>input_sequence_63903
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----------------------------------------------------------C-----CACACCACTCTGCTCT
TCTGCATCTAGTATTTGCTTGGAACTTGGAAGCTGGTTGACCACAGCCGCCGTGGATGGCCGGCGGCGGCAGGAGGCTCT
CGGAGGTGCTGCGGGAGCAGCAGGAGCCGT---TCCTCCTTCACGGAGAGCCCTGCTGCTCC---GTCGCCGACGAGGGA
GCCAGGGCTTCGTGGGGCCGGGCCGTGCGGAGGGCGCTGCCGCGGTGGCGGTGGGACGGCCTCGCCGCCGGATGCTTCCC
CTGCGCCACCCGCTGCAAGCGCGAGAGCTTCCGCCCGCTGCCGCGCGCCGGCCACGCGCGCTGCGACGAGGGCGTTGTTG
GTATGGAATCCGACGGCGACGACGGCGCGAGGCGGCTCAGCCCGGTGTCCGTCCTGGACGTGCTGCGGTGCTCCGACGAC
GAGGAATG---GTCGTCGTCCCCCACGCTCAGCGACTGTAAGCCCTACACTACTCTGCTTCTGACTTCACCGTTCCAAGG
AGCATTCTCCTCTGTCAGCAGAGTCATACCCATAAATAATTCACCTTGGTTTCATGCTCTGCTTCTTGATAAATACAGGG
GAGGA-GGAGGAGGACGACGACGACAGGCCATCGTCGACGCCAG---GGAGCTCGCCGCCACC---CGACCCGCTCACCG
ACGAGAAGTCGGAGGAGGAGTGGAGGAAGGTGGTTTCGTCCTGGGAGCGGATCGCGGGGGACATCGCAAGAGTCCCGGCG
CTTGCGGAGCTGGACCTGTCGACCTCCATGTCCATGTCGGCGAGGGAGTGGCACGGGGAGGCGGAGGCCGAGCGGGTGGG
CGCGAGCGTGGAGGCCATGATCTTCGAGGACATGAGCGCGGAGGCCGTGCGCGACATGG----TCGAGCTGTAGCGAATC
GGAGTGCTCCTTGTCCAAGCTAGACTCTGCAGCTGGCTGAGTGAGTTGATCAACGAGATTTCTACCATTTCTGGGTTCAG
TTGGTATAAAGAGTACTCTACGTA--------------------------------------------------------
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>chr5D_1_TraesCS5D01G016300
CCGGTTTGGCTTCCTCTCGACCTCCCCTACCTATTCCTCTCTGCCAGCGGAGCAGAGGGACATGCAGTGCAGAGCAAGGA
CTTTTTACTGCCACAAACCTCTGTTACTCACTGTGACACAGAGGCTGCATCGATGCGTGCATGATTAAAACATGGCTTGA
AGCTGATTGTCTGGACGGTGCATGCATGCATGTACGTC---TGATAACCTCAGCGCTGGAAAGGGTGCGTGCAGTGCAGT
CCGGTGCCATA-------------CATGGAGCCCATCCGCTGCA--------------TGAGTGAGCGAGGGAGTGTGAA
TATGCTTGACGATTTGACAAGAGTT-------------------------------------------------------
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--------------------------------------------------GCTAGCTCCTGTGGCTATGCATTTACCA--
---------------TTGTTGGAGGCTTCTGCTTGTCCCTGTCTGGCTGTCTGTGCAGTGCAGTCCAAGCCCATGCCATG
CATCTCCTGAACCCGAAGGTCAAAGTAAATAACAAAACAGATGCCTGAA-----TCCATGGCGGCCTTGCTTGCTTCCCT
CCACACATGA---ATCATTTTAAAAGTGCCAGCTTGCCACCCTTTGAGCAAACAACATCGCCATCAGATCAAAAACCTCC
CTTTGTTGTTTTATTTACC--------ATCCATCTTCAGATCGCAAACAACATCGCCATTTCAGCAGATTGCACCACGC-
---ATGACTCCTCCACCTTTCCACCACTCCTCAGCGACCACCTACCATTACCAAGACCAGGAGAGTG-------------
GACCTTTTTTTACTGTCCACAACAGGAGGAGAGGAGTGAGGACCCCCTCTCTGTTTCTCTAGAGCACACACTTTTT----
-------------------------------GTCAGTGAGGCCCCTGCCACAGT--GTAATTGTAGCAGCAGTGGCCTAC
CATTGCTTTGCTTTT------GGTGAAGGAGAAGGAGAGGAGGAGGGGACATGTCGACCTTTGCATCAGGATCAGTCGCC
GTCCACAGCCCGGCCATGTCGATTGATATT---------GTCCATGACAGCTAGAGCTCAGCCGCTAGAAGTTCAGAGCA
