Multiple sequence alignment - TraesCS5D01G016300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G016300 chr5D 100.000 2981 0 0 1 2981 9330318 9333298 0.000000e+00 5505.0
1 TraesCS5D01G016300 chr5A 86.842 988 65 24 340 1320 7494442 7495371 0.000000e+00 1044.0
2 TraesCS5D01G016300 chr5A 89.194 583 51 7 1344 1921 7495362 7495937 0.000000e+00 717.0
3 TraesCS5D01G016300 chr5A 81.495 562 62 26 2445 2981 7496364 7496908 9.880000e-115 424.0
4 TraesCS5D01G016300 chr5A 80.992 242 17 9 2223 2444 7496093 7496325 6.610000e-37 165.0
5 TraesCS5D01G016300 chr5A 81.503 173 13 9 65 235 7493552 7493707 1.120000e-24 124.0
6 TraesCS5D01G016300 chr5A 95.652 46 2 0 262 307 7493762 7493807 1.150000e-09 75.0
7 TraesCS5D01G016300 chr5A 97.059 34 1 0 3 36 318759648 318759681 1.150000e-04 58.4
8 TraesCS5D01G016300 chr5B 87.363 641 45 11 1533 2158 9302922 9303541 0.000000e+00 702.0
9 TraesCS5D01G016300 chr5B 88.631 431 40 5 1081 1502 9302491 9302921 1.580000e-142 516.0
10 TraesCS5D01G016300 chr5B 78.053 606 75 33 412 966 9301789 9302387 2.220000e-86 329.0
11 TraesCS5D01G016300 chr2B 78.310 355 49 17 2208 2538 275325516 275325166 1.400000e-48 204.0
12 TraesCS5D01G016300 chr2A 78.758 306 42 10 2189 2475 286458121 286457820 1.830000e-42 183.0
13 TraesCS5D01G016300 chr7D 80.349 229 40 5 2300 2526 630506239 630506464 5.110000e-38 169.0
14 TraesCS5D01G016300 chr7D 75.668 337 57 12 2196 2511 564175272 564175604 8.610000e-31 145.0
15 TraesCS5D01G016300 chr6A 76.161 323 53 14 2225 2526 66370133 66370452 6.660000e-32 148.0
16 TraesCS5D01G016300 chr2D 76.471 306 41 11 2189 2475 233425543 233425250 1.440000e-28 137.0
17 TraesCS5D01G016300 chr2D 95.556 45 2 0 1 45 122877611 122877567 4.120000e-09 73.1
18 TraesCS5D01G016300 chr4A 97.561 41 1 0 1 41 112586355 112586395 1.480000e-08 71.3
19 TraesCS5D01G016300 chr3B 97.561 41 1 0 1 41 568259813 568259853 1.480000e-08 71.3
20 TraesCS5D01G016300 chr4D 95.349 43 2 0 3 45 428376165 428376123 5.330000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G016300 chr5D 9330318 9333298 2980 False 5505.000000 5505 100.000000 1 2981 1 chr5D.!!$F1 2980
1 TraesCS5D01G016300 chr5A 7493552 7496908 3356 False 424.833333 1044 85.946333 65 2981 6 chr5A.!!$F2 2916
2 TraesCS5D01G016300 chr5B 9301789 9303541 1752 False 515.666667 702 84.682333 412 2158 3 chr5B.!!$F1 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.033228 CCTATTCCTCTCTGCCAGCG 59.967 60.0 0.0 0.0 0.00 5.18 F
49 50 0.033228 CTATTCCTCTCTGCCAGCGG 59.967 60.0 0.0 0.0 0.00 5.52 F
1022 1766 0.034476 CACCACTCTGCTCTTCTGCA 59.966 55.0 0.0 0.0 41.05 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1040 1784 0.550914 TGGTCAACCAGCTTCCAAGT 59.449 50.0 0.00 0.0 42.01 3.16 R
1331 2081 0.938168 GTCGCCGTCGGATTCCATAC 60.938 60.0 17.49 0.0 36.13 2.39 R
2209 2977 0.032678 CTTAGTGCTCATCCGCCGAT 59.967 55.0 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.303257 CCGGTTTGGCTTCCTCTC 57.697 61.111 0.00 0.00 0.00 3.20
18 19 1.741770 CCGGTTTGGCTTCCTCTCG 60.742 63.158 0.00 0.00 0.00 4.04
19 20 1.292223 CGGTTTGGCTTCCTCTCGA 59.708 57.895 0.00 0.00 0.00 4.04
20 21 1.014564 CGGTTTGGCTTCCTCTCGAC 61.015 60.000 0.00 0.00 0.00 4.20
21 22 0.673956 GGTTTGGCTTCCTCTCGACC 60.674 60.000 0.00 0.00 0.00 4.79
22 23 0.321996 GTTTGGCTTCCTCTCGACCT 59.678 55.000 0.00 0.00 0.00 3.85
23 24 0.608640 TTTGGCTTCCTCTCGACCTC 59.391 55.000 0.00 0.00 0.00 3.85
24 25 1.258445 TTGGCTTCCTCTCGACCTCC 61.258 60.000 0.00 0.00 0.00 4.30
25 26 2.428085 GGCTTCCTCTCGACCTCCC 61.428 68.421 0.00 0.00 0.00 4.30
26 27 2.428085 GCTTCCTCTCGACCTCCCC 61.428 68.421 0.00 0.00 0.00 4.81
27 28 1.308326 CTTCCTCTCGACCTCCCCT 59.692 63.158 0.00 0.00 0.00 4.79
28 29 0.551879 CTTCCTCTCGACCTCCCCTA 59.448 60.000 0.00 0.00 0.00 3.53
29 30 0.258194 TTCCTCTCGACCTCCCCTAC 59.742 60.000 0.00 0.00 0.00 3.18
30 31 1.152715 CCTCTCGACCTCCCCTACC 60.153 68.421 0.00 0.00 0.00 3.18
31 32 1.647334 CCTCTCGACCTCCCCTACCT 61.647 65.000 0.00 0.00 0.00 3.08
32 33 1.138568 CTCTCGACCTCCCCTACCTA 58.861 60.000 0.00 0.00 0.00 3.08
33 34 1.706305 CTCTCGACCTCCCCTACCTAT 59.294 57.143 0.00 0.00 0.00 2.57
34 35 2.108601 CTCTCGACCTCCCCTACCTATT 59.891 54.545 0.00 0.00 0.00 1.73
35 36 2.107901 TCTCGACCTCCCCTACCTATTC 59.892 54.545 0.00 0.00 0.00 1.75
36 37 1.146566 TCGACCTCCCCTACCTATTCC 59.853 57.143 0.00 0.00 0.00 3.01
37 38 1.147399 CGACCTCCCCTACCTATTCCT 59.853 57.143 0.00 0.00 0.00 3.36
38 39 2.818593 CGACCTCCCCTACCTATTCCTC 60.819 59.091 0.00 0.00 0.00 3.71
39 40 2.451659 GACCTCCCCTACCTATTCCTCT 59.548 54.545 0.00 0.00 0.00 3.69
40 41 2.451659 ACCTCCCCTACCTATTCCTCTC 59.548 54.545 0.00 0.00 0.00 3.20
41 42 2.725227 CCTCCCCTACCTATTCCTCTCT 59.275 54.545 0.00 0.00 0.00 3.10
42 43 3.501385 CCTCCCCTACCTATTCCTCTCTG 60.501 56.522 0.00 0.00 0.00 3.35
43 44 2.158295 TCCCCTACCTATTCCTCTCTGC 60.158 54.545 0.00 0.00 0.00 4.26
44 45 2.252714 CCCTACCTATTCCTCTCTGCC 58.747 57.143 0.00 0.00 0.00 4.85
45 46 2.426414 CCCTACCTATTCCTCTCTGCCA 60.426 54.545 0.00 0.00 0.00 4.92
46 47 2.896685 CCTACCTATTCCTCTCTGCCAG 59.103 54.545 0.00 0.00 0.00 4.85
47 48 1.127343 ACCTATTCCTCTCTGCCAGC 58.873 55.000 0.00 0.00 0.00 4.85
48 49 0.033228 CCTATTCCTCTCTGCCAGCG 59.967 60.000 0.00 0.00 0.00 5.18
49 50 0.033228 CTATTCCTCTCTGCCAGCGG 59.967 60.000 0.00 0.00 0.00 5.52
50 51 0.397114 TATTCCTCTCTGCCAGCGGA 60.397 55.000 0.44 0.44 33.84 5.54
64 65 2.202987 CGGAGCAGAGGGACATGC 60.203 66.667 0.00 0.00 42.87 4.06
65 66 2.993008 GGAGCAGAGGGACATGCA 59.007 61.111 0.00 0.00 45.01 3.96
66 67 1.153208 GGAGCAGAGGGACATGCAG 60.153 63.158 0.00 0.00 45.01 4.41
67 68 1.601171 GAGCAGAGGGACATGCAGT 59.399 57.895 0.00 0.00 45.01 4.40
68 69 0.743701 GAGCAGAGGGACATGCAGTG 60.744 60.000 0.00 0.00 45.01 3.66
69 70 2.404995 GCAGAGGGACATGCAGTGC 61.405 63.158 8.58 8.58 42.11 4.40
70 71 1.002990 CAGAGGGACATGCAGTGCA 60.003 57.895 22.22 22.22 44.86 4.57
71 72 1.025113 CAGAGGGACATGCAGTGCAG 61.025 60.000 24.20 16.97 43.65 4.41
72 73 1.196766 AGAGGGACATGCAGTGCAGA 61.197 55.000 24.20 0.00 43.65 4.26
73 74 0.743701 GAGGGACATGCAGTGCAGAG 60.744 60.000 24.20 19.78 43.65 3.35
74 75 2.404995 GGGACATGCAGTGCAGAGC 61.405 63.158 24.20 13.86 43.65 4.09
75 76 1.673337 GGACATGCAGTGCAGAGCA 60.673 57.895 24.20 14.58 43.65 4.26
76 77 1.239296 GGACATGCAGTGCAGAGCAA 61.239 55.000 24.20 0.00 43.65 3.91
91 92 3.057946 CAGAGCAAGGACTTTTTACTGCC 60.058 47.826 0.00 0.00 0.00 4.85
93 94 2.623416 AGCAAGGACTTTTTACTGCCAC 59.377 45.455 0.00 0.00 0.00 5.01
