTCGAGAATAGACACAGTTTCCATC---TTGTCAACTACAACTCCGACGTACGTTTTTTGCCTCCAAAATCGCCAT
GTCTCACTATACATTTT-TTCTTAAATTTGCCCTCTAACTATAAAACTTTTCTTAAATTTTCCTGGAAGATGGCAAATAT
ACTAATCGAATCATTGCAAATTTTAGTTCTCGTATCATGGAAAATTCATTGCTTTCTTGCCATGGCAACTTTTGATTTTT
GGATCATGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr4D_749
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CGGCGGAGCAGGGGGCGGAACAACCGGAGGATGAGGAAGCTGGTGGAGGCG
CGGTGTGACGGCAGCGGTGCGTGGTGACTCGCCGAGGACGATGAAGCGAGCGGAGGCGGCGAACCCCAG------GACAG
CGCGGATCAGCGGGGCTCCGACGCCATGGGAGTTCGTCGTGG--------------------------------------
---------CGCGAGCACTCGGCGACTGGGGCACGGCACGGATGCAGCTGCGTGGTTGCGCCTGGAGTGCGAGGAAGCGG
GCGGGGGCAGTGGCGCTGAGGCCCGCTAGACTCCGGTGGATGTGGCCCTTGGTTGCTGCTGTCCGCTAGTCTCTTCGTCC
GGCGAATCGACGCCGGATTTGTAGGGTCCAACGGCGCGGGGTGGCTCTGGTGACCTTGCGCAAGGACGGCGCGCGTGGGG
AAAATAACCACCATGGCCAACCTAGTGGCGTCCCTGGGGCTCGGCAATCACGATGGGGTTCGAACTTCGCGGCCCGTGAC
GAGGCGGCCGTCGGCGCCAGAGGTCGACTCCCCTGGTCAACGTCTCCTTCCTTCGAAGGTATGCATATACTATTGCTTCT
ACTCTGCTAACGCTATCCTTACATGGAAACCTGCATAAATCATGCTTATTAAGACTAAAATGTGAGTGTTGCTTTACTGG
ACGGAAGAAGAGATTATTCTTCAGAGAATTATCGCGCTTCTTTTGGTTTGTAACCATCATCAATAACACATGGGCAACTA
TTCAGTAATCTGTGTACCTTACACTACTTCCTCGTGTTT-GCACTGATATGTGGATTCCTCAAATTTTGAAGCAGCCTGA
ACGTTACCATCAGATTCTAATTCACTTTGGCATGTCTC-AAATTCTGTTATATTTTTTCCTAGCTGATTTCTGAGTCATG
TTGTGATAAATTAGTTAGCTTAGCTATGTACT-------------------------------GAAGT---TA---GTTT
AGTTTGGTGTGTACCCGAGGTTCTGCTTAAAATAGTTACCATTGTATTAGACATATATTTGATATCTTATTTAGCAAAAT
ATTCCTCGAGAATAGATACAGTTTCCATC---TTGTCAACTACAACTCCGACGTACATTTTTTGCCTCCAAAATCGCCAT
GTCTCAATATACATTTT---CTTAAATTTGCCCTCTCACTGTAAAACTTCTCTTAAATTTTCCTGGAAGATGGCAAATAT
ACTTATCGAATCATTGCAAATTTTAGTTCTCGTATCATGGAAAAT-AATTGCTTTCTTGCCATGGCAACTTTTCATTTTT
GGATCATGGCGCATTTTTACTGTTTTCTATCATGACATTTT--TTGGTAGACCATGGCAACTAATCTTATACTTTTTGCC
ATGTAAACATCAAACATTTAGTTAGTTGATCATGGCAAATTTAATTAACACATCATAACAAACTTGCTTCCTGGAAGATG
GCAAATATAGTTATCGTATCATGGCAAATTTAGTTCTCGGATCATGGCAAATTCATTGCTTTCTTGCCATGGCAACTTTT
GATATTTT-GAAATTGTCGTTGTAATTCTTTAAATTGTCAAAAACAAAACAAAATTGCAAATATTTCCATGGCAAGTTTT
ACTAATTATTTCACCATTATTAACATGGCTAATTTACCTAAATCCCCATGGCAATTTTTTTAACTTTTATTGCTAGGGCA
AG-TTTACTATTTATTTGCCATGGCAAATTTACCTTTTATTAA
>chr1A_842
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GAAGCGAGGGGAGGCGGCGACTCCCAG------GCCAG
CGCAGATCAGCGGGGCTCCGACGCCGTGGGAGTTCGTCGTGGACGCCGACGGGGCGCCTGAGGATATGGCTCAGACGGAG
GTGGTGCGGCGCGAGCACTCGGTGGCTGGGGCACGACGCGGATGCAGCTGCGTGGTTGCGTCTGGAGTGCGAGGAAGCGG
GCG--------------GAGGCCCGCTAGACTCCGGTGGATGTGGCCCTTGGTCGCCGCCGTCCGCTGGTCTCTTCGTCC
GGCGAATCGACGCCGGATTTGTAGGATCCAACGGCGTGGGGTGGCTCTGGTGACCTTGCGCAAGGACGGCGCGCATGGGG
AAGACAACCACCATGGCCTTGTAGGG------------------------------------------------------