CA---------------------CTGGGTTCACCTGACACTTGCAGTAGCACACAGTCC-----CACACCACTCTGCTCT
TCTGCATCTAGTATTTGCTTGGAACTTGGAAGCTGGTTGACCACAGCCGCCGTGGATGGCCGGCGGCGGCAGGAGGCTCT
CGGAGGTGCTGCGGGAGCAGCAGGAGCCGT---TCCTCCTTCACGGAGAGCCCTGCTGCTCC---GTCGCCGACGAGGGA
GCCAGGGCTTCGTGGGGCCGGGCCGTGCGGAGGGCGCTGCCGCGGTGGCGGTGGGACGGCCTCGCCGCCGGATGCTTCCC
CTGCGCCACCCGCTGCAAGCGCGAGAGCTTCCGCCCGCTGCCGCGCGCCGGCCACGCGCGCTGCGACGAGGGCGTTGTTG
GTATGGAATCCGACGGCGACGACGGCGCGAGGCGGCTCAGCCCGGTGTCCGTCCTGGACGTGCTGCGGTGCTCCGACGAC
GAGGAATG---GTCGTCGTCCCCCACGCTCAGCGACTGTAAGCCCTACACTACTCTGCTTCTGACTTCACCGTTCCAAGG
AGCATTCTCCTCTGTCAGCAGAGTCATACCCATAAATAATTCACCTTGGTTTCATGCTCTGCTTCTTGATAAATACAGGG
GAGGA-GGAGGAGGACGACGACGACAGGCCATCGTCGACGCCAG---GGAGCTCGCCGCCACC---CGACCCGCTCACCG
ACGAGAAGTCGGAGGAGGAGTGGAGGAAGGTGGTTTCGTCCTGGGAGCGGATCGCGGGGGACATCGCAAGAGTCCCGGCG
CTTGCGGAGCTGGACCTGTCGACCTCCATGTCCATGTCGGCGAGGGAGTGGCACGGGGAGGCGGAGGCCGAGCGGGTGGG
CGCGAGCGTGGAGGCCATGATCTTCGAGGACATGAGCGCGGAGGCCGTGCGCGACATGG----TCGAGCTGTAGCGAATC
GGAGTGCTCCTTGTCCAAGCTAGACTCTGCAGCTGGCTGAGTGAGTTGATCAACGAGATTTCTACCATTTCTGGGTTCAG
TTGGTATAAAGAGTACTCTACGTAGTAGTATAATACT--TGTACTAAGTATAGCTAGGAGCAGACTCTGGTTGCAGTTGC
AGTTGTAGTACAGGGCAGTGGGGATCCGATGCAAAAATGTAT--GACTCGAAGAAGAAAAAAAAAGAAAAATCCCAGGAG
ATATTTCACATTTTCTACTGCAGGAGAGTTTAGACATGTTGCTGGTGCTGGAGATGCTTTACAAGCAATGTTGAAAACAT
CACCAATTCACCGATTATCGGCGGATGAG-------------------------CACTAAGATTATACCTTATCTTTGCT
ATTTATTATTTAAGCCGATTTATCGCCCTGACAAACGATTAATCAGACCC--------------------ACCCATGTGG
TCAAAACCCCCAAAACATGGCTTCCCCTTCAGCAGCCTTCCGCATATCACACTTCATCCCCTATTCAATACGGCCTGTGT
TGTAGTATTGTCCTATTTTTATTTGTCATTGACTCGTTGTTTGATATGTAATATGT------------------------
--------------TAGTTATGTATTGATATAGTGTTGCACTATTAAAGACTTA-GAACACAATAATGGTCGCTTCCATT
TTTAGCTTTCAGTGCTTCGTACTAA-AATTATTAATAGTCGATCG--ATAAATCAATTAATCACCGATTTCTGGTTAATC
TCTTATTAACGCTAACGAT-----------AAACGATATCCTCATCATTGCTT--AAGTATGAACTGAAATTGGTTAATG
TCCTACACGCACTAGTGCACCACCAGGGCCACTAGCAAATGTACTACAAGACTGATTTCTGAACTCTGTATACGCATGGC
AAAATATCATCCAACACCACTCAGTACATTGGACATTGTTTAAGAATTACAACTGGATTACAAGATTGGGAACTCAGAGG
AAGAACGACAAACCTACGCATGCACGCTAC------GTTTATTCAATGTGACGACATCCTCATTGCTCTGGCCGACTGGC
TCCACCAAACGTAACAAAAACCCTAATTATGTGAACATTACGAAAAGAGACTGAAGGTGTGAATAATAAAGGGGGCAGAG
TCTCTGCCTTCACC
>chr5A_65
CAGTGGAGCAGAG----------------------------------------------------------------GGA
CTTTTTACTGCTAAAAACCTCTGTTACTCACTGTGAAACATGCA-------------TGCATGATTAAAACATGGCTTGA
AGCTGATTCTCTGGACG----ATGCATGCACGTACCACCTTTGATAATCTCAGCGCTGGAAAGGGTGCATGCATGCATGC
TTGAGTCTGCATGCAGTGCAGGGCCATGGAGCCCATCCGCTGCAGGCCTTTCGCTGCATGAGTGAGCGAGGGAGTGTGAA