116 117 4.323553 AACCTCTGTTACTCACTGTGAC 57.676 45.455 6.36 0.00 35.94 3.67
120 121 8.565500 AACCTCTGTTACTCACTGTGACACAG 62.565 46.154 29.80 29.80 41.60 3.66
128 129 3.229271 TGTGACACAGAGGCTGCA 58.771 55.556 3.56 0.00 34.37 4.41
129 130 1.756665 TGTGACACAGAGGCTGCAT 59.243 52.632 3.56 0.00 34.37 3.96
130 131 0.321034 TGTGACACAGAGGCTGCATC 60.321 55.000 6.12 6.12 34.37 3.91
131 132 1.079612 TGACACAGAGGCTGCATCG 60.080 57.895 8.79 6.63 34.37 3.84
132 133 1.216444 GACACAGAGGCTGCATCGA 59.784 57.895 8.79 0.00 34.37 3.59
133 134 0.179089 GACACAGAGGCTGCATCGAT 60.179 55.000 8.79 0.00 34.37 3.59
134 135 0.461516 ACACAGAGGCTGCATCGATG 60.462 55.000 21.27 21.27 34.37 3.84
168 169 3.587797 AACATGGCTTGAAGCTGATTG 57.412 42.857 17.59 11.44 41.99 2.67
177 178 1.338105 TGAAGCTGATTGTCTGGACGG 60.338 52.381 0.00 0.00 0.00 4.79
178 179 0.687354 AAGCTGATTGTCTGGACGGT 59.313 50.000 0.00 0.00 0.00 4.83
179 180 0.036952 AGCTGATTGTCTGGACGGTG 60.037 55.000 0.00 0.00 0.00 4.94
180 181 1.639298 GCTGATTGTCTGGACGGTGC 61.639 60.000 0.00 0.00 0.00 5.01
204 208 3.555547 TGCATGCATGTACGTCTGATAAC 59.444 43.478 26.79 6.83 0.00 1.89
230 234 2.594303 TGGAAAGGGTGCGTGCAG 60.594 61.111 0.00 0.00 0.00 4.41
231 235 2.594592 GGAAAGGGTGCGTGCAGT 60.595 61.111 0.00 0.00 0.00 4.40
232 236 2.639286 GAAAGGGTGCGTGCAGTG 59.361 61.111 0.00 0.00 0.00 3.66
233 237 3.542629 GAAAGGGTGCGTGCAGTGC 62.543 63.158 8.58 8.58 0.00 4.40
234 238 4.873810 AAGGGTGCGTGCAGTGCA 62.874 61.111 15.37 15.37 40.70 4.57
237 241 4.017877 GGTGCGTGCAGTGCAGTC 62.018 66.667 20.42 13.64 44.21 3.51
238 242 4.017877 GTGCGTGCAGTGCAGTCC 62.018 66.667 20.42 10.26 44.21 3.85
241 245 4.969196 CGTGCAGTGCAGTCCGGT 62.969 66.667 20.42 0.00 40.08 5.28
242 246 3.349006 GTGCAGTGCAGTCCGGTG 61.349 66.667 20.42 0.00 40.08 4.94
245 249 4.624364 CAGTGCAGTCCGGTGCCA 62.624 66.667 13.95 0.56 43.28 4.92
246 250 3.640407 AGTGCAGTCCGGTGCCAT 61.640 61.111 13.95 0.41 43.28 4.40
292 323 2.101582 GTGAGCGAGGGAGTGTGAATAT 59.898 50.000 0.00 0.00 0.00 1.28
295 326 1.202580 GCGAGGGAGTGTGAATATGCT 60.203 52.381 0.00 0.00 0.00 3.79
307 338 5.734498 GTGTGAATATGCTTGACGATTTGAC 59.266 40.000 0.00 0.00 0.00 3.18
308 339 5.411053 TGTGAATATGCTTGACGATTTGACA 59.589 36.000 0.00 0.00 0.00 3.58
309 340 6.072783 TGTGAATATGCTTGACGATTTGACAA 60.073 34.615 0.00 0.00 0.00 3.18
327 943 2.289320 ACAAGAGTTGCTAGCTCCTGTG 60.289 50.000 17.23 12.82 36.59 3.66
331 947 0.537188 GTTGCTAGCTCCTGTGGCTA 59.463 55.000 17.23 0.00 40.74 3.93
336 952 1.347050 CTAGCTCCTGTGGCTATGCAT 59.653 52.381 3.79 3.79 40.79 3.96
339 955 2.173356 AGCTCCTGTGGCTATGCATTTA 59.827 45.455 3.54 0.00 38.36 1.40
340 956 2.291741 GCTCCTGTGGCTATGCATTTAC 59.708 50.000 3.54 0.00 0.00 2.01
341 957 2.880890 CTCCTGTGGCTATGCATTTACC 59.119 50.000 3.54 4.85 0.00 2.85
342 958 2.240921 TCCTGTGGCTATGCATTTACCA 59.759 45.455 3.54 7.77 0.00 3.25
383 1016 1.670406 CCTGTCTGGCTGTCTGTGC 60.670 63.158 0.00 0.00 0.00 4.57
384 1017 1.070275 CTGTCTGGCTGTCTGTGCA 59.930 57.895 0.00 0.00 0.00 4.57
385 1018 0.949588 CTGTCTGGCTGTCTGTGCAG 60.950 60.000 0.00 0.00 39.37 4.41
386 1019 1.070445 GTCTGGCTGTCTGTGCAGT 59.930 57.895 0.00 0.00 38.65 4.40
387 1020 1.070275 TCTGGCTGTCTGTGCAGTG 59.930 57.895 0.00 0.00 38.65 3.66
392 1025 1.839598 GCTGTCTGTGCAGTGCAGTC 61.840 60.000 20.42 8.57 40.08 3.51
401 1034 1.303888 CAGTGCAGTCCAAGCCCAT 60.304 57.895 0.00 0.00 0.00 4.00
404 1037 3.455469 GCAGTCCAAGCCCATGCC 61.455 66.667 0.00 0.00 38.69 4.40
405 1038 2.036098 CAGTCCAAGCCCATGCCA 59.964 61.111 0.00 0.00 38.69 4.92
406 1039 1.380785 CAGTCCAAGCCCATGCCAT 60.381 57.895 0.00 0.00 38.69 4.40
407 1040 1.380785 AGTCCAAGCCCATGCCATG 60.381 57.895 0.00 0.00 38.69 3.66
409 1042 3.078196 CCAAGCCCATGCCATGCA 61.078 61.111 0.00 0.00 44.86 3.96
421 1054 1.105759 GCCATGCATCTCCTGAACCC 61.106 60.000 0.00 0.00 0.00 4.11
474 1112 3.667217 ATCCATGGCGGCCTTGCTT 62.667 57.895 25.08 13.73 34.52 3.91
479 1117 4.426112 GGCGGCCTTGCTTGCTTC 62.426 66.667 12.87 0.00 34.52 3.86
480 1118 4.426112 GCGGCCTTGCTTGCTTCC 62.426 66.667 0.00 0.00 0.00 3.46
589 1238 9.083422 TGTTGTTTTATTTACCATCCATCTTCA 57.917 29.630 0.00 0.00 0.00 3.02
590 1239 9.573133 GTTGTTTTATTTACCATCCATCTTCAG 57.427 33.333 0.00 0.00 0.00 3.02
591 1240 9.527157 TTGTTTTATTTACCATCCATCTTCAGA 57.473 29.630 0.00 0.00 0.00 3.27
592 1241 9.699410 TGTTTTATTTACCATCCATCTTCAGAT 57.301 29.630 0.00 0.00 34.56 2.90
594 1243 8.607441 TTTATTTACCATCCATCTTCAGATCG 57.393 34.615 0.00 0.00 31.21 3.69
595 1244 2.540265 ACCATCCATCTTCAGATCGC 57.460 50.000 0.00 0.00 31.21 4.58
596 1245 1.764723 ACCATCCATCTTCAGATCGCA 59.235 47.619 0.00 0.00 31.21 5.10
597 1246 2.171237 ACCATCCATCTTCAGATCGCAA 59.829 45.455 0.00 0.00 31.21 4.85
598 1247 3.208594 CCATCCATCTTCAGATCGCAAA 58.791 45.455 0.00 0.00 31.21 3.68
599 1248 3.003068 CCATCCATCTTCAGATCGCAAAC 59.997 47.826 0.00 0.00 31.21 2.93
600 1249 3.333029 TCCATCTTCAGATCGCAAACA 57.667 42.857 0.00 0.00 31.21 2.83
601 1250 3.673902 TCCATCTTCAGATCGCAAACAA 58.326 40.909 0.00 0.00 31.21 2.83
602 1251 3.436704 TCCATCTTCAGATCGCAAACAAC 59.563 43.478 0.00 0.00 31.21 3.32
603 1252 3.189080 CCATCTTCAGATCGCAAACAACA 59.811 43.478 0.00 0.00 31.21 3.33
604 1253 4.142534 CCATCTTCAGATCGCAAACAACAT 60.143 41.667 0.00 0.00 31.21 2.71
673 1326 1.668101 CTCCTCAGCGACCACCTACC 61.668 65.000 0.00 0.00 0.00 3.18
674 1327 1.982395 CCTCAGCGACCACCTACCA 60.982 63.158 0.00 0.00 0.00 3.25
675 1328 1.330655 CCTCAGCGACCACCTACCAT 61.331 60.000 0.00 0.00 0.00 3.55
676 1329 0.537188 CTCAGCGACCACCTACCATT 59.463 55.000 0.00 0.00 0.00 3.16
682 1335 2.901249 CGACCACCTACCATTACCAAG 58.099 52.381 0.00 0.00 0.00 3.61
687 1340 3.370527 CCACCTACCATTACCAAGACCAG 60.371 52.174 0.00 0.00 0.00 4.00
701 1367 1.132689 AGACCAGGAGAGTGGACCTTT 60.133 52.381 0.00 0.00 40.44 3.11
702 1368 1.700186 GACCAGGAGAGTGGACCTTTT 59.300 52.381 0.00 0.00 40.44 2.27
731 1397 1.638529 CACAACAGGAGGAGAGGAGT 58.361 55.000 0.00 0.00 0.00 3.85
733 1399 1.148027 ACAACAGGAGGAGAGGAGTGA 59.852 52.381 0.00 0.00 0.00 3.41
734 1400 1.824230 CAACAGGAGGAGAGGAGTGAG 59.176 57.143 0.00 0.00 0.00 3.51
735 1401 0.334676 ACAGGAGGAGAGGAGTGAGG 59.665 60.000 0.00 0.00 0.00 3.86
736 1402 0.628522 CAGGAGGAGAGGAGTGAGGA 59.371 60.000 0.00 0.00 0.00 3.71
737 1403 0.629058 AGGAGGAGAGGAGTGAGGAC 59.371 60.000 0.00 0.00 0.00 3.85
758 1424 3.295973 CCCCCTCTCTGTTTCTCTAGAG 58.704 54.545 13.98 13.98 41.36 2.43