------------------------------------------------TCCTACGAAGGTATGCATATACTGTTGCCTCT
ACTCTGCTAACGCTATCCTTACACGGAAACCTGCATAAATCATGCTTATTAAGACTAAATTGTGAGTGTTGCTTTACTGG
ACAGAAGAAGAGGTTATTCTTCAGAGAATTATGGCGTTTCTTTTGGTTTGTAACCATCATCAATAACACATGGGCAACTA
TTCAGTAATCTGTGTACCTTACACTACTTCCTCCTGTTT-GCACTGATATGTGGATTCCTCAAATTTTGAAGCAGCCTGA
ACGTTACCATCAGATTCTAATTCACTTTG-CATGTCTCAAAATTCTGTTGTATTTTTTCCTAGCTGATTTCTGAGTCAAG
TTGTGATAAAGTAGTTAGCTTAGCTATGTACT-------------------------------GAAGT---TA---GTTT
AGTTTGGTGTGTACCCGAGGTTCTGCTTAAAATAGTTACCATTGTATTAGACATATATTTGACATCTTATTTAGCAAGAT
ATTCCTCGAGAATAGACATAGTTTTCATC---TTGTCAACTACAACTCCGACGTACATTTTTTGCCTCCAAAATCGCCAT
GTCTCACTATACATTTT-TTCTTAAATTTGCCCTCTCACTGTAAAACTTTTCTTAAATTTTCCTGGAAGATGGCAAATAT
ACTTATCGAATCATTGCAAATTTTAGTTCTCGTATCATGAAAATT-CATTATTTTTTTGCCATGGCAACTTTTGATTTTT
GGATCATGGCGCATTTTTACTGTTTTCTACCATGGCATTTTTTTTGGTAGACCATGGAAACAAATCTTATACTTTTTGCC
ATGTAAGCATCAAACATTTAGTTAATTGATCATGGCAAATTTAGTTAACACATCATAACAAACTTGCTTCCTGGAATATG
GCAAATATAGTTATCGTATCATGGCAAATTTAGTTCTCGGATCATGGCAAATTAATTGCTTTCTTGCCATGGCAACTTTT
GATTTTTT-GAAATTGTCGTTGTAATTCTTTAAATTGTCAAAAACAACACAAAATAGCAAATATTACCATGGCAAGTTTT
GCTAATTATTTTACCTTTATTAACATGGCTAT----CCTAAATCCCCATGGCAA-TTTTTTAACTTTTATTGCCATGGCA
AG--TTACTATTTATTTGCCATGGCAAATTTACCTTTTATTAA
>chr4A_1532
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GTACCTTACACTACTCCCTCCTGTTTTGCACTGATGTGTGGATTCCTCAAATTTTGAAGCAGCCTGA
ATATTACCATCAGATTCTAATTCACTTTGGCACGTCTC-AAATTCTGTTATATTTTTTCCTAGCTGATTTCTGAGTCAAG
TTGTGATAAATTAGTTGA------TATGTACC-------------------------------GAAGTTAGTA---GTTT
AGTGTGGTGTGTACTCGAGGTTCTGCTTAAAATAGTTACCATTGTATTAGACATATATTTGACATCTTATTTAGCAAGAT
ATTCCTCGAGAATAGACACAGTTTCCATC---TTGTCAACTACAACTCCAACGTACTTTTTTTGCCTCCAAAATCGCCAT
GTCTCACTATACATTTTTTTCTTAAATTTGCCCTCTCAATGGAAAACCTTTCTTAAATTTTCCTAGAAGATGGAAAATAT
ACTTATTGAATTATTGCAATTTTTAGTTCTCGTATCATGGAAAATTCATTGCTTTCTTGCCATGGCAACTTTTGATTTTT
GGATCATGGCGCATTTTTACTGTTTTATATCATGACA-TTTTTTTGGTAGACCATGGCAACTAATCTTATACTTTTTGCC
ATGTAAACATCAAACATTTAGTTAATTGATCATGGAAATTTTAGTTAACACATCACAACAAACTTGCTTCCTGGAAGATG
GCAAATATAGTTATCGTATCATGGCAAATTTAGTTCTCGGATCATGGCTAATTCATTGTTTTCTTTCCATGGCAACTTTA
GATTTTTT-AAAATTGTCGTTGTAATTCTTTAAATTGTCAAAAACAACACAAAATGGCAAATATTGCCATGGCAAGTTTT
ACTAATTATTTCACCTTTATTAACATGGTGAATTTACCTAAATCGCCATGGCAA-CTTTTTAACTTTTATGGCCATGGAA
AA-TTTATTATTTATTTGCCATGGAAAATTTACCTTTTATTAA
>chr7A_1908
CATGTACTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----ACTATACATTTT-TTCTTAAATTTGCTGTCTCACTGTATATTTTTTCTTAAATTTTCCTGGAAGATGGCAAATAT
AGTTATCGAATCATGGCAAA-TTTAGTTCTCGGATCATGTAAAATTCATTGCTTTCTTGCCATGGCAACTTTCGATATTT