TAGGCATGACGATTTGAGTGGAGTGAAGTGATTAGGATTTCGTCCGGCGAACCAGCGAGGGCCGGGTTTGACGTGTCGGA
GACGTTCAGAAGTTTTCATATGCGTCTCATATTTAGGTTGGATATAAAGAGTGCACGTCAGACCGGACGTTTGAGGCCAT
TTGAGTCGCCCGTTTCGATCGAAATTTTGTGACCGGACAGGACGGTTACCGGACCGTCCGCCCTACCGTTTAAGCCGAGT
TTGATGTGCTTGGTTGTAGATGTAGTAAGGGCATGTACAATGATGCTATCTTAGGAGTGCCACGTAGGATAAATAATGAA
GTGGAGGAGAGAGAACTCATAAGTCTTCTCTTATTTAAAATAAAACAAGAGATGATCTCTTAGCACAATATGTCTCACCA
TATTTTTAGGAATTGCTAGTTATTGAAGATAAGGCTAAGAGATGACCCATTATAGACATTTTTCTTTGTCATCTCCAAAT
TACATGCAAAAATTAAGATAAAACTATCTTATCAACCATTGTACATGCCCTAAGCTACCAACAAAAACTGCATTTTGTTT
TAGACAATTAGCTGCAAGAGCCTACAGACAAACGTACTTATCGTACACCAGCTAGCTCCTGTAGCTCTGCAATTTTTCCT
TCATTCACCTCACCTTTGTTGGAGGCTTCTGCTTGTCCCTGTCTGGCTGTCTGTG-----CAGTGCAAGCCCAGGCATCT
CCGAGCCTGAACCTGAAGGTCAAAGTAAATAGCAAAACACATGCCTGAA-----TCCATGGCGGCCTTGCTCGCTCATCT
TCACACATGAATCA---TTTTAAAAGTGCCACCTTGCCACCCTTTGAGCAAACAACATCGCCATCAGATAAAAAACCTTC
CTTTGTTGTTTTATTTACC--------ATCCATCTTCC---------------CGCCATTTCAGCAGATTGCACCACGCG
CGCATGACTCCTCCACCTTTCCACCACTCCTCAGCGACCACCT------ACCAATACCAAGAGAGTG-------------
GACCTTC-TTTACTGTCCACAACAGGAAGAAAGGAGAGGA---CCCCTCTCTCTGTCTCTAGAACACACACTTTTT----
-------------------------------GTCAGTGAGCCCCCTGCCACAGT--GTAATTGTAGCAGTGGTGCCCTAC
CATTGCTTTGCTTTTCAGC------AAGGAGAAGGAGAGGAGGAGGAGACATGTCGACCTTTGCATCAGGATCAGTCGCC
GTCCACAGCCCCGCCATGTTGATCGATTGTGCTT--------CATGAGAGGTAGAGCTCGGCCGCTAGAAGTTCG-----
--------------------------------CCTGACGCTCGCAGTAGCACAGAGTCC-----CACACCACTCTGCTCT
TCGGCTTCTGGTAGTTGCTTG-------GAAGCTGGTTGACCAGAGCCGCCGTGGATGGCCGGCGGCGTTAGGAGGCTCT
CGGAGGTGCTGCGGGAGCAGCAGGAGCCGT---TCCTCCTTCAGGGAGAGCCCTGCTGCTCC---GTCAACAACAAGGGC
GTCAGGGCTTCGTGGGGCCGGGCCGTGAGGAGGGCGGTGCCGCGGTGGCGGTCTGACGGCCTCGCCGTCGGCTGCTTCCC
CTGCGCCGCCCGC---AAGCGCGAGAGCTTCCGCCCGCTGTCGCGCGCCGGCCACGCGC---------------------
------------ACTGCGACGACGACGCGAGGCGGCTCAGCCCGGTGTCCGTCCTGGACGTGCTGCGGTGCTCCGACGAC
GAGGAGGAAGCGTCGTCGTCGCCCACGCTCAGCGACTGTAAGCACTACACTGGTCTGCTTCTGGCTTCACGGTTCCAAGG
AGAATTCTCCTCTGTCAGCACAGTCATGCCCACAAATAATTCACCTTCGTTTCATGCTCTGCTTCTTGATAAATGATAAA
TACAGGGGAGGAGGAGGAGGACGACAAGCCATCGTCGACGGCAG---GCAGCTCGCCGCCACC---CGACAAGAAG----
--GAGGAGTCGGAGGAGGAGTGGAGGAAGGTGGTCTCGTCGTGGGAGAGGGTCGCGGGGGACATCGCAAGGGTCCCCGTG
CTTGCGCAGCTGGACCTGTTGAGCTCCATGTCGGCGAGGGAGTGGGAGTGGCACGGGGAGGCGGAGGCAGAGCGGGTGGG
CGCGAGCGTGGAGGCCATGATCTTCGAGGAGATGAGCGCGGATGCCGTGCGCGACATGG----TCGACCTGTAGCGGATC
GGAGTGCTCCTTGTCCAAGCGAGACTCTGCAGCTGGCTGAGTGACGGACGATGCTTCGGTGCCTTAAGCCACCTATCTTT
GATC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTACATTTTCTACTAAA-TACAGTTTAGACATGTTAGATGCT--------------CAAGCAATGTTCAAAATAT