812 1515 3.125829 CAGTGTAATTGTAGCAGCAGTGG 59.874 47.826 0.00 0.00 0.00 4.00
835 1544 3.244181 CCTACCATTGCTTTGCTTTTGGT 60.244 43.478 13.04 13.04 38.50 3.67
858 1567 0.105709 GGAGAAGGAGAGGAGGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
915 1624 3.797353 AGCCCGGCCATGTCGATT 61.797 61.111 5.55 0.00 29.41 3.34
919 1628 0.034756 CCCGGCCATGTCGATTGATA 59.965 55.000 2.24 0.00 29.41 2.15
920 1629 1.339055 CCCGGCCATGTCGATTGATAT 60.339 52.381 2.24 0.00 29.41 1.63
930 1648 6.347969 CCATGTCGATTGATATTGTCCATGAC 60.348 42.308 8.37 0.00 32.88 3.06
960 1678 1.474478 TCAGCCGCTAGAAGTTCAGAG 59.526 52.381 5.50 3.14 0.00 3.35
961 1679 0.174617 AGCCGCTAGAAGTTCAGAGC 59.825 55.000 16.14 16.14 0.00 4.09
962 1680 0.108615 GCCGCTAGAAGTTCAGAGCA 60.109 55.000 22.43 0.00 34.49 4.26
963 1681 1.634702 CCGCTAGAAGTTCAGAGCAC 58.365 55.000 22.43 2.90 34.49 4.40
964 1682 1.067565 CCGCTAGAAGTTCAGAGCACA 60.068 52.381 22.43 0.00 34.49 4.57
968 1707 2.540265 AGAAGTTCAGAGCACACTGG 57.460 50.000 5.50 0.00 38.31 4.00
973 1712 0.836606 TTCAGAGCACACTGGGTTCA 59.163 50.000 0.00 0.00 38.31 3.18
1022 1766 0.034476 CACCACTCTGCTCTTCTGCA 59.966 55.000 0.00 0.00 41.05 4.41
1026 1770 2.429971 CCACTCTGCTCTTCTGCATCTA 59.570 50.000 0.00 0.00 42.48 1.98
1030 1774 5.009911 CACTCTGCTCTTCTGCATCTAGTAT 59.990 44.000 0.00 0.00 42.48 2.12
1038 1782 5.819379 TCTTCTGCATCTAGTATTTGCTTGG 59.181 40.000 0.00 3.41 37.28 3.61
1039 1783 5.357742 TCTGCATCTAGTATTTGCTTGGA 57.642 39.130 0.00 4.96 37.28 3.53
1040 1784 5.744171 TCTGCATCTAGTATTTGCTTGGAA 58.256 37.500 0.00 0.00 37.28 3.53
1041 1785 5.586243 TCTGCATCTAGTATTTGCTTGGAAC 59.414 40.000 0.00 0.00 37.28 3.62
1042 1786 5.500234 TGCATCTAGTATTTGCTTGGAACT 58.500 37.500 9.76 0.00 37.28 3.01
1043 1787 5.945784 TGCATCTAGTATTTGCTTGGAACTT 59.054 36.000 9.76 0.00 37.28 2.66
1044 1788 6.127925 TGCATCTAGTATTTGCTTGGAACTTG 60.128 38.462 9.76 0.00 37.28 3.16
1060 1804 0.954452 CTTGGAAGCTGGTTGACCAC 59.046 55.000 0.00 0.00 42.01 4.16
1258 2008 4.802051 GATGCTTCCCCTGCGCCA 62.802 66.667 4.18 0.00 0.00 5.69
1334 2084 4.609995 CGAGGGCGTTGTTGGTAT 57.390 55.556 0.00 0.00 0.00 2.73
1416 2166 2.670592 TGCTCCGACGACGAGGAA 60.671 61.111 9.28 2.48 42.66 3.36
1417 2167 2.044555 TGCTCCGACGACGAGGAAT 61.045 57.895 9.28 0.00 42.66 3.01
1418 2168 1.586564 GCTCCGACGACGAGGAATG 60.587 63.158 9.28 8.07 42.66 2.67
1428 2181 4.808649 GAGGAATGGTCGTCGTCC 57.191 61.111 1.17 1.17 0.00 4.79
1451 2204 3.787458 GCTCAGCGACTGTAAGCC 58.213 61.111 6.72 0.00 37.60 4.35
1490 2243 0.250338 ACTTCACCGTTCCAAGGAGC 60.250 55.000 0.00 0.00 0.00 4.70
1508 2261 1.207570 AGCATTCTCCTCTGTCAGCAG 59.792 52.381 0.00 0.00 43.87 4.24
1520 2273 2.433604 CTGTCAGCAGAGTCATACCCAT 59.566 50.000 0.00 0.00 45.28 4.00
1566 2319 5.819379 TGCTCTGCTTCTTGATAAATACAGG 59.181 40.000 0.00 0.00 0.00 4.00
1567 2320 5.238214 GCTCTGCTTCTTGATAAATACAGGG 59.762 44.000 0.00 0.00 0.00 4.45
1593 2347 1.968703 GAGGAGGACGACGACGACAG 61.969 65.000 15.32 0.00 42.66 3.51
1681 2441 3.228499 GAGGAAGGTGGTTTCGTCC 57.772 57.895 0.00 0.00 36.47 4.79
1743 2503 2.574399 GGAGCTGGACCTGTCGAC 59.426 66.667 9.11 9.11 0.00 4.20
1753 2513 1.258445 ACCTGTCGACCTCCATGTCC 61.258 60.000 14.12 0.00 31.35 4.02
1754 2514 1.257750 CCTGTCGACCTCCATGTCCA 61.258 60.000 14.12 0.00 31.35 4.02
1755 2515 0.826715 CTGTCGACCTCCATGTCCAT 59.173 55.000 14.12 0.00 31.35 3.41
1757 2517 0.537188 GTCGACCTCCATGTCCATGT 59.463 55.000 3.51 0.00 37.11 3.21
1758 2518 0.824109 TCGACCTCCATGTCCATGTC 59.176 55.000 6.53 0.00 37.11 3.06
1761 2521 1.524621 CCTCCATGTCCATGTCGGC 60.525 63.158 6.53 0.00 37.11 5.54
1763 2523 2.186644 CCATGTCCATGTCGGCGA 59.813 61.111 4.99 4.99 37.11 5.54
1831 2591 0.755686 AGGCCATGATCTTCGAGGAC 59.244 55.000 5.01 0.00 0.00 3.85
1921 2685 1.742140 CTGCAGCTGGCTGAGTGAG 60.742 63.158 24.40 10.72 46.30 3.51
1922 2686 2.346739 GCAGCTGGCTGAGTGAGT 59.653 61.111 24.40 0.00 46.30 3.41
1923 2687 1.302351 GCAGCTGGCTGAGTGAGTT 60.302 57.895 24.40 0.00 46.30 3.01
1924 2688 1.575576 GCAGCTGGCTGAGTGAGTTG 61.576 60.000 24.40 0.00 46.30 3.16
1925 2689 0.034476 CAGCTGGCTGAGTGAGTTGA 59.966 55.000 16.59 0.00 46.30 3.18
1926 2690 0.982704 AGCTGGCTGAGTGAGTTGAT 59.017 50.000 0.00 0.00 0.00 2.57
1967 2731 7.362920 CCATTTCTGGGTTCAGTTGGTATAAAG 60.363 40.741 0.00 0.00 41.59 1.85
2056 2822 0.981183 TTGTAGTACAGGGCAGTGGG 59.019 55.000 2.68 0.00 0.00 4.61
2057 2823 0.907704 TGTAGTACAGGGCAGTGGGG 60.908 60.000 0.00 0.00 0.00 4.96
2084 2852 5.447144 CCGATGCAAAAATGTATGACTCGAA 60.447 40.000 0.00 0.00 0.00 3.71
2085 2853 5.674148 CGATGCAAAAATGTATGACTCGAAG 59.326 40.000 0.00 0.00 0.00 3.79
2087 2855 6.552859 TGCAAAAATGTATGACTCGAAGAA 57.447 33.333 0.00 0.00 34.09 2.52
2088 2856 6.602179 TGCAAAAATGTATGACTCGAAGAAG 58.398 36.000 0.00 0.00 34.09 2.85
2092 2860 9.663904 CAAAAATGTATGACTCGAAGAAGAAAA 57.336 29.630 0.00 0.00 34.09 2.29
2132 2900 8.834465 CCAGGAGATATTTCACATTTTCTACTG 58.166 37.037 3.48 3.48 40.38 2.74
2135 2903 8.341173 GGAGATATTTCACATTTTCTACTGCAG 58.659 37.037 13.48 13.48 0.00 4.41
2136 2904 8.218338 AGATATTTCACATTTTCTACTGCAGG 57.782 34.615 19.93 0.36 0.00 4.85
2158 2926 4.319177 GAGAGTTTAGACATGTTGCTGGT 58.681 43.478 0.00 0.00 0.00 4.00
2159 2927 4.067896 AGAGTTTAGACATGTTGCTGGTG 58.932 43.478 0.00 0.00 0.00 4.17
2160 2928 2.554032 AGTTTAGACATGTTGCTGGTGC 59.446 45.455 0.00 0.00 40.20 5.01
2161 2929 2.554032 GTTTAGACATGTTGCTGGTGCT 59.446 45.455 0.00 0.00 40.48 4.40
2162 2930 1.812235 TAGACATGTTGCTGGTGCTG 58.188 50.000 0.00 0.00 40.48 4.41
2163 2931 0.892358 AGACATGTTGCTGGTGCTGG 60.892 55.000 0.00 0.00 40.48 4.85
2164 2932 0.890542 GACATGTTGCTGGTGCTGGA 60.891 55.000 0.00 0.00 40.48 3.86
2165 2933 0.892358 ACATGTTGCTGGTGCTGGAG 60.892 55.000 0.00 0.00 40.48 3.86
2166 2934 0.607217 CATGTTGCTGGTGCTGGAGA 60.607 55.000 0.00 0.00 40.48 3.71
2167 2935 0.330604 ATGTTGCTGGTGCTGGAGAT 59.669 50.000 0.00 0.00 40.48 2.75
2168 2936 0.607217 TGTTGCTGGTGCTGGAGATG 60.607 55.000 0.00 0.00 40.48 2.90
2169 2937 1.676635 TTGCTGGTGCTGGAGATGC 60.677 57.895 0.00 0.00 40.48 3.91
2170 2938 2.133359 TTGCTGGTGCTGGAGATGCT 62.133 55.000 0.00 0.00 40.48 3.79
2171 2939 1.378250 GCTGGTGCTGGAGATGCTT 60.378 57.895 0.00 0.00 36.03 3.91
2172 2940 0.964358 GCTGGTGCTGGAGATGCTTT 60.964 55.000 0.00 0.00 36.03 3.51
2173 2941 1.679944 GCTGGTGCTGGAGATGCTTTA 60.680 52.381 0.00 0.00 36.03 1.85
2205 2973 4.235939 TGAAAACATCACCAATTCACCG 57.764 40.909 0.00 0.00 31.50 4.94