GGATCATGGCGCAATTTTACTCT---------------------------ACCATGGCAACTAATCTTAT-CTTCTTGCC
ATGTAAGCTTAAAAAATTAGTTAAATTGATGATGGCAAATTTAGTTTACGCATGATAGCAAATTTGCTTTCTTGAAGATG
GCAAATTTAGTTATCGAATCATGGCAATTTTAGTTCTCGGATCATGGTAAATTCATTTCTTTCTTGCCATGGCAACTTTT
GATTGTTT-TAAATTGTCGCGGTAATTCCTTAAATTGTCCAAAACAACACAAAAAGGAAAATATTGCCATGGCAAGTTTT
ACTAATTATTTCACCATCATTAACATGGCGAATTTACCTACATCCCCCATGGAAATTTTTAATACTTTATTGCCATGGCA
AATTTTACTATTTATTTGCCATGGCAAATTTACCTTTTATTAA
>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----
----S----------------------------------S--------------------S-------------------
-------------S----------------------------S--------SSSSSS----S------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
---S-----S--------------------S-------------------------------------------S-----
-----------------------------------------------------S--------------------------
-----------S----------------------------S---------------------------------------
-----------------------------------------------------------------S--------------
-S------S-S---------------------------------------------------------------------
------------------------------------------S------------------------S------------
----------------------S-----------S---------------------------------------------
---------------SSS------------------------------S-------------------S-----------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
---------------S-----------------------S----------------------------------------
------------------------S----SSS----------------S-------------------------S-----
-------------------------------------------S---S--------------S-----------------
-------S---------------S---------------------------------------------------S----
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S---S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>forward_198
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CTCCTACCGGTGAAGGGGTA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_1303
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATCGACTCCCCTTGTCAACG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>forward_362
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ACGTCAACCACTCTGCCAAT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_1315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGTCAACGTCTCCTTCCTAGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>forward_363
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CGTCAACCACTCTGCCAATC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_1429
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTGCTTTACTGG
ACAGAAGAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