CATCCGATTCACTGATGTACCGGCCGATTCATCACTTATAGATGGGTGGGTGGCCATTAAGATTATATCTTATCTTTGCT
ATTTATTATTTGAGCCGATTTATCGCTCTGACAAATGATTAATCAGAAATCTAGCGATTAATAGTGCTAGACCCAGATGG
TCAAAA--CCCAAAACAAGGCTTCCCCTTCAGCCT------GCACATCACACTTCATCTCCTATTCGATAAGGCATGTGT
TGTAGTATTGTCCTGC-TTTGTTTATCATTGACTCGTTGTTTGATATGTAATATGTACTTCCTCTGTACCACAATACTTG
TGGTACAGAGGGAGTAGTTATGTATTGACATGGTGTTGCACTATTTAAAGGCTTTGAACACAATAATGTTTGCTTCTATT
TTTAGCTTTCAGTGCTTGGAACCTGGAATTATTAATATTTGACTGATATAAATGATTAATTGACTGATTTCCGATTAATC
TCTTATCCTCAATCAACCGAAACGCTAAAAAAATGATATCCTCACCATTGCTTGCAAGTATGAACTGAAATTGGTTAATG
TCCTACACGCACTAGTGCACCACCGGGGCCACTAGCAAATGTACCACAAGACTGATTTCAGAACTCTATATACGCATGAC
AAAATATCATCAAGCACCACTCAGTACATTGGACACAGTTTAAGAATTACAACTGGATTATTAAATGTG------AGAGG
GAGAACGACTAATCAACCCACACACGCGTAGGCTGTGTTTATTCAATGTGACGACAGCCACACTACTCTGGCTCCACC--
-------AACGTAACAAAAACCCTAATTATGTGAAAACTATGAAAAGAAATGGGAGGTGCGAATAATAAGCATGGCAGAG
GTCGTGCCTTCACC
>chr5B_412
CTTCTGT-------------------------------------------------------------------------
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---------AACCTCAAGGTCAAAGTAAATAAGAAAACAGATGCCTGAATTGAATCCATGGCGGCCTTGCTCGCTCATCT
CCGCACATGAATCATCATTTTAAAAGCACCAGCTTGCCACCCCTTGAGCAAACAACATCGCCATCAGATCAAAAATCTCA
CCTTGTTTCTTCCTAGCAGTGTTTTTTATCCATCTTCC---------------CGCCATTTCAGCGGATTGCACCACGCA
CGCATGACTCCTCCACCTTTCCACCACTCCTCGGCGACCACCTACACC------TACCAAGAGAAGAGAGTCAGTGGGAC
GACCTTC-TTTCCTGTTCACAACAGG---------------------TCTCTCTGTCTCTAGAACACACACTTTTTTTTA
CCTGCAAAAAAAAATAGAACACACACTTTTTGTCAGTGAGGCCCCTTACGACAGTGGTAATTACAGCGGCAGTGCCCTAC
CACTGCTTTGCTTTTCAGGAAGGAGAGGGAGAAGGAGAGGAGGAGGAGACATGTCGAGCTTTGCATCAGGATCAGTCGCC
GTCCACAGCCCCGCCATGCATGTCGATGGATTGTCCATAGTCCGTGAGAGCTAGTGCTCAGCCGCTACAAGTTCAGAAGC
GCACCTGACAGAGGTGAGCTGAGCTGAGTTCTCCTGGCACTTGCAGGAGCTAGCTAGCGTTGCACGCACCTCTCTGTCTC
TATTCTGTTTCTACCTGCTTCC---------------------------------ATGGTCGGCGGC---AGGAGGCTCT
CGGAGCTGCTCCGGGAGCAGCAGGAGCCGTTCCTCCTCCTTCACGGAGAGCCCTGCTGCTCCTCCGTCCAAGACAGGGGC
GCCAGGGCTTCTTGGCGTAGGGCCATGAGGAGGGCGCTGCCGCGGTGGCGCTGGGCCGGCCTTGCCGCCGGATGCTTCCC
CTGCACCGCCCGCCGCAAGCGCGAGAGCTTCCGCCCTCTGCCGCGCGCGGGCCACGCGTGCTGCAACGACGATGCTGTGG
CTACGGAATCCGACGGCGGCGACGGCGCGAGGCGGCTCAGCCCGGTGTCCGTCCTGGACGTGCTGCGCTGCTCCGACGAG
GAGGAGGAGGCGTCGTCGTCGCCCACGCTTAGCCACTGTAAGCACTACACTACTCTGCTTCTGACGTCACCGTTCCAAGG
AGAATTCTCCTCTG------------------------------CTTGGTTTCATGCTCTGCTTCTTGATAAATACAGCA
GGGGA-GGAGGAAGACAACGACGAGAAGCCATCGTGGACGCCAGCTGGGAGCTCGCCGCCACCACCCGACCCGCTCACCG
ACGAGA------AGGAGGAGTGGAGGAAGGTGGTTTCGTCGTGGGAGCGGATCGCGGGGGACATCGCAAGGGTCCCGGCG