2206 2974 3.885901 TGAAAACATCACCAATTCACCGA 59.114 39.130 0.00 0.00 31.50 4.69
2207 2975 4.522405 TGAAAACATCACCAATTCACCGAT 59.478 37.500 0.00 0.00 31.50 4.18
2209 2977 6.207614 TGAAAACATCACCAATTCACCGATTA 59.792 34.615 0.00 0.00 31.50 1.75
2211 2979 6.377327 AACATCACCAATTCACCGATTATC 57.623 37.500 0.00 0.00 0.00 1.75
2212 2980 4.511454 ACATCACCAATTCACCGATTATCG 59.489 41.667 7.74 7.74 40.07 2.92
2224 3017 1.071605 GATTATCGGCGGATGAGCAC 58.928 55.000 16.41 1.92 39.27 4.40
2235 3028 4.865365 GGCGGATGAGCACTAAGATTATAC 59.135 45.833 0.00 0.00 39.27 1.47
2283 3076 3.319238 CGATTTATCGCCCTGACAAAC 57.681 47.619 0.00 0.00 43.84 2.93
2295 3088 4.201822 GCCCTGACAAACGATTAATCAGAC 60.202 45.833 15.57 7.69 39.33 3.51
2296 3089 4.332819 CCCTGACAAACGATTAATCAGACC 59.667 45.833 15.57 0.51 39.33 3.85
2297 3090 4.332819 CCTGACAAACGATTAATCAGACCC 59.667 45.833 15.57 1.01 39.33 4.46
2303 3116 2.777692 ACGATTAATCAGACCCACCCAT 59.222 45.455 15.57 0.00 0.00 4.00
2304 3117 3.141398 CGATTAATCAGACCCACCCATG 58.859 50.000 15.57 0.00 0.00 3.66
2325 3138 2.171659 GTGGTCAAAACCCCCAAAACAT 59.828 45.455 0.00 0.00 45.83 2.71
2341 3154 1.000521 CATGGCTTCCCCTTCAGCA 60.001 57.895 0.00 0.00 37.81 4.41
2342 3155 1.035932 CATGGCTTCCCCTTCAGCAG 61.036 60.000 0.00 0.00 37.81 4.24
2343 3156 2.753446 GGCTTCCCCTTCAGCAGC 60.753 66.667 0.00 0.00 37.81 5.25
2344 3157 2.753446 GCTTCCCCTTCAGCAGCC 60.753 66.667 0.00 0.00 35.95 4.85
2345 3158 3.085223 CTTCCCCTTCAGCAGCCT 58.915 61.111 0.00 0.00 0.00 4.58
2346 3159 1.381851 CTTCCCCTTCAGCAGCCTT 59.618 57.895 0.00 0.00 0.00 4.35
2347 3160 0.679321 CTTCCCCTTCAGCAGCCTTC 60.679 60.000 0.00 0.00 0.00 3.46
2348 3161 2.044551 CCCCTTCAGCAGCCTTCC 60.045 66.667 0.00 0.00 0.00 3.46
2352 3165 1.748122 CTTCAGCAGCCTTCCGCAT 60.748 57.895 0.00 0.00 41.38 4.73
2366 3179 3.111853 TCCGCATATCACACTTCATCC 57.888 47.619 0.00 0.00 0.00 3.51
2374 3187 6.745190 GCATATCACACTTCATCCCCTATTCA 60.745 42.308 0.00 0.00 0.00 2.57
2378 3191 6.591935 TCACACTTCATCCCCTATTCAATAC 58.408 40.000 0.00 0.00 0.00 1.89
2382 3195 2.304761 TCATCCCCTATTCAATACGGCC 59.695 50.000 0.00 0.00 0.00 6.13
2402 3215 4.081309 GGCCTGTGTTGTAGTATTGTCCTA 60.081 45.833 0.00 0.00 0.00 2.94
2403 3216 5.396436 GGCCTGTGTTGTAGTATTGTCCTAT 60.396 44.000 0.00 0.00 0.00 2.57
2404 3217 6.113411 GCCTGTGTTGTAGTATTGTCCTATT 58.887 40.000 0.00 0.00 0.00 1.73
2505 3357 3.689649 AGAACACAATAATGGTCGCTTCC 59.310 43.478 0.00 0.00 41.48 3.46
2526 3378 5.772521 TCCATTTTTAGCTTTCAGTGCTTC 58.227 37.500 0.00 0.00 41.46 3.86
2528 3380 4.893424 TTTTTAGCTTTCAGTGCTTCGT 57.107 36.364 0.00 0.00 41.46 3.85
2531 3383 2.821991 AGCTTTCAGTGCTTCGTACT 57.178 45.000 0.00 0.00 37.52 2.73
2532 3384 3.936372 AGCTTTCAGTGCTTCGTACTA 57.064 42.857 0.00 0.00 37.52 1.82
2533 3385 4.252971 AGCTTTCAGTGCTTCGTACTAA 57.747 40.909 0.00 0.00 37.52 2.24
2570 3425 8.926710 AGTCGATCGATAAATCAATTAATCACC 58.073 33.333 22.50 1.25 0.00 4.02
2592 3447 8.265055 TCACCGATTTCTGGTTAATCTCTTATT 58.735 33.333 0.00 0.00 37.72 1.40
2593 3448 9.542462 CACCGATTTCTGGTTAATCTCTTATTA 57.458 33.333 0.00 0.00 37.72 0.98
2597 3452 9.865484 GATTTCTGGTTAATCTCTTATTAACGC 57.135 33.333 12.16 7.74 42.39 4.84
2601 3456 9.525409 TCTGGTTAATCTCTTATTAACGCTAAC 57.475 33.333 12.16 2.53 42.39 2.34
2602 3457 8.343974 TGGTTAATCTCTTATTAACGCTAACG 57.656 34.615 12.16 0.00 42.39 3.18
2603 3458 8.190122 TGGTTAATCTCTTATTAACGCTAACGA 58.810 33.333 12.16 0.00 42.39 3.85
2604 3459 9.189723 GGTTAATCTCTTATTAACGCTAACGAT 57.810 33.333 12.16 0.00 42.39 3.73
2619 3485 6.028368 CGCTAACGATAAACGATATCCTCAT 58.972 40.000 0.00 0.00 45.77 2.90
2697 3565 1.916181 AGGGCCACTAGCAAATGTACT 59.084 47.619 6.18 0.00 46.50 2.73
2712 3580 7.880195 AGCAAATGTACTACAAGACTGATTTCT 59.120 33.333 0.00 0.00 0.00 2.52
2720 3588 7.151308 ACTACAAGACTGATTTCTGAACTCTG 58.849 38.462 11.34 11.34 0.00 3.35
2731 3599 4.307443 TCTGAACTCTGTATACGCATGG 57.693 45.455 0.00 0.00 0.00 3.66
2744 3612 3.648339 ACGCATGGCAAAATATCATCC 57.352 42.857 0.00 0.00 0.00 3.51
2746 3614 3.384146 ACGCATGGCAAAATATCATCCAA 59.616 39.130 0.00 0.00 0.00 3.53
2768 3636 3.327757 ACACCACTCAGTACATTGGACAT 59.672 43.478 1.02 0.00 33.02 3.06
2769 3637 4.202461 ACACCACTCAGTACATTGGACATT 60.202 41.667 1.02 0.00 33.02 2.71
2802 3670 7.645058 ATTACAACTGGATTACAAGATTGGG 57.355 36.000 0.00 0.00 0.00 4.12
2803 3671 5.255397 ACAACTGGATTACAAGATTGGGA 57.745 39.130 0.00 0.00 0.00 4.37
2804 3672 5.640147 ACAACTGGATTACAAGATTGGGAA 58.360 37.500 0.00 0.00 0.00 3.97
2805 3673 5.476945 ACAACTGGATTACAAGATTGGGAAC 59.523 40.000 0.00 0.00 0.00 3.62
2806 3674 5.520748 ACTGGATTACAAGATTGGGAACT 57.479 39.130 0.00 0.00 0.00 3.01
2807 3675 5.501156 ACTGGATTACAAGATTGGGAACTC 58.499 41.667 0.00 0.00 0.00 3.01
2813 3681 3.251484 ACAAGATTGGGAACTCAGAGGA 58.749 45.455 1.53 0.00 0.00 3.71
2822 3690 2.296471 GGAACTCAGAGGAAGAACGACA 59.704 50.000 1.53 0.00 0.00 4.35
2825 3693 3.718815 ACTCAGAGGAAGAACGACAAAC 58.281 45.455 1.53 0.00 0.00 2.93
2827 3695 2.698797 TCAGAGGAAGAACGACAAACCT 59.301 45.455 0.00 0.00 0.00 3.50
2830 3698 2.985139 GAGGAAGAACGACAAACCTACG 59.015 50.000 0.00 0.00 0.00 3.51
2833 3701 2.450609 AGAACGACAAACCTACGCAT 57.549 45.000 0.00 0.00 0.00 4.73
2834 3702 2.066262 AGAACGACAAACCTACGCATG 58.934 47.619 0.00 0.00 0.00 4.06
2840 3708 1.671054 AAACCTACGCATGCACGCT 60.671 52.632 19.57 0.00 36.19 5.07
2841 3709 0.390603 AAACCTACGCATGCACGCTA 60.391 50.000 19.57 0.00 36.19 4.26
2842 3710 1.082117 AACCTACGCATGCACGCTAC 61.082 55.000 19.57 0.00 36.19 3.58
2863 3737 5.856126 ACGTTTATTCAATGTGACGACAT 57.144 34.783 8.43 0.00 45.24 3.06
2866 3740 5.063438 CGTTTATTCAATGTGACGACATCCT 59.937 40.000 0.00 0.00 42.30 3.24
2869 3743 3.893326 TCAATGTGACGACATCCTCAT 57.107 42.857 0.00 0.00 42.30 2.90
2871 3745 3.934579 TCAATGTGACGACATCCTCATTG 59.065 43.478 16.86 16.86 42.30 2.82
2879 3753 0.106819 ACATCCTCATTGCTCTGGCC 60.107 55.000 0.00 0.00 37.74 5.36
2880 3754 1.147824 ATCCTCATTGCTCTGGCCG 59.852 57.895 0.00 0.00 37.74 6.13
2881 3755 1.340399 ATCCTCATTGCTCTGGCCGA 61.340 55.000 0.00 0.00 37.74 5.54
2882 3756 1.817099 CCTCATTGCTCTGGCCGAC 60.817 63.158 0.00 0.00 37.74 4.79
2883 3757 1.220206 CTCATTGCTCTGGCCGACT 59.780 57.895 0.00 0.00 37.74 4.18
2884 3758 1.078918 TCATTGCTCTGGCCGACTG 60.079 57.895 0.00 0.00 37.74 3.51
2885 3759 2.110967 CATTGCTCTGGCCGACTGG 61.111 63.158 0.00 0.00 37.74 4.00
2922 3796 9.120422 CGTAACAAAAACCCTAATTATGTGAAC 57.880 33.333 0.00 0.00 0.00 3.18
2938 3812 8.827177 TTATGTGAACATTACGAAAAGAGACT 57.173 30.769 0.47 0.00 37.76 3.24