CTTGCGGAGCTGGACCTTTCAAGCTCCATGTCGGCGAGGGAGTGGGAGTGGCACGGGGAGTCGGAGGCAGAGCGGGTGGG
CGCGAGCGTGGAGGCCATCATCTTCGAGGAGATGAGCGCGGAGGCCGTGCGCGACATGGTCGATCGAGCTATAGCGAGTC
GGAGCGCTCCTAGTCCAAGCTAG-CTTTGCAACTGGCT------------CAACGAGATTTCTACCATTTCTGGGTTCAG
TTGGTATAAACAGTACTCTACGTAGTATAATACTTGTAGTGTACTAAGTATAGCTAGGAGCAGACTCTGGTTGCAGTTGC
AGTTGTACTACAGGGCAGTGGT-ATCCGATGCAAAAATGTATATGACTCGAGAAGAAAAGAAAAAGAAAAATCTCTGGAG
ATATTTTACATTTTCTACTACACTAGAGTTTAGACATGCTGCTGG-----------------------------------
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>SNPs
-S-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-----------S-S----------------------S---SSSSSSSSSSSSSSSSS-----------------------
--------S--------SSSS---------S----SS----------S--------------------S----SSSSS-S
SS-SSS-SSS----------------------------------------------------------------------
--S--S-----------SSS----S-------------------------------------------------------
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--------------------------------------------------------------S---S----S--SSSS--
-------------------------------------------------------SSSSS----S--------S--SSSS
-SSSS--------S---------------------------------------------------------S---SSS--
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-------------------------------------SSSSSSSSSSSSSSSS---------------------------
---------------------------------------------SSSS-----S----S--------------------
------SS-------------------S--S-----S-SSSSS---------S-S--------S----------------
--------------------------------------------------------------------------S-----
-----------------------S----------------------S---------------------------------
-----------S-------S---S---SS------------------S-----------------------------SSS
SS------------------------S----S------------------------------------------------
-----S---S---S-------SSSSSSS---------------S------------------------SS----------
--------------------------------------------------------------------SS----S----S
---------------------------S----------------------------------------------------
-------S-----S--------------------------------------------------S----S-SS-S---S-
S--S----------------------------------------------------------------------------
-----SSS------------S----------------------S------------------------------------
--S-----------------S------S----S---------------------------------------------SS
--------------------------S-----------------------------------------------------
----------------------------------------S-----------------------------S---------