2940 3814 6.277605 TGTGAACATTACGAAAAGAGACTGA 58.722 36.000 0.00 0.00 0.00 3.41
2946 3820 3.821421 ACGAAAAGAGACTGAAGGTGT 57.179 42.857 0.00 0.00 0.00 4.16
2956 3830 9.793259 AAAGAGACTGAAGGTGTGAATAATAAA 57.207 29.630 0.00 0.00 0.00 1.40
2957 3831 9.442047 AAGAGACTGAAGGTGTGAATAATAAAG 57.558 33.333 0.00 0.00 0.00 1.85
2958 3832 8.043710 AGAGACTGAAGGTGTGAATAATAAAGG 58.956 37.037 0.00 0.00 0.00 3.11
2959 3833 7.112779 AGACTGAAGGTGTGAATAATAAAGGG 58.887 38.462 0.00 0.00 0.00 3.95
2967 3841 4.229582 TGTGAATAATAAAGGGGGCAGAGT 59.770 41.667 0.00 0.00 0.00 3.24
2968 3842 4.822350 GTGAATAATAAAGGGGGCAGAGTC 59.178 45.833 0.00 0.00 0.00 3.36
2969 3843 4.726825 TGAATAATAAAGGGGGCAGAGTCT 59.273 41.667 0.00 0.00 0.00 3.24
2970 3844 4.984146 ATAATAAAGGGGGCAGAGTCTC 57.016 45.455 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.014564 GTCGAGAGGAAGCCAAACCG 61.015 60.000 0.00 0.00 0.00 4.44
3 4 0.321996 AGGTCGAGAGGAAGCCAAAC 59.678 55.000 0.00 0.00 0.00 2.93
5 6 1.258445 GGAGGTCGAGAGGAAGCCAA 61.258 60.000 0.00 0.00 0.00 4.52
8 9 2.428085 GGGGAGGTCGAGAGGAAGC 61.428 68.421 0.00 0.00 0.00 3.86
9 10 0.551879 TAGGGGAGGTCGAGAGGAAG 59.448 60.000 0.00 0.00 0.00 3.46
10 11 0.258194 GTAGGGGAGGTCGAGAGGAA 59.742 60.000 0.00 0.00 0.00 3.36
11 12 1.643475 GGTAGGGGAGGTCGAGAGGA 61.643 65.000 0.00 0.00 0.00 3.71
12 13 1.152715 GGTAGGGGAGGTCGAGAGG 60.153 68.421 0.00 0.00 0.00 3.69
13 14 1.138568 TAGGTAGGGGAGGTCGAGAG 58.861 60.000 0.00 0.00 0.00 3.20
14 15 1.830486 ATAGGTAGGGGAGGTCGAGA 58.170 55.000 0.00 0.00 0.00 4.04
15 16 2.516906 GAATAGGTAGGGGAGGTCGAG 58.483 57.143 0.00 0.00 0.00 4.04
16 17 1.146566 GGAATAGGTAGGGGAGGTCGA 59.853 57.143 0.00 0.00 0.00 4.20
17 18 1.147399 AGGAATAGGTAGGGGAGGTCG 59.853 57.143 0.00 0.00 0.00 4.79
18 19 2.451659 AGAGGAATAGGTAGGGGAGGTC 59.548 54.545 0.00 0.00 0.00 3.85
19 20 2.451659 GAGAGGAATAGGTAGGGGAGGT 59.548 54.545 0.00 0.00 0.00 3.85
20 21 2.725227 AGAGAGGAATAGGTAGGGGAGG 59.275 54.545 0.00 0.00 0.00 4.30
21 22 3.773560 CAGAGAGGAATAGGTAGGGGAG 58.226 54.545 0.00 0.00 0.00 4.30
22 23 2.158295 GCAGAGAGGAATAGGTAGGGGA 60.158 54.545 0.00 0.00 0.00 4.81
23 24 2.252714 GCAGAGAGGAATAGGTAGGGG 58.747 57.143 0.00 0.00 0.00 4.79
24 25 2.252714 GGCAGAGAGGAATAGGTAGGG 58.747 57.143 0.00 0.00 0.00 3.53
25 26 2.896685 CTGGCAGAGAGGAATAGGTAGG 59.103 54.545 9.42 0.00 0.00 3.18
26 27 2.298729 GCTGGCAGAGAGGAATAGGTAG 59.701 54.545 20.86 0.00 0.00 3.18
27 28 2.320781 GCTGGCAGAGAGGAATAGGTA 58.679 52.381 20.86 0.00 0.00 3.08
28 29 1.127343 GCTGGCAGAGAGGAATAGGT 58.873 55.000 20.86 0.00 0.00 3.08
29 30 0.033228 CGCTGGCAGAGAGGAATAGG 59.967 60.000 20.86 0.00 0.00 2.57
30 31 0.033228 CCGCTGGCAGAGAGGAATAG 59.967 60.000 20.86 0.00 44.32 1.73
31 32 0.397114 TCCGCTGGCAGAGAGGAATA 60.397 55.000 20.86 0.00 46.84 1.75
32 33 1.687146 TCCGCTGGCAGAGAGGAAT 60.687 57.895 20.86 0.00 46.84 3.01
33 34 2.283894 TCCGCTGGCAGAGAGGAA 60.284 61.111 20.86 5.57 46.84 3.36
35 36 4.527583 GCTCCGCTGGCAGAGAGG 62.528 72.222 26.51 21.27 42.95 3.69
36 37 3.767806 TGCTCCGCTGGCAGAGAG 61.768 66.667 20.86 22.40 34.56 3.20
43 44 4.154347 GTCCCTCTGCTCCGCTGG 62.154 72.222 0.00 0.00 0.00 4.85
44 45 2.729479 ATGTCCCTCTGCTCCGCTG 61.729 63.158 0.00 0.00 0.00 5.18
45 46 2.364842 ATGTCCCTCTGCTCCGCT 60.365 61.111 0.00 0.00 0.00 5.52
46 47 2.202987 CATGTCCCTCTGCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
47 48 2.202987 GCATGTCCCTCTGCTCCG 60.203 66.667 0.00 0.00 35.49 4.63
48 49 1.153208 CTGCATGTCCCTCTGCTCC 60.153 63.158 0.00 0.00 39.16 4.70
49 50 0.743701 CACTGCATGTCCCTCTGCTC 60.744 60.000 0.00 0.00 39.16 4.26
50 51 1.298993 CACTGCATGTCCCTCTGCT 59.701 57.895 0.00 0.00 39.16 4.24
51 52 2.404995 GCACTGCATGTCCCTCTGC 61.405 63.158 0.00 0.00 38.87 4.26
52 53 1.002990 TGCACTGCATGTCCCTCTG 60.003 57.895 0.00 0.00 31.71 3.35
53 54 1.196766 TCTGCACTGCATGTCCCTCT 61.197 55.000 3.64 0.00 38.13 3.69
54 55 0.743701 CTCTGCACTGCATGTCCCTC 60.744 60.000 3.64 0.00 38.13 4.30
55 56 1.298993 CTCTGCACTGCATGTCCCT 59.701 57.895 3.64 0.00 38.13 4.20
56 57 2.404995 GCTCTGCACTGCATGTCCC 61.405 63.158 3.64 0.00 38.13 4.46
57 58 1.239296 TTGCTCTGCACTGCATGTCC 61.239 55.000 3.64 0.00 38.71 4.02
58 59 0.168348 CTTGCTCTGCACTGCATGTC 59.832 55.000 3.64 0.00 38.71 3.06
59 60 1.241990 CCTTGCTCTGCACTGCATGT 61.242 55.000 3.64 0.00 38.71 3.21
60 61 0.958876 TCCTTGCTCTGCACTGCATG 60.959 55.000 3.64 11.02 38.71 4.06
61 62 0.959372 GTCCTTGCTCTGCACTGCAT 60.959 55.000 3.64 0.00 38.71 3.96
62 63 1.598962 GTCCTTGCTCTGCACTGCA 60.599 57.895 3.11 3.11 38.71 4.41
63 64 0.888285 AAGTCCTTGCTCTGCACTGC 60.888 55.000 0.00 0.00 38.71 4.40
64 65 1.602311 AAAGTCCTTGCTCTGCACTG 58.398 50.000 0.00 0.00 38.71 3.66
65 66 2.355010 AAAAGTCCTTGCTCTGCACT 57.645 45.000 0.00 0.00 38.71 4.40
66 67 3.565902 AGTAAAAAGTCCTTGCTCTGCAC 59.434 43.478 0.00 0.00 38.71 4.57
67 68 3.565482 CAGTAAAAAGTCCTTGCTCTGCA 59.435 43.478 0.00 0.00 36.47 4.41
68 69 3.610349 GCAGTAAAAAGTCCTTGCTCTGC 60.610 47.826 0.00 0.00 38.76 4.26
69 70 3.057946 GGCAGTAAAAAGTCCTTGCTCTG 60.058 47.826 0.00 0.00 0.00 3.35
70 71 3.149981 GGCAGTAAAAAGTCCTTGCTCT 58.850 45.455 0.00 0.00 0.00 4.09
71 72 2.884639 TGGCAGTAAAAAGTCCTTGCTC 59.115 45.455 0.00 0.00 0.00 4.26
72 73 2.623416 GTGGCAGTAAAAAGTCCTTGCT 59.377 45.455 0.00 0.00 0.00 3.91
73 74 2.360801 TGTGGCAGTAAAAAGTCCTTGC 59.639 45.455 0.00 0.00 0.00 4.01
74 75 4.647424 TTGTGGCAGTAAAAAGTCCTTG 57.353 40.909 0.00 0.00 0.00 3.61
75 76 4.142026 GGTTTGTGGCAGTAAAAAGTCCTT 60.142 41.667 0.00 0.00 0.00 3.36
76 77 3.383505 GGTTTGTGGCAGTAAAAAGTCCT 59.616 43.478 0.00 0.00 0.00 3.85
91 92 4.271049 CACAGTGAGTAACAGAGGTTTGTG 59.729 45.833 0.00 0.00 38.45 3.33
93 94 4.508124 GTCACAGTGAGTAACAGAGGTTTG 59.492 45.833 2.53 0.00 38.45 2.93
116 117 2.308344 CATCGATGCAGCCTCTGTG 58.692 57.895 13.37 0.00 33.43 3.66
127 128 3.524763 TTAATCATGCACGCATCGATG 57.475 42.857 21.27 21.27 33.90 3.84
128 129 4.201901 TGTTTTAATCATGCACGCATCGAT 60.202 37.500 0.44 6.37 33.90 3.59
129 130 3.126000 TGTTTTAATCATGCACGCATCGA 59.874 39.130 0.44 4.30 33.90 3.59
130 131 3.424487 TGTTTTAATCATGCACGCATCG 58.576 40.909 0.44 0.00 33.90 3.84
131 132 4.207635 CCATGTTTTAATCATGCACGCATC 59.792 41.667 0.44 0.00 40.63 3.91
132 133 4.114073 CCATGTTTTAATCATGCACGCAT 58.886 39.130 9.74 0.00 40.63 4.73
133 134 3.509740 CCATGTTTTAATCATGCACGCA 58.490 40.909 9.74 0.00 40.63 5.24
134 135 2.282290 GCCATGTTTTAATCATGCACGC 59.718 45.455 9.74 5.58 40.63 5.34
135 136 3.772932 AGCCATGTTTTAATCATGCACG 58.227 40.909 9.74 0.00 40.63 5.34
136 137 5.170021 TCAAGCCATGTTTTAATCATGCAC 58.830 37.500 9.74 5.28 40.63 4.57
168 169 1.746615 ATGCATGCACCGTCCAGAC 60.747 57.895 25.37 0.00 0.00 3.51
204 208 2.437359 CCCTTTCCAGCGCTGAGG 60.437 66.667 38.06 32.45 0.00 3.86
225 229 3.349006 CACCGGACTGCACTGCAC 61.349 66.667 9.46 0.00 33.79 4.57
230 234 2.106683 GTATGGCACCGGACTGCAC 61.107 63.158 17.82 8.55 39.08 4.57
231 235 1.909459 ATGTATGGCACCGGACTGCA 61.909 55.000 17.82 5.68 39.08 4.41
232 236 1.153168 ATGTATGGCACCGGACTGC 60.153 57.895 9.46 8.88 36.33 4.40
233 237 0.815213 CCATGTATGGCACCGGACTG 60.815 60.000 9.46 0.00 41.75 3.51
234 238 1.526887 CCATGTATGGCACCGGACT 59.473 57.895 9.46 0.00 41.75 3.85
240 244 2.155643 GATGGGCTCCATGTATGGCAC 61.156 57.143 10.99 0.87 45.26 5.01
241 245 0.111061 GATGGGCTCCATGTATGGCA 59.889 55.000 10.99 0.00 45.26 4.92
242 246 0.610232 GGATGGGCTCCATGTATGGC 60.610 60.000 10.99 0.00 45.26 4.40
244 248 0.957395 GCGGATGGGCTCCATGTATG 60.957 60.000 10.99 0.97 45.26 2.39
245 249 1.130054 AGCGGATGGGCTCCATGTAT 61.130 55.000 10.99 0.00 45.26 2.29
246 250 1.766059 AGCGGATGGGCTCCATGTA 60.766 57.895 10.99 0.00 45.26 2.29
292 323 3.466836 ACTCTTGTCAAATCGTCAAGCA 58.533 40.909 0.00 0.00 39.67 3.91
295 326 3.876914 AGCAACTCTTGTCAAATCGTCAA 59.123 39.130 0.00 0.00 0.00 3.18
307 338 2.344950 CACAGGAGCTAGCAACTCTTG 58.655 52.381 18.83 14.51 44.40 3.02
308 339 1.277557 CCACAGGAGCTAGCAACTCTT 59.722 52.381 18.83 0.00 34.46 2.85
309 340 0.901124 CCACAGGAGCTAGCAACTCT 59.099 55.000 18.83 5.44 34.46 3.24
314 345 0.755079 CATAGCCACAGGAGCTAGCA 59.245 55.000 18.83 0.00 45.52 3.49
327 943 4.370917 CCAACAATGGTAAATGCATAGCC 58.629 43.478 0.00 3.26 42.18 3.93
336 952 5.825660 GCAGAAGCCTCCAACAATGGTAAA 61.826 45.833 0.00 0.00 40.51 2.01
339 955 2.161637 GCAGAAGCCTCCAACAATGGT 61.162 52.381 0.00 0.00 40.51 3.55
340 956 0.529378 GCAGAAGCCTCCAACAATGG 59.471 55.000 0.00 0.00 40.82 3.16
341 957 1.542492 AGCAGAAGCCTCCAACAATG 58.458 50.000 0.00 0.00 43.56 2.82
342 958 1.891150 CAAGCAGAAGCCTCCAACAAT 59.109 47.619 0.00 0.00 43.56 2.71
383 1016 1.303888 ATGGGCTTGGACTGCACTG 60.304 57.895 0.00 0.00 34.45 3.66
384 1017 1.303888 CATGGGCTTGGACTGCACT 60.304 57.895 0.00 0.00 34.45 4.40
385 1018 2.998279 GCATGGGCTTGGACTGCAC 61.998 63.158 0.00 0.00 36.96 4.57
386 1019 2.677524 GCATGGGCTTGGACTGCA 60.678 61.111 0.00 0.00 36.96 4.41
387 1020 3.455469 GGCATGGGCTTGGACTGC 61.455 66.667 0.00 0.00 40.87 4.40
392 1025 3.078196 TGCATGGCATGGGCTTGG 61.078 61.111 27.48 1.89 40.87 3.61
401 1034 0.394762 GGTTCAGGAGATGCATGGCA 60.395 55.000 2.46 0.00 44.86 4.92
404 1037 0.178767 TCGGGTTCAGGAGATGCATG 59.821 55.000 2.46 0.00 0.00 4.06
405 1038 0.911769 TTCGGGTTCAGGAGATGCAT 59.088 50.000 0.00 0.00 0.00 3.96
406 1039 0.250234 CTTCGGGTTCAGGAGATGCA 59.750 55.000 0.00 0.00 0.00 3.96
407 1040 0.462759 CCTTCGGGTTCAGGAGATGC 60.463 60.000 0.00 0.00 30.81 3.91
421 1054 8.844441 TGTTTTGTTATTTACTTTGACCTTCG 57.156 30.769 0.00 0.00 0.00 3.79
474 1112 0.770499 TTCATGTGTGGAGGGAAGCA 59.230 50.000 0.00 0.00 0.00 3.91
478 1116 4.320546 AAATGATTCATGTGTGGAGGGA 57.679 40.909 0.00 0.00 0.00 4.20
479 1117 6.528537 TTAAAATGATTCATGTGTGGAGGG 57.471 37.500 0.00 0.00 0.00 4.30
480 1118 8.090214 ACTTTTAAAATGATTCATGTGTGGAGG 58.910 33.333 0.09 0.00 0.00 4.30
589 1238 0.447801 GGCGATGTTGTTTGCGATCT 59.552 50.000 0.00 0.00 0.00 2.75
590 1239 0.167908 TGGCGATGTTGTTTGCGATC 59.832 50.000 0.00 0.00 0.00 3.69
591 1240 0.810648 ATGGCGATGTTGTTTGCGAT 59.189 45.000 0.00 0.00 0.00 4.58
592 1241 0.595588 AATGGCGATGTTGTTTGCGA 59.404 45.000 0.00 0.00 0.00 5.10
593 1242 1.386412 GAAATGGCGATGTTGTTTGCG 59.614 47.619 0.00 0.00 0.00 4.85
594 1243 2.402305 TGAAATGGCGATGTTGTTTGC 58.598 42.857 0.00 0.00 0.00 3.68
595 1244 2.409378 GCTGAAATGGCGATGTTGTTTG 59.591 45.455 0.00 0.00 0.00 2.93
596 1245 2.035704 TGCTGAAATGGCGATGTTGTTT 59.964 40.909 0.00 0.00 0.00 2.83
597 1246 1.612950 TGCTGAAATGGCGATGTTGTT 59.387 42.857 0.00 0.00 0.00 2.83
598 1247 1.200716 CTGCTGAAATGGCGATGTTGT 59.799 47.619 0.00 0.00 0.00 3.32
599 1248 1.469703 TCTGCTGAAATGGCGATGTTG 59.530 47.619 0.00 0.00 0.00 3.33
600 1249 1.825090 TCTGCTGAAATGGCGATGTT 58.175 45.000 0.00 0.00 0.00 2.71
601 1250 2.048444 ATCTGCTGAAATGGCGATGT 57.952 45.000 0.00 0.00 0.00 3.06
602 1251 2.727777 CAATCTGCTGAAATGGCGATG 58.272 47.619 0.00 0.00 0.00 3.84
603 1252 1.066605 GCAATCTGCTGAAATGGCGAT 59.933 47.619 0.00 0.00 40.96 4.58
604 1253 0.452987 GCAATCTGCTGAAATGGCGA 59.547 50.000 0.00 0.00 40.96 5.54
673 1326 3.369892 CCACTCTCCTGGTCTTGGTAATG 60.370 52.174 0.00 0.00 0.00 1.90
674 1327 2.840651 CCACTCTCCTGGTCTTGGTAAT 59.159 50.000 0.00 0.00 0.00 1.89
675 1328 2.158219 TCCACTCTCCTGGTCTTGGTAA 60.158 50.000 0.00 0.00 32.50 2.85
676 1329 1.431633 TCCACTCTCCTGGTCTTGGTA 59.568 52.381 0.00 0.00 32.50 3.25
682 1335 1.353091 AAAGGTCCACTCTCCTGGTC 58.647 55.000 0.00 0.00 33.97 4.02
722 1388 1.382009 GGGGTCCTCACTCCTCTCC 60.382 68.421 0.00 0.00 40.62 3.71
725 1391 2.781406 AGGGGGTCCTCACTCCTC 59.219 66.667 0.00 0.00 43.89 3.71
734 1400 0.906066 GAGAAACAGAGAGGGGGTCC 59.094 60.000 0.00 0.00 0.00 4.46
735 1401 1.945580 AGAGAAACAGAGAGGGGGTC 58.054 55.000 0.00 0.00 0.00 4.46
736 1402 2.655407 TCTAGAGAAACAGAGAGGGGGT 59.345 50.000 0.00 0.00 0.00 4.95
737 1403 3.295973 CTCTAGAGAAACAGAGAGGGGG 58.704 54.545 15.05 0.00 40.68 5.40
747 1413 5.993106 AAAAGTGTGTGCTCTAGAGAAAC 57.007 39.130 24.24 19.17 0.00 2.78
749 1415 5.428253 ACAAAAAGTGTGTGCTCTAGAGAA 58.572 37.500 24.24 10.74 39.72 2.87
758 1424 3.429085 CTCACTGACAAAAAGTGTGTGC 58.571 45.455 3.70 0.00 44.42 4.57
812 1515 2.738314 CAAAAGCAAAGCAATGGTAGGC 59.262 45.455 0.83 0.83 0.00 3.93
835 1544 2.003830 TCCTCCTCTCCTTCTCCTTCA 58.996 52.381 0.00 0.00 0.00 3.02
858 1567 1.398390 GATGCAAAGGTCGACATGTCC 59.602 52.381 20.03 7.12 0.00 4.02
903 1612 3.189287 GGACAATATCAATCGACATGGCC 59.811 47.826 0.00 0.00 0.00 5.36
911 1620 4.753610 AGCTGTCATGGACAATATCAATCG 59.246 41.667 0.33 0.00 42.26 3.34
915 1624 5.510349 GCTCTAGCTGTCATGGACAATATCA 60.510 44.000 0.00 0.00 42.26 2.15
919 1628 3.191078 GCTCTAGCTGTCATGGACAAT 57.809 47.619 0.00 0.00 42.26 2.71
920 1629 2.680312 GCTCTAGCTGTCATGGACAA 57.320 50.000 0.00 0.00 42.26 3.18
960 1678 1.148273 TCAGGTGAACCCAGTGTGC 59.852 57.895 0.00 0.00 36.42 4.57
961 1679 0.180171 TGTCAGGTGAACCCAGTGTG 59.820 55.000 0.00 0.00 36.42 3.82