----------------------S---------SSS-SS--S-S-------------------------S-----------
------------------------------S-------------------------------------------------
--------------------------------------------SSSSSS------------------------------
----------S----------------SS---S-SS--------------------------------------------
-------S-------------SS----------------------------SS-SS---S-------------S-S----
------S------------S--SS---------------------SSSSSSSSSSSSSSSS-----------S----S--
--S-SSS-SSS-SSS-S-SSSS-SSSSSS---------------------------S----------S------------
-----------S--------------S--------S-----------SSS-------------------------SS---
------SS---------S---------------SSSSSSSS---S-------------S-------S---S---S-----
--------------SSS---S---S-------------------------------------------------------
----------------------------S--S-------------S--SSSS-S--------------S-S-----S---
-----------------S-S--SSS------------S-S--SS---------S-S-S-S-S--S------S-S------
------SSS-SS-S-SSSS--------------S----------S-----------------------------------
------------------------S-------------------S--------------S-------S----------S-
-----------S-S---------------------SS-----------------------SS-S--SS-SSSSSS-----
S--------S--S-S--S--SS-----SSS--------------------------S--S--S-S-------SSSSSSSS
SSSSSSS----------------------------S-S--S-------S-SS-S-----S---------SSSS-------
SSSS----------
>forward_49
-----------------------------CCTATTCCTCTCTGCCAGCG-------------------------------
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>reverse_1784
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-----------------------ACTTGGAAGCTGGTTGACCA-------------------------------------
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>forward_50
------------------------------CTATTCCTCTCTGCCAGCGG------------------------------
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>reverse_2081
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GTATGGAATCCGACGGCGAC------------------------------------------------------------
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>forward_1766
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------------------------------------------------------------------CACCACTCTGCTCT
TCTGCA--------------------------------------------------------------------------
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>reverse_2977
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----------------ATCGGCGGATGAGCACTAAG--------------------------------------------
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