962 1680 0.180406 GTGTCAGGTGAACCCAGTGT 59.820 55.000 0.00 0.00 36.42 3.55
963 1681 0.469917 AGTGTCAGGTGAACCCAGTG 59.530 55.000 0.00 0.00 36.42 3.66
964 1682 1.134098 CAAGTGTCAGGTGAACCCAGT 60.134 52.381 0.00 0.00 36.42 4.00
968 1707 0.947244 CTGCAAGTGTCAGGTGAACC 59.053 55.000 0.00 0.00 0.00 3.62
1022 1766 6.721318 TCCAAGTTCCAAGCAAATACTAGAT 58.279 36.000 0.00 0.00 0.00 1.98
1026 1770 4.021981 GCTTCCAAGTTCCAAGCAAATACT 60.022 41.667 9.53 0.00 41.87 2.12
1030 1774 2.101249 CAGCTTCCAAGTTCCAAGCAAA 59.899 45.455 14.83 0.00 44.24 3.68
1038 1782 1.609072 GGTCAACCAGCTTCCAAGTTC 59.391 52.381 0.00 0.00 35.64 3.01
1039 1783 1.064017 TGGTCAACCAGCTTCCAAGTT 60.064 47.619 0.00 0.00 42.01 2.66
1040 1784 0.550914 TGGTCAACCAGCTTCCAAGT 59.449 50.000 0.00 0.00 42.01 3.16
1041 1785 3.419793 TGGTCAACCAGCTTCCAAG 57.580 52.632 0.00 0.00 42.01 3.61
1085 1829 3.535962 CCTCCGAGAGCCTCCTGC 61.536 72.222 0.00 0.00 41.71 4.85
1086 1830 2.043450 ACCTCCGAGAGCCTCCTG 60.043 66.667 0.00 0.00 0.00 3.86
1320 2070 1.404035 GATTCCATACCAACAACGCCC 59.596 52.381 0.00 0.00 0.00 6.13
1322 2072 1.063469 CGGATTCCATACCAACAACGC 59.937 52.381 3.09 0.00 0.00 4.84
1323 2073 2.350498 GTCGGATTCCATACCAACAACG 59.650 50.000 3.09 0.00 0.00 4.10
1325 2075 2.623535 CGTCGGATTCCATACCAACAA 58.376 47.619 3.09 0.00 0.00 2.83
1329 2079 1.444250 GCCGTCGGATTCCATACCA 59.556 57.895 17.49 0.00 0.00 3.25
1331 2081 0.938168 GTCGCCGTCGGATTCCATAC 60.938 60.000 17.49 0.00 36.13 2.39
1334 2084 4.485834 CGTCGCCGTCGGATTCCA 62.486 66.667 17.49 0.00 36.13 3.53
1416 2166 3.387947 GTGGGGGACGACGACCAT 61.388 66.667 17.82 0.00 35.13 3.55
1451 2204 4.013728 AGTCAGAAGCAGAGTAGTGTAGG 58.986 47.826 0.00 0.00 0.00 3.18
1508 2261 9.574516 AAGGTGAATTATTTATGGGTATGACTC 57.425 33.333 0.00 0.00 0.00 3.36
1515 2268 7.456269 TGAAACCAAGGTGAATTATTTATGGGT 59.544 33.333 0.00 0.00 0.00 4.51
1520 2273 8.133024 AGCATGAAACCAAGGTGAATTATTTA 57.867 30.769 0.00 0.00 0.00 1.40
1566 2319 2.123640 CGTCCTCCTCCTCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
1567 2320 1.454295 GTCGTCCTCCTCCTCCTCC 60.454 68.421 0.00 0.00 0.00 4.30
1743 2503 1.524621 GCCGACATGGACATGGAGG 60.525 63.158 15.94 17.10 42.91 4.30
1753 2513 2.202797 CACTCCCTCGCCGACATG 60.203 66.667 0.00 0.00 0.00 3.21
1754 2514 3.461773 CCACTCCCTCGCCGACAT 61.462 66.667 0.00 0.00 0.00 3.06
1921 2685 6.910536 ATGGTAGAAATCTCGTTGATCAAC 57.089 37.500 25.68 25.68 37.92 3.18
1922 2686 7.824289 AGAAATGGTAGAAATCTCGTTGATCAA 59.176 33.333 3.38 3.38 33.57 2.57
1923 2687 7.278646 CAGAAATGGTAGAAATCTCGTTGATCA 59.721 37.037 0.00 0.00 33.57 2.92
1924 2688 7.254590 CCAGAAATGGTAGAAATCTCGTTGATC 60.255 40.741 0.00 0.00 33.57 2.92
1925 2689 6.540189 CCAGAAATGGTAGAAATCTCGTTGAT 59.460 38.462 0.00 0.00 36.89 2.57
1926 2690 5.874810 CCAGAAATGGTAGAAATCTCGTTGA 59.125 40.000 0.00 0.00 0.00 3.18
1989 2753 9.452287 GCTCCTAGCTATACTTAGTACAAGTAT 57.548 37.037 22.71 22.71 43.58 2.12
1991 2755 7.288560 TGCTCCTAGCTATACTTAGTACAAGT 58.711 38.462 13.01 13.01 42.97 3.16
1992 2756 7.662258 TCTGCTCCTAGCTATACTTAGTACAAG 59.338 40.741 0.00 0.00 42.97 3.16
2042 2808 1.527370 GATCCCCACTGCCCTGTAC 59.473 63.158 0.00 0.00 0.00 2.90
2056 2822 5.009010 AGTCATACATTTTTGCATCGGATCC 59.991 40.000 0.00 0.00 0.00 3.36
2057 2823 6.064846 AGTCATACATTTTTGCATCGGATC 57.935 37.500 0.00 0.00 0.00 3.36
2106 2874 8.834465 CAGTAGAAAATGTGAAATATCTCCTGG 58.166 37.037 0.00 0.00 0.00 4.45
2108 2876 8.049117 TGCAGTAGAAAATGTGAAATATCTCCT 58.951 33.333 0.00 0.00 0.00 3.69
2119 2887 4.573900 ACTCTCCTGCAGTAGAAAATGTG 58.426 43.478 13.81 1.20 0.00 3.21
2132 2900 3.126000 GCAACATGTCTAAACTCTCCTGC 59.874 47.826 0.00 0.00 0.00 4.85
2135 2903 3.686726 CCAGCAACATGTCTAAACTCTCC 59.313 47.826 0.00 0.00 0.00 3.71
2136 2904 4.153117 CACCAGCAACATGTCTAAACTCTC 59.847 45.833 0.00 0.00 0.00 3.20
2185 2953 4.497473 TCGGTGAATTGGTGATGTTTTC 57.503 40.909 0.00 0.00 0.00 2.29
2190 2958 5.022335 CGATAATCGGTGAATTGGTGATG 57.978 43.478 0.00 0.00 36.00 3.07
2205 2973 1.071605 GTGCTCATCCGCCGATAATC 58.928 55.000 0.00 0.00 0.00 1.75
2206 2974 0.681733 AGTGCTCATCCGCCGATAAT 59.318 50.000 0.00 0.00 0.00 1.28
2207 2975 1.324383 TAGTGCTCATCCGCCGATAA 58.676 50.000 0.00 0.00 0.00 1.75
2209 2977 0.032678 CTTAGTGCTCATCCGCCGAT 59.967 55.000 0.00 0.00 0.00 4.18
2211 2979 0.032678 ATCTTAGTGCTCATCCGCCG 59.967 55.000 0.00 0.00 0.00 6.46
2212 2980 2.246719 AATCTTAGTGCTCATCCGCC 57.753 50.000 0.00 0.00 0.00 6.13
2213 2981 4.865365 GGTATAATCTTAGTGCTCATCCGC 59.135 45.833 0.00 0.00 0.00 5.54
2214 2982 6.274157 AGGTATAATCTTAGTGCTCATCCG 57.726 41.667 0.00 0.00 0.00 4.18
2220 2988 9.495572 GCAAAGATAAGGTATAATCTTAGTGCT 57.504 33.333 11.64 4.28 40.66 4.40
2221 2989 9.495572 AGCAAAGATAAGGTATAATCTTAGTGC 57.504 33.333 11.22 11.22 41.73 4.40
2274 3067 4.332819 GGGTCTGATTAATCGTTTGTCAGG 59.667 45.833 10.80 5.71 37.49 3.86
2283 3076 3.141398 CATGGGTGGGTCTGATTAATCG 58.859 50.000 10.80 6.05 0.00 3.34
2303 3116 1.555533 GTTTTGGGGGTTTTGACCACA 59.444 47.619 0.00 0.00 40.31 4.17
2304 3117 1.555533 TGTTTTGGGGGTTTTGACCAC 59.444 47.619 0.00 0.00 33.20 4.16
2314 3127 1.552799 GGGAAGCCATGTTTTGGGGG 61.553 60.000 0.00 0.00 46.55 5.40
2315 3128 1.552799 GGGGAAGCCATGTTTTGGGG 61.553 60.000 0.00 0.00 46.55 4.96
2325 3138 2.759114 CTGCTGAAGGGGAAGCCA 59.241 61.111 0.00 0.00 38.71 4.75
2341 3154 0.833287 AGTGTGATATGCGGAAGGCT 59.167 50.000 0.00 0.00 44.05 4.58
2342 3155 1.599542 GAAGTGTGATATGCGGAAGGC 59.400 52.381 0.00 0.00 43.96 4.35
2343 3156 2.905075 TGAAGTGTGATATGCGGAAGG 58.095 47.619 0.00 0.00 0.00 3.46
2344 3157 3.496130 GGATGAAGTGTGATATGCGGAAG 59.504 47.826 0.00 0.00 0.00 3.46
2345 3158 3.466836 GGATGAAGTGTGATATGCGGAA 58.533 45.455 0.00 0.00 0.00 4.30
2346 3159 2.224281 GGGATGAAGTGTGATATGCGGA 60.224 50.000 0.00 0.00 0.00 5.54
2347 3160 2.146342 GGGATGAAGTGTGATATGCGG 58.854 52.381 0.00 0.00 0.00 5.69
2348 3161 2.146342 GGGGATGAAGTGTGATATGCG 58.854 52.381 0.00 0.00 0.00 4.73
2352 3165 6.823286 TTGAATAGGGGATGAAGTGTGATA 57.177 37.500 0.00 0.00 0.00 2.15
2366 3179 2.158813 ACACAGGCCGTATTGAATAGGG 60.159 50.000 17.26 17.26 42.28 3.53
2374 3187 4.748277 ATACTACAACACAGGCCGTATT 57.252 40.909 0.00 0.00 0.00 1.89
2378 3191 2.671396 GACAATACTACAACACAGGCCG 59.329 50.000 0.00 0.00 0.00 6.13
2402 3215 9.528018 AACAACGAGTCAATGACAAATAAAAAT 57.472 25.926 16.38 0.00 34.60 1.82
2403 3216 8.918961 AACAACGAGTCAATGACAAATAAAAA 57.081 26.923 16.38 0.00 34.60 1.94
2404 3217 8.802856 CAAACAACGAGTCAATGACAAATAAAA 58.197 29.630 16.38 0.00 34.60 1.52
2408 3221 6.130298 TCAAACAACGAGTCAATGACAAAT 57.870 33.333 16.38 0.00 34.60 2.32
2412 3225 6.831769 ACATATCAAACAACGAGTCAATGAC 58.168 36.000 5.02 5.02 0.00 3.06
2475 3326 7.360946 GCGACCATTATTGTGTTCTAAGTCTTT 60.361 37.037 0.00 0.00 0.00 2.52
2478 3329 5.581085 AGCGACCATTATTGTGTTCTAAGTC 59.419 40.000 0.00 0.00 0.00 3.01
2479 3330 5.488341 AGCGACCATTATTGTGTTCTAAGT 58.512 37.500 0.00 0.00 0.00 2.24
2480 3331 6.422776 AAGCGACCATTATTGTGTTCTAAG 57.577 37.500 0.00 0.00 0.00 2.18
2481 3332 5.353123 GGAAGCGACCATTATTGTGTTCTAA 59.647 40.000 0.00 0.00 0.00 2.10
2483 3334 3.689649 GGAAGCGACCATTATTGTGTTCT 59.310 43.478 0.00 0.00 0.00 3.01
2497 3349 4.794169 TGAAAGCTAAAAATGGAAGCGAC 58.206 39.130 0.00 0.00 41.19 5.19
2499 3351 4.618489 CACTGAAAGCTAAAAATGGAAGCG 59.382 41.667 0.00 0.00 41.19 4.68
2505 3357 5.215160 ACGAAGCACTGAAAGCTAAAAATG 58.785 37.500 0.00 0.00 42.53 2.32
2545 3398 7.893236 CGGTGATTAATTGATTTATCGATCGAC 59.107 37.037 22.06 7.90 30.66 4.20
2547 3400 7.949186 TCGGTGATTAATTGATTTATCGATCG 58.051 34.615 9.36 9.36 30.66 3.69
2559 3414 9.450807 GATTAACCAGAAATCGGTGATTAATTG 57.549 33.333 0.00 0.00 36.67 2.32
2561 3416 8.980481 AGATTAACCAGAAATCGGTGATTAAT 57.020 30.769 0.00 0.00 38.20 1.40
2563 3418 7.792032 AGAGATTAACCAGAAATCGGTGATTA 58.208 34.615 0.00 0.00 38.20 1.75
2565 3420 6.240549 AGAGATTAACCAGAAATCGGTGAT 57.759 37.500 0.00 0.00 38.20 3.06
2567 3422 8.438676 AATAAGAGATTAACCAGAAATCGGTG 57.561 34.615 0.00 0.00 38.20 4.94
2577 3432 8.190122 TCGTTAGCGTTAATAAGAGATTAACCA 58.810 33.333 12.33 0.00 39.85 3.67
2592 3447 6.902341 AGGATATCGTTTATCGTTAGCGTTA 58.098 36.000 0.00 0.00 40.80 3.18
2593 3448 5.766222 AGGATATCGTTTATCGTTAGCGTT 58.234 37.500 0.00 0.00 40.80 4.84
2594 3449 5.049198 TGAGGATATCGTTTATCGTTAGCGT 60.049 40.000 0.00 0.00 40.80 5.07
2596 3451 7.027760 TGATGAGGATATCGTTTATCGTTAGC 58.972 38.462 0.00 5.13 40.80 3.09
2597 3452 9.574458 AATGATGAGGATATCGTTTATCGTTAG 57.426 33.333 19.06 0.00 40.80 2.34
2599 3454 7.148573 GCAATGATGAGGATATCGTTTATCGTT 60.149 37.037 16.88 16.88 40.80 3.85
2601 3456 6.533012 AGCAATGATGAGGATATCGTTTATCG 59.467 38.462 0.00 0.00 34.84 2.92
2602 3457 7.840342 AGCAATGATGAGGATATCGTTTATC 57.160 36.000 12.81 12.81 34.84 1.75
2603 3458 9.725019 TTAAGCAATGATGAGGATATCGTTTAT 57.275 29.630 0.00 0.00 34.84 1.40
2604 3459 9.208022 CTTAAGCAATGATGAGGATATCGTTTA 57.792 33.333 0.00 0.00 34.84 2.01
2608 3474 8.815189 CATACTTAAGCAATGATGAGGATATCG 58.185 37.037 11.29 0.00 0.00 2.92
2619 3485 9.844790 CAATTTCAGTTCATACTTAAGCAATGA 57.155 29.630 14.18 14.18 30.26 2.57
2677 3545 1.916181 AGTACATTTGCTAGTGGCCCT 59.084 47.619 0.00 0.00 40.92 5.19
2697 3565 7.055667 ACAGAGTTCAGAAATCAGTCTTGTA 57.944 36.000 12.96 0.00 0.00 2.41
2712 3580 2.167487 TGCCATGCGTATACAGAGTTCA 59.833 45.455 3.32 0.00 0.00 3.18
2720 3588 6.128035 TGGATGATATTTTGCCATGCGTATAC 60.128 38.462 0.00 0.00 32.36 1.47
2731 3599 5.105797 TGAGTGGTGTTGGATGATATTTTGC 60.106 40.000 0.00 0.00 0.00 3.68
2744 3612 3.498397 GTCCAATGTACTGAGTGGTGTTG 59.502 47.826 0.00 0.00 32.68 3.33
2746 3614 2.703536 TGTCCAATGTACTGAGTGGTGT 59.296 45.455 0.00 0.00 32.68 4.16
2793 3661 3.988976 TCCTCTGAGTTCCCAATCTTG 57.011 47.619 3.66 0.00 0.00 3.02
2794 3662 4.171234 TCTTCCTCTGAGTTCCCAATCTT 58.829 43.478 3.66 0.00 0.00 2.40
2796 3664 4.257731 GTTCTTCCTCTGAGTTCCCAATC 58.742 47.826 3.66 0.00 0.00 2.67
2799 3667 1.618837 CGTTCTTCCTCTGAGTTCCCA 59.381 52.381 3.66 0.00 0.00 4.37
2800 3668 1.893801 TCGTTCTTCCTCTGAGTTCCC 59.106 52.381 3.66 0.00 0.00 3.97
2802 3670 3.644884 TGTCGTTCTTCCTCTGAGTTC 57.355 47.619 3.66 0.00 0.00 3.01
2803 3671 4.120589 GTTTGTCGTTCTTCCTCTGAGTT 58.879 43.478 3.66 0.00 0.00 3.01
2804 3672 3.492829 GGTTTGTCGTTCTTCCTCTGAGT 60.493 47.826 3.66 0.00 0.00 3.41
2805 3673 3.060602 GGTTTGTCGTTCTTCCTCTGAG 58.939 50.000 0.00 0.00 0.00 3.35
2806 3674 2.698797 AGGTTTGTCGTTCTTCCTCTGA 59.301 45.455 0.00 0.00 0.00 3.27
2807 3675 3.113260 AGGTTTGTCGTTCTTCCTCTG 57.887 47.619 0.00 0.00 0.00 3.35
2813 3681 2.228138 TGCGTAGGTTTGTCGTTCTT 57.772 45.000 0.00 0.00 0.00 2.52
2822 3690 0.390603 TAGCGTGCATGCGTAGGTTT 60.391 50.000 24.51 8.46 40.67 3.27
2825 3693 2.576893 CGTAGCGTGCATGCGTAGG 61.577 63.158 24.51 17.25 40.67 3.18
2827 3695 1.009903 AAACGTAGCGTGCATGCGTA 61.010 50.000 24.51 14.34 39.99 4.42
2830 3698 2.222931 TGAATAAACGTAGCGTGCATGC 60.223 45.455 23.58 23.58 39.99 4.06
2833 3701 3.433957 ACATTGAATAAACGTAGCGTGCA 59.566 39.130 0.00 0.00 39.99 4.57
2834 3702 3.778718 CACATTGAATAAACGTAGCGTGC 59.221 43.478 0.00 0.00 39.99 5.34
2840 3708 6.035220 GGATGTCGTCACATTGAATAAACGTA 59.965 38.462 0.00 0.00 43.79 3.57
2841 3709 5.163893 GGATGTCGTCACATTGAATAAACGT 60.164 40.000 0.00 0.00 43.79 3.99
2842 3710 5.063438 AGGATGTCGTCACATTGAATAAACG 59.937 40.000 0.00 0.00 43.79 3.60
2863 3737 1.989508 TCGGCCAGAGCAATGAGGA 60.990 57.895 2.24 0.00 42.56 3.71
2866 3740 1.078918 CAGTCGGCCAGAGCAATGA 60.079 57.895 2.24 0.00 42.56 2.57
2884 3758 1.310904 TTGTTACGTTTGGTGGAGCC 58.689 50.000 0.00 0.00 37.90 4.70
2885 3759 3.423996 TTTTGTTACGTTTGGTGGAGC 57.576 42.857 0.00 0.00 0.00 4.70
2886 3760 4.106909 GGTTTTTGTTACGTTTGGTGGAG 58.893 43.478 0.00 0.00 0.00 3.86
2887 3761 3.119209 GGGTTTTTGTTACGTTTGGTGGA 60.119 43.478 0.00 0.00 0.00 4.02
2888 3762 3.119065 AGGGTTTTTGTTACGTTTGGTGG 60.119 43.478 0.00 0.00 0.00 4.61
2889 3763 4.112716 AGGGTTTTTGTTACGTTTGGTG 57.887 40.909 0.00 0.00 0.00 4.17
2890 3764 5.911378 TTAGGGTTTTTGTTACGTTTGGT 57.089 34.783 0.00 0.00 0.00 3.67
2891 3765 8.917655 CATAATTAGGGTTTTTGTTACGTTTGG 58.082 33.333 0.00 0.00 0.00 3.28
2892 3766 9.465985 ACATAATTAGGGTTTTTGTTACGTTTG 57.534 29.630 0.00 0.00 0.00 2.93
2893 3767 9.465985 CACATAATTAGGGTTTTTGTTACGTTT 57.534 29.630 0.00 0.00 0.00 3.60
2922 3796 5.696724 ACACCTTCAGTCTCTTTTCGTAATG 59.303 40.000 0.00 0.00 0.00 1.90
2924 3798 5.047847 CACACCTTCAGTCTCTTTTCGTAA 58.952 41.667 0.00 0.00 0.00 3.18
2927 3801 3.717707 TCACACCTTCAGTCTCTTTTCG 58.282 45.455 0.00 0.00 0.00 3.46
2935 3809 6.318900 CCCCTTTATTATTCACACCTTCAGTC 59.681 42.308 0.00 0.00 0.00 3.51
2937 3811 5.594317 CCCCCTTTATTATTCACACCTTCAG 59.406 44.000 0.00 0.00 0.00 3.02
2938 3812 5.515106 CCCCCTTTATTATTCACACCTTCA 58.485 41.667 0.00 0.00 0.00 3.02
2940 3814 4.264623 TGCCCCCTTTATTATTCACACCTT 60.265 41.667 0.00 0.00 0.00 3.50
2946 3820 4.726825 AGACTCTGCCCCCTTTATTATTCA 59.273 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